Query 034075
Match_columns 104
No_of_seqs 164 out of 1032
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:30:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034075.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034075hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03050 glutaredoxin; Provisi 100.0 4.8E-36 1E-40 182.3 13.0 103 1-103 1-106 (108)
2 TIGR02189 GlrX-like_plant Glut 100.0 4.6E-36 9.9E-41 180.0 11.3 98 7-104 2-99 (99)
3 KOG1752 Glutaredoxin and relat 100.0 1.3E-34 2.7E-39 174.2 12.6 103 1-103 2-104 (104)
4 PRK10824 glutaredoxin-4; Provi 100.0 4.2E-34 9E-39 174.9 10.8 99 2-103 4-107 (115)
5 TIGR00365 monothiol glutaredox 100.0 7.1E-31 1.5E-35 157.0 9.9 91 3-96 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 100.0 1.3E-28 2.8E-33 145.3 8.8 85 6-93 1-90 (90)
7 PTZ00062 glutaredoxin; Provisi 99.9 1.9E-27 4.1E-32 158.3 10.5 94 2-98 102-200 (204)
8 PRK10638 glutaredoxin 3; Provi 99.9 8E-27 1.7E-31 135.7 9.7 82 13-97 2-83 (83)
9 COG0278 Glutaredoxin-related p 99.9 1.8E-26 3.9E-31 135.8 9.5 96 2-100 4-105 (105)
10 TIGR02181 GRX_bact Glutaredoxi 99.9 1.6E-26 3.5E-31 133.0 8.5 79 15-96 1-79 (79)
11 TIGR02180 GRX_euk Glutaredoxin 99.9 7.4E-26 1.6E-30 130.9 9.8 82 15-96 1-84 (84)
12 cd03419 GRX_GRXh_1_2_like Glut 99.9 2.8E-25 6E-30 128.2 9.7 81 14-94 1-81 (82)
13 COG0695 GrxC Glutaredoxin and 99.9 5.4E-25 1.2E-29 127.3 9.4 79 14-93 2-80 (80)
14 cd03031 GRX_GRX_like Glutaredo 99.9 9.1E-25 2E-29 138.9 9.5 83 14-99 1-93 (147)
15 cd03418 GRX_GRXb_1_3_like Glut 99.9 5.7E-24 1.2E-28 121.0 9.7 74 14-90 1-75 (75)
16 TIGR02190 GlrX-dom Glutaredoxi 99.9 1.4E-23 3E-28 121.0 7.9 76 8-87 3-78 (79)
17 cd03027 GRX_DEP Glutaredoxin ( 99.9 2E-23 4.4E-28 118.5 7.7 71 14-87 2-72 (73)
18 cd03029 GRX_hybridPRX5 Glutare 99.9 4.6E-23 9.9E-28 116.7 8.3 70 14-87 2-71 (72)
19 PRK12759 bifunctional gluaredo 99.9 1.9E-22 4.1E-27 146.3 10.0 88 13-102 2-94 (410)
20 TIGR02183 GRXA Glutaredoxin, G 99.9 6.5E-22 1.4E-26 115.7 8.3 73 15-90 2-81 (86)
21 PRK11200 grxA glutaredoxin 1; 99.9 1E-21 2.2E-26 114.5 8.3 73 14-89 2-81 (85)
22 KOG0911 Glutaredoxin-related p 99.9 2.1E-21 4.5E-26 129.1 8.9 93 4-99 130-227 (227)
23 cd02066 GRX_family Glutaredoxi 99.9 6.8E-21 1.5E-25 106.3 8.2 71 14-87 1-71 (72)
24 PF00462 Glutaredoxin: Glutare 99.8 3E-20 6.5E-25 101.7 6.4 60 15-77 1-60 (60)
25 cd03030 GRX_SH3BGR Glutaredoxi 99.8 2.2E-19 4.8E-24 106.1 8.3 80 15-97 2-91 (92)
26 TIGR02194 GlrX_NrdH Glutaredox 99.8 1.6E-18 3.4E-23 98.2 6.7 63 15-81 1-64 (72)
27 PRK10329 glutaredoxin-like pro 99.8 2.7E-18 5.8E-23 99.4 7.6 64 14-81 2-65 (81)
28 TIGR02196 GlrX_YruB Glutaredox 99.7 7.4E-16 1.6E-20 86.2 7.1 65 14-81 1-65 (74)
29 cd02976 NrdH NrdH-redoxin (Nrd 99.6 4.1E-15 8.9E-20 83.0 7.6 66 14-82 1-66 (73)
30 KOG2824 Glutaredoxin-related p 99.6 4E-15 8.6E-20 101.7 7.0 87 13-99 131-224 (281)
31 TIGR02200 GlrX_actino Glutared 99.6 1E-14 2.2E-19 82.6 6.7 65 14-81 1-67 (77)
32 cd02973 TRX_GRX_like Thioredox 99.6 1.3E-14 2.8E-19 80.6 5.7 58 14-78 2-64 (67)
33 PF04908 SH3BGR: SH3-binding, 99.4 3.6E-12 7.7E-17 76.1 7.2 81 14-97 2-97 (99)
34 cd00570 GST_N_family Glutathio 99.3 2.1E-11 4.6E-16 66.7 8.6 68 16-86 2-69 (71)
35 cd03041 GST_N_2GST_N GST_N fam 99.3 2.1E-11 4.6E-16 69.5 8.3 71 15-88 2-74 (77)
36 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 7.7E-12 1.7E-16 73.5 6.0 69 3-78 4-77 (89)
37 cd03037 GST_N_GRX2 GST_N famil 99.3 2.5E-11 5.5E-16 68.0 7.8 68 16-88 2-70 (71)
38 cd03040 GST_N_mPGES2 GST_N fam 99.3 3.2E-11 7E-16 68.5 8.1 69 14-88 1-73 (77)
39 cd03060 GST_N_Omega_like GST_N 99.2 2.2E-10 4.7E-15 64.2 8.7 67 16-86 2-69 (71)
40 TIGR00411 redox_disulf_1 small 99.2 1.5E-10 3.2E-15 66.1 8.1 62 14-80 2-68 (82)
41 cd03059 GST_N_SspA GST_N famil 99.2 3.6E-10 7.8E-15 63.3 8.9 70 15-88 1-70 (73)
42 TIGR01295 PedC_BrcD bacterioci 99.1 3.7E-10 8E-15 69.9 7.9 77 4-80 14-106 (122)
43 PHA02125 thioredoxin-like prot 99.1 4.5E-10 9.8E-15 63.8 7.2 55 15-77 2-56 (75)
44 cd03051 GST_N_GTT2_like GST_N 99.1 5E-10 1.1E-14 62.6 7.3 71 15-86 1-72 (74)
45 cd03055 GST_N_Omega GST_N fami 99.1 1.3E-09 2.8E-14 63.8 9.0 71 13-87 17-88 (89)
46 cd03045 GST_N_Delta_Epsilon GS 99.1 1.2E-09 2.6E-14 61.4 8.2 72 15-87 1-72 (74)
47 PF13417 GST_N_3: Glutathione 99.1 2.1E-09 4.6E-14 60.8 7.9 68 17-88 1-68 (75)
48 TIGR00412 redox_disulf_2 small 99.0 5.7E-10 1.2E-14 63.6 5.2 54 15-77 3-60 (76)
49 cd02977 ArsC_family Arsenate R 99.0 9.6E-10 2.1E-14 66.2 6.2 47 15-61 1-48 (105)
50 cd03036 ArsC_like Arsenate Red 99.0 3.6E-10 7.8E-15 68.9 4.2 46 15-60 1-47 (111)
51 PRK01655 spxA transcriptional 99.0 2.4E-09 5.3E-14 67.0 7.8 36 15-50 2-37 (131)
52 cd03056 GST_N_4 GST_N family, 99.0 6.7E-09 1.5E-13 57.9 8.2 71 15-86 1-71 (73)
53 cd02975 PfPDO_like_N Pyrococcu 99.0 1.3E-09 2.8E-14 66.5 5.4 59 7-72 17-81 (113)
54 PRK12559 transcriptional regul 98.9 2.1E-08 4.6E-13 62.8 8.2 35 15-49 2-36 (131)
55 PRK13344 spxA transcriptional 98.9 2E-08 4.4E-13 63.0 8.1 35 15-49 2-36 (132)
56 cd03032 ArsC_Spx Arsenate Redu 98.9 1.8E-08 4E-13 61.6 7.8 45 15-59 2-47 (115)
57 cd03035 ArsC_Yffb Arsenate Red 98.9 7.4E-09 1.6E-13 62.6 5.8 47 15-61 1-48 (105)
58 cd02954 DIM1 Dim1 family; Dim1 98.9 2.4E-08 5.3E-13 61.1 7.7 68 4-78 3-82 (114)
59 PHA02278 thioredoxin-like prot 98.9 4.9E-08 1.1E-12 58.8 9.0 73 3-78 4-86 (103)
60 cd03052 GST_N_GDAP1 GST_N fami 98.9 3.1E-08 6.7E-13 55.9 7.7 72 15-87 1-72 (73)
61 cd03054 GST_N_Metaxin GST_N fa 98.8 4.2E-08 9.2E-13 54.9 8.0 58 21-89 14-71 (72)
62 TIGR01617 arsC_related transcr 98.8 4.7E-09 1E-13 64.4 4.2 48 15-62 1-49 (117)
63 cd03053 GST_N_Phi GST_N family 98.8 8.2E-08 1.8E-12 54.1 8.7 73 15-88 2-74 (76)
64 TIGR02187 GlrX_arch Glutaredox 98.8 1.2E-08 2.5E-13 68.6 5.6 57 12-75 134-195 (215)
65 cd03058 GST_N_Tau GST_N family 98.8 1.1E-07 2.3E-12 53.5 8.8 70 15-88 1-71 (74)
66 cd03033 ArsC_15kD Arsenate Red 98.8 2.4E-08 5.3E-13 61.1 6.2 47 14-60 1-48 (113)
67 PRK15317 alkyl hydroperoxide r 98.8 1.7E-08 3.6E-13 75.5 6.5 69 3-78 108-181 (517)
68 cd03061 GST_N_CLIC GST_N famil 98.8 8.3E-08 1.8E-12 56.6 8.0 64 21-88 20-83 (91)
69 cd02953 DsbDgamma DsbD gamma f 98.8 1E-07 2.2E-12 56.8 8.2 68 4-72 2-78 (104)
70 PF00085 Thioredoxin: Thioredo 98.8 3.6E-08 7.7E-13 58.0 6.0 70 4-78 7-85 (103)
71 cd02989 Phd_like_TxnDC9 Phosdu 98.7 4.7E-08 1E-12 59.6 6.5 70 4-80 13-91 (113)
72 PF05768 DUF836: Glutaredoxin- 98.7 3.2E-07 6.8E-12 52.8 9.4 53 14-74 1-57 (81)
73 TIGR03140 AhpF alkyl hydropero 98.7 1.9E-08 4.1E-13 75.2 4.8 70 3-79 109-183 (515)
74 cd03049 GST_N_3 GST_N family, 98.7 2.3E-07 4.9E-12 51.9 7.8 68 15-86 1-71 (73)
75 KOG0910 Thioredoxin-like prote 98.7 4.1E-08 9E-13 62.4 5.1 56 15-77 65-128 (150)
76 cd02947 TRX_family TRX family; 98.7 1.9E-07 4E-12 53.2 7.3 57 15-78 14-77 (93)
77 TIGR03143 AhpF_homolog putativ 98.7 5.2E-08 1.1E-12 73.5 6.0 67 3-76 468-539 (555)
78 PF13409 GST_N_2: Glutathione 98.7 1.3E-07 2.9E-12 52.8 6.2 67 22-88 1-68 (70)
79 cd03042 GST_N_Zeta GST_N famil 98.7 2.7E-07 5.7E-12 51.4 7.5 70 16-86 2-71 (73)
80 cd02985 TRX_CDSP32 TRX family, 98.6 2.7E-07 5.8E-12 55.2 7.3 72 3-78 3-85 (103)
81 PF13192 Thioredoxin_3: Thiore 98.6 7.3E-08 1.6E-12 54.8 4.6 54 14-76 2-59 (76)
82 KOG3029 Glutathione S-transfer 98.6 2.7E-07 5.9E-12 64.1 8.1 68 14-87 90-157 (370)
83 PTZ00051 thioredoxin; Provisio 98.6 2.6E-07 5.7E-12 54.2 7.0 73 3-80 8-87 (98)
84 cd02957 Phd_like Phosducin (Ph 98.6 4.3E-07 9.3E-12 55.1 7.9 65 15-85 28-97 (113)
85 cd03076 GST_N_Pi GST_N family, 98.6 1.1E-06 2.3E-11 49.4 8.9 71 14-88 1-71 (73)
86 cd02994 PDI_a_TMX PDIa family, 98.6 4.8E-07 1E-11 53.5 7.8 68 3-75 8-82 (101)
87 cd02949 TRX_NTR TRX domain, no 98.6 1.9E-07 4.2E-12 55.1 5.5 58 15-79 17-82 (97)
88 cd03080 GST_N_Metaxin_like GST 98.6 9.4E-07 2E-11 49.9 8.1 63 15-88 2-71 (75)
89 cd03038 GST_N_etherase_LigE GS 98.6 4.3E-07 9.4E-12 52.2 6.8 66 21-88 14-80 (84)
90 cd03050 GST_N_Theta GST_N fami 98.5 1.3E-06 2.8E-11 49.2 8.3 73 15-88 1-73 (76)
91 cd02984 TRX_PICOT TRX domain, 98.5 8.6E-07 1.9E-11 51.9 7.8 70 3-77 2-81 (97)
92 TIGR02187 GlrX_arch Glutaredox 98.5 3.9E-07 8.5E-12 61.2 7.1 66 7-77 15-90 (215)
93 PRK09381 trxA thioredoxin; Pro 98.5 2.3E-06 5E-11 51.2 9.8 61 15-80 25-91 (109)
94 COG4545 Glutaredoxin-related p 98.5 4.9E-07 1.1E-11 51.0 5.9 64 14-79 3-78 (85)
95 COG3118 Thioredoxin domain-con 98.5 5.5E-07 1.2E-11 63.0 7.2 60 15-81 47-114 (304)
96 cd02948 TRX_NDPK TRX domain, T 98.5 2.9E-06 6.2E-11 50.6 9.5 69 3-77 7-84 (102)
97 TIGR02182 GRXB Glutaredoxin, G 98.5 7E-07 1.5E-11 59.6 7.4 69 16-89 1-70 (209)
98 cd02996 PDI_a_ERp44 PDIa famil 98.5 9.8E-07 2.1E-11 52.9 7.3 68 3-75 8-89 (108)
99 COG1393 ArsC Arsenate reductas 98.5 5.9E-07 1.3E-11 55.3 6.4 49 14-62 2-51 (117)
100 cd02959 ERp19 Endoplasmic reti 98.5 1.3E-06 2.9E-11 53.6 7.8 71 4-78 10-91 (117)
101 cd03039 GST_N_Sigma_like GST_N 98.5 1.7E-06 3.7E-11 48.2 7.6 70 15-87 1-70 (72)
102 PRK10026 arsenate reductase; P 98.5 6E-07 1.3E-11 56.9 6.4 49 13-61 2-51 (141)
103 cd03048 GST_N_Ure2p_like GST_N 98.5 2.2E-06 4.8E-11 48.8 8.2 72 15-88 2-76 (81)
104 cd03003 PDI_a_ERdj5_N PDIa fam 98.5 2.1E-06 4.5E-11 50.8 8.4 68 3-77 8-85 (101)
105 PRK09481 sspA stringent starva 98.5 1.9E-06 4E-11 57.5 9.0 73 12-88 8-80 (211)
106 TIGR01616 nitro_assoc nitrogen 98.5 6.3E-07 1.4E-11 55.8 6.2 46 14-59 2-48 (126)
107 PRK10853 putative reductase; P 98.5 5.2E-07 1.1E-11 55.6 5.8 47 15-61 2-49 (118)
108 TIGR00014 arsC arsenate reduct 98.5 5.4E-07 1.2E-11 55.1 5.8 47 15-61 1-48 (114)
109 PRK10387 glutaredoxin 2; Provi 98.5 1.2E-06 2.5E-11 58.1 7.7 70 15-89 1-71 (210)
110 cd02951 SoxW SoxW family; SoxW 98.5 1.3E-06 2.8E-11 53.7 7.2 30 4-33 4-36 (125)
111 PRK10996 thioredoxin 2; Provis 98.4 5.3E-06 1.2E-10 52.2 10.0 70 4-78 43-120 (139)
112 cd02987 Phd_like_Phd Phosducin 98.4 1.1E-06 2.3E-11 57.6 6.9 80 15-100 87-175 (175)
113 cd03044 GST_N_EF1Bgamma GST_N 98.4 2.6E-06 5.7E-11 48.0 7.7 70 16-87 2-72 (75)
114 TIGR01068 thioredoxin thioredo 98.4 6.8E-06 1.5E-10 47.9 9.8 70 4-78 4-82 (101)
115 cd02962 TMX2 TMX2 family; comp 98.4 1.3E-06 2.9E-11 56.0 6.9 74 4-80 36-124 (152)
116 cd03034 ArsC_ArsC Arsenate Red 98.4 8.8E-07 1.9E-11 54.0 5.8 47 15-61 1-48 (112)
117 cd01659 TRX_superfamily Thiore 98.4 1E-06 2.2E-11 46.2 5.3 57 15-75 1-62 (69)
118 cd03002 PDI_a_MPD1_like PDI fa 98.4 1.6E-06 3.5E-11 51.7 6.7 64 4-72 8-80 (109)
119 PF13098 Thioredoxin_2: Thiore 98.4 1.2E-06 2.7E-11 52.5 6.1 69 14-82 8-104 (112)
120 cd02956 ybbN ybbN protein fami 98.4 2.7E-06 6E-11 49.7 7.4 58 15-77 16-79 (96)
121 cd02963 TRX_DnaJ TRX domain, D 98.4 5.3E-06 1.1E-10 50.2 8.8 56 15-77 28-92 (111)
122 KOG4023 Uncharacterized conser 98.4 6.6E-07 1.4E-11 53.0 4.1 85 14-98 3-98 (108)
123 cd02952 TRP14_like Human TRX-r 98.4 1.6E-06 3.6E-11 53.4 6.0 65 15-79 25-105 (119)
124 cd02986 DLP Dim1 family, Dim1- 98.4 2.6E-06 5.7E-11 52.1 6.9 56 15-77 18-81 (114)
125 cd03006 PDI_a_EFP1_N PDIa fami 98.4 1.7E-06 3.7E-11 52.9 5.9 62 10-75 26-95 (113)
126 cd02965 HyaE HyaE family; HyaE 98.3 5E-06 1.1E-10 50.7 7.7 71 5-80 19-99 (111)
127 cd02950 TxlA TRX-like protein 98.3 3.8E-06 8.3E-11 53.1 7.3 67 6-77 13-90 (142)
128 cd03004 PDI_a_ERdj5_C PDIa fam 98.3 8E-06 1.7E-10 48.4 8.3 66 4-74 9-83 (104)
129 cd02993 PDI_a_APS_reductase PD 98.3 6.5E-06 1.4E-10 49.5 8.0 66 3-71 8-83 (109)
130 PRK10877 protein disulfide iso 98.3 3.6E-06 7.9E-11 57.3 7.6 68 14-81 110-218 (232)
131 cd03047 GST_N_2 GST_N family, 98.3 1E-05 2.2E-10 45.2 8.1 70 16-86 2-71 (73)
132 cd02999 PDI_a_ERp44_like PDIa 98.3 2.7E-06 5.9E-11 50.7 6.0 53 15-71 22-77 (100)
133 cd02961 PDI_a_family Protein D 98.3 1.1E-05 2.3E-10 46.7 8.4 64 4-72 6-77 (101)
134 cd03000 PDI_a_TMX3 PDIa family 98.3 5.8E-06 1.3E-10 49.2 7.2 63 4-71 7-77 (104)
135 cd02955 SSP411 TRX domain, SSP 98.3 1.8E-05 4E-10 49.1 9.4 76 4-80 6-97 (124)
136 cd03005 PDI_a_ERp46 PDIa famil 98.3 8.7E-06 1.9E-10 47.8 7.5 69 4-77 8-86 (102)
137 KOG0907 Thioredoxin [Posttrans 98.3 2.2E-06 4.7E-11 51.9 4.9 56 15-77 25-87 (106)
138 cd03057 GST_N_Beta GST_N famil 98.2 1.4E-05 3.1E-10 44.9 7.7 71 16-88 2-73 (77)
139 cd03065 PDI_b_Calsequestrin_N 98.2 5.3E-06 1.2E-10 51.2 6.3 69 3-78 16-101 (120)
140 TIGR01126 pdi_dom protein disu 98.2 1.2E-05 2.6E-10 47.1 7.6 64 4-72 4-75 (102)
141 KOG0406 Glutathione S-transfer 98.2 1.3E-05 2.8E-10 54.6 8.5 73 13-88 8-80 (231)
142 PRK15113 glutathione S-transfe 98.2 1.7E-05 3.8E-10 52.9 9.0 75 13-88 4-80 (214)
143 TIGR00862 O-ClC intracellular 98.2 2.5E-05 5.3E-10 53.5 9.5 65 21-89 17-81 (236)
144 cd02997 PDI_a_PDIR PDIa family 98.2 1.6E-05 3.4E-10 46.8 7.6 70 5-77 9-88 (104)
145 cd03001 PDI_a_P5 PDIa family, 98.2 2.6E-05 5.7E-10 45.8 8.3 63 4-71 8-77 (103)
146 cd02998 PDI_a_ERp38 PDIa famil 98.2 1.8E-05 4E-10 46.5 7.3 54 15-72 22-81 (105)
147 cd02988 Phd_like_VIAF Phosduci 98.2 5.2E-06 1.1E-10 55.1 5.3 90 3-100 90-192 (192)
148 cd03046 GST_N_GTT1_like GST_N 98.1 3.3E-05 7.1E-10 43.1 7.7 71 16-88 2-72 (76)
149 cd03043 GST_N_1 GST_N family, 98.1 5.7E-05 1.2E-09 42.3 8.5 64 21-86 8-71 (73)
150 PLN00410 U5 snRNP protein, DIM 98.1 4.5E-06 9.7E-11 53.0 4.2 66 3-75 11-89 (142)
151 TIGR02740 TraF-like TraF-like 98.1 1.5E-05 3.2E-10 55.6 7.1 67 5-72 160-235 (271)
152 PF13728 TraF: F plasmid trans 98.1 1.9E-05 4.2E-10 53.3 7.4 68 4-72 113-189 (215)
153 PF14595 Thioredoxin_9: Thiore 98.1 1.4E-06 3E-11 54.5 1.3 65 4-72 34-103 (129)
154 PLN02473 glutathione S-transfe 98.1 4.5E-05 9.7E-10 50.7 8.4 73 15-88 3-75 (214)
155 PTZ00062 glutaredoxin; Provisi 98.1 2.1E-05 4.5E-10 52.8 6.6 67 2-81 5-79 (204)
156 cd02992 PDI_a_QSOX PDIa family 98.0 4.4E-05 9.5E-10 46.5 6.9 66 4-72 9-84 (114)
157 PLN02378 glutathione S-transfe 98.0 5.5E-05 1.2E-09 50.6 7.8 64 21-88 18-81 (213)
158 cd03020 DsbA_DsbC_DsbG DsbA fa 98.0 5E-05 1.1E-09 50.2 7.5 32 13-44 79-112 (197)
159 TIGR01262 maiA maleylacetoacet 98.0 3.2E-05 6.8E-10 51.2 6.4 72 17-88 2-73 (210)
160 PLN02817 glutathione dehydroge 98.0 6.4E-05 1.4E-09 52.2 8.0 64 21-88 71-134 (265)
161 PF13899 Thioredoxin_7: Thiore 98.0 3E-05 6.6E-10 44.3 5.5 61 6-72 10-79 (82)
162 PTZ00443 Thioredoxin domain-co 98.0 8E-05 1.7E-09 50.6 8.2 58 15-77 56-119 (224)
163 PRK13728 conjugal transfer pro 98.0 5.3E-05 1.2E-09 49.9 7.1 35 14-48 72-110 (181)
164 TIGR02738 TrbB type-F conjugat 97.9 5E-05 1.1E-09 48.8 6.7 38 11-48 50-91 (153)
165 cd02995 PDI_a_PDI_a'_C PDIa fa 97.9 8E-05 1.7E-09 43.7 6.9 62 5-72 9-79 (104)
166 PF03960 ArsC: ArsC family; I 97.9 2.1E-05 4.5E-10 47.6 4.4 45 18-62 1-46 (110)
167 cd03008 TryX_like_RdCVF Trypar 97.9 0.00014 2.9E-09 46.4 7.9 21 15-35 29-49 (146)
168 TIGR00424 APS_reduc 5'-adenyly 97.8 9.3E-05 2E-09 55.1 7.5 67 4-75 359-439 (463)
169 COG0625 Gst Glutathione S-tran 97.8 0.0001 2.2E-09 49.0 6.9 73 16-90 2-75 (211)
170 TIGR01130 ER_PDI_fam protein d 97.8 0.00021 4.6E-09 52.2 8.4 69 3-76 8-87 (462)
171 TIGR02739 TraF type-F conjugat 97.8 0.00019 4E-09 49.8 7.3 68 4-72 143-219 (256)
172 PTZ00102 disulphide isomerase; 97.7 0.00024 5.3E-09 52.4 8.3 68 4-76 40-118 (477)
173 PRK13703 conjugal pilus assemb 97.7 0.00016 3.5E-09 49.8 6.8 68 4-72 136-212 (248)
174 cd03078 GST_N_Metaxin1_like GS 97.7 0.00046 1E-08 38.8 7.2 58 21-89 14-71 (73)
175 cd03007 PDI_a_ERp29_N PDIa fam 97.7 0.001 2.2E-08 40.8 9.2 71 3-75 8-91 (116)
176 cd02972 DsbA_family DsbA famil 97.7 0.00022 4.8E-09 40.8 5.8 33 15-47 1-39 (98)
177 cd03009 TryX_like_TryX_NRX Try 97.7 0.00049 1.1E-08 42.4 7.6 20 15-34 22-41 (131)
178 PRK10357 putative glutathione 97.7 0.00033 7.2E-09 46.1 7.3 69 16-88 2-71 (202)
179 cd03077 GST_N_Alpha GST_N fami 97.7 0.00044 9.6E-09 39.3 6.9 69 15-87 2-72 (79)
180 KOG3425 Uncharacterized conser 97.6 0.00019 4.1E-09 44.2 5.2 54 21-74 43-103 (128)
181 PRK00293 dipZ thiol:disulfide 97.6 0.00062 1.3E-08 52.0 9.1 60 15-76 478-547 (571)
182 cd02964 TryX_like_family Trypa 97.6 0.00032 6.9E-09 43.4 6.3 20 15-34 21-40 (132)
183 cd02960 AGR Anterior Gradient 97.6 0.00038 8.1E-09 43.6 6.5 64 4-73 14-87 (130)
184 PF13905 Thioredoxin_8: Thiore 97.5 0.00035 7.6E-09 40.5 5.5 47 15-61 5-57 (95)
185 KOG0190 Protein disulfide isom 97.5 0.00029 6.2E-09 52.8 6.0 69 3-76 32-111 (493)
186 PRK13972 GSH-dependent disulfi 97.5 0.0012 2.5E-08 44.0 8.2 72 15-88 2-80 (215)
187 PLN02395 glutathione S-transfe 97.5 0.0011 2.5E-08 43.9 8.1 73 15-89 3-75 (215)
188 PLN02309 5'-adenylylsulfate re 97.5 0.00031 6.7E-09 52.3 5.6 58 15-75 369-433 (457)
189 cd03010 TlpA_like_DsbE TlpA-li 97.5 0.001 2.3E-08 40.6 7.2 32 15-46 29-62 (127)
190 cd02967 mauD Methylamine utili 97.5 0.00094 2E-08 39.9 6.8 55 15-71 25-83 (114)
191 PRK15412 thiol:disulfide inter 97.5 0.00078 1.7E-08 44.2 6.9 22 15-36 72-93 (185)
192 COG2999 GrxB Glutaredoxin 2 [P 97.4 0.00026 5.7E-09 46.5 4.4 68 16-88 2-70 (215)
193 TIGR02661 MauD methylamine deh 97.4 0.002 4.4E-08 42.5 8.2 30 15-44 78-111 (189)
194 cd03011 TlpA_like_ScsD_MtbDsbE 97.4 0.00054 1.2E-08 41.5 5.0 24 14-37 23-46 (123)
195 TIGR00385 dsbE periplasmic pro 97.4 0.0012 2.5E-08 42.9 6.8 22 15-36 67-88 (173)
196 KOG1422 Intracellular Cl- chan 97.4 0.0018 3.8E-08 43.6 7.6 63 22-88 20-82 (221)
197 PRK11752 putative S-transferas 97.3 0.0021 4.5E-08 44.5 8.0 76 11-88 41-126 (264)
198 cd03079 GST_N_Metaxin2 GST_N f 97.3 0.0027 5.8E-08 36.0 6.9 58 21-88 15-72 (74)
199 PTZ00102 disulphide isomerase; 97.3 0.00054 1.2E-08 50.6 5.1 31 6-36 367-400 (477)
200 COG3019 Predicted metal-bindin 97.2 0.0018 3.9E-08 40.9 6.1 78 11-91 24-104 (149)
201 KOG4244 Failed axon connection 97.2 0.00092 2E-08 46.3 4.8 61 14-85 45-112 (281)
202 cd02966 TlpA_like_family TlpA- 97.2 0.0015 3.2E-08 38.2 5.2 23 14-36 22-44 (116)
203 cd02982 PDI_b'_family Protein 97.1 0.0026 5.6E-08 37.3 6.1 52 14-72 15-74 (103)
204 KOG2501 Thioredoxin, nucleored 97.1 0.00067 1.4E-08 43.7 3.5 43 17-59 39-88 (157)
205 PRK03147 thiol-disulfide oxido 97.1 0.004 8.6E-08 39.9 7.0 21 14-34 64-84 (173)
206 KOG0908 Thioredoxin-like prote 97.1 0.0019 4E-08 44.7 5.6 56 15-77 25-87 (288)
207 PF02798 GST_N: Glutathione S- 97.1 0.011 2.4E-07 33.1 8.0 70 15-87 3-74 (76)
208 PF06764 DUF1223: Protein of u 97.0 0.0012 2.6E-08 44.2 4.3 67 15-81 2-86 (202)
209 KOG0912 Thiol-disulfide isomer 97.0 0.003 6.5E-08 44.9 6.3 73 1-78 1-86 (375)
210 cd03075 GST_N_Mu GST_N family, 97.0 0.013 2.7E-07 33.5 8.0 71 17-87 3-78 (82)
211 PRK10542 glutathionine S-trans 97.0 0.005 1.1E-07 40.3 7.0 72 16-88 2-74 (201)
212 PF06110 DUF953: Eukaryotic pr 97.0 0.00079 1.7E-08 41.5 2.8 52 21-72 36-95 (119)
213 PRK11657 dsbG disulfide isomer 97.0 0.00083 1.8E-08 46.3 3.2 31 14-44 120-154 (251)
214 KOG0868 Glutathione S-transfer 96.9 0.0035 7.6E-08 41.4 5.7 71 18-90 11-81 (217)
215 cd02958 UAS UAS family; UAS is 96.9 0.0092 2E-07 35.9 7.3 71 4-77 8-91 (114)
216 KOG4277 Uncharacterized conser 96.9 0.0017 3.7E-08 46.2 4.6 58 15-77 47-112 (468)
217 PF07315 DUF1462: Protein of u 96.8 0.0068 1.5E-07 35.5 5.5 64 16-79 1-80 (93)
218 COG5494 Predicted thioredoxin/ 96.8 0.0082 1.8E-07 40.6 6.6 59 13-78 11-71 (265)
219 COG2143 Thioredoxin-related pr 96.8 0.0092 2E-07 38.6 6.5 19 15-33 46-64 (182)
220 COG4232 Thiol:disulfide interc 96.6 0.0044 9.4E-08 47.2 4.9 91 5-99 464-567 (569)
221 PF08534 Redoxin: Redoxin; In 96.6 0.021 4.5E-07 35.5 7.3 33 15-47 32-72 (146)
222 PF10568 Tom37: Outer mitochon 96.6 0.021 4.6E-07 32.1 6.5 55 22-87 13-71 (72)
223 PLN02919 haloacid dehalogenase 96.6 0.016 3.4E-07 47.4 8.0 22 15-36 424-445 (1057)
224 cd00340 GSH_Peroxidase Glutath 96.6 0.0062 1.3E-07 38.6 4.7 55 15-71 26-92 (152)
225 smart00594 UAS UAS domain. 96.5 0.037 8.1E-07 33.9 7.9 66 4-72 18-92 (122)
226 PF06953 ArsD: Arsenical resis 96.5 0.01 2.2E-07 36.8 5.3 54 28-82 31-90 (123)
227 cd03012 TlpA_like_DipZ_like Tl 96.5 0.02 4.4E-07 34.9 6.7 22 15-36 27-48 (126)
228 PTZ00057 glutathione s-transfe 96.5 0.037 8E-07 36.6 8.2 74 14-87 4-79 (205)
229 PRK14018 trifunctional thiored 96.4 0.0081 1.8E-07 45.6 5.4 22 15-36 60-81 (521)
230 PTZ00056 glutathione peroxidas 96.4 0.011 2.5E-07 39.3 5.5 20 15-34 43-62 (199)
231 TIGR01130 ER_PDI_fam protein d 96.4 0.0093 2E-07 43.6 5.6 21 15-35 368-388 (462)
232 COG3634 AhpF Alkyl hydroperoxi 96.3 0.031 6.8E-07 40.9 7.6 71 4-79 109-182 (520)
233 KOG0867 Glutathione S-transfer 96.3 0.036 7.8E-07 37.6 7.5 74 14-88 2-75 (226)
234 PLN02412 probable glutathione 96.3 0.026 5.7E-07 36.4 6.5 19 15-33 33-51 (167)
235 PF02114 Phosducin: Phosducin; 96.3 0.019 4.2E-07 40.0 6.2 82 15-102 150-240 (265)
236 COG4837 Uncharacterized protei 96.2 0.011 2.3E-07 35.0 4.0 69 11-79 3-87 (106)
237 TIGR01626 ytfJ_HI0045 conserve 96.2 0.023 5E-07 37.6 6.0 35 14-48 62-105 (184)
238 cd03023 DsbA_Com1_like DsbA fa 96.1 0.0053 1.1E-07 38.1 2.7 23 13-35 7-29 (154)
239 PTZ00256 glutathione peroxidas 96.0 0.026 5.5E-07 37.0 5.3 19 16-34 46-64 (183)
240 cd02968 SCO SCO (an acronym fo 95.9 0.046 9.9E-07 33.7 6.2 22 14-35 25-47 (142)
241 PF03190 Thioredox_DsbH: Prote 95.9 0.02 4.3E-07 37.2 4.5 73 5-78 29-117 (163)
242 PLN02399 phospholipid hydroper 95.8 0.042 9.1E-07 37.7 6.0 19 15-33 103-121 (236)
243 TIGR02540 gpx7 putative glutat 95.8 0.03 6.5E-07 35.4 5.0 19 15-33 26-44 (153)
244 PHA03075 glutaredoxin-like pro 95.6 0.026 5.6E-07 34.6 4.0 33 14-46 4-36 (123)
245 KOG0190 Protein disulfide isom 95.5 0.007 1.5E-07 45.5 1.3 26 15-40 388-413 (493)
246 KOG0191 Thioredoxin/protein di 95.4 0.047 1E-06 39.7 5.5 58 12-74 48-111 (383)
247 PF04134 DUF393: Protein of un 95.3 0.045 9.7E-07 32.9 4.4 71 17-91 1-78 (114)
248 COG0526 TrxA Thiol-disulfide i 95.2 0.018 3.9E-07 33.0 2.3 19 18-36 39-57 (127)
249 cd03019 DsbA_DsbA DsbA family, 95.1 0.02 4.4E-07 36.6 2.5 24 12-35 16-39 (178)
250 PF00578 AhpC-TSA: AhpC/TSA fa 95.0 0.11 2.3E-06 31.1 5.5 55 15-72 29-89 (124)
251 cd02969 PRX_like1 Peroxiredoxi 95.0 0.11 2.4E-06 33.3 5.8 21 14-34 28-48 (171)
252 KOG4420 Uncharacterized conser 95.0 0.021 4.6E-07 39.9 2.5 74 15-89 27-100 (325)
253 TIGR03137 AhpC peroxiredoxin. 94.8 0.069 1.5E-06 35.1 4.5 33 14-46 33-74 (187)
254 cd02971 PRX_family Peroxiredox 94.8 0.08 1.7E-06 32.4 4.6 20 15-34 26-46 (140)
255 cd02970 PRX_like2 Peroxiredoxi 94.6 0.2 4.2E-06 30.9 6.1 21 15-35 27-48 (149)
256 cd03017 PRX_BCP Peroxiredoxin 94.5 0.15 3.2E-06 31.3 5.2 19 15-33 27-46 (140)
257 cd03018 PRX_AhpE_like Peroxire 94.4 0.11 2.3E-06 32.3 4.5 21 15-35 32-53 (149)
258 PF13462 Thioredoxin_4: Thiore 94.4 0.059 1.3E-06 33.8 3.3 32 14-45 15-54 (162)
259 COG5429 Uncharacterized secret 94.3 0.095 2E-06 36.1 4.2 66 15-80 45-128 (261)
260 cd03015 PRX_Typ2cys Peroxiredo 94.1 0.13 2.8E-06 33.2 4.6 21 14-34 31-53 (173)
261 KOG0913 Thiol-disulfide isomer 94.0 0.016 3.5E-07 39.7 0.1 63 7-76 35-106 (248)
262 KOG0191 Thioredoxin/protein di 93.7 0.12 2.7E-06 37.5 4.2 59 13-76 164-230 (383)
263 cd05295 MDH_like Malate dehydr 93.3 0.27 5.8E-06 36.9 5.5 69 20-88 1-82 (452)
264 cd03016 PRX_1cys Peroxiredoxin 93.0 0.16 3.5E-06 33.8 3.7 30 17-46 32-68 (203)
265 KOG1695 Glutathione S-transfer 92.9 1.2 2.6E-05 30.1 7.7 70 14-87 3-72 (206)
266 KOG1731 FAD-dependent sulfhydr 92.9 0.052 1.1E-06 41.5 1.3 67 14-80 60-139 (606)
267 PRK13599 putative peroxiredoxi 92.9 0.19 4.1E-06 34.0 3.8 30 17-46 35-71 (215)
268 TIGR03143 AhpF_homolog putativ 92.6 0.33 7.1E-06 37.1 5.2 52 14-72 369-425 (555)
269 PF11009 DUF2847: Protein of u 92.6 0.72 1.6E-05 27.9 5.7 74 3-79 7-93 (105)
270 TIGR01162 purE phosphoribosyla 92.3 0.65 1.4E-05 30.0 5.5 74 15-88 3-100 (156)
271 cd03022 DsbA_HCCA_Iso DsbA fam 91.9 0.31 6.8E-06 31.5 4.0 25 62-86 163-187 (192)
272 KOG3171 Conserved phosducin-li 91.7 0.61 1.3E-05 31.9 5.1 81 16-102 164-253 (273)
273 PRK09437 bcp thioredoxin-depen 91.7 1 2.2E-05 28.2 6.0 20 12-31 30-51 (154)
274 PRK13189 peroxiredoxin; Provis 91.7 0.33 7.2E-06 32.9 3.9 30 17-46 42-78 (222)
275 PF13462 Thioredoxin_4: Thiore 91.6 0.25 5.4E-06 30.9 3.1 23 62-84 132-154 (162)
276 PRK10606 btuE putative glutath 91.5 0.84 1.8E-05 30.1 5.6 60 15-75 29-102 (183)
277 PRK13190 putative peroxiredoxi 91.2 0.36 7.9E-06 32.1 3.7 16 18-33 35-50 (202)
278 PRK10382 alkyl hydroperoxide r 91.2 0.41 8.9E-06 31.6 3.9 20 14-33 33-54 (187)
279 TIGR03759 conj_TIGR03759 integ 91.1 1.5 3.2E-05 29.5 6.4 46 13-58 110-155 (200)
280 PRK15000 peroxidase; Provision 91.0 0.68 1.5E-05 30.8 4.8 22 12-33 34-57 (200)
281 cd03014 PRX_Atyp2cys Peroxired 90.7 0.56 1.2E-05 28.9 4.1 20 15-34 30-50 (143)
282 KOG1672 ATP binding protein [P 90.7 1.7 3.7E-05 29.2 6.4 95 3-102 75-180 (211)
283 PRK13191 putative peroxiredoxi 90.6 0.47 1E-05 32.0 3.9 31 17-47 40-77 (215)
284 KOG3414 Component of the U4/U6 90.4 1.1 2.4E-05 28.1 5.0 67 4-77 12-90 (142)
285 PF01323 DSBA: DSBA-like thior 90.1 0.32 6.8E-06 31.4 2.6 33 14-46 1-38 (193)
286 COG3011 Predicted thiol-disulf 89.6 3.8 8.1E-05 26.0 8.2 72 11-86 6-82 (137)
287 PRK11509 hydrogenase-1 operon 89.4 2.7 5.9E-05 26.4 6.3 70 6-80 27-107 (132)
288 cd03023 DsbA_Com1_like DsbA fa 89.0 0.77 1.7E-05 28.2 3.7 25 62-86 125-149 (154)
289 PRK10954 periplasmic protein d 88.7 0.28 6.1E-06 32.7 1.6 20 13-32 39-58 (207)
290 PRK00522 tpx lipid hydroperoxi 88.2 1.3 2.9E-05 28.4 4.5 34 15-48 48-85 (167)
291 cd03010 TlpA_like_DsbE TlpA-li 88.2 4 8.6E-05 24.5 6.8 65 6-77 47-114 (127)
292 KOG0914 Thioredoxin-like prote 87.3 0.5 1.1E-05 32.4 2.1 70 6-77 135-218 (265)
293 PF10865 DUF2703: Domain of un 87.1 2.9 6.2E-05 25.9 5.2 48 22-77 14-72 (120)
294 PTZ00253 tryparedoxin peroxida 85.6 2 4.3E-05 28.4 4.3 27 21-47 47-80 (199)
295 COG0041 PurE Phosphoribosylcar 85.4 4.5 9.8E-05 26.2 5.6 72 15-86 7-102 (162)
296 PTZ00137 2-Cys peroxiredoxin; 85.2 2.8 6.1E-05 29.3 5.1 40 7-46 93-141 (261)
297 cd03025 DsbA_FrnE_like DsbA fa 84.8 0.64 1.4E-05 30.0 1.7 21 14-34 2-22 (193)
298 COG1651 DsbG Protein-disulfide 84.8 4.5 9.8E-05 27.3 5.9 33 13-45 86-123 (244)
299 TIGR01689 EcbF-BcbF capsule bi 83.5 4.8 0.0001 25.0 5.1 45 3-47 30-87 (126)
300 PRK10954 periplasmic protein d 83.3 1.4 3E-05 29.4 2.8 21 62-82 163-183 (207)
301 COG2761 FrnE Predicted dithiol 82.2 0.78 1.7E-05 31.4 1.3 23 14-36 7-29 (225)
302 PF11287 DUF3088: Protein of u 81.3 3.4 7.3E-05 25.3 3.7 50 22-75 23-77 (112)
303 PF04566 RNA_pol_Rpb2_4: RNA p 81.2 2 4.2E-05 23.5 2.4 13 70-82 1-13 (63)
304 PF01323 DSBA: DSBA-like thior 80.9 2.7 5.9E-05 27.0 3.5 25 62-86 163-188 (193)
305 COG1331 Highly conserved prote 80.5 8.6 0.00019 30.5 6.4 73 5-77 35-122 (667)
306 PF03227 GILT: Gamma interfero 80.3 1.7 3.7E-05 26.0 2.2 16 14-29 2-17 (108)
307 cd03013 PRX5_like Peroxiredoxi 79.0 7.3 0.00016 24.7 5.0 22 8-29 25-48 (155)
308 PF15643 Tox-PL-2: Papain fold 79.0 10 0.00022 22.7 5.1 27 22-48 20-47 (100)
309 cd00897 UGPase_euk Eukaryotic 79.0 15 0.00031 26.3 6.8 78 25-103 38-139 (300)
310 cd03022 DsbA_HCCA_Iso DsbA fam 78.9 2.3 5E-05 27.3 2.7 28 15-42 1-32 (192)
311 cd03019 DsbA_DsbA DsbA family, 78.2 3.8 8.2E-05 25.9 3.5 21 62-82 139-159 (178)
312 PF13344 Hydrolase_6: Haloacid 75.7 7.7 0.00017 22.8 4.1 58 2-61 19-77 (101)
313 COG1651 DsbG Protein-disulfide 74.9 4.7 0.0001 27.2 3.4 22 62-83 211-232 (244)
314 TIGR00385 dsbE periplasmic pro 74.9 19 0.00042 23.0 6.6 56 15-77 93-151 (173)
315 COG3340 PepE Peptidase E [Amin 74.7 20 0.00044 24.6 6.2 73 21-103 46-121 (224)
316 PF09822 ABC_transp_aux: ABC-t 74.3 9.8 0.00021 26.2 4.9 49 2-50 16-75 (271)
317 cd02974 AhpF_NTD_N Alkyl hydro 73.9 5.9 0.00013 23.3 3.2 21 15-36 23-43 (94)
318 cd08183 Fe-ADH2 Iron-containin 73.6 28 0.00061 25.3 7.3 70 13-83 23-93 (374)
319 PF10087 DUF2325: Uncharacteri 73.6 15 0.00033 21.3 5.0 40 5-44 41-82 (97)
320 cd03024 DsbA_FrnE DsbA family, 72.7 2.8 6.2E-05 27.2 1.9 19 15-33 1-19 (201)
321 PF00731 AIRC: AIR carboxylase 71.6 5.9 0.00013 25.4 3.0 41 21-61 11-51 (150)
322 PLN02948 phosphoribosylaminoim 71.5 14 0.00031 28.7 5.6 73 17-89 417-513 (577)
323 TIGR03190 benz_CoA_bzdN benzoy 71.4 15 0.00033 26.8 5.5 12 66-77 343-354 (377)
324 cd03035 ArsC_Yffb Arsenate Red 71.1 4.5 9.7E-05 24.1 2.3 58 24-81 36-104 (105)
325 PF13743 Thioredoxin_5: Thiore 70.7 4.6 0.0001 26.3 2.5 20 17-36 2-21 (176)
326 COG1999 Uncharacterized protei 69.8 27 0.00058 23.4 6.1 60 15-75 71-140 (207)
327 cd03021 DsbA_GSTK DsbA family, 69.0 7.6 0.00016 25.7 3.3 28 14-41 2-33 (209)
328 PRK07114 keto-hydroxyglutarate 65.0 42 0.0009 22.9 8.1 88 1-90 3-91 (222)
329 PF09413 DUF2007: Domain of un 64.9 7.2 0.00016 20.9 2.2 53 15-75 1-53 (67)
330 KOG3027 Mitochondrial outer me 64.7 27 0.00059 24.0 5.2 66 21-96 32-99 (257)
331 PF00004 AAA: ATPase family as 64.5 7.2 0.00016 23.1 2.3 61 15-75 1-67 (132)
332 TIGR03865 PQQ_CXXCW PQQ-depend 64.1 14 0.0003 23.7 3.7 29 11-39 115-143 (162)
333 KOG2603 Oligosaccharyltransfer 64.0 12 0.00025 27.1 3.5 52 15-73 64-133 (331)
334 cd06387 PBP1_iGluR_AMPA_GluR3 63.2 52 0.0011 24.0 6.9 84 2-86 52-146 (372)
335 cd04335 PrdX_deacylase This CD 62.8 21 0.00046 22.4 4.4 44 28-72 3-46 (156)
336 TIGR00014 arsC arsenate reduct 62.8 16 0.00035 22.0 3.6 31 52-82 77-107 (114)
337 PF00282 Pyridoxal_deC: Pyrido 62.4 15 0.00033 26.8 4.0 73 12-86 139-216 (373)
338 cd02127 PA_hPAP21_like PA_hPAP 62.4 20 0.00044 21.8 4.0 72 12-91 34-110 (118)
339 PF13905 Thioredoxin_8: Thiore 61.9 26 0.00057 19.6 5.9 56 12-72 33-88 (95)
340 PF02288 Dehydratase_MU: Dehyd 61.4 21 0.00045 21.8 3.9 51 13-63 3-56 (112)
341 cd04336 YeaK YeaK is an unchar 61.3 21 0.00045 22.3 4.1 27 27-53 2-28 (153)
342 cd03024 DsbA_FrnE DsbA family, 60.7 14 0.00031 23.9 3.4 22 62-83 171-193 (201)
343 cd06388 PBP1_iGluR_AMPA_GluR4 60.4 63 0.0014 23.4 7.4 85 2-87 52-147 (371)
344 COG0602 NrdG Organic radical a 59.9 4.7 0.0001 27.2 1.0 83 14-103 22-111 (212)
345 KOG1734 Predicted RING-contain 59.4 4.6 9.9E-05 28.6 0.8 11 20-30 270-280 (328)
346 cd03082 TRX_Fd_NuoE_W_FDH_beta 58.4 19 0.00042 19.9 3.2 28 62-89 42-71 (72)
347 cd02991 UAS_ETEA UAS family, E 58.3 39 0.00085 20.4 7.2 62 4-72 8-83 (116)
348 cd08170 GlyDH Glycerol dehydro 58.1 67 0.0015 23.1 7.0 48 13-60 23-72 (351)
349 PF03575 Peptidase_S51: Peptid 57.6 32 0.00069 21.6 4.5 63 26-98 2-64 (154)
350 TIGR00635 ruvB Holliday juncti 57.4 62 0.0013 22.4 7.7 59 14-75 32-90 (305)
351 cd08185 Fe-ADH1 Iron-containin 57.4 73 0.0016 23.2 6.8 48 13-60 26-78 (380)
352 PF01704 UDPGP: UTP--glucose-1 57.3 34 0.00074 25.6 5.2 78 25-103 91-194 (420)
353 TIGR02654 circ_KaiB circadian 57.3 19 0.00042 21.0 3.1 64 15-85 6-81 (87)
354 PRK15317 alkyl hydroperoxide r 57.2 14 0.00031 28.0 3.3 22 15-37 23-44 (517)
355 cd08193 HVD 5-hydroxyvalerate 56.7 72 0.0016 23.2 6.7 71 13-83 27-101 (376)
356 PF14437 MafB19-deam: MafB19-l 56.6 51 0.0011 21.2 5.2 30 12-41 99-130 (146)
357 cd03036 ArsC_like Arsenate Red 56.5 19 0.00041 21.5 3.2 31 52-82 78-108 (111)
358 cd08192 Fe-ADH7 Iron-containin 56.3 74 0.0016 23.0 6.7 70 13-83 25-99 (370)
359 cd06381 PBP1_iGluR_delta_like 56.3 75 0.0016 23.0 8.2 41 2-42 51-91 (363)
360 PRK15348 type III secretion sy 55.9 17 0.00037 25.3 3.2 87 11-99 17-119 (249)
361 PLN02474 UTP--glucose-1-phosph 55.8 91 0.002 23.9 7.3 76 27-103 116-215 (469)
362 cd03146 GAT1_Peptidase_E Type 55.8 59 0.0013 21.7 8.7 65 23-99 45-110 (212)
363 PF05673 DUF815: Protein of un 55.8 50 0.0011 23.1 5.4 63 12-75 52-115 (249)
364 cd00755 YgdL_like Family of ac 55.6 14 0.0003 25.3 2.7 23 17-39 150-172 (231)
365 cd04911 ACT_AKiii-YclM-BS_1 AC 55.5 16 0.00034 20.7 2.5 22 22-43 14-35 (76)
366 PF07511 DUF1525: Protein of u 55.2 40 0.00087 20.6 4.4 25 62-86 79-104 (114)
367 PLN00020 ribulose bisphosphate 54.5 38 0.00083 25.4 4.9 60 15-74 151-220 (413)
368 PRK09301 circadian clock prote 54.4 22 0.00048 21.4 3.1 64 15-85 9-84 (103)
369 TIGR01616 nitro_assoc nitrogen 54.4 26 0.00056 21.7 3.6 59 24-82 38-106 (126)
370 cd04816 PA_SaNapH_like PA_SaNa 54.3 46 0.001 20.0 5.2 73 12-90 43-115 (122)
371 PRK04195 replication factor C 54.1 93 0.002 23.5 7.6 35 12-46 39-73 (482)
372 KOG2454 Betaine aldehyde dehyd 54.0 41 0.00089 25.4 5.0 39 8-46 212-255 (583)
373 PF00763 THF_DHG_CYH: Tetrahyd 53.8 31 0.00068 20.9 3.8 58 14-71 31-92 (117)
374 PF02780 Transketolase_C: Tran 53.7 25 0.00054 21.1 3.4 35 13-47 10-45 (124)
375 KOG4700 Uncharacterized homolo 53.7 11 0.00025 25.1 1.9 38 54-91 101-139 (207)
376 PLN02790 transketolase 53.6 45 0.00097 26.4 5.5 89 13-101 541-641 (654)
377 cd08186 Fe-ADH8 Iron-containin 53.6 81 0.0018 23.0 6.6 70 13-83 27-102 (383)
378 PF11399 DUF3192: Protein of u 53.1 12 0.00027 22.4 1.9 17 64-80 79-95 (102)
379 cd03129 GAT1_Peptidase_E_like 52.9 65 0.0014 21.3 9.8 76 13-97 30-109 (210)
380 cd06389 PBP1_iGluR_AMPA_GluR2 52.6 86 0.0019 22.6 6.7 84 2-86 46-140 (370)
381 TIGR00011 YbaK_EbsC ybaK/ebsC 52.4 40 0.00086 21.1 4.3 23 28-50 2-24 (152)
382 cd00291 SirA_YedF_YeeD SirA, Y 52.2 35 0.00076 18.0 4.2 16 25-40 38-53 (69)
383 cd02978 KaiB_like KaiB-like fa 52.0 23 0.00051 19.8 2.8 36 15-50 4-46 (72)
384 TIGR03140 AhpF alkyl hydropero 52.0 20 0.00043 27.2 3.3 21 15-36 23-43 (515)
385 TIGR01686 FkbH FkbH-like domai 51.0 87 0.0019 22.2 7.6 71 3-76 37-113 (320)
386 COG1154 Dxs Deoxyxylulose-5-ph 51.0 59 0.0013 25.8 5.6 66 14-82 503-570 (627)
387 PF14237 DUF4339: Domain of un 51.0 21 0.00045 17.6 2.3 24 70-93 4-29 (45)
388 PF06053 DUF929: Domain of unk 50.8 11 0.00023 26.3 1.6 23 15-37 62-88 (249)
389 cd03034 ArsC_ArsC Arsenate Red 49.9 41 0.00088 20.1 3.9 59 23-81 35-105 (112)
390 cd08176 LPO Lactadehyde:propan 49.7 78 0.0017 23.0 6.0 48 13-60 29-80 (377)
391 COG1163 DRG Predicted GTPase [ 49.2 53 0.0011 24.2 4.8 60 26-87 201-261 (365)
392 cd08188 Fe-ADH4 Iron-containin 49.2 99 0.0022 22.5 6.4 69 13-82 29-102 (377)
393 PF07728 AAA_5: AAA domain (dy 49.0 38 0.00082 20.4 3.8 40 14-53 1-40 (139)
394 PF02966 DIM1: Mitosis protein 48.9 34 0.00074 21.6 3.4 57 16-77 25-87 (133)
395 PHA00729 NTP-binding motif con 48.0 89 0.0019 21.5 6.2 24 14-37 19-42 (226)
396 cd05564 PTS_IIB_chitobiose_lic 47.9 55 0.0012 19.0 4.5 57 24-80 14-85 (96)
397 TIGR00853 pts-lac PTS system, 47.7 56 0.0012 19.0 4.6 57 24-80 18-89 (95)
398 PF15616 TerY-C: TerY-C metal 47.6 5.3 0.00011 25.1 -0.3 15 17-31 74-88 (131)
399 KOG3170 Conserved phosducin-li 47.4 44 0.00095 22.9 4.0 54 16-74 116-169 (240)
400 COG5310 Homospermidine synthas 47.4 6 0.00013 29.1 -0.1 16 89-104 99-114 (481)
401 PF03470 zf-XS: XS zinc finger 46.6 5.5 0.00012 20.1 -0.3 6 23-28 1-6 (43)
402 PRK00766 hypothetical protein; 46.4 40 0.00088 22.6 3.7 44 38-81 43-86 (194)
403 PLN02234 1-deoxy-D-xylulose-5- 46.4 55 0.0012 26.0 5.0 70 14-87 546-618 (641)
404 PF15379 DUF4606: Domain of un 46.4 19 0.00041 21.7 1.9 21 15-35 26-46 (104)
405 TIGR03757 conj_TIGR03757 integ 46.0 37 0.0008 20.8 3.2 25 62-86 80-105 (113)
406 TIGR03521 GldG gliding-associa 46.0 91 0.002 24.1 6.0 49 2-50 39-97 (552)
407 TIGR02263 benz_CoA_red_C benzo 45.8 70 0.0015 23.5 5.2 20 28-47 342-361 (380)
408 PRK11892 pyruvate dehydrogenas 45.6 92 0.002 23.7 5.9 65 14-82 342-409 (464)
409 PF08874 DUF1835: Domain of un 45.6 66 0.0014 19.3 4.8 41 5-46 79-123 (124)
410 cd02977 ArsC_family Arsenate R 45.5 46 0.00099 19.4 3.6 29 52-80 77-105 (105)
411 PRK15116 sulfur acceptor prote 45.4 25 0.00055 24.7 2.8 23 17-39 169-192 (268)
412 PF11238 DUF3039: Protein of u 45.4 13 0.00029 19.9 1.1 13 21-33 45-57 (58)
413 PRK09590 celB cellobiose phosp 45.1 66 0.0014 19.2 4.8 65 24-88 16-101 (104)
414 CHL00144 odpB pyruvate dehydro 45.1 90 0.0019 22.5 5.6 65 14-82 203-270 (327)
415 COG4107 PhnK ABC-type phosphon 44.7 37 0.0008 23.0 3.3 71 28-100 130-202 (258)
416 PF01522 Polysacc_deac_1: Poly 44.3 17 0.00037 21.3 1.6 37 3-40 86-122 (123)
417 cd03033 ArsC_15kD Arsenate Red 44.3 36 0.00078 20.5 3.0 31 52-82 75-105 (113)
418 PLN02590 probable tyrosine dec 43.9 1.5E+02 0.0033 23.0 7.0 80 13-100 228-317 (539)
419 PF13353 Fer4_12: 4Fe-4S singl 43.7 19 0.00041 21.8 1.8 14 14-27 7-23 (139)
420 KOG3160 Gamma-interferon induc 43.1 21 0.00045 24.4 2.0 17 14-30 42-58 (220)
421 PLN02683 pyruvate dehydrogenas 43.1 89 0.0019 22.8 5.4 65 14-82 230-297 (356)
422 cd00002 YbaK_deacylase This CD 43.1 64 0.0014 20.2 4.2 23 28-50 3-25 (152)
423 COG4566 TtrR Response regulato 43.0 56 0.0012 22.1 3.9 32 42-75 53-85 (202)
424 PF01451 LMWPc: Low molecular 42.6 46 0.001 20.2 3.4 40 1-40 14-61 (138)
425 PF04805 Pox_E10: E10-like pro 42.5 27 0.00059 19.4 2.0 19 20-38 15-34 (70)
426 PLN02225 1-deoxy-D-xylulose-5- 42.4 94 0.002 25.1 5.7 64 14-82 569-635 (701)
427 cd06340 PBP1_ABC_ligand_bindin 42.1 71 0.0015 22.5 4.7 40 2-41 58-98 (347)
428 cd08182 HEPD Hydroxyethylphosp 41.6 1.3E+02 0.0029 21.7 7.0 77 4-81 12-93 (367)
429 PRK10624 L-1,2-propanediol oxi 41.4 1.4E+02 0.003 21.8 6.6 47 13-59 31-81 (382)
430 PLN02435 probable UDP-N-acetyl 40.9 1.7E+02 0.0037 22.7 6.7 66 37-103 175-264 (493)
431 TIGR02652 conserved hypothetic 40.3 9.4 0.0002 24.4 0.0 12 22-33 11-22 (163)
432 cd05565 PTS_IIB_lactose PTS_II 40.1 80 0.0017 18.7 4.8 54 25-78 16-84 (99)
433 PF09369 DUF1998: Domain of un 40.1 15 0.00032 20.7 0.8 36 64-99 32-67 (84)
434 PF09654 DUF2396: Protein of u 39.7 9.3 0.0002 24.3 -0.1 12 22-33 8-19 (161)
435 PLN02582 1-deoxy-D-xylulose-5- 39.6 1.3E+02 0.0028 24.2 6.1 66 14-82 545-611 (677)
436 TIGR03239 GarL 2-dehydro-3-deo 39.6 1.3E+02 0.0028 20.8 6.5 69 6-75 3-72 (249)
437 PRK15454 ethanol dehydrogenase 39.4 1.6E+02 0.0034 21.8 6.4 47 13-59 50-100 (395)
438 PRK08557 hypothetical protein; 39.0 1.7E+02 0.0036 22.1 7.9 73 2-74 166-242 (417)
439 TIGR03439 methyl_EasF probable 38.7 35 0.00076 24.6 2.7 30 18-47 80-114 (319)
440 CHL00195 ycf46 Ycf46; Provisio 38.7 97 0.0021 23.8 5.1 34 13-46 260-293 (489)
441 PF08599 Nbs1_C: DNA damage re 38.7 18 0.0004 19.7 1.0 31 62-98 13-44 (65)
442 PF02724 CDC45: CDC45-like pro 38.6 82 0.0018 24.9 4.9 67 14-87 1-70 (622)
443 COG1628 Endonuclease V homolog 38.6 70 0.0015 21.4 3.9 50 37-87 41-92 (185)
444 cd04732 HisA HisA. Phosphorib 38.4 1E+02 0.0023 20.4 4.9 61 28-90 33-95 (234)
445 KOG4498 Uncharacterized conser 38.4 35 0.00075 23.0 2.4 34 6-39 44-86 (197)
446 cd07973 Spt4 Transcription elo 38.4 41 0.00089 20.0 2.5 12 18-29 18-29 (98)
447 PF13364 BetaGal_dom4_5: Beta- 38.4 29 0.00063 20.7 2.0 17 65-81 62-78 (111)
448 PRK02935 hypothetical protein; 38.4 6.6 0.00014 23.8 -0.9 15 22-36 72-86 (110)
449 PF14606 Lipase_GDSL_3: GDSL-l 38.2 1.2E+02 0.0026 20.1 5.4 51 23-73 45-100 (178)
450 PLN02907 glutamate-tRNA ligase 38.1 2.2E+02 0.0048 23.1 7.6 55 15-87 3-59 (722)
451 cd04333 ProX_deacylase This CD 37.9 41 0.00088 20.9 2.7 21 27-47 2-22 (148)
452 cd08551 Fe-ADH iron-containing 37.7 1.6E+02 0.0034 21.3 6.5 68 13-81 24-96 (370)
453 PF07908 D-aminoacyl_C: D-amin 37.5 33 0.00072 17.4 1.8 16 65-80 18-33 (48)
454 PF04512 Baculo_PEP_N: Baculov 37.0 45 0.00097 19.8 2.5 25 65-89 3-28 (97)
455 COG3760 Uncharacterized conser 36.9 89 0.0019 20.3 4.0 47 27-74 6-52 (164)
456 PF14424 Toxin-deaminase: The 36.8 1.1E+02 0.0023 19.2 4.7 24 13-36 97-121 (133)
457 PRK14189 bifunctional 5,10-met 36.8 1.5E+02 0.0033 21.1 5.6 54 14-67 34-91 (285)
458 PTZ00494 tuzin-like protein; P 36.2 51 0.0011 25.7 3.3 44 7-50 388-433 (664)
459 PRK10558 alpha-dehydro-beta-de 36.2 1.5E+02 0.0032 20.6 6.8 70 5-75 9-79 (256)
460 cd02130 PA_ScAPY_like PA_ScAPY 36.0 98 0.0021 18.5 4.5 72 12-90 44-115 (122)
461 PRK10670 hypothetical protein; 35.8 91 0.002 19.9 4.1 22 28-49 3-24 (159)
462 TIGR02638 lactal_redase lactal 35.7 1.7E+02 0.0038 21.3 6.2 68 13-81 30-102 (379)
463 KOG4749 Inositol polyphosphate 35.5 88 0.0019 23.0 4.2 57 22-80 156-219 (375)
464 TIGR01917 gly_red_sel_B glycin 35.3 92 0.002 23.6 4.4 27 15-42 339-369 (431)
465 PF01206 TusA: Sulfurtransfera 35.2 72 0.0016 17.0 3.1 41 21-61 8-50 (70)
466 PRK14180 bifunctional 5,10-met 35.2 1.6E+02 0.0035 21.0 5.5 59 13-71 32-94 (282)
467 PF12949 HeH: HeH/LEM domain; 35.2 27 0.00058 16.7 1.2 15 27-41 7-21 (35)
468 COG1223 Predicted ATPase (AAA+ 35.1 91 0.002 22.6 4.2 63 10-74 149-218 (368)
469 KOG3857 Alcohol dehydrogenase, 35.1 1.7E+02 0.0036 22.0 5.6 77 14-90 72-152 (465)
470 cd04815 PA_M28_2 PA_M28_2: Pro 35.0 1.1E+02 0.0024 18.8 4.7 76 12-91 39-128 (134)
471 PF13451 zf-trcl: Probable zin 34.5 29 0.00063 18.0 1.3 13 21-33 34-46 (49)
472 COG1039 RnhC Ribonuclease HIII 34.5 1.8E+02 0.0038 21.0 5.7 49 24-72 171-219 (297)
473 cd08194 Fe-ADH6 Iron-containin 33.9 1.9E+02 0.004 21.1 6.6 49 13-61 24-76 (375)
474 TIGR01241 FtsH_fam ATP-depende 33.8 1.4E+02 0.0031 22.6 5.4 60 14-74 90-155 (495)
475 PRK14174 bifunctional 5,10-met 33.7 1.7E+02 0.0038 20.9 5.5 54 14-67 33-90 (295)
476 TIGR00734 hisAF_rel hisA/hisF 33.7 1.5E+02 0.0032 20.0 5.0 63 25-90 142-206 (221)
477 COG1454 EutG Alcohol dehydroge 33.6 2E+02 0.0044 21.4 6.4 58 4-61 18-82 (377)
478 PF03031 NIF: NLI interacting 33.5 79 0.0017 19.6 3.5 39 2-40 41-79 (159)
479 PRK14190 bifunctional 5,10-met 33.4 1.8E+02 0.0039 20.7 5.6 54 14-67 34-91 (284)
480 PRK12571 1-deoxy-D-xylulose-5- 33.2 1.8E+02 0.004 23.1 6.0 66 14-82 506-572 (641)
481 COG2256 MGS1 ATPase related to 33.1 1.7E+02 0.0038 22.2 5.5 70 6-76 39-114 (436)
482 PF00403 HMA: Heavy-metal-asso 33.1 75 0.0016 16.3 4.4 19 21-39 7-27 (62)
483 PF02662 FlpD: Methyl-viologen 33.0 1.2E+02 0.0026 18.6 6.7 81 14-101 1-91 (124)
484 PF11008 DUF2846: Protein of u 32.9 41 0.00089 20.2 2.0 16 65-80 40-55 (117)
485 cd01520 RHOD_YbbB Member of th 32.9 1.1E+02 0.0025 18.3 4.1 34 11-46 85-118 (128)
486 TIGR03191 benz_CoA_bzdO benzoy 32.7 95 0.0021 23.3 4.2 12 66-77 391-402 (430)
487 PRK14175 bifunctional 5,10-met 32.7 1.8E+02 0.004 20.7 5.6 58 14-71 34-95 (286)
488 cd06366 PBP1_GABAb_receptor Li 32.7 1E+02 0.0022 21.6 4.2 40 2-41 54-94 (350)
489 PRK14167 bifunctional 5,10-met 32.7 1.8E+02 0.004 20.8 5.5 58 14-71 33-94 (297)
490 KOG2244 Highly conserved prote 32.6 47 0.001 26.3 2.6 45 3-47 102-155 (786)
491 KOG3490 Transcription elongati 32.6 1.2E+02 0.0026 18.4 4.2 19 15-37 20-38 (111)
492 TIGR01918 various_sel_PB selen 32.6 1.1E+02 0.0024 23.2 4.4 36 5-41 328-368 (431)
493 PRK14169 bifunctional 5,10-met 32.5 1.9E+02 0.004 20.6 5.6 59 14-72 32-94 (282)
494 cd01896 DRG The developmentall 32.3 1.1E+02 0.0024 20.7 4.2 49 25-75 137-185 (233)
495 TIGR02251 HIF-SF_euk Dullard-l 32.3 1.1E+02 0.0025 19.4 4.1 35 2-36 47-81 (162)
496 PRK05899 transketolase; Review 32.3 1.6E+02 0.0036 23.1 5.6 85 13-101 511-611 (624)
497 PRK14191 bifunctional 5,10-met 32.3 1.9E+02 0.0041 20.6 5.5 46 22-67 45-90 (285)
498 PRK05771 V-type ATP synthase s 32.3 2.5E+02 0.0055 22.1 6.9 67 10-88 269-337 (646)
499 PRK10834 vancomycin high tempe 32.2 1.7E+02 0.0038 20.3 6.1 55 5-61 131-187 (239)
500 COG1543 Uncharacterized conser 32.2 30 0.00066 26.5 1.6 27 18-44 181-207 (504)
No 1
>PHA03050 glutaredoxin; Provisional
Probab=100.00 E-value=4.8e-36 Score=182.28 Aligned_cols=103 Identities=22% Similarity=0.432 Sum_probs=98.0
Q ss_pred CHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCC---CcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 1 MAMERVAKMASERPVVIFSKSSCCICHSIKTLFCDFGV---NPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 1 ~a~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v---~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
||.+++++++++++|+||+++|||||.+++.+|++.++ +|+++|++...+..++++.+.+.+|..|||+|||||++|
T Consensus 1 ~~~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~i 80 (108)
T PHA03050 1 MAEEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSI 80 (108)
T ss_pred ChHHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEE
Confidence 88999999999999999999999999999999999999 799999997666677889999999999999999999999
Q ss_pred eccHHHHhHHHcCCcHHHHhhcCCcc
Q 034075 78 GGANQVMSLHLNRSLIPMLKRVGAIW 103 (104)
Q Consensus 78 gg~~~~~~~~~~g~L~~~L~~~g~~~ 103 (104)
||++++.+++++|+|.++|+++|+++
T Consensus 81 GG~ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 81 GGYSDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred eChHHHHHHHHcCCHHHHHHHccccc
Confidence 99999999999999999999999987
No 2
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=100.00 E-value=4.6e-36 Score=180.00 Aligned_cols=98 Identities=60% Similarity=1.169 Sum_probs=93.7
Q ss_pred HHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhH
Q 034075 7 AKMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSL 86 (104)
Q Consensus 7 ~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~ 86 (104)
++++++++|+||++++||+|++++.+|++++++|+++|+|.+++..++++++.+.+++.|+|+|||||++|||++++.++
T Consensus 2 ~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred hhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 57889999999999999999999999999999999999999888888888999889999999999999999999999999
Q ss_pred HHcCCcHHHHhhcCCccC
Q 034075 87 HLNRSLIPMLKRVGAIWV 104 (104)
Q Consensus 87 ~~~g~L~~~L~~~g~~~~ 104 (104)
+++|+|+++|+++|++|+
T Consensus 82 ~~~G~L~~~l~~~~~~~~ 99 (99)
T TIGR02189 82 HISGSLVPMLKQAGALWL 99 (99)
T ss_pred HHcCCHHHHHHHhCcccC
Confidence 999999999999999985
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-34 Score=174.19 Aligned_cols=103 Identities=52% Similarity=0.913 Sum_probs=99.6
Q ss_pred CHHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEecc
Q 034075 1 MAMERVAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGA 80 (104)
Q Consensus 1 ~a~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~ 80 (104)
++.+++++++.+++|+||++++||+|++++.+|.+.++++.++++|.++++.+++++|.+.++.+|+|.|||+|++|||.
T Consensus 2 ~~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~ 81 (104)
T KOG1752|consen 2 AAEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGA 81 (104)
T ss_pred cHHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCH
Confidence 46678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHcCCcHHHHhhcCCcc
Q 034075 81 NQVMSLHLNRSLIPMLKRVGAIW 103 (104)
Q Consensus 81 ~~~~~~~~~g~L~~~L~~~g~~~ 103 (104)
+++.++|.+|+|.++|+.+|++|
T Consensus 82 ~dl~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 82 SDLMALHKSGELVPLLKEAGALW 104 (104)
T ss_pred HHHHHHHHcCCHHHHHHHhhccC
Confidence 99999999999999999999886
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=100.00 E-value=4.2e-34 Score=174.89 Aligned_cols=99 Identities=22% Similarity=0.496 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCCCEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEE
Q 034075 2 AMERVAKMASERPVVIFSK-----SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGEL 76 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~ 76 (104)
..+++++++++++|+||++ |+||||++++++|++++++|.++|++.++ +++++|.+.++++|||+|||||++
T Consensus 4 ~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~---~~~~~l~~~sg~~TVPQIFI~G~~ 80 (115)
T PRK10824 4 TIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP---DIRAELPKYANWPTFPQLWVDGEL 80 (115)
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH---HHHHHHHHHhCCCCCCeEEECCEE
Confidence 4688999999999999999 59999999999999999999999998654 488899999999999999999999
Q ss_pred EeccHHHHhHHHcCCcHHHHhhcCCcc
Q 034075 77 VGGANQVMSLHLNRSLIPMLKRVGAIW 103 (104)
Q Consensus 77 igg~~~~~~~~~~g~L~~~L~~~g~~~ 103 (104)
|||+|++.+++++|+|+++|+++|++|
T Consensus 81 IGG~ddl~~l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 81 VGGCDIVIEMYQRGELQQLIKETAAKY 107 (115)
T ss_pred EcChHHHHHHHHCCCHHHHHHHHHhhh
Confidence 999999999999999999999999875
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.97 E-value=7.1e-31 Score=156.95 Aligned_cols=91 Identities=27% Similarity=0.530 Sum_probs=84.2
Q ss_pred HHHHHHHhcCCCEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 3 MERVAKMASERPVVIFSK-----SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 3 ~~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
++++++++++++|+||++ ++||||.+++++|+++|++|+++|++.++ +.++++.+.++.+|+|+|||||++|
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~---~~~~~l~~~tg~~tvP~vfi~g~~i 78 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDP---EIRQGIKEYSNWPTIPQLYVKGEFV 78 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCH---HHHHHHHHHhCCCCCCEEEECCEEE
Confidence 578999999999999998 89999999999999999999999997553 4777888889999999999999999
Q ss_pred eccHHHHhHHHcCCcHHHH
Q 034075 78 GGANQVMSLHLNRSLIPML 96 (104)
Q Consensus 78 gg~~~~~~~~~~g~L~~~L 96 (104)
||++++.+++++|+|.++|
T Consensus 79 GG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 79 GGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred eChHHHHHHHHCcChHHhC
Confidence 9999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.96 E-value=1.3e-28 Score=145.32 Aligned_cols=85 Identities=29% Similarity=0.593 Sum_probs=78.2
Q ss_pred HHHHhcCCCEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEecc
Q 034075 6 VAKMASERPVVIFSK-----SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGA 80 (104)
Q Consensus 6 ~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~ 80 (104)
+++++++++|+||++ ++||+|.+++++|++.+++|+++|++.+ .++++++.+.++..|+|+|||||++|||+
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~---~~~~~~l~~~~g~~tvP~vfi~g~~iGG~ 77 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED---EEVRQGLKEYSNWPTFPQLYVNGELVGGC 77 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC---HHHHHHHHHHhCCCCCCEEEECCEEEeCH
Confidence 467889999999998 6999999999999999999999999865 34778898888999999999999999999
Q ss_pred HHHHhHHHcCCcH
Q 034075 81 NQVMSLHLNRSLI 93 (104)
Q Consensus 81 ~~~~~~~~~g~L~ 93 (104)
+++.+++++|+|+
T Consensus 78 ~~l~~l~~~g~L~ 90 (90)
T cd03028 78 DIVKEMHESGELQ 90 (90)
T ss_pred HHHHHHHHcCCcC
Confidence 9999999999985
No 7
>PTZ00062 glutaredoxin; Provisional
Probab=99.95 E-value=1.9e-27 Score=158.26 Aligned_cols=94 Identities=22% Similarity=0.509 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCCCEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEE
Q 034075 2 AMERVAKMASERPVVIFSK-----SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGEL 76 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~ 76 (104)
+.+++++++++++|++|++ |+||+|++++.+|++.+++|.++|++.++ ++++.+.+.++++|+|+|||||++
T Consensus 102 ~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~---~~~~~l~~~sg~~TvPqVfI~G~~ 178 (204)
T PTZ00062 102 TVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP---DLREELKVYSNWPTYPQLYVNGEL 178 (204)
T ss_pred HHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH---HHHHHHHHHhCCCCCCeEEECCEE
Confidence 5678999999999999999 69999999999999999999999998654 477889999999999999999999
Q ss_pred EeccHHHHhHHHcCCcHHHHhh
Q 034075 77 VGGANQVMSLHLNRSLIPMLKR 98 (104)
Q Consensus 77 igg~~~~~~~~~~g~L~~~L~~ 98 (104)
|||++++++|+++|+|.++|.+
T Consensus 179 IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 179 IGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred EcChHHHHHHHHcCChhhhhhh
Confidence 9999999999999999999865
No 8
>PRK10638 glutaredoxin 3; Provisional
Probab=99.94 E-value=8e-27 Score=135.66 Aligned_cols=82 Identities=27% Similarity=0.519 Sum_probs=74.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcCCc
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSL 92 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g~L 92 (104)
.+|++|++++||+|++++.+|++.+++|+++|++.+++ .++.+.+.++..++|++|+||+++||++++.+++.+|+|
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~---~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g~l 78 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA---KREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGL 78 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcCCH
Confidence 37999999999999999999999999999999986543 455677778889999999999999999999999999999
Q ss_pred HHHHh
Q 034075 93 IPMLK 97 (104)
Q Consensus 93 ~~~L~ 97 (104)
.++|+
T Consensus 79 ~~~~~ 83 (83)
T PRK10638 79 DPLLK 83 (83)
T ss_pred HHHhC
Confidence 99885
No 9
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.8e-26 Score=135.75 Aligned_cols=96 Identities=28% Similarity=0.533 Sum_probs=89.6
Q ss_pred HHHHHHHHhcCCCEEEEEc-----CCChhHHHHHHHHHhcC-CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE
Q 034075 2 AMERVAKMASERPVVIFSK-----SSCCICHSIKTLFCDFG-VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~-v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
+.+++++.++.++|++|-+ |.|.|+.++..+|...| ++|..+||-.+++ +|+.+++++.|+|+|++||||+
T Consensus 4 i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~e---iR~~lk~~s~WPT~PQLyi~GE 80 (105)
T COG0278 4 ILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPE---IRQGLKEYSNWPTFPQLYVNGE 80 (105)
T ss_pred HHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHH---HHhccHhhcCCCCCceeeECCE
Confidence 3578999999999999998 78999999999999999 8999999987765 8889999999999999999999
Q ss_pred EEeccHHHHhHHHcCCcHHHHhhcC
Q 034075 76 LVGGANQVMSLHLNRSLIPMLKRVG 100 (104)
Q Consensus 76 ~igg~~~~~~~~~~g~L~~~L~~~g 100 (104)
+|||+|-+.+|+++|+|+++|++++
T Consensus 81 fvGG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 81 FVGGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred EeccHHHHHHHHHcchHHHHHHhcC
Confidence 9999999999999999999999875
No 10
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.94 E-value=1.6e-26 Score=132.97 Aligned_cols=79 Identities=30% Similarity=0.554 Sum_probs=71.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcCCcHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIP 94 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~ 94 (104)
|++|++++||+|++++.+|+++|++|+++|++.++. .++.+...++..++|+||+||+++||++++.+++++|+|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~---~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l~~ 77 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA---LRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKLDP 77 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH---HHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCChhh
Confidence 689999999999999999999999999999986653 44566667778999999999999999999999999999998
Q ss_pred HH
Q 034075 95 ML 96 (104)
Q Consensus 95 ~L 96 (104)
+|
T Consensus 78 ~l 79 (79)
T TIGR02181 78 LL 79 (79)
T ss_pred hC
Confidence 75
No 11
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.94 E-value=7.4e-26 Score=130.95 Aligned_cols=82 Identities=33% Similarity=0.654 Sum_probs=76.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCC--cEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcCCc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVN--PAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSL 92 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~--~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g~L 92 (104)
|++|+++|||+|++++++|++.+++ |+.++++.+++..++++++.+.++..++|++|+||+++||++++.+++++|+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~g~l 80 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKSGKL 80 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCh
Confidence 6899999999999999999999999 99999998777667778888888889999999999999999999999999999
Q ss_pred HHHH
Q 034075 93 IPML 96 (104)
Q Consensus 93 ~~~L 96 (104)
.++|
T Consensus 81 ~~~~ 84 (84)
T TIGR02180 81 AELL 84 (84)
T ss_pred hhhC
Confidence 9875
No 12
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.93 E-value=2.8e-25 Score=128.19 Aligned_cols=81 Identities=46% Similarity=0.825 Sum_probs=75.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcCCcH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLI 93 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g~L~ 93 (104)
+|++|++++||+|.+++++|++.+++|+.++++.+++..++++.+.+.++..++|++|++|+++||++++.++.++|+|+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~g~l~ 80 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKSGKLV 80 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHcCCcc
Confidence 58999999999999999999999999999999988776667778888888999999999999999999999999999997
Q ss_pred H
Q 034075 94 P 94 (104)
Q Consensus 94 ~ 94 (104)
+
T Consensus 81 ~ 81 (82)
T cd03419 81 K 81 (82)
T ss_pred C
Confidence 6
No 13
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.4e-25 Score=127.29 Aligned_cols=79 Identities=29% Similarity=0.484 Sum_probs=70.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcCCcH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLI 93 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g~L~ 93 (104)
.|+||++++||||.+++++|+++|++|++++++.++. .+.++.+.+.+|.+|+|+||+||+++||++++.++...|.|.
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~~~l~ 80 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKLD 80 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhhccCC
Confidence 6899999999999999999999999999999997764 446677777778899999999999999999999998888763
No 14
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.92 E-value=9.1e-25 Score=138.87 Aligned_cols=83 Identities=25% Similarity=0.499 Sum_probs=73.0
Q ss_pred CEEEEEcC------CChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcC----CCCCccEEEECCEEEeccHHH
Q 034075 14 PVVIFSKS------SCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLG----CSPAVPAVFIGGELVGGANQV 83 (104)
Q Consensus 14 ~v~vf~~~------~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~----~~~tvP~ifi~g~~igg~~~~ 83 (104)
+|+||+++ +||+|.+++.+|++++|+|.++||+.+++ .++.|.+.. +..++|+|||+|++|||++++
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~---~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSG---FREELRELLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHH---HHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 58999999 99999999999999999999999997654 334455443 358999999999999999999
Q ss_pred HhHHHcCCcHHHHhhc
Q 034075 84 MSLHLNRSLIPMLKRV 99 (104)
Q Consensus 84 ~~~~~~g~L~~~L~~~ 99 (104)
.+|+++|+|.++|+.+
T Consensus 78 ~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 78 LRLNESGELRKLLKGI 93 (147)
T ss_pred HHHHHcCCHHHHHhhc
Confidence 9999999999999875
No 15
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.91 E-value=5.7e-24 Score=120.97 Aligned_cols=74 Identities=27% Similarity=0.515 Sum_probs=64.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCC-CccEEEECCEEEeccHHHHhHHHcC
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSP-AVPAVFIGGELVGGANQVMSLHLNR 90 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~-tvP~ifi~g~~igg~~~~~~~~~~g 90 (104)
+|++|++++||+|++++.+|++++++|+++|++.++ +.++.+.+..+.. ++|++|++|+++||++++.+++++|
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~---~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g 75 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP---ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG 75 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH---HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence 589999999999999999999999999999998653 2444555554555 9999999999999999999999987
No 16
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.90 E-value=1.4e-23 Score=121.01 Aligned_cols=76 Identities=29% Similarity=0.556 Sum_probs=65.4
Q ss_pred HHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 8 KMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 8 ~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
++.++++|++|++++||+|++++.+|+++|++|+++|++.+++.. .+...++..++|++|+||+++||++++.++.
T Consensus 3 ~~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~----~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l 78 (79)
T TIGR02190 3 QARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGR----SLRAVTGATTVPQVFIGGKLIGGSDELEAYL 78 (79)
T ss_pred CcCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHH----HHHHHHCCCCcCeEEECCEEEcCHHHHHHHh
Confidence 345678999999999999999999999999999999998664432 3455577899999999999999999998764
No 17
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.90 E-value=2e-23 Score=118.53 Aligned_cols=71 Identities=27% Similarity=0.512 Sum_probs=64.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
+|++|+.++||+|++++.+|++.|++|+.+|++.+++ .++.+.+.++..++|++|+||++|||++++.+|+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~---~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPE---RKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhc
Confidence 6899999999999999999999999999999987654 4556777777799999999999999999998875
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.89 E-value=4.6e-23 Score=116.73 Aligned_cols=70 Identities=29% Similarity=0.540 Sum_probs=62.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
+|+||++++||+|.+++.+|++++++|+++|++.++.. ..+...++..++|++|+||+++||++++.++.
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~----~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITG----RSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhH----HHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence 69999999999999999999999999999999876532 34566678899999999999999999998874
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.88 E-value=1.9e-22 Score=146.27 Aligned_cols=88 Identities=22% Similarity=0.353 Sum_probs=75.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHH-----hcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQ-----RLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~-----~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
.+|+||++++||+|+++|++|++.|++|+++||+.++...++.+... ..+|..|||+|||||++|||++++.+
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~-- 79 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA-- 79 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH--
Confidence 47999999999999999999999999999999997765544433332 23577899999999999999999987
Q ss_pred HcCCcHHHHhhcCCc
Q 034075 88 LNRSLIPMLKRVGAI 102 (104)
Q Consensus 88 ~~g~L~~~L~~~g~~ 102 (104)
.+|+|.++|++.|+.
T Consensus 80 ~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 80 RAGEVIARVKGSSLT 94 (410)
T ss_pred HhCCHHHHhcCCccc
Confidence 899999999988764
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.87 E-value=6.5e-22 Score=115.75 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=59.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEeecCCCchhHHHHHHhcCCC--CCccEEEECCEEEeccHHHHhHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFG-----VNPAVYELDEMPGGRELEQDLQRLGCS--PAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~~~--~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
|+||+++|||+|.+++++|++++ ++|+.+|++.+.. .++.+.+.++. .++|+||+||+++||++++.+++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~---~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~ 78 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGI---SKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLV 78 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHH---HHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHH
Confidence 79999999999999999999985 5677777764321 12345555554 79999999999999999999998
Q ss_pred HcC
Q 034075 88 LNR 90 (104)
Q Consensus 88 ~~g 90 (104)
+++
T Consensus 79 ~~~ 81 (86)
T TIGR02183 79 KEN 81 (86)
T ss_pred Hhc
Confidence 765
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.87 E-value=1e-21 Score=114.49 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=60.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHh-----cCCCcEEEEeecCCCchhHHHHHHhcCCC--CCccEEEECCEEEeccHHHHhH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCD-----FGVNPAVYELDEMPGGRELEQDLQRLGCS--PAVPAVFIGGELVGGANQVMSL 86 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~-----~~v~~~~~~vd~~~~~~~~~~~l~~~~~~--~tvP~ifi~g~~igg~~~~~~~ 86 (104)
+|+||++++||+|++++++|++ .+++|+.+|++.++.. ++.+.+..+. .++|+||+||+++||++++.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~---~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGIS---KADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHH---HHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 6899999999999999999999 7999999999865422 2234444443 7999999999999999999998
Q ss_pred HHc
Q 034075 87 HLN 89 (104)
Q Consensus 87 ~~~ 89 (104)
++.
T Consensus 79 ~~~ 81 (85)
T PRK11200 79 VKE 81 (85)
T ss_pred HHH
Confidence 764
No 22
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.1e-21 Score=129.09 Aligned_cols=93 Identities=24% Similarity=0.515 Sum_probs=86.9
Q ss_pred HHHHHHhcCCCEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEe
Q 034075 4 ERVAKMASERPVVIFSK-----SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVG 78 (104)
Q Consensus 4 ~~~~~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~ig 78 (104)
+.+.+.++.++|++|-+ |.|.+.+++..+|++.|++|..+||..+++ +|+.++.++.|+|+|++||||+|+|
T Consensus 130 ~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~Dee---lRqglK~fSdWPTfPQlyI~GEFiG 206 (227)
T KOG0911|consen 130 NRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEE---LRQGLKEFSDWPTFPQLYVKGEFIG 206 (227)
T ss_pred HHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHH---HHHHhhhhcCCCCccceeECCEecc
Confidence 47888999999999998 689999999999999999999999987766 8889999999999999999999999
Q ss_pred ccHHHHhHHHcCCcHHHHhhc
Q 034075 79 GANQVMSLHLNRSLIPMLKRV 99 (104)
Q Consensus 79 g~~~~~~~~~~g~L~~~L~~~ 99 (104)
|+|-+.+|+++|+|+..|+++
T Consensus 207 GlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 207 GLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred CcHHHHHHhhcccHHHHhhcC
Confidence 999999999999999999864
No 23
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.85 E-value=6.8e-21 Score=106.31 Aligned_cols=71 Identities=37% Similarity=0.680 Sum_probs=63.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
+|++|++++||+|++++.+|++++++|..+|++.+++ .++.+.+.++..++|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---LREELKELSGWPTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---HHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhh
Confidence 5899999999999999999999999999999986654 5567777778899999999999999999998875
No 24
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.82 E-value=3e-20 Score=101.71 Aligned_cols=60 Identities=30% Similarity=0.597 Sum_probs=54.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
|++|++++||+|.+++.+|++.|++|+++|++.++ +.++.+.+.++..++|++|+||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~---~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE---EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH---HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch---hHHHHHHHHcCCCccCEEEECCEEC
Confidence 78999999999999999999999999999999776 3666777776889999999999986
No 25
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.81 E-value=2.2e-19 Score=106.13 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=67.1
Q ss_pred EEEEEcCC------ChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcC----CCCCccEEEECCEEEeccHHHH
Q 034075 15 VVIFSKSS------CCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLG----CSPAVPAVFIGGELVGGANQVM 84 (104)
Q Consensus 15 v~vf~~~~------Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~----~~~tvP~ifi~g~~igg~~~~~ 84 (104)
|++|+++- =-.|.+++.+|+.++|+|+++||+.+++ .++.+.+.+ +.+++|+||+||+++||++++.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~---~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEE---NRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHH---HHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 67777753 3478899999999999999999997665 344555543 4589999999999999999999
Q ss_pred hHHHcCCcHHHHh
Q 034075 85 SLHLNRSLIPMLK 97 (104)
Q Consensus 85 ~~~~~g~L~~~L~ 97 (104)
++.++|+|.++|+
T Consensus 79 ~l~e~g~L~~lLk 91 (92)
T cd03030 79 EAKENNTLEEFLK 91 (92)
T ss_pred HHHhCCCHHHHhC
Confidence 9999999999986
No 26
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.77 E-value=1.6e-18 Score=98.15 Aligned_cols=63 Identities=21% Similarity=0.400 Sum_probs=54.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE-EEeccH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE-LVGGAN 81 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~-~igg~~ 81 (104)
|++|++++||+|++++++|++.|++|+++|++.++. ..+.+... |..++|+++++|. +++|++
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~---~~~~~~~~-g~~~vP~v~~~g~~~~~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPE---AIDYVKAQ-GFRQVPVIVADGDLSWSGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHH---HHHHHHHc-CCcccCEEEECCCcEEeccC
Confidence 589999999999999999999999999999997654 34456554 6689999999775 999996
No 27
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.77 E-value=2.7e-18 Score=99.44 Aligned_cols=64 Identities=20% Similarity=0.419 Sum_probs=55.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGAN 81 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~ 81 (104)
+|++|++++||+|++++.+|++.|++|+++|++.+++ ..+.+.. .+..++|+++++|..++|++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~---~~~~~~~-~g~~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPE---AAETLRA-QGFRQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHH---HHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence 6899999999999999999999999999999997654 3334544 46789999999999999996
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.65 E-value=7.4e-16 Score=86.23 Aligned_cols=65 Identities=15% Similarity=0.369 Sum_probs=54.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGAN 81 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~ 81 (104)
+|++|+.+|||+|++++.+|++.+++|..+|++.++. ..+.+.+..+..++|+++++|+.++|++
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~---~~~~~~~~~~~~~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSA---AREEVLKVLGQRGVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHH---HHHHHHHHhCCCcccEEEECCEEEeeCC
Confidence 4899999999999999999999999999999986543 2234444456689999999999998875
No 29
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.62 E-value=4.1e-15 Score=83.05 Aligned_cols=66 Identities=27% Similarity=0.515 Sum_probs=56.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
++++|+.+|||+|++++.+|++.+++|..++++.++. ..+.+.+.++..++|+++++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~---~~~~~~~~~~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPE---ALEELKKLNGYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHH---HHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence 4899999999999999999999999999999986433 34456666667899999999999999874
No 30
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=4e-15 Score=101.72 Aligned_cols=87 Identities=25% Similarity=0.416 Sum_probs=74.9
Q ss_pred CCEEEEEcC------CChhHHHHHHHHHhcCCCcEEEEeecCCCch-hHHHHHHhcCCCCCccEEEECCEEEeccHHHHh
Q 034075 13 RPVVIFSKS------SCCICHSIKTLFCDFGVNPAVYELDEMPGGR-ELEQDLQRLGCSPAVPAVFIGGELVGGANQVMS 85 (104)
Q Consensus 13 ~~v~vf~~~------~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~-~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~ 85 (104)
+.|+||+++ +=-.|..++.+|+..+|.|.+.||+.+.... ++++.+.......++|++||+|++|||.+++..
T Consensus 131 ~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~ 210 (281)
T KOG2824|consen 131 DRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVR 210 (281)
T ss_pred ceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhh
Confidence 469999985 5778999999999999999999999887643 366666554456899999999999999999999
Q ss_pred HHHcCCcHHHHhhc
Q 034075 86 LHLNRSLIPMLKRV 99 (104)
Q Consensus 86 ~~~~g~L~~~L~~~ 99 (104)
|++.|+|.++|+++
T Consensus 211 LnE~GkL~~lL~~~ 224 (281)
T KOG2824|consen 211 LNEEGKLGKLLKGI 224 (281)
T ss_pred hhhcchHHHHHhcC
Confidence 99999999999875
No 31
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.57 E-value=1e-14 Score=82.62 Aligned_cols=65 Identities=14% Similarity=0.351 Sum_probs=52.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcC-CCCCccEEEE-CCEEEeccH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLG-CSPAVPAVFI-GGELVGGAN 81 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~-~~~tvP~ifi-~g~~igg~~ 81 (104)
+|++|+++|||+|++++.+|++.+++|+.+|++.++. ..+.+...+ +..++|++++ +|..+...+
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~---~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEG---AADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHh---HHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 4899999999999999999999999999999986654 234455554 6789999976 667776554
No 32
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.55 E-value=1.3e-14 Score=80.61 Aligned_cols=58 Identities=19% Similarity=0.338 Sum_probs=46.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEe
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDF-----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVG 78 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~ig 78 (104)
+|++|+++|||+|++++++|++. ++++..+|++.+++ +.+..+..++|+++++|++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~-------l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD-------LADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh-------HHHHcCCcccCEEEECCEEEE
Confidence 48999999999999999999876 56777777765432 334456689999999999875
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.37 E-value=3.6e-12 Score=76.15 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=57.9
Q ss_pred CEEEEEcCCC------hhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcC---------CCCCccEEEECCEEEe
Q 034075 14 PVVIFSKSSC------CICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLG---------CSPAVPAVFIGGELVG 78 (104)
Q Consensus 14 ~v~vf~~~~C------p~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~---------~~~tvP~ifi~g~~ig 78 (104)
.|.||+++.- ..|.++..+|+..+|+|+.+||..+++. ++.+.+.. +.+-.|+||.+|+++|
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~---r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEA---RQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHH---HHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHH---HHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 4678887543 3567899999999999999999875553 33444332 4456689999999999
Q ss_pred ccHHHHhHHHcCCcHHHHh
Q 034075 79 GANQVMSLHLNRSLIPMLK 97 (104)
Q Consensus 79 g~~~~~~~~~~g~L~~~L~ 97 (104)
+++++.++.++|+|.+.|+
T Consensus 79 dye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 79 DYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EHHHHHHHHCTT-HHHHHT
T ss_pred eHHHHHHHHhhCHHHHHhC
Confidence 9999999999999999986
No 34
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.33 E-value=2.1e-11 Score=66.73 Aligned_cols=68 Identities=13% Similarity=0.160 Sum_probs=57.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSL 86 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~ 86 (104)
++|+.++||+|.+++.+|+..+++|+.++++..+.... .+...++..++|+++.+|..+++...+.++
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999999999999986554332 355566779999999999999998877665
No 35
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.32 E-value=2.1e-11 Score=69.52 Aligned_cols=71 Identities=8% Similarity=0.205 Sum_probs=56.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE--CCEEEeccHHHHhHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI--GGELVGGANQVMSLHL 88 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi--~g~~igg~~~~~~~~~ 88 (104)
+++|+.++||+|++++..|+++|++|+.++++.... ..+.+...++..++|++.. +|..+.+.+.+.++.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~---~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSP---KRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChH---HHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 689999999999999999999999999999864322 2234555667789999987 3678888888877654
No 36
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.30 E-value=7.7e-12 Score=73.51 Aligned_cols=69 Identities=17% Similarity=0.321 Sum_probs=52.5
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 3 MERVAKMASERPVVIFSKSSCCICHSIKTLFCDF-----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 3 ~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
.+.++++-++-.|.+|+.+|||+|..+.+++++. ++++..+|++..++ +....+..++|++++||+.+
T Consensus 4 ~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e-------~a~~~~V~~vPt~vidG~~~ 76 (89)
T cd03026 4 LEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD-------EVEERGIMSVPAIFLNGELF 76 (89)
T ss_pred HHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH-------HHHHcCCccCCEEEECCEEE
Confidence 4566666666679999999999999999998665 57777888775432 33345568999999999876
Q ss_pred e
Q 034075 78 G 78 (104)
Q Consensus 78 g 78 (104)
+
T Consensus 77 ~ 77 (89)
T cd03026 77 G 77 (89)
T ss_pred E
Confidence 4
No 37
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.30 E-value=2.5e-11 Score=67.96 Aligned_cols=68 Identities=9% Similarity=0.142 Sum_probs=54.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC-CEEEeccHHHHhHHH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG-GELVGGANQVMSLHL 88 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~-g~~igg~~~~~~~~~ 88 (104)
.+|+.++||+|.+++-+|..+|++|+.+.++..... ..++ .++..++|+++.+ |..+++...+.++.+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~----~~~~-~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA----TPIR-MIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH----HHHH-hcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 589999999999999999999999999988743321 1222 3456899999987 889999998887754
No 38
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.30 E-value=3.2e-11 Score=68.48 Aligned_cols=69 Identities=13% Similarity=0.364 Sum_probs=55.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC----CEEEeccHHHHhHHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG----GELVGGANQVMSLHL 88 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~----g~~igg~~~~~~~~~ 88 (104)
++.+|+.+.||+|++++.+|.++|++|+.++++... . ..++ .++..++|+++.+ |..+.....+.++.+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~----~~~~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-R----KEIK-WSSYKKVPILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-H----HHHH-HhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence 578999999999999999999999999999886322 1 1233 3566899999987 778888888777654
No 39
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.22 E-value=2.2e-10 Score=64.23 Aligned_cols=67 Identities=13% Similarity=0.276 Sum_probs=54.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC-CEEEeccHHHHhH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG-GELVGGANQVMSL 86 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~-g~~igg~~~~~~~ 86 (104)
++|+.++||+|.+++.+|.++|++|+.++++..... +.+.+.+...++|++..+ |..+.....+.++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~----~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKP----AEMLAASPKGTVPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCC----HHHHHHCCCCCCCEEEECCCcEEecHHHHHHh
Confidence 689999999999999999999999999999864332 234455677899999996 8888777666554
No 40
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.22 E-value=1.5e-10 Score=66.14 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=41.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHh----cCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE-EEecc
Q 034075 14 PVVIFSKSSCCICHSIKTLFCD----FGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE-LVGGA 80 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~-~igg~ 80 (104)
.|++|+++|||+|+.+++.|.+ .+..+....+|.+.+. + +.+..+..++|+++++|+ .+.|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-~----~~~~~~v~~vPt~~~~g~~~~~G~ 68 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-Q----KAMEYGIMAVPAIVINGDVEFIGA 68 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-H----HHHHcCCccCCEEEECCEEEEecC
Confidence 4789999999999999999864 3444444445433221 1 223356689999999997 33443
No 41
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.19 E-value=3.6e-10 Score=63.28 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=56.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
+++|+.+.||+|.+++.+|.+.|++|+.++++...... .+.+.+...++|++..+|..+.....+.++..
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPE----DLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCH----HHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 47899999999999999999999999999887543322 34445666899999999988888877776644
No 42
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.14 E-value=3.7e-10 Score=69.90 Aligned_cols=77 Identities=12% Similarity=0.188 Sum_probs=51.4
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhc----CCCcEEEEeecCC--C---chhHHHHHHhcC---CCCCccE
Q 034075 4 ERVAKMASERP--VVIFSKSSCCICHSIKTLFCDF----GVNPAVYELDEMP--G---GRELEQDLQRLG---CSPAVPA 69 (104)
Q Consensus 4 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~~~vd~~~--~---~~~~~~~l~~~~---~~~tvP~ 69 (104)
+.+.+.+++.+ ++.|+++|||+|+.+.+.|.+. ++++..+|+|.+. + ..++++....+. +..++|+
T Consensus 14 ~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT 93 (122)
T TIGR01295 14 VRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPT 93 (122)
T ss_pred HHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCE
Confidence 45666666544 7789999999999988888543 5778888888543 1 123444444432 3456898
Q ss_pred E--EECCEEEecc
Q 034075 70 V--FIGGELVGGA 80 (104)
Q Consensus 70 i--fi~g~~igg~ 80 (104)
+ |-+|+.++..
T Consensus 94 ~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 94 FVHITDGKQVSVR 106 (122)
T ss_pred EEEEeCCeEEEEE
Confidence 7 5699776554
No 43
>PHA02125 thioredoxin-like protein
Probab=99.12 E-value=4.5e-10 Score=63.77 Aligned_cols=55 Identities=15% Similarity=0.372 Sum_probs=41.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
|++|+++|||+|+.++++|++. .+..+++|.+.. ..+....+..++|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~-----~~l~~~~~v~~~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEG-----VELTAKHHIRSLPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCC-----HHHHHHcCCceeCeEE-CCEEE
Confidence 7899999999999999999864 566777775443 1344445668999987 77644
No 44
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.12 E-value=5e-10 Score=62.60 Aligned_cols=71 Identities=8% Similarity=0.239 Sum_probs=53.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE-CCEEEeccHHHHhH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI-GGELVGGANQVMSL 86 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi-~g~~igg~~~~~~~ 86 (104)
+.+|+.++||+|++++-+|..+|++|+.+.++...... ..+.+.+.+...++|++.+ +|..+.....+..+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQ-RSPEFLAKNPAGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCcc-CCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence 36899999999999999999999999999887532211 1123555677789999997 66677777666554
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.12 E-value=1.3e-09 Score=63.77 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=57.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC-CEEEeccHHHHhHH
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG-GELVGGANQVMSLH 87 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~-g~~igg~~~~~~~~ 87 (104)
..+++|+.+.||+|.+++.+|...|++|+.++++..... +.+...+...++|++.++ |..+.....+.++.
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~----~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yL 88 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKP----DWFLEKNPQGKVPALEIDEGKVVYESLIICEYL 88 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCc----HHHHhhCCCCCcCEEEECCCCEEECHHHHHHhh
Confidence 458999999999999999999999999999998754321 234555667899999998 88888877776653
No 46
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.10 E-value=1.2e-09 Score=61.36 Aligned_cols=72 Identities=14% Similarity=0.262 Sum_probs=56.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
+.+|+.+.||+|++++-+|.+.|++|+.++++..... ...+.+...+...++|++..+|..+.....+..+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGE-HLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCC-cCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHH
Confidence 4689999999999999999999999999988753221 11234555666689999999988888777776654
No 47
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.05 E-value=2.1e-09 Score=60.82 Aligned_cols=68 Identities=10% Similarity=0.204 Sum_probs=57.7
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 17 IFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
+|+.++||+|.+++-+|..+|++|+.++++..... +.+.+.+...++|++..+|..+.+...+.++.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~----~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKR----PEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTS----HHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccch----hHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence 58899999999999999999999999999855432 345566777999999999999999988877654
No 48
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.04 E-value=5.7e-10 Score=63.58 Aligned_cols=54 Identities=22% Similarity=0.537 Sum_probs=40.2
Q ss_pred EEEEEcCCChhHHHHH----HHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 15 VVIFSKSSCCICHSIK----TLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~----~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
|.+|+ +|||.|+.+. +++++++.++++++++..+ + ..+ .+..++|++++||+.+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~------~-a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMN------E-ILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH------H-HHH-cCCCcCCEEEECCEEE
Confidence 55665 9999999994 4667788999998888211 1 233 4569999999999754
No 49
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=99.03 E-value=9.6e-10 Score=66.18 Aligned_cols=47 Identities=17% Similarity=0.371 Sum_probs=38.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCC-chhHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPG-GRELEQDLQRL 61 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~-~~~~~~~l~~~ 61 (104)
|++|+.++||+|++++++|++.|++|+++|+..++. ..++++.+...
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 579999999999999999999999999999976554 34455555443
No 50
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=99.03 E-value=3.6e-10 Score=68.86 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=38.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCc-hhHHHHHHh
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGG-RELEQDLQR 60 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~-~~~~~~l~~ 60 (104)
|++|+.++||+|++++++|++.|++|+++|+..++.. .++.+.++.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 5799999999999999999999999999999876644 345555543
No 51
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=99.02 E-value=2.4e-09 Score=67.02 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=33.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCC
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPG 50 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~ 50 (104)
|++|+.++||+|++++++|++.|++|+++|+..++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~ 37 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPL 37 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChh
Confidence 789999999999999999999999999999976543
No 52
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.99 E-value=6.7e-09 Score=57.91 Aligned_cols=71 Identities=15% Similarity=0.314 Sum_probs=54.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSL 86 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~ 86 (104)
+++|+.+.||+|.+++-+|...|++|+.++++..... ...+.+.+.+...++|++..+|..+.....+.++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGE-TRTPEFLALNPNGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcc-cCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 3689999999999999999999999999998753211 1112344556668999999999988877766654
No 53
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.98 E-value=1.3e-09 Score=66.54 Aligned_cols=59 Identities=24% Similarity=0.444 Sum_probs=40.1
Q ss_pred HHHhcCCCEEEE-EcCCChhHHHHHHHHHhcC-----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 7 AKMASERPVVIF-SKSSCCICHSIKTLFCDFG-----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 7 ~~~~~~~~v~vf-~~~~Cp~C~~~~~~L~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
+.+....++++| +++|||+|+.++++|++.. +++..+|++..+ .+....+..++|++++
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-------~l~~~~~v~~vPt~~i 81 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-------EKAEKYGVERVPTTIF 81 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-------HHHHHcCCCcCCEEEE
Confidence 345454556555 7799999999999997664 345555655332 3445566799999977
No 54
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.88 E-value=2.1e-08 Score=62.80 Aligned_cols=35 Identities=17% Similarity=0.381 Sum_probs=32.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCC
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMP 49 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~ 49 (104)
|+||+.++|+.|++++++|++.|++|+++|+..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCc
Confidence 78999999999999999999999999999997654
No 55
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.88 E-value=2e-08 Score=62.98 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=32.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCC
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMP 49 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~ 49 (104)
|+||+.++|+.|++++++|++.|++|+++|+..++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCC
Confidence 78999999999999999999999999999997644
No 56
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.87 E-value=1.8e-08 Score=61.63 Aligned_cols=45 Identities=20% Similarity=0.370 Sum_probs=36.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCC-CchhHHHHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMP-GGRELEQDLQ 59 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~-~~~~~~~~l~ 59 (104)
+++|+.++||+|++++++|++.|++|+++|+..++ +..++.+.++
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~ 47 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS 47 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence 78999999999999999999999999999997654 3333444444
No 57
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.87 E-value=7.4e-09 Score=62.56 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=39.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCC-CchhHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMP-GGRELEQDLQRL 61 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~-~~~~~~~~l~~~ 61 (104)
|++|+.|+|+.|++++++|++.|++|+++|+..++ ...++++.++..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~ 48 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKV 48 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHh
Confidence 57999999999999999999999999999997654 445566666543
No 58
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.85 E-value=2.4e-08 Score=61.11 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=44.4
Q ss_pred HHHHHHhc--CCC--EEEEEcCCChhHHHHHHHHHhcC------CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--E
Q 034075 4 ERVAKMAS--ERP--VVIFSKSSCCICHSIKTLFCDFG------VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--F 71 (104)
Q Consensus 4 ~~~~~~~~--~~~--v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--f 71 (104)
+.+++.+. .++ |+-|+++|||.|+.+.+.|++.. +.+-.+|+|..+ .+....+..++|++ |
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~-------~la~~~~V~~iPTf~~f 75 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVP-------DFNKMYELYDPPTVMFF 75 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCH-------HHHHHcCCCCCCEEEEE
Confidence 34555554 233 55699999999999999996553 234445555443 24444556889987 6
Q ss_pred ECCEEEe
Q 034075 72 IGGELVG 78 (104)
Q Consensus 72 i~g~~ig 78 (104)
-+|+.++
T Consensus 76 k~G~~v~ 82 (114)
T cd02954 76 FRNKHMK 82 (114)
T ss_pred ECCEEEE
Confidence 6888764
No 59
>PHA02278 thioredoxin-like protein
Probab=98.85 E-value=4.9e-08 Score=58.77 Aligned_cols=73 Identities=18% Similarity=0.322 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhc------CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EE
Q 034075 3 MERVAKMASERP--VVIFSKSSCCICHSIKTLFCDF------GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FI 72 (104)
Q Consensus 3 ~~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi 72 (104)
.+.+++.+...+ ++-|+++||+.|+.+.+.|++. .+++..+|+|.++... +.+.+..+..++|++ |-
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~---~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDR---EKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccccc---HHHHHHCCCccccEEEEEE
Confidence 345566655443 5678999999999999988654 2345566776543211 124444456888877 56
Q ss_pred CCEEEe
Q 034075 73 GGELVG 78 (104)
Q Consensus 73 ~g~~ig 78 (104)
||+.++
T Consensus 81 ~G~~v~ 86 (103)
T PHA02278 81 DGQLVK 86 (103)
T ss_pred CCEEEE
Confidence 888663
No 60
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.85 E-value=3.1e-08 Score=55.94 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=56.4
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
+++|..+.||+|.+++-.|.++|++|+.++++...... ..+.+.+.+...++|++..||..+.....+.++.
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~-~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEH-NEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCcc-CCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHh
Confidence 46899999999999999999999999999887543211 1123556677789999999999888887776653
No 61
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.84 E-value=4.2e-08 Score=54.88 Aligned_cols=58 Identities=14% Similarity=0.129 Sum_probs=48.7
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHc
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLN 89 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~ 89 (104)
++||+|.+++.+|+..|++|+.++++... .+....+|++..+|..+.++..+.++.++
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 38999999999999999999999987432 34457899999999999999888776543
No 62
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.84 E-value=4.7e-09 Score=64.40 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=38.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCc-hhHHHHHHhcC
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGG-RELEQDLQRLG 62 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~-~~~~~~l~~~~ 62 (104)
|++|+.++||+|++++++|++.|++|+++|+..++.. .++.+.++..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLE 49 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcC
Confidence 5799999999999999999999999999999766543 33555554443
No 63
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.82 E-value=8.2e-08 Score=54.05 Aligned_cols=73 Identities=10% Similarity=0.063 Sum_probs=57.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
+++|+.+.||+|.+++-+|...|++|+.+.++..... ...+.+.+.+...++|++..+|..+.....+.++..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 5799999999999999999999999999888754211 111345556677899999999988888887777654
No 64
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.80 E-value=1.2e-08 Score=68.58 Aligned_cols=57 Identities=21% Similarity=0.331 Sum_probs=39.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCDFG-----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
+-.|++|+++|||+|..++.++++.. +.+..+|++..+ .+....+..++|+++++++
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~-------~~~~~~~V~~vPtl~i~~~ 195 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENP-------DLAEKYGVMSVPKIVINKG 195 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCH-------HHHHHhCCccCCEEEEecC
Confidence 33477799999999999999997653 333344444322 2344456789999988754
No 65
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.80 E-value=1.1e-07 Score=53.47 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=54.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCC-CCCccEEEECCEEEeccHHHHhHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGC-SPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~-~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
+.+|+.+.||+|.+++-+|...|++|+.++++...... .+.+.+. ..++|++..+|..+.....+.++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~----~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSE----LLLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCH----HHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 36899999999999999999999999998877542222 2333444 4789999999888888877776644
No 66
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.79 E-value=2.4e-08 Score=61.06 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=38.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCC-CchhHHHHHHh
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMP-GGRELEQDLQR 60 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~-~~~~~~~~l~~ 60 (104)
.|++|+.|.|+.|++++++|++.|++|+++|+-.++ +..++++.++.
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~ 48 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGD 48 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHH
Confidence 478999999999999999999999999999986544 44555555553
No 67
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.79 E-value=1.7e-08 Score=75.52 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=49.4
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 3 MERVAKMASERPVVIFSKSSCCICHSIKTLFCDFG-----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 3 ~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
++.++++-++..|.+|.+++||||..+...+++.. |+.+.+|....++ +....+..+||++|+||+.+
T Consensus 108 ~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~-------~~~~~~v~~VP~~~i~~~~~ 180 (517)
T PRK15317 108 IEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQD-------EVEARNIMAVPTVFLNGEEF 180 (517)
T ss_pred HHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHh-------HHHhcCCcccCEEEECCcEE
Confidence 56677666677799999999999999999987664 3334444433332 33344568999999999865
Q ss_pred e
Q 034075 78 G 78 (104)
Q Consensus 78 g 78 (104)
.
T Consensus 181 ~ 181 (517)
T PRK15317 181 G 181 (517)
T ss_pred E
Confidence 3
No 68
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.78 E-value=8.3e-08 Score=56.58 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=52.4
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
..||||++++-.|.++|++|+.+++|...... .+.+.+....+|++..+|..+...+.+.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~----~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPE----DLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCH----HHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 47999999999999999999999998654333 35555666899999999999998888877654
No 69
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.76 E-value=1e-07 Score=56.78 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=39.5
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHHH-------HhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 4 ERVAKMASERP--VVIFSKSSCCICHSIKTLF-------CDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 4 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L-------~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
+.+.+.+++++ ++.|+++|||+|+.+...+ +..+-.+..+.+|.+.+..... .+.+..+..++|++++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~-~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEIT-ALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHH-HHHHHcCCCCCCEEEE
Confidence 34566666666 5679999999999988654 1122134444444332221122 3334445689998743
No 70
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.75 E-value=3.6e-08 Score=58.02 Aligned_cols=70 Identities=24% Similarity=0.347 Sum_probs=46.2
Q ss_pred HHHHHHhcC-CC--EEEEEcCCChhHHHHHHHHHhc----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECC
Q 034075 4 ERVAKMASE-RP--VVIFSKSSCCICHSIKTLFCDF----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGG 74 (104)
Q Consensus 4 ~~~~~~~~~-~~--v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g 74 (104)
+.+++.+.. ++ ++.|+++|||+|+.+++.|.+. +-++....+|.+.. . .+.+..+...+|++ |-+|
T Consensus 7 ~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-~----~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 7 ENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-K----ELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp TTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-H----HHHHHTTCSSSSEEEEEETT
T ss_pred HHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhcc-c----hhhhccCCCCCCEEEEEECC
Confidence 445555554 33 6789999999999999998543 33566666765433 2 24444456889988 4577
Q ss_pred EEEe
Q 034075 75 ELVG 78 (104)
Q Consensus 75 ~~ig 78 (104)
+.+.
T Consensus 82 ~~~~ 85 (103)
T PF00085_consen 82 KEVK 85 (103)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 7654
No 71
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.74 E-value=4.7e-08 Score=59.63 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=44.5
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECC
Q 034075 4 ERVAKMASERP--VVIFSKSSCCICHSIKTLFCDF-----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGG 74 (104)
Q Consensus 4 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g 74 (104)
+.+.+.+.+++ ++.|+.+|||.|+.+...|.+. ++.+..+|++..+ .+.+..+..++|++ |-+|
T Consensus 13 ~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~-------~l~~~~~v~~vPt~l~fk~G 85 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP-------FLVEKLNIKVLPTVILFKNG 85 (113)
T ss_pred HHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH-------HHHHHCCCccCCEEEEEECC
Confidence 45555555443 5678889999999999998664 3444444444333 23333455888877 6699
Q ss_pred EEEecc
Q 034075 75 ELVGGA 80 (104)
Q Consensus 75 ~~igg~ 80 (104)
+.++..
T Consensus 86 ~~v~~~ 91 (113)
T cd02989 86 KTVDRI 91 (113)
T ss_pred EEEEEE
Confidence 866443
No 72
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.73 E-value=3.2e-07 Score=52.81 Aligned_cols=53 Identities=21% Similarity=0.490 Sum_probs=38.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcC----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECC
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFG----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGG 74 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g 74 (104)
++++|++++|+.|..++.+|.+.. +.++.+||+.++ .+...++ ..+|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~-------~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDP-------ELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTH-------HHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCH-------HHHHHhc-CCCCEEEEcC
Confidence 489999999999999999998654 345566666332 2444455 6899999999
No 73
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.71 E-value=1.9e-08 Score=75.22 Aligned_cols=70 Identities=14% Similarity=0.306 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCC-----cEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 3 MERVAKMASERPVVIFSKSSCCICHSIKTLFCDFGVN-----PAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 3 ~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~-----~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
++.++++-++..|.+|.++.||||..+...+++..+. .+.+|....+ +...+ .+..+||++|+||+.+
T Consensus 109 ~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~------~~~~~-~~v~~VP~~~i~~~~~ 181 (515)
T TIGR03140 109 IDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQ------DEVEA-LGIQGVPAVFLNGEEF 181 (515)
T ss_pred HHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH------HHHHh-cCCcccCEEEECCcEE
Confidence 4566666666679999999999999999999776443 3333333222 23333 4558999999999866
Q ss_pred ec
Q 034075 78 GG 79 (104)
Q Consensus 78 gg 79 (104)
..
T Consensus 182 ~~ 183 (515)
T TIGR03140 182 HN 183 (515)
T ss_pred Ee
Confidence 43
No 74
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.69 E-value=2.3e-07 Score=51.93 Aligned_cols=68 Identities=9% Similarity=0.179 Sum_probs=52.4
Q ss_pred EEEEEcCCChhHHHHHHHHHh--cCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE-CCEEEeccHHHHhH
Q 034075 15 VVIFSKSSCCICHSIKTLFCD--FGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI-GGELVGGANQVMSL 86 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~--~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi-~g~~igg~~~~~~~ 86 (104)
+.+|+.+.||+|.+++-.|.. .|++|+.+.++...... .+...+...++|++.. +|..+.....+.++
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~----~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDE----SLLAVNPLGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCCh----HHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence 368999999999999999999 89999999987433222 2334556689999985 77788777766654
No 75
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.1e-08 Score=62.39 Aligned_cols=56 Identities=29% Similarity=0.371 Sum_probs=41.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC------CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFG------VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~i 77 (104)
+|.|+++||..|+.+.+.|+++. +++-.+|+|.+.+ ++..++...+|++ |.||+.+
T Consensus 65 lVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e-------la~~Y~I~avPtvlvfknGe~~ 128 (150)
T KOG0910|consen 65 LVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE-------LAEDYEISAVPTVLVFKNGEKV 128 (150)
T ss_pred EEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc-------hHhhcceeeeeEEEEEECCEEe
Confidence 67899999999999999997763 3344566665554 4445667899987 6799755
No 76
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.67 E-value=1.9e-07 Score=53.22 Aligned_cols=57 Identities=23% Similarity=0.319 Sum_probs=40.0
Q ss_pred EEEEEcCCChhHHHHHHHHHh-----cCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE--CCEEEe
Q 034075 15 VVIFSKSSCCICHSIKTLFCD-----FGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI--GGELVG 78 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~-----~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi--~g~~ig 78 (104)
+++|+++||++|+.+.+.+++ .++.+..+|++..++ .... .+..++|++++ +|+.++
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~-~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE------LAEE-YGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh------HHHh-cCcccccEEEEEECCEEEE
Confidence 788999999999999999976 556666666664332 2223 34578998765 787443
No 77
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.67 E-value=5.2e-08 Score=73.51 Aligned_cols=67 Identities=18% Similarity=0.338 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEE
Q 034075 3 MERVAKMASERPVVIFSKSSCCICHSIKTLFCDF-----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGEL 76 (104)
Q Consensus 3 ~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~ 76 (104)
++.++++-++..|.+|.+++||+|.++...+++. +++.+.+|+...++ +.+..+..+||.++|||+.
T Consensus 468 ~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~-------~~~~~~v~~vP~~~i~~~~ 539 (555)
T TIGR03143 468 LEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD-------LKDEYGIMSVPAIVVDDQQ 539 (555)
T ss_pred HHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH-------HHHhCCceecCEEEECCEE
Confidence 4556655556679999999999999988877543 57777777775543 3434567999999999974
No 78
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.66 E-value=1.3e-07 Score=52.80 Aligned_cols=67 Identities=12% Similarity=0.210 Sum_probs=49.4
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE-CCEEEeccHHHHhHHH
Q 034075 22 SCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI-GGELVGGANQVMSLHL 88 (104)
Q Consensus 22 ~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi-~g~~igg~~~~~~~~~ 88 (104)
.||+|+++.-+|..+|++|+...+...+......+.+.+.++..++|++.. +|+.+.....+.++.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 499999999999999999998777443222211123566677799999998 8999998888877754
No 79
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.66 E-value=2.7e-07 Score=51.38 Aligned_cols=70 Identities=13% Similarity=0.228 Sum_probs=54.1
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSL 86 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~ 86 (104)
++|+.+.||.|.+++-+|...|++|+.+.++...... ..+.+.+.+...++|++..+|..+.....+..+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQ-LSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCc-CChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence 6888899999999999999999999998887533211 112344556678999999999988877776655
No 80
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.63 E-value=2.7e-07 Score=55.19 Aligned_cols=72 Identities=18% Similarity=0.140 Sum_probs=43.4
Q ss_pred HHHHHHHhcC--CC--EEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--E
Q 034075 3 MERVAKMASE--RP--VVIFSKSSCCICHSIKTLFCDF-----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--F 71 (104)
Q Consensus 3 ~~~~~~~~~~--~~--v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--f 71 (104)
.+.+++.+.. ++ ++.|+.+||+.|+...+.|.+. ++.+-.+|+|.++. .++ +.+..+..++|++ |
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~---~~~-l~~~~~V~~~Pt~~~~ 78 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDS---TME-LCRREKIIEVPHFLFY 78 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChH---HHH-HHHHcCCCcCCEEEEE
Confidence 3455666543 33 5679999999999999988654 23344444443321 222 3333455888976 4
Q ss_pred ECCEEEe
Q 034075 72 IGGELVG 78 (104)
Q Consensus 72 i~g~~ig 78 (104)
-+|+.+.
T Consensus 79 ~~G~~v~ 85 (103)
T cd02985 79 KDGEKIH 85 (103)
T ss_pred eCCeEEE
Confidence 5887553
No 81
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.63 E-value=7.3e-08 Score=54.79 Aligned_cols=54 Identities=19% Similarity=0.456 Sum_probs=36.5
Q ss_pred CEEEEEcCCChhHHHHHHHH----HhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEE
Q 034075 14 PVVIFSKSSCCICHSIKTLF----CDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGEL 76 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~ 76 (104)
+|.+ ..++||+|..+.+.+ .+.+++++.+++ .+. .+ +.+ .+..++|+++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~---~~-~~~-ygv~~vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDF---EE-IEK-YGVMSVPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTH---HH-HHH-TT-SSSSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCH---HH-HHH-cCCCCCCEEEECCEE
Confidence 3667 567799999887766 455766766665 222 22 333 456999999999984
No 82
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.62 E-value=2.7e-07 Score=64.15 Aligned_cols=68 Identities=22% Similarity=0.472 Sum_probs=55.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
++++|....||||-+++.+|+-.+++|.+++|+.-. ++.++ .+.+..||.+.+.|+.+...+-++.+.
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~-----r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~l 157 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL-----RQEIK-WSSYKKVPILLIRGEQMVDSSVIISLL 157 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchh-----hhhcc-ccccccccEEEeccceechhHHHHHHH
Confidence 699999999999999999999999999999998532 22333 356799999999998777776665554
No 83
>PTZ00051 thioredoxin; Provisional
Probab=98.62 E-value=2.6e-07 Score=54.25 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhcC---CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCE
Q 034075 3 MERVAKMASERP--VVIFSKSSCCICHSIKTLFCDFG---VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGE 75 (104)
Q Consensus 3 ~~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~---v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~ 75 (104)
++.++++++.++ ++.|+.+||+.|+.+.+.|.+.. ..+..+.+|.+.. .+...+ .+..++|++ |-+|+
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~----~~~~~~-~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL----SEVAEK-ENITSMPTFKVFKNGS 82 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch----HHHHHH-CCCceeeEEEEEeCCe
Confidence 466777777766 56799999999999999886531 1233344443222 123333 345788876 45776
Q ss_pred EEecc
Q 034075 76 LVGGA 80 (104)
Q Consensus 76 ~igg~ 80 (104)
.++.+
T Consensus 83 ~~~~~ 87 (98)
T PTZ00051 83 VVDTL 87 (98)
T ss_pred EEEEE
Confidence 65443
No 84
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.61 E-value=4.3e-07 Score=55.12 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=41.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCC---cEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCEEEeccHHHHh
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVN---PAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGELVGGANQVMS 85 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~igg~~~~~~ 85 (104)
++.|+++||+.|+.+.+.|++..-. ...+.+|.+.. + +.+..+..++|++ |.+|+.++...-...
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~----l~~~~~i~~~Pt~~~f~~G~~v~~~~G~~~ 97 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--F----LVNYLDIKVLPTLLVYKNGELIDNIVGFEE 97 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--H----HHHhcCCCcCCEEEEEECCEEEEEEecHHH
Confidence 5679999999999999998654222 23344443322 2 3444455788977 679987765543333
No 85
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.60 E-value=1.1e-06 Score=49.38 Aligned_cols=71 Identities=13% Similarity=0.048 Sum_probs=56.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
++++|..+.|+.|.+++-+|.+.|++|+.+.++.. . ..+.+...+...++|++..+|..+.+...+..+..
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~-~---~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE-E---WQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH-H---hhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 35788888999999999999999999999988742 1 22335556667899999999999988887777654
No 86
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.60 E-value=4.8e-07 Score=53.48 Aligned_cols=68 Identities=15% Similarity=0.230 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE--CCE
Q 034075 3 MERVAKMASERPVVIFSKSSCCICHSIKTLFCDFG-----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI--GGE 75 (104)
Q Consensus 3 ~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi--~g~ 75 (104)
.+.+++.++...++.|+++|||+|+++.+.+++.. ..+....+|.+.. . .+....+..++|++++ +|+
T Consensus 8 ~~~f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~-~----~~~~~~~i~~~Pt~~~~~~g~ 82 (101)
T cd02994 8 DSNWTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE-P----GLSGRFFVTALPTIYHAKDGV 82 (101)
T ss_pred hhhHHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC-H----hHHHHcCCcccCEEEEeCCCC
Confidence 34566777777788999999999999999886542 2233334433222 1 2333334588998864 554
No 87
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.57 E-value=1.9e-07 Score=55.07 Aligned_cols=58 Identities=22% Similarity=0.444 Sum_probs=37.1
Q ss_pred EEEEEcCCChhHHHHHHHHHh----cC--CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE--ECCEEEec
Q 034075 15 VVIFSKSSCCICHSIKTLFCD----FG--VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF--IGGELVGG 79 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~----~~--v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if--i~g~~igg 79 (104)
+++|+++|||.|+.+.+.+++ .+ +.+..+|++..+ .+....+..++|+++ -+|+.++.
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-------~l~~~~~v~~vPt~~i~~~g~~v~~ 82 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-------EIAEAAGIMGTPTVQFFKDKELVKE 82 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-------HHHHHCCCeeccEEEEEECCeEEEE
Confidence 567899999999999999865 22 334444444322 233334458899774 47776543
No 88
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.57 E-value=9.4e-07 Score=49.85 Aligned_cols=63 Identities=10% Similarity=0.129 Sum_probs=51.1
Q ss_pred EEEEEcC-------CChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 15 VVIFSKS-------SCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 15 v~vf~~~-------~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
+++|..+ .||+|.+++.+|...|++|+.++++.. ..+...++|++..+|+.+.+...+.++.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 4677776 579999999999999999998887631 2345688999999999999888777665
Q ss_pred H
Q 034075 88 L 88 (104)
Q Consensus 88 ~ 88 (104)
.
T Consensus 71 ~ 71 (75)
T cd03080 71 E 71 (75)
T ss_pred H
Confidence 4
No 89
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.57 E-value=4.3e-07 Score=52.23 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=50.7
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC-CEEEeccHHHHhHHH
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG-GELVGGANQVMSLHL 88 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~-g~~igg~~~~~~~~~ 88 (104)
++||+|.+++-+|...|++|+.+.++.... ......+ ..+....+|++..+ |..+.+...+.++..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~-~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDI-PPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCc-ccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 689999999999999999999988874322 2222233 44566899999988 888988888877654
No 90
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=98.55 E-value=1.3e-06 Score=49.21 Aligned_cols=73 Identities=10% Similarity=0.111 Sum_probs=55.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
+++|+.+.+|.|+++.-+|...|++|+.+.++..... ...+.+...+....+|++..+|..+.....+..+..
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGE-QLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCC-cCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 3689999999999999999999999999888753221 111234455667899999988888877777766543
No 91
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.55 E-value=8.6e-07 Score=51.85 Aligned_cols=70 Identities=16% Similarity=0.209 Sum_probs=44.1
Q ss_pred HHHHHHHhcCC--C--EEEEEcCCChhHHHHHHHHHhc----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EE
Q 034075 3 MERVAKMASER--P--VVIFSKSSCCICHSIKTLFCDF----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FI 72 (104)
Q Consensus 3 ~~~~~~~~~~~--~--v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi 72 (104)
++.+++.+... + ++.|+.+||+.|+++...|++. ...+..+.+|.+.. . .+....+..++|++ |.
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-~----~~~~~~~i~~~Pt~~~~~ 76 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-P----EISEKFEITAVPTFVFFR 76 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-H----HHHHhcCCccccEEEEEE
Confidence 34556666554 3 5779999999999999988653 33455555554332 1 23333445889976 56
Q ss_pred CCEEE
Q 034075 73 GGELV 77 (104)
Q Consensus 73 ~g~~i 77 (104)
+|+.+
T Consensus 77 ~g~~~ 81 (97)
T cd02984 77 NGTIV 81 (97)
T ss_pred CCEEE
Confidence 77754
No 92
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.54 E-value=3.9e-07 Score=61.18 Aligned_cols=66 Identities=17% Similarity=0.381 Sum_probs=43.5
Q ss_pred HHHhcCCCEEEEEc---CCChhHHHHHHHHHhcC-----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE--CCEE
Q 034075 7 AKMASERPVVIFSK---SSCCICHSIKTLFCDFG-----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI--GGEL 76 (104)
Q Consensus 7 ~~~~~~~~v~vf~~---~~Cp~C~~~~~~L~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi--~g~~ 76 (104)
+.+-..-.+++|+. +|||+|+.+.+++++.. +++..+++|.+.. ..+.+..+..++|++.+ ||+.
T Consensus 15 ~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-----~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 15 KELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-----KEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred HhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-----HHHHHHcCCCccCEEEEEeCCee
Confidence 33433445788988 99999999999996653 3445666664432 23444456689998855 6544
Q ss_pred E
Q 034075 77 V 77 (104)
Q Consensus 77 i 77 (104)
+
T Consensus 90 ~ 90 (215)
T TIGR02187 90 G 90 (215)
T ss_pred e
Confidence 3
No 93
>PRK09381 trxA thioredoxin; Provisional
Probab=98.54 E-value=2.3e-06 Score=51.24 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=38.2
Q ss_pred EEEEEcCCChhHHHHHHHHHh----cCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE--ECCEEEecc
Q 034075 15 VVIFSKSSCCICHSIKTLFCD----FGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF--IGGELVGGA 80 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~----~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if--i~g~~igg~ 80 (104)
++.|+++|||.|+.+.+.|++ ++-.+....+|.+... .+....+..++|+++ -+|+.++.+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-----GTAPKYGIRGIPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-----hHHHhCCCCcCCEEEEEeCCeEEEEe
Confidence 677999999999999888854 3323344444433221 122334568999884 488877533
No 94
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=4.9e-07 Score=51.01 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=46.7
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHH-----------hcCCCCCccEEEECC-EEEec
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQ-----------RLGCSPAVPAVFIGG-ELVGG 79 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~-----------~~~~~~tvP~ifi~g-~~igg 79 (104)
+-++|++..||.|..+...|++.+++|++++|...- .++++.|. +..|+..+|.+..++ +.|-|
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm--~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~ 78 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESM--ANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG 78 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCCceeeehhhhh--hhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence 348999999999999999999999999999996421 11222221 125678999998755 55544
No 95
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=5.5e-07 Score=62.95 Aligned_cols=60 Identities=20% Similarity=0.258 Sum_probs=44.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhc----CCCcE--EEEeecCCCchhHHHHHHhcCCCCCccEE--EECCEEEeccH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF----GVNPA--VYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGELVGGAN 81 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~----~v~~~--~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~igg~~ 81 (104)
+|.||.|||+.|+...++|.+. +=.|. .+|+|.++. +...-|..++|++ |++|++|.||.
T Consensus 47 lV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~-------vAaqfgiqsIPtV~af~dGqpVdgF~ 114 (304)
T COG3118 47 LVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPM-------VAAQFGVQSIPTVYAFKDGQPVDGFQ 114 (304)
T ss_pred EEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchh-------HHHHhCcCcCCeEEEeeCCcCccccC
Confidence 6779999999999999999655 33344 456665553 3334456899987 79999998884
No 96
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.51 E-value=2.9e-06 Score=50.56 Aligned_cols=69 Identities=20% Similarity=0.252 Sum_probs=42.0
Q ss_pred HHHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhc----CC-CcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EEC
Q 034075 3 MERVAKMASERP--VVIFSKSSCCICHSIKTLFCDF----GV-NPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIG 73 (104)
Q Consensus 3 ~~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~v-~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~ 73 (104)
.+.+.+.+++++ ++.|+++|||.|+.+.+.|.+. +- ......+|.+ . .+ +.+..+..++|++ |-+
T Consensus 7 ~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-~~----~~~~~~v~~~Pt~~~~~~ 80 (102)
T cd02948 7 QEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-ID----TLKRYRGKCEPTFLFYKN 80 (102)
T ss_pred HHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-HH----HHHHcCCCcCcEEEEEEC
Confidence 345666666555 5679999999999999888543 21 1234444433 2 11 2233345888866 568
Q ss_pred CEEE
Q 034075 74 GELV 77 (104)
Q Consensus 74 g~~i 77 (104)
|+.+
T Consensus 81 g~~~ 84 (102)
T cd02948 81 GELV 84 (102)
T ss_pred CEEE
Confidence 8754
No 97
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.50 E-value=7e-07 Score=59.62 Aligned_cols=69 Identities=12% Similarity=0.144 Sum_probs=53.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE-ECCEEEeccHHHHhHHHc
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF-IGGELVGGANQVMSLHLN 89 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if-i~g~~igg~~~~~~~~~~ 89 (104)
++|+.+.||+|.+++-+|..+|++|+.++++..... ..+ +.+...++|++. .||..+.+...+.++..+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~~----~~~-~~np~g~vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDEE----TPI-RMIGAKQVPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcch----hHH-HhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence 368889999999999999999999999887543321 122 335558999997 788899999888776654
No 98
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.50 E-value=9.8e-07 Score=52.91 Aligned_cols=68 Identities=13% Similarity=0.171 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhcCC----------CcEEEEeecCCCchhHHHHHHhcCCCCCccEE
Q 034075 3 MERVAKMASERP--VVIFSKSSCCICHSIKTLFCDFGV----------NPAVYELDEMPGGRELEQDLQRLGCSPAVPAV 70 (104)
Q Consensus 3 ~~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~v----------~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i 70 (104)
.+.+++.+++++ ++.|+++||++|+++.+.+++..- .+....+|-+.. . .+....+..++|++
T Consensus 8 ~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~----~l~~~~~v~~~Ptl 82 (108)
T cd02996 8 SGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-S----DIADRYRINKYPTL 82 (108)
T ss_pred HhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-H----HHHHhCCCCcCCEE
Confidence 355667776665 567999999999999988854310 233444443332 1 23334456899987
Q ss_pred --EECCE
Q 034075 71 --FIGGE 75 (104)
Q Consensus 71 --fi~g~ 75 (104)
|-+|+
T Consensus 83 ~~~~~g~ 89 (108)
T cd02996 83 KLFRNGM 89 (108)
T ss_pred EEEeCCc
Confidence 45666
No 99
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.50 E-value=5.9e-07 Score=55.26 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=40.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCC-CchhHHHHHHhcC
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMP-GGRELEQDLQRLG 62 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~-~~~~~~~~l~~~~ 62 (104)
.|++|+.|.|.-|++++++|++.|++|+++|+...+ +..++.+.++..+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g 51 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLG 51 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcC
Confidence 489999999999999999999999999999986654 4455666555443
No 100
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.49 E-value=1.3e-06 Score=53.56 Aligned_cols=71 Identities=14% Similarity=0.398 Sum_probs=43.2
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHh------cCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE-E--
Q 034075 4 ERVAKMASERP--VVIFSKSSCCICHSIKTLFCD------FGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF-I-- 72 (104)
Q Consensus 4 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~------~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if-i-- 72 (104)
+.++....+++ ++.|+++||++|+.+.+.+.+ .+..|..++++.+++. ..+.+...+ ..+|+++ +
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~--~~~~~~~~g--~~vPt~~f~~~ 85 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP--KDEEFSPDG--GYIPRILFLDP 85 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc--hhhhcccCC--CccceEEEECC
Confidence 34455555554 566899999999999988865 3446777888765432 112221111 2489874 4
Q ss_pred CCEEEe
Q 034075 73 GGELVG 78 (104)
Q Consensus 73 ~g~~ig 78 (104)
+|+.++
T Consensus 86 ~Gk~~~ 91 (117)
T cd02959 86 SGDVHP 91 (117)
T ss_pred CCCCch
Confidence 566544
No 101
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.49 E-value=1.7e-06 Score=48.23 Aligned_cols=70 Identities=17% Similarity=0.090 Sum_probs=54.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
+++|..+.|+.|.+++-+|...|++|+.+.++.... .. ..+...+...++|++..+|..+.....+.++.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~-~~--~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEW-PE--LDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHh-hh--hhhccCCcCCCCCEEEECCEEEEecHHHHHHh
Confidence 367888999999999999999999999998874321 11 22445566789999999999888887776654
No 102
>PRK10026 arsenate reductase; Provisional
Probab=98.49 E-value=6e-07 Score=56.88 Aligned_cols=49 Identities=16% Similarity=0.361 Sum_probs=40.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecC-CCchhHHHHHHhc
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEM-PGGRELEQDLQRL 61 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~-~~~~~~~~~l~~~ 61 (104)
..|++|+.+.|.-|++++++|++.|++|+++|+-.+ +...+++..++..
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~ 51 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADM 51 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhC
Confidence 358999999999999999999999999999998554 4555566666543
No 103
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.49 E-value=2.2e-06 Score=48.83 Aligned_cols=72 Identities=8% Similarity=0.181 Sum_probs=54.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC---CEEEeccHHHHhHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG---GELVGGANQVMSLHL 88 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~---g~~igg~~~~~~~~~ 88 (104)
+++|+.+. |+|.+++-+|...|++|+.+.++..... ...+.+...+...++|++..+ |..+.....+.++..
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~-~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGE-QKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCc-ccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 57898886 9999999999999999999888743211 111234455667899999887 778887777776643
No 104
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.48 E-value=2.1e-06 Score=50.83 Aligned_cols=68 Identities=16% Similarity=0.256 Sum_probs=42.5
Q ss_pred HHHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhcC------CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EE
Q 034075 3 MERVAKMASERP--VVIFSKSSCCICHSIKTLFCDFG------VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FI 72 (104)
Q Consensus 3 ~~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi 72 (104)
.+.+++.+...+ ++.|+++|||+|+.+.+.+.+.. +.+-.+|++..+ .+.+..+..++|++ |-
T Consensus 8 ~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~-------~~~~~~~v~~~Pt~~~~~ 80 (101)
T cd03003 8 RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDR-------MLCRSQGVNSYPSLYVFP 80 (101)
T ss_pred HhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccH-------HHHHHcCCCccCEEEEEc
Confidence 345666666555 56799999999999999985542 223344544322 23333445889988 45
Q ss_pred CCEEE
Q 034075 73 GGELV 77 (104)
Q Consensus 73 ~g~~i 77 (104)
+|+.+
T Consensus 81 ~g~~~ 85 (101)
T cd03003 81 SGMNP 85 (101)
T ss_pred CCCCc
Confidence 77643
No 105
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=98.48 E-value=1.9e-06 Score=57.48 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
+..+++|+.+.||+|.+++-+|.+.|++|+.+.++..... +.+...+...++|++..+|..+-....+..+..
T Consensus 8 ~~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~----~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~ 80 (211)
T PRK09481 8 RSVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLP----QDLIDLNPYQSVPTLVDRELTLYESRIIMEYLD 80 (211)
T ss_pred CCeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCC----HHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHH
Confidence 3358899999999999999999999999999998853222 234445556899999999988887777666543
No 106
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=98.48 E-value=6.3e-07 Score=55.81 Aligned_cols=46 Identities=13% Similarity=0.171 Sum_probs=37.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecC-CCchhHHHHHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEM-PGGRELEQDLQ 59 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~-~~~~~~~~~l~ 59 (104)
.+++|+.+.|.-|++++++|++.|++|+++|+-.. ++..+++..++
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~ 48 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFG 48 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHH
Confidence 47899999999999999999999999999998543 44444555444
No 107
>PRK10853 putative reductase; Provisional
Probab=98.48 E-value=5.2e-07 Score=55.58 Aligned_cols=47 Identities=11% Similarity=0.163 Sum_probs=39.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecC-CCchhHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEM-PGGRELEQDLQRL 61 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~-~~~~~~~~~l~~~ 61 (104)
+++|+.+.|..|++++++|++.|++|+++|+-.. ++..++.+.+...
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~ 49 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDEL 49 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHc
Confidence 7899999999999999999999999999998554 4555566666543
No 108
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.47 E-value=5.4e-07 Score=55.10 Aligned_cols=47 Identities=28% Similarity=0.457 Sum_probs=38.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecC-CCchhHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEM-PGGRELEQDLQRL 61 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~-~~~~~~~~~l~~~ 61 (104)
|++|+.+.|+-|++++++|++.|++|+++|+... +...++++.++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~ 48 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKL 48 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHc
Confidence 5799999999999999999999999999998554 4555566666544
No 109
>PRK10387 glutaredoxin 2; Provisional
Probab=98.47 E-value=1.2e-06 Score=58.06 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=54.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE-EECCEEEeccHHHHhHHHc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV-FIGGELVGGANQVMSLHLN 89 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i-fi~g~~igg~~~~~~~~~~ 89 (104)
+++|+.+.||+|.+++-+|..+|++|+.++++..... ..+ ...+..++|++ ..+|..+.....+..+..+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~----~~~-~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEA----TPI-RMIGQKQVPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchh----hHH-HhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence 4689999999999999999999999999988643321 112 23455799999 4688888988887777654
No 110
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.45 E-value=1.3e-06 Score=53.67 Aligned_cols=30 Identities=27% Similarity=0.635 Sum_probs=22.6
Q ss_pred HHHHHHhcCC-C--EEEEEcCCChhHHHHHHHH
Q 034075 4 ERVAKMASER-P--VVIFSKSSCCICHSIKTLF 33 (104)
Q Consensus 4 ~~~~~~~~~~-~--v~vf~~~~Cp~C~~~~~~L 33 (104)
+.++++.+.+ + ++.|+++|||+|++..+.+
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHh
Confidence 3456666666 4 5779999999999988655
No 111
>PRK10996 thioredoxin 2; Provisional
Probab=98.45 E-value=5.3e-06 Score=52.23 Aligned_cols=70 Identities=20% Similarity=0.361 Sum_probs=44.9
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhc----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCE
Q 034075 4 ERVAKMASERP--VVIFSKSSCCICHSIKTLFCDF----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGE 75 (104)
Q Consensus 4 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~ 75 (104)
+.+++.++..+ ++.|+++|||.|+.+...|.+. +-.+..+.+|.+.. . .+.+..+..++|++ |-+|+
T Consensus 43 ~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~-~----~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 43 ETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAE-R----ELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred HHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCC-H----HHHHhcCCCccCEEEEEECCE
Confidence 45666666554 6779999999999988888543 33455555554332 1 23333455889977 45887
Q ss_pred EEe
Q 034075 76 LVG 78 (104)
Q Consensus 76 ~ig 78 (104)
.+.
T Consensus 118 ~v~ 120 (139)
T PRK10996 118 VVD 120 (139)
T ss_pred EEE
Confidence 653
No 112
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.44 E-value=1.1e-06 Score=57.58 Aligned_cols=80 Identities=18% Similarity=0.195 Sum_probs=47.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC---CcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCEEEe---ccHHH-Hh
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGV---NPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGELVG---GANQV-MS 85 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v---~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~ig---g~~~~-~~ 85 (104)
|+-|+++|||.|+.+.+.|.++.- ....+.|+.+.. + +....+..++|++ |.+|+.++ |+++. -.
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~----l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~ 160 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--G----ASDEFDTDALPALLVYKGGELIGNFVRVTEDLGE 160 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--h----hHHhCCCCCCCEEEEEECCEEEEEEechHHhcCC
Confidence 455888999999999888855432 234444543321 2 3333455889977 66998764 44432 12
Q ss_pred HHHcCCcHHHHhhcC
Q 034075 86 LHLNRSLIPMLKRVG 100 (104)
Q Consensus 86 ~~~~g~L~~~L~~~g 100 (104)
-.....|+.+|...|
T Consensus 161 ~f~~~~le~~L~~~g 175 (175)
T cd02987 161 DFDAEDLESFLVEYG 175 (175)
T ss_pred CCCHHHHHHHHHhcC
Confidence 223345666666554
No 113
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=98.44 E-value=2.6e-06 Score=47.95 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=53.3
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC-CEEEeccHHHHhHH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG-GELVGGANQVMSLH 87 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~-g~~igg~~~~~~~~ 87 (104)
++|+.+.||+|.+++-+|...|++|+.+.++...+.. .+.+...+...++|++..+ |..+.....+.++.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~--~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENK--TPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccC--CHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHH
Confidence 4788999999999999999999999999888643211 1234555667999999984 77777666666554
No 114
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.44 E-value=6.8e-06 Score=47.89 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=41.4
Q ss_pred HHHHHHhcCC---CEEEEEcCCChhHHHHHHHHHhc----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE--CC
Q 034075 4 ERVAKMASER---PVVIFSKSSCCICHSIKTLFCDF----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI--GG 74 (104)
Q Consensus 4 ~~~~~~~~~~---~v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi--~g 74 (104)
+.+.+.+..+ -++.|+++||++|+.+...|++. +-....+.+|.+... .+.+..+..++|++++ +|
T Consensus 4 ~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 4 ANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-----DIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred HHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-----HHHHHcCCCcCCEEEEEeCC
Confidence 3444544432 26678899999999998888543 323444444433321 2223345589998755 77
Q ss_pred EEEe
Q 034075 75 ELVG 78 (104)
Q Consensus 75 ~~ig 78 (104)
+.+.
T Consensus 79 ~~~~ 82 (101)
T TIGR01068 79 KEVD 82 (101)
T ss_pred cEee
Confidence 6543
No 115
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.43 E-value=1.3e-06 Score=55.98 Aligned_cols=74 Identities=15% Similarity=0.321 Sum_probs=41.8
Q ss_pred HHHHHHhcCC--C--EEEEEcCCChhHHHHHHHHHhcC-------CCcEEEEeecCCCchhHHHHHHhcC--CCCCccEE
Q 034075 4 ERVAKMASER--P--VVIFSKSSCCICHSIKTLFCDFG-------VNPAVYELDEMPGGRELEQDLQRLG--CSPAVPAV 70 (104)
Q Consensus 4 ~~~~~~~~~~--~--v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~~~vd~~~~~~~~~~~l~~~~--~~~tvP~i 70 (104)
+.+++.+..+ + ++.|+++|||.|+.+.+.+.+.. +.+-.+|++..++ +.+.+.-.+ +..++|++
T Consensus 36 ~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~---la~~~~V~~~~~v~~~PT~ 112 (152)
T cd02962 36 KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN---VAEKFRVSTSPLSKQLPTI 112 (152)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH---HHHHcCceecCCcCCCCEE
Confidence 3455555322 2 78899999999999998885432 3334455544332 222221111 11237876
Q ss_pred --EECCEEEecc
Q 034075 71 --FIGGELVGGA 80 (104)
Q Consensus 71 --fi~g~~igg~ 80 (104)
|.+|+.++..
T Consensus 113 ilf~~Gk~v~r~ 124 (152)
T cd02962 113 ILFQGGKEVARR 124 (152)
T ss_pred EEEECCEEEEEE
Confidence 6799877443
No 116
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.42 E-value=8.8e-07 Score=53.98 Aligned_cols=47 Identities=23% Similarity=0.484 Sum_probs=37.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCC-CchhHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMP-GGRELEQDLQRL 61 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~-~~~~~~~~l~~~ 61 (104)
|++|+.+.|+-|++++++|++.+++|+++|+-..+ ...++.+.++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~ 48 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKL 48 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHc
Confidence 57999999999999999999999999999985543 444555555443
No 117
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.42 E-value=1e-06 Score=46.17 Aligned_cols=57 Identities=23% Similarity=0.460 Sum_probs=39.7
Q ss_pred EEEEEcCCChhHHHHHHHHH-----hcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE
Q 034075 15 VVIFSKSSCCICHSIKTLFC-----DFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~-----~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
+++|+.++||+|.++...+. ..++.+..++++...... .... ..+..++|++++.+.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~P~~~~~~~ 62 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALE---KELK-RYGVGGVPTLVVFGP 62 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHh---hHHH-hCCCccccEEEEEeC
Confidence 46899999999999999998 445666677766544321 1112 244589999987653
No 118
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.41 E-value=1.6e-06 Score=51.73 Aligned_cols=64 Identities=19% Similarity=0.260 Sum_probs=37.7
Q ss_pred HHHHHHhcC-CC--EEEEEcCCChhHHHHHHHHHhc----C--CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 4 ERVAKMASE-RP--VVIFSKSSCCICHSIKTLFCDF----G--VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 4 ~~~~~~~~~-~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
+.+++.+.. .+ ++.|+++||++|+++.+.+.+. + +.+-.+|++.++. . .+....+..++|++++
T Consensus 8 ~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~-~----~~~~~~~i~~~Pt~~~ 80 (109)
T cd03002 8 KNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN-K----PLCGKYGVQGFPTLKV 80 (109)
T ss_pred hhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc-H----HHHHHcCCCcCCEEEE
Confidence 345555433 33 6789999999999998887554 2 2233344443212 1 2333344588998853
No 119
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.41 E-value=1.2e-06 Score=52.52 Aligned_cols=69 Identities=16% Similarity=0.207 Sum_probs=37.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc-------CCCcEEEEeecCCCc---------------hhHHHHHHhcCCCCCccEEE
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDF-------GVNPAVYELDEMPGG---------------RELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~~~vd~~~~~---------------~~~~~~l~~~~~~~tvP~if 71 (104)
.+++|+.+|||+|+++.+.+... .-.+..+-++..... ....+.+.+..+...+|+++
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gtPt~~ 87 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGTPTIV 87 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SSSEEE
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCccCEEE
Confidence 47889999999999998777531 113444444432221 01123455555678999986
Q ss_pred E-C--CE---EEeccHH
Q 034075 72 I-G--GE---LVGGANQ 82 (104)
Q Consensus 72 i-~--g~---~igg~~~ 82 (104)
+ + |+ .+.|+-.
T Consensus 88 ~~d~~G~~v~~~~G~~~ 104 (112)
T PF13098_consen 88 FLDKDGKIVYRIPGYLS 104 (112)
T ss_dssp ECTTTSCEEEEEESS--
T ss_pred EEcCCCCEEEEecCCCC
Confidence 5 4 66 4556643
No 120
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.40 E-value=2.7e-06 Score=49.70 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=38.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE--ECCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFG----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF--IGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if--i~g~~i 77 (104)
++.|+++||+.|+++.+.+.+.. -.+....+|.+.. ..+.+..+..++|+++ -+|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~-----~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQ-----PQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCC-----HHHHHHcCCCCCCEEEEEeCCEEe
Confidence 67799999999999998886542 2344455554433 1244444558899884 577654
No 121
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.40 E-value=5.3e-06 Score=50.22 Aligned_cols=56 Identities=23% Similarity=0.415 Sum_probs=36.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-------CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE--ECCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF-------GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF--IGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if--i~g~~i 77 (104)
++.|+++|||.|+.+.+.+.+. ++.+-.+|++..+ .+....+..++|+++ .+|+.+
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~-------~l~~~~~V~~~Pt~~i~~~g~~~ 92 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER-------RLARKLGAHSVPAIVGIINGQVT 92 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH-------HHHHHcCCccCCEEEEEECCEEE
Confidence 6779999999999888777433 3444444544322 233334558899774 688765
No 122
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=6.6e-07 Score=52.97 Aligned_cols=85 Identities=13% Similarity=0.196 Sum_probs=63.5
Q ss_pred CEEEEEcCCChhH------HHHHHHHHhcCCCcEEEEeecCCCchh-----HHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 14 PVVIFSKSSCCIC------HSIKTLFCDFGVNPAVYELDEMPGGRE-----LEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 14 ~v~vf~~~~Cp~C------~~~~~~L~~~~v~~~~~~vd~~~~~~~-----~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
.|.+|+++.-+.- ..+..+|+...+.++.+|+....+.+. ++...+...|.+..|+||-++++.|+++.
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~ 82 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL 82 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence 4667777554433 256677888899999999876554333 22223334677899999999999999999
Q ss_pred HHhHHHcCCcHHHHhh
Q 034075 83 VMSLHLNRSLIPMLKR 98 (104)
Q Consensus 83 ~~~~~~~g~L~~~L~~ 98 (104)
+.+..+++.|++.|+-
T Consensus 83 F~ea~E~ntl~eFL~l 98 (108)
T KOG4023|consen 83 FFEAVEQNTLQEFLGL 98 (108)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999999863
No 123
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.37 E-value=1.6e-06 Score=53.44 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=37.4
Q ss_pred EEEEEc-------CCChhHHHHHHHHHhc----C--CCcEEEEeecCCCchhHHHHHHhcCCCC-CccEEEE--CCEEEe
Q 034075 15 VVIFSK-------SSCCICHSIKTLFCDF----G--VNPAVYELDEMPGGRELEQDLQRLGCSP-AVPAVFI--GGELVG 78 (104)
Q Consensus 15 v~vf~~-------~~Cp~C~~~~~~L~~~----~--v~~~~~~vd~~~~~~~~~~~l~~~~~~~-tvP~ifi--~g~~ig 78 (104)
++.|++ +|||.|+.+...|++. . +.+-.+|++..+...+....++...+.. ++|++++ +|+.+-
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~ 104 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLV 104 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceec
Confidence 567888 8999999888877443 3 4455566654332111112343434445 8998843 444444
Q ss_pred c
Q 034075 79 G 79 (104)
Q Consensus 79 g 79 (104)
|
T Consensus 105 ~ 105 (119)
T cd02952 105 E 105 (119)
T ss_pred c
Confidence 3
No 124
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.37 E-value=2.6e-06 Score=52.08 Aligned_cols=56 Identities=14% Similarity=0.368 Sum_probs=37.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC------CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFG------VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~i 77 (104)
|+-|+.+|||.|+.+.+.|.+.. +.+-.+|+|..++ +++..+....|+. |-||+++
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~d-------va~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPV-------YTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHH-------HHHhcCceeCcEEEEEECCcEE
Confidence 44599999999999999997764 3344456664443 4444444556654 6788886
No 125
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.36 E-value=1.7e-06 Score=52.86 Aligned_cols=62 Identities=5% Similarity=0.033 Sum_probs=37.3
Q ss_pred hcCCC--EEEEEcCCChhHHHHHHHHHhcCCC----cEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCE
Q 034075 10 ASERP--VVIFSKSSCCICHSIKTLFCDFGVN----PAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGE 75 (104)
Q Consensus 10 ~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~v~----~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~ 75 (104)
+++++ ++.|+.+||++|+.+.+.+++..-. .....||-+.+. ....+..+..++|++ |.+|+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~----~l~~~~~~I~~~PTl~lf~~g~ 95 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ----GKCRKQKHFFYFPVIHLYYRSR 95 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh----HHHHHhcCCcccCEEEEEECCc
Confidence 44554 6789999999999999998765322 233344432221 122223345778876 66776
No 126
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.34 E-value=5e-06 Score=50.71 Aligned_cols=71 Identities=13% Similarity=0.073 Sum_probs=45.1
Q ss_pred HHHHHhcC-C-CEEEEEcCC--ChhHHHHHHHHHhcCCC----cEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECC
Q 034075 5 RVAKMASE-R-PVVIFSKSS--CCICHSIKTLFCDFGVN----PAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGG 74 (104)
Q Consensus 5 ~~~~~~~~-~-~v~vf~~~~--Cp~C~~~~~~L~~~~v~----~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g 74 (104)
.+++.++. . .|+.|+.+| ||.|+.+.++|.+..-+ ..++.++.+.+ ..++...+..++|++ |-||
T Consensus 19 ~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-----~~la~~f~V~sIPTli~fkdG 93 (111)
T cd02965 19 TLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-----QALAARFGVLRTPALLFFRDG 93 (111)
T ss_pred cHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-----HHHHHHcCCCcCCEEEEEECC
Confidence 34444433 2 367788886 99999999999665433 23334443333 135555566889987 6699
Q ss_pred EEEecc
Q 034075 75 ELVGGA 80 (104)
Q Consensus 75 ~~igg~ 80 (104)
+.++..
T Consensus 94 k~v~~~ 99 (111)
T cd02965 94 RYVGVL 99 (111)
T ss_pred EEEEEE
Confidence 887654
No 127
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.33 E-value=3.8e-06 Score=53.13 Aligned_cols=67 Identities=18% Similarity=0.303 Sum_probs=40.6
Q ss_pred HHHHhcCCC--EEEEEcCCChhHHHHHHHHHhc----C--CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE-E--CC
Q 034075 6 VAKMASERP--VVIFSKSSCCICHSIKTLFCDF----G--VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF-I--GG 74 (104)
Q Consensus 6 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if-i--~g 74 (104)
+++.+...+ ++.|+.+||++|+.....|.+. + +.+..+++|... ..+...+ .+...+|+++ + +|
T Consensus 13 ~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~----~~~~~~~-~~V~~iPt~v~~~~~G 87 (142)
T cd02950 13 PEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK----WLPEIDR-YRVDGIPHFVFLDREG 87 (142)
T ss_pred HHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc----cHHHHHH-cCCCCCCEEEEECCCC
Confidence 344454544 5679999999999999888543 2 344455555322 1122333 4458899874 4 46
Q ss_pred EEE
Q 034075 75 ELV 77 (104)
Q Consensus 75 ~~i 77 (104)
+.+
T Consensus 88 ~~v 90 (142)
T cd02950 88 NEE 90 (142)
T ss_pred CEE
Confidence 654
No 128
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.33 E-value=8e-06 Score=48.43 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=38.7
Q ss_pred HHHHHHhcC-CC--EEEEEcCCChhHHHHHHHHHhcCC----CcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECC
Q 034075 4 ERVAKMASE-RP--VVIFSKSSCCICHSIKTLFCDFGV----NPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGG 74 (104)
Q Consensus 4 ~~~~~~~~~-~~--v~vf~~~~Cp~C~~~~~~L~~~~v----~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g 74 (104)
+.+++.+.. .+ ++.|+++||+.|+++.+.+++..- ......+|-+.. ..+.+..+..++|++ |.+|
T Consensus 9 ~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~i~~~Pt~~~~~~g 83 (104)
T cd03004 9 EDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-----ESLCQQANIRAYPTIRLYPGN 83 (104)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-----HHHHHHcCCCcccEEEEEcCC
Confidence 345555433 32 677999999999999888855422 233334443222 123333456889987 4465
No 129
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.33 E-value=6.5e-06 Score=49.55 Aligned_cols=66 Identities=14% Similarity=0.266 Sum_probs=38.8
Q ss_pred HHHHHHHhc---C--CCEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE
Q 034075 3 MERVAKMAS---E--RPVVIFSKSSCCICHSIKTLFCDFG-----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 3 ~~~~~~~~~---~--~~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if 71 (104)
.+.+++++. + .-++.|+++|||+|+++.+.+.+.. -.+.+..++.+.+... ...+..+...+|+++
T Consensus 8 ~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~---~~~~~~~v~~~Pti~ 83 (109)
T cd02993 8 RAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE---FAKEELQLKSFPTIL 83 (109)
T ss_pred HHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh---hHHhhcCCCcCCEEE
Confidence 345555552 2 2367899999999999999885532 2244444443332121 222334568899874
No 130
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.33 E-value=3.6e-06 Score=57.35 Aligned_cols=68 Identities=19% Similarity=0.383 Sum_probs=43.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc---CCCcEEEEeec---CCCch--------------------------------h--
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDF---GVNPAVYELDE---MPGGR--------------------------------E-- 53 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~---~v~~~~~~vd~---~~~~~--------------------------------~-- 53 (104)
.|++|+.+.||||+++.+.+.++ ++.+.++.... ++... .
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v~ 189 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDIA 189 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchHH
Confidence 48899999999999999999775 35544433321 11100 0
Q ss_pred HHHHHHhcCCCCCccEEEE-CCEEEeccH
Q 034075 54 LEQDLQRLGCSPAVPAVFI-GGELVGGAN 81 (104)
Q Consensus 54 ~~~~l~~~~~~~tvP~ifi-~g~~igg~~ 81 (104)
-...+.+..|...+|++++ ||+.+.|+-
T Consensus 190 ~~~~la~~lgi~gTPtiv~~~G~~~~G~~ 218 (232)
T PRK10877 190 DHYALGVQFGVQGTPAIVLSNGTLVPGYQ 218 (232)
T ss_pred HhHHHHHHcCCccccEEEEcCCeEeeCCC
Confidence 0111222345688999988 999999974
No 131
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=98.32 E-value=1e-05 Score=45.21 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=53.4
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSL 86 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~ 86 (104)
.+|+.+.+|+|.+++-.|.+.|++|+.++++..... ...+.+.+.+...++|++..+|..+.....+..+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGG-LDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecccccc-ccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHH
Confidence 689999999999999999999999999888643221 1112344556678999999999888777666554
No 132
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.31 E-value=2.7e-06 Score=50.67 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=33.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCC---cEEEEeecCCCchhHHHHHHhcCCCCCccEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVN---PAVYELDEMPGGRELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if 71 (104)
++.|+++|||+|+...+.|++..-. ...+.+|.+.... .+.+..+..++|+++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEE
Confidence 6779999999999999998655321 3344555431222 233444568899874
No 133
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.31 E-value=1.1e-05 Score=46.70 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=40.7
Q ss_pred HHHHHHhcCC--CEEEEEcCCChhHHHHHHHHHhc------CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 4 ERVAKMASER--PVVIFSKSSCCICHSIKTLFCDF------GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 4 ~~~~~~~~~~--~v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
+.+.+.+.+. -+++|+++||++|+++.+.+.+. +-.+....++.+.. ..+.+..+...+|++++
T Consensus 6 ~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02961 6 DNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-----NDLCSEYGVRGYPTIKL 77 (101)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-----HHHHHhCCCCCCCEEEE
Confidence 3556666555 37789999999999999888543 23344555543331 23444445689998843
No 134
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.30 E-value=5.8e-06 Score=49.24 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=36.5
Q ss_pred HHHHHHhcCCC-EEEEEcCCChhHHHHHHHHHhc-------CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE
Q 034075 4 ERVAKMASERP-VVIFSKSSCCICHSIKTLFCDF-------GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 4 ~~~~~~~~~~~-v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if 71 (104)
+.+.+..+... ++.|+++|||+|++..+.|++. +..+....+|.... . .+.+..+..++|+++
T Consensus 7 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~----~~~~~~~I~~~Pt~~ 77 (104)
T cd03000 7 DSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-S----SIASEFGVRGYPTIK 77 (104)
T ss_pred hhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-H----hHHhhcCCccccEEE
Confidence 34445444333 5679999999999888887543 22233333433221 1 233334568899883
No 135
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.28 E-value=1.8e-05 Score=49.09 Aligned_cols=76 Identities=18% Similarity=0.255 Sum_probs=45.6
Q ss_pred HHHHHHhcCCC-E-EEEEcCCChhHHHHHH-HHHh------cCCCcEEEEeecCCCchhHHH----HHHhcCCCCCccEE
Q 034075 4 ERVAKMASERP-V-VIFSKSSCCICHSIKT-LFCD------FGVNPAVYELDEMPGGRELEQ----DLQRLGCSPAVPAV 70 (104)
Q Consensus 4 ~~~~~~~~~~~-v-~vf~~~~Cp~C~~~~~-~L~~------~~v~~~~~~vd~~~~~~~~~~----~l~~~~~~~tvP~i 70 (104)
+.++++.++++ | +.|+++||++|+.+.+ .+.+ .+-.|..+.+|.+.. .++.+ .+....+...+|++
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~~G~Pt~ 84 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQGGWPLN 84 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCCCCCCEE
Confidence 44566666666 3 4588899999999965 3432 244577666665432 22322 22223456789988
Q ss_pred EE---CCEEEecc
Q 034075 71 FI---GGELVGGA 80 (104)
Q Consensus 71 fi---~g~~igg~ 80 (104)
.+ +|+.+.+.
T Consensus 85 vfl~~~G~~~~~~ 97 (124)
T cd02955 85 VFLTPDLKPFFGG 97 (124)
T ss_pred EEECCCCCEEeee
Confidence 54 67777443
No 136
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.27 E-value=8.7e-06 Score=47.83 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=41.5
Q ss_pred HHHHHHhcCCC-EEEEEcCCChhHHHHHHHHHhc----CC---CcEEEEeecCCCchhHHHHHHhcCCCCCccEEE--EC
Q 034075 4 ERVAKMASERP-VVIFSKSSCCICHSIKTLFCDF----GV---NPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF--IG 73 (104)
Q Consensus 4 ~~~~~~~~~~~-v~vf~~~~Cp~C~~~~~~L~~~----~v---~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if--i~ 73 (104)
+.+++.+..++ ++.|+++||+.|+...+.+++. +- .+....+|-+... .+.+..+..++|+++ -+
T Consensus 8 ~~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~~Pt~~~~~~ 82 (102)
T cd03005 8 DNFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----ELCSEFQVRGYPTLLLFKD 82 (102)
T ss_pred HHHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----hhHhhcCCCcCCEEEEEeC
Confidence 45566665555 5679999999999988877443 21 3445555533321 222333458899864 46
Q ss_pred CEEE
Q 034075 74 GELV 77 (104)
Q Consensus 74 g~~i 77 (104)
|+.+
T Consensus 83 g~~~ 86 (102)
T cd03005 83 GEKV 86 (102)
T ss_pred CCee
Confidence 6543
No 137
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=2.2e-06 Score=51.88 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=37.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCc-----EEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNP-----AVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~-----~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~i 77 (104)
|+-|+++||+.|+.+.+.+.++..+| -.+|+|. .. + +.+..+..++|++ +.+|+-+
T Consensus 25 VvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde---~~---~-~~~~~~V~~~PTf~f~k~g~~~ 87 (106)
T KOG0907|consen 25 VVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE---LE---E-VAKEFNVKAMPTFVFYKGGEEV 87 (106)
T ss_pred EEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc---CH---h-HHHhcCceEeeEEEEEECCEEE
Confidence 44589999999999999998775554 3455554 22 2 3333445888887 4577643
No 138
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=98.25 E-value=1.4e-05 Score=44.94 Aligned_cols=71 Identities=11% Similarity=0.202 Sum_probs=51.9
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC-CEEEeccHHHHhHHH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG-GELVGGANQVMSLHL 88 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~-g~~igg~~~~~~~~~ 88 (104)
.+|+.+.| .|.+++-+|.+.|++|+.++++.... ....+.+...+....+|++..+ |..+.....+..+..
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~-~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTK-TQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccC-ccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence 57888776 48899999999999999988875432 1111344556677899999887 777887777766643
No 139
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.24 E-value=5.3e-06 Score=51.24 Aligned_cols=69 Identities=6% Similarity=0.055 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCC--E-EEEEcCCChh--HH--HHH--------HHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCc
Q 034075 3 MERVAKMASERP--V-VIFSKSSCCI--CH--SIK--------TLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAV 67 (104)
Q Consensus 3 ~~~~~~~~~~~~--v-~vf~~~~Cp~--C~--~~~--------~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tv 67 (104)
.+++++.+..++ + +.|+.+||+. |+ ... .+|+..++.+-.+|+|.+++ +++..+..++
T Consensus 16 ~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~-------La~~~~I~~i 88 (120)
T cd03065 16 EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK-------VAKKLGLDEE 88 (120)
T ss_pred hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH-------HHHHcCCccc
Confidence 356677666664 4 4456667754 98 333 23334456666667665432 4445566889
Q ss_pred cEE--EECCEEEe
Q 034075 68 PAV--FIGGELVG 78 (104)
Q Consensus 68 P~i--fi~g~~ig 78 (104)
|++ |.||+.+.
T Consensus 89 PTl~lfk~G~~v~ 101 (120)
T cd03065 89 DSIYVFKDDEVIE 101 (120)
T ss_pred cEEEEEECCEEEE
Confidence 987 77998664
No 140
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.24 E-value=1.2e-05 Score=47.06 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=38.6
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhcC----C--CcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 4 ERVAKMASERP--VVIFSKSSCCICHSIKTLFCDFG----V--NPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 4 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~~----v--~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
+.+++.+...+ ++.|+++||+.|+++.+.+.+.. - .+....+|.+.. ..+.+..+...+|++++
T Consensus 4 ~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~i~~~P~~~~ 75 (102)
T TIGR01126 4 SNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-----KDLASRFGVSGFPTIKF 75 (102)
T ss_pred hhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-----HHHHHhCCCCcCCEEEE
Confidence 34555555444 78899999999999887775432 1 234444443222 12333345689998843
No 141
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.3e-05 Score=54.56 Aligned_cols=73 Identities=11% Similarity=0.005 Sum_probs=59.4
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
..|.+|+.-.|||.++++-.|+.+||+|+++++|-...... .++....+..+|++..||+.|.-.-.+.++.+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~---ll~~np~hkKVPvL~Hn~k~i~ESliiveYiD 80 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEW---LLEKNPVHKKVPVLEHNGKPICESLIIVEYID 80 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHH---HHHhccccccCCEEEECCceehhhHHHHHHHH
Confidence 56999999999999999999999999999999986543322 34444478899999999999887766666654
No 142
>PRK15113 glutathione S-transferase; Provisional
Probab=98.22 E-value=1.7e-05 Score=52.91 Aligned_cols=75 Identities=12% Similarity=0.106 Sum_probs=56.3
Q ss_pred CCEEEEEcC--CChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 13 RPVVIFSKS--SCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 13 ~~v~vf~~~--~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
..+++|+.+ .||+|+++.-+|.+.|++|+.+.++.... ....+.+.+.+....||++..+|..+-....+..+..
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~-~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAG-EHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCc-cccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 347899975 69999999999999999999998875322 1111344556667899999999988877776665543
No 143
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=98.21 E-value=2.5e-05 Score=53.47 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=52.9
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHc
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLN 89 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~ 89 (104)
..||+|++++-.|..+|++|+.+.+|...... .+.+.+...++|++..+|..+.....+.++..+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~----~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e 81 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKPE----DLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEE 81 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCCH----HHHHHCcCCCCCEEEECCEEeecHHHHHHHHHH
Confidence 57999999999999999999999998654322 344556668999999999999998888777663
No 144
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.20 E-value=1.6e-05 Score=46.82 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHhcCCC--EEEEEcCCChhHHHHHHHHHhc----C--CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECC
Q 034075 5 RVAKMASERP--VVIFSKSSCCICHSIKTLFCDF----G--VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGG 74 (104)
Q Consensus 5 ~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g 74 (104)
.+++.++.++ ++.|+++|||+|+++.+.+.+. . -.+....+|.+.+.. ..+....+..++|++ |-+|
T Consensus 9 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~~~i~~~Pt~~~~~~g 85 (104)
T cd02997 9 DFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH---DALKEEYNVKGFPTFKYFENG 85 (104)
T ss_pred hHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc---HHHHHhCCCccccEEEEEeCC
Confidence 4555555544 6789999999999998776433 1 223344444332111 123333345788977 4566
Q ss_pred EEE
Q 034075 75 ELV 77 (104)
Q Consensus 75 ~~i 77 (104)
+.+
T Consensus 86 ~~~ 88 (104)
T cd02997 86 KFV 88 (104)
T ss_pred Cee
Confidence 644
No 145
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.19 E-value=2.6e-05 Score=45.82 Aligned_cols=63 Identities=14% Similarity=0.120 Sum_probs=37.2
Q ss_pred HHHHHHh-cCCC--EEEEEcCCChhHHHHHHHHHhc----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE
Q 034075 4 ERVAKMA-SERP--VVIFSKSSCCICHSIKTLFCDF----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 4 ~~~~~~~-~~~~--v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if 71 (104)
+.+++.+ ...+ ++.|+++||++|+++.+.+.+. .-.+.+..+|.+.. . .+.+..+..++|+++
T Consensus 8 ~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-~----~~~~~~~i~~~P~~~ 77 (103)
T cd03001 8 SNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-Q----SLAQQYGVRGFPTIK 77 (103)
T ss_pred HhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-H----HHHHHCCCCccCEEE
Confidence 3455544 3333 6788999999999998888553 22244444443322 1 232333458899774
No 146
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.16 E-value=1.8e-05 Score=46.48 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=34.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhc----C--CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF----G--VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~----~--v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
++.|+++|||+|+++.+.+.+. . -.+....+|.+.+.. .+.+..+..++|++++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANK----DLAKKYGVSGFPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcch----hhHHhCCCCCcCEEEE
Confidence 6789999999999988887543 2 235555665444111 2333334588998854
No 147
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.16 E-value=5.2e-06 Score=55.14 Aligned_cols=90 Identities=14% Similarity=0.200 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCC----EEEEEcCCChhHHHHHHHHHhcCCC---cEEEEeecCCCchhHHHHHHhcCCCCCccEE--EEC
Q 034075 3 MERVAKMASERP----VVIFSKSSCCICHSIKTLFCDFGVN---PAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIG 73 (104)
Q Consensus 3 ~~~~~~~~~~~~----v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~ 73 (104)
.++.+++....+ |+-|+.+||+.|+.+.+.|.++.-+ ..++.++.+. ... ..+...+|++ |.|
T Consensus 90 ~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~-------~~~-~~~i~~lPTlliyk~ 161 (192)
T cd02988 90 PDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ-------CIP-NYPDKNLPTILVYRN 161 (192)
T ss_pred HHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH-------hHh-hCCCCCCCEEEEEEC
Confidence 344555554432 4558999999999999998665422 3344444321 122 2345788977 568
Q ss_pred CEEEe---ccHHHH-hHHHcCCcHHHHhhcC
Q 034075 74 GELVG---GANQVM-SLHLNRSLIPMLKRVG 100 (104)
Q Consensus 74 g~~ig---g~~~~~-~~~~~g~L~~~L~~~g 100 (104)
|+.++ |+.++- .-....+|+.+|...|
T Consensus 162 G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 162 GDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred CEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence 87553 333321 0122335666666554
No 148
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=98.14 E-value=3.3e-05 Score=43.15 Aligned_cols=71 Identities=13% Similarity=0.183 Sum_probs=52.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
.+|+.+. +.|.+++-+|...|++|+.+.++...... ....+.+.+...++|++..+|..+.....+..+..
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQ-APPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCcc-CCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5677765 67999999999999999998887532111 11234455667899999999999988887777654
No 149
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.12 E-value=5.7e-05 Score=42.32 Aligned_cols=64 Identities=11% Similarity=0.029 Sum_probs=49.7
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhH
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSL 86 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~ 86 (104)
..||+|.+++-+|...|++|+.+.++..... ..+.+.+.+....+|++..+|..+.....+..+
T Consensus 8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~--~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPD--TRARILEFSPTGKVPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCHHHHHHHHHHHHcCCCCEEEEeCCCCcc--ccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence 5799999999999999999999888754321 113455566679999999999888877766654
No 150
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.12 E-value=4.5e-06 Score=52.98 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=39.2
Q ss_pred HHHHHHHhc--CCC--EEEEEcCCChhHHHHHHHHHhcCC------CcEEEEeecCCCchhHHHHHHhcCCCC-CccEE-
Q 034075 3 MERVAKMAS--ERP--VVIFSKSSCCICHSIKTLFCDFGV------NPAVYELDEMPGGRELEQDLQRLGCSP-AVPAV- 70 (104)
Q Consensus 3 ~~~~~~~~~--~~~--v~vf~~~~Cp~C~~~~~~L~~~~v------~~~~~~vd~~~~~~~~~~~l~~~~~~~-tvP~i- 70 (104)
.+.+++.+. ..+ |+-|+++|||.|+.+.+.|.+..- .+-.+|+|..++ ++...+.. ..|++
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~d-------la~~y~I~~~~t~~~ 83 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPD-------FNTMYELYDPCTVMF 83 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHH-------HHHHcCccCCCcEEE
Confidence 345555553 233 456999999999999999976642 233455554443 33333334 44555
Q ss_pred -EECCE
Q 034075 71 -FIGGE 75 (104)
Q Consensus 71 -fi~g~ 75 (104)
|-+|+
T Consensus 84 ffk~g~ 89 (142)
T PLN00410 84 FFRNKH 89 (142)
T ss_pred EEECCe
Confidence 34666
No 151
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.11 E-value=1.5e-05 Score=55.55 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=41.9
Q ss_pred HHHHHhcCCCEEEEEcCCChhHHHHHHHHH----hcCCCcEEEEeecCCCc-----hhHHHHHHhcCCCCCccEEEE
Q 034075 5 RVAKMASERPVVIFSKSSCCICHSIKTLFC----DFGVNPAVYELDEMPGG-----RELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 5 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~----~~~v~~~~~~vd~~~~~-----~~~~~~l~~~~~~~tvP~ifi 72 (104)
.++++.....++.|+++|||+|+.....|+ ++++.+..+++|..... ..-. .+....+..++|++|+
T Consensus 160 ~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~-~la~~~gV~~vPtl~L 235 (271)
T TIGR02740 160 VMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDA-GQAQQLKIRTVPAVFL 235 (271)
T ss_pred HHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCH-HHHHHcCCCcCCeEEE
Confidence 344444555578899999999999988884 45666666777653210 0001 1233345689999864
No 152
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.11 E-value=1.9e-05 Score=53.25 Aligned_cols=68 Identities=22% Similarity=0.429 Sum_probs=47.6
Q ss_pred HHHHHHhcCCCEEEEEcCCChhHHHHHHHH----HhcCCCcEEEEeecCC-----CchhHHHHHHhcCCCCCccEEEE
Q 034075 4 ERVAKMASERPVVIFSKSSCCICHSIKTLF----CDFGVNPAVYELDEMP-----GGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 4 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~~~vd~~~-----~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
+.++++.+...+++|+.++||+|+....+| +++|++...+.+|... +...-....+.. +..++|++|+
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l-~v~~~Pal~L 189 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRL-GVKVTPALFL 189 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHc-CCCcCCEEEE
Confidence 456677777789999999999999988888 5678888888887431 110001223333 4489999986
No 153
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.08 E-value=1.4e-06 Score=54.49 Aligned_cols=65 Identities=12% Similarity=0.289 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 4 ERVAKMASERPVVIFSKSSCCICHSIKTLFCDF-----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 4 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
+.++...+.-.+++++.+|||.|.+..+.|.+. ++++.++-.|.+++. +...+. .+..++|++++
T Consensus 34 ~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el--~~~~lt--~g~~~IP~~I~ 103 (129)
T PF14595_consen 34 EKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKEL--MDQYLT--NGGRSIPTFIF 103 (129)
T ss_dssp HHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHH--TTTTTT---SS--SSEEEE
T ss_pred HHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhH--HHHHHh--CCCeecCEEEE
Confidence 445555555579999999999999998888544 455555555543321 111222 45699999854
No 154
>PLN02473 glutathione S-transferase
Probab=98.06 E-value=4.5e-05 Score=50.69 Aligned_cols=73 Identities=14% Similarity=0.064 Sum_probs=55.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
+.+|+.+.+|+|.+++-+|.++|++|+.+.++.......-.+.+ ..+...++|++..+|..+.....+.++..
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~~nP~g~vP~L~~~g~~l~ES~aI~~YL~ 75 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHL-LRQPFGQVPAIEDGDLKLFESRAIARYYA 75 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHH-hhCCCCCCCeEEECCEEEEehHHHHHHHH
Confidence 57899999999999999999999999998876432111111233 34556899999999988888877776553
No 155
>PTZ00062 glutaredoxin; Provisional
Probab=98.05 E-value=2.1e-05 Score=52.77 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=45.2
Q ss_pred HHHHHHHHhcC--CC-EEEEEcCCChhHHHHHHHHHhcCC---CcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EEC
Q 034075 2 AMERVAKMASE--RP-VVIFSKSSCCICHSIKTLFCDFGV---NPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIG 73 (104)
Q Consensus 2 a~~~~~~~~~~--~~-v~vf~~~~Cp~C~~~~~~L~~~~v---~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~ 73 (104)
+.+.+.+.+++ .. |..|+++|||.|+.+...|.++.- .+..+.|+.+ .+...+|++ |-|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~vPtfv~~~~ 71 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNEYGVFEFYQN 71 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCcccceEEEEEEC
Confidence 35667777773 33 556668999999999999976643 3455566533 334778865 568
Q ss_pred CEEEeccH
Q 034075 74 GELVGGAN 81 (104)
Q Consensus 74 g~~igg~~ 81 (104)
|+.++.++
T Consensus 72 g~~i~r~~ 79 (204)
T PTZ00062 72 SQLINSLE 79 (204)
T ss_pred CEEEeeee
Confidence 88776543
No 156
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.01 E-value=4.4e-05 Score=46.46 Aligned_cols=66 Identities=17% Similarity=0.134 Sum_probs=37.5
Q ss_pred HHHHHHhcCCC---EEEEEcCCChhHHHHHHHHHhcCCC-------cEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 4 ERVAKMASERP---VVIFSKSSCCICHSIKTLFCDFGVN-------PAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 4 ~~~~~~~~~~~---v~vf~~~~Cp~C~~~~~~L~~~~v~-------~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
+.+++.+..+. ++.|+++|||.|+...+.+.+..-. +....+|-+.+. ..+ +.+..+...+|++++
T Consensus 9 ~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~-~~~~~~i~~~Pt~~l 84 (114)
T cd02992 9 ASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVA-LCRDFGVTGYPTLRY 84 (114)
T ss_pred HhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHH-HHHhCCCCCCCEEