BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034075
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 61.2 bits (147), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%)
Query: 2 AMERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRL 61
A+++ ++AS PVV+F L G + V ELDE+ G +L+ L
Sbjct: 9 ALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHW 68
Query: 62 GCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAI 102
VP VFIGG+ +GG + V+ H L+P+L+ A
Sbjct: 69 TGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 109
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%)
Query: 2 AMERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRL 61
A+++ ++AS PVV+F L G + V ELDE+ G +L+ L
Sbjct: 10 ALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHW 69
Query: 62 GCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAI 102
VP VFIGG+ +GG + V+ H L+P+L+ A
Sbjct: 70 TGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAAT 110
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 58.5 bits (140), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 1/97 (1%)
Query: 6 VAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPG-GRELEQDLQRLGCS 64
V K +E PVV++ +LF V+P V ELDE+ G ++++ L+RL
Sbjct: 11 VKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLTGQ 70
Query: 65 PAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGA 101
VP VFIGG+ +GG + L+ L P+L A
Sbjct: 71 HTVPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%)
Query: 1 MAMERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQR 60
M + ++ + S+ VVIF LF D VN V ELD + G + + L +
Sbjct: 23 MPVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYK 82
Query: 61 LGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKR 98
+ VP +F+ G +GGA LH L+P++ +
Sbjct: 83 MTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 120
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 4 ERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEM-PGGRELEQDLQRLG 62
E + K +E VVI+ TLF GV P V ELD++ P G +L++ L+RL
Sbjct: 10 ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLT 69
Query: 63 CSPAVPAVFIGGELVGGANQVMSLHLNRSLIPML 96
VP VF+ G+ +GG + L+ L ML
Sbjct: 70 GQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELML 103
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%)
Query: 3 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRLG 62
+ ++ + S+ VVIF LF D VN V ELD + G + + L ++
Sbjct: 39 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 98
Query: 63 CSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKR 98
VP +F+ G +GGA LH L+P++ +
Sbjct: 99 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 134
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%)
Query: 3 MERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRLG 62
+ ++ + S+ VVIF LF D VN V ELD + G + + L ++
Sbjct: 17 VNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMT 76
Query: 63 CSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKR 98
VP +F+ G +GGA LH L+P++ +
Sbjct: 77 GERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 112
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 31 TLFCDFGVNPA---VYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87
TLF + V + V ELDEM G E++ L+ + VP V+I G+ +GG + + +L
Sbjct: 39 TLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLK 98
Query: 88 LNRSLIPMLKRV 99
N L +LK V
Sbjct: 99 KNGKLAEILKPV 110
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 31 TLFCDFGVNPA---VYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87
TLF + V + V ELDEM G E++ L+ + VP V+I G+ +GG + + +L
Sbjct: 36 TLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLK 95
Query: 88 LNRSLIPMLKRV 99
N L +LK V
Sbjct: 96 KNGKLAEILKPV 107
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 31 TLFCDFGVNPA---VYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87
TLF + V + V ELDEM G E++ L+ + VP V+I G+ +GG + + +L
Sbjct: 56 TLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLK 115
Query: 88 LNRSLIPMLKRV 99
N L +LK V
Sbjct: 116 KNGKLAEILKPV 127
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 53 ELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAI 102
E++ LQ+L + VP VFIG E +GG + S+H L+ L++VGA+
Sbjct: 55 EIQDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQVGAV 104
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 53 ELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVG 100
EL Q ++ P +P V++ GE VGG + ++ +H N L+ LK++G
Sbjct: 63 ELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKKLG 110
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 53 ELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAI 102
E++ LQ+L + VP VFIG + +GG++ ++SL + L+ LK++GA+
Sbjct: 55 EIQDYLQQLTGARTVPRVFIGKDSIGGSSDLVSLQQSGELLTRLKQIGAL 104
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 33/50 (66%)
Query: 53 ELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAI 102
E++ LQ+L + VP VFIG + +GG + ++SL + L+ LK++GA+
Sbjct: 56 EIQDYLQQLTGARTVPRVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGAL 105
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%)
Query: 15 VVIFXXXXXXXXXXXXTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGG 74
VVIF LF GV V ELD++ G +++ L + VP +F+
Sbjct: 19 VVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNK 78
Query: 75 ELVGGANQVMSLHLNRSLIPMLK 97
VGG +Q + + L +L+
Sbjct: 79 VHVGGCDQTFQAYQSGLLQKLLQ 101
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 43 YELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLK 97
YE ++ E+ Q L+ P P +++ GELVGG + V L N L+P+L+
Sbjct: 49 YETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 43 YELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLK 97
YE ++ E+ Q L+ P P +++ G+LVGG + V L N L+P+LK
Sbjct: 47 YETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILK 101
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma
Mansoni In Complex With Nadph
Length = 598
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 38 VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSL 92
+ A ELD++ G +++ L VP +F+ G+ +G + V+ + N L
Sbjct: 43 IKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin
Glutatione Reductase From Schistosoma Mansoni In
Complex With Auranofin
Length = 598
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 38 VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSL 92
+ A ELD++ G +++ L VP +F+ G+ +G + V+ + N L
Sbjct: 43 IKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 38 VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSL 92
+ A ELD++ G +++ L VP +F+ G+ +G + V+ + N L
Sbjct: 43 IKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDEL 97
>pdb|3L4N|A Chain A, Crystal Structure Of Yeast Monothiol Glutaredoxin Grx6
Length = 127
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 14 PVVIFXXXXXXXXXXXXTLFCD---FGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV 70
P++IF L + F N + ELD+ G EL++ ++ + VP +
Sbjct: 15 PIIIFSKSTCSYSKGXKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNL 74
Query: 71 FIGGELVGGANQVMSLHLNRSLIPMLK 97
+ G GG ++ LH L+ L+
Sbjct: 75 LVNGVSRGGNEEIKKLHTQGKLLESLQ 101
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 53 ELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIW 103
++ +L + P P +++ GELVGG + V+ ++ L ++K A +
Sbjct: 57 DIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 107
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 53 ELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAIW 103
++ +L + P P +++ GELVGG + V+ ++ L ++K A +
Sbjct: 77 DIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 127
>pdb|2HZE|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Query: 1 MAMERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYEL---DEMPGGRELEQD 57
MA E V + + V IF + F YE+ E EL
Sbjct: 7 MAEEFVQQRLANNKVTIFVKYTXPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDY 66
Query: 58 LQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAI 102
+++ VP +F G +GG + ++ + +L +L +G +
Sbjct: 67 FEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111
>pdb|2HZE|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|A Chain A, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
pdb|2HZF|B Chain B, Crystal Structures Of A Poxviral Glutaredoxin In The
Oxidized And Reduced States Show Redox-Correlated
Structural Changes
Length = 114
Score = 29.3 bits (64), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 3/105 (2%)
Query: 1 MAMERVAKMASERPVVIFXXXXXXXXXXXXTLFCDFGVNPAVYEL---DEMPGGRELEQD 57
MA E V + + V IF + F YE+ E EL
Sbjct: 7 MAEEFVQQRLANNKVTIFVKYTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDY 66
Query: 58 LQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVGAI 102
+++ VP +F G +GG + ++ + +L +L +G +
Sbjct: 67 FEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSSIGVL 111
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 50 GGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSL 92
E+ Q L+ P P +++ GEL+GG + + L + L
Sbjct: 55 SDEEVRQGLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEEL 97
>pdb|2JAC|A Chain A, Glutaredoxin Grx1p C30s Mutant From Yeast
Length = 110
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 42 VYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQV 83
V +L++M G +++ L + VP ++I G+ +GG + +
Sbjct: 50 VLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDL 91
>pdb|3C1R|A Chain A, Crystal Structure Of Oxidized Grx1
pdb|3C1S|A Chain A, Crystal Structure Of Grx1 In Glutathionylated Form
Length = 118
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 42 VYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQV 83
V +L++M G +++ L + VP ++I G+ +GG + +
Sbjct: 58 VLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDL 99
>pdb|2JAD|A Chain A, Yellow Fluorescent Protein - Glutaredoxin Fusion Protein
Length = 362
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 42 VYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQV 83
V +L++M G +++ L + VP ++I G+ +GG + +
Sbjct: 294 VLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDL 335
>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin
Atgr
Length = 109
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 54 LEQDLQRLGCSPAVPAVFIGGELVGGAN 81
L Q L+ P P ++IGGE GG +
Sbjct: 61 LRQGLKEYSNWPTFPQLYIGGEFFGGCD 88
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 55 EQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLK 97
E+ ++R G + VP +FI + +GG + + +L L P+LK
Sbjct: 41 EEMIKRSGRT-TVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully
Oxidized Form
Length = 82
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 55 EQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLK 97
E+ ++R G VP +FI + +GG + + +L L P+LK
Sbjct: 41 EEMIKRSG-RTTVPQIFIDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 53 ELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLK 97
EL ++Q P +FIG VGG + + +L L +LK
Sbjct: 43 ELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDEGKLDSLLK 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,639,814
Number of Sequences: 62578
Number of extensions: 92399
Number of successful extensions: 294
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 33
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)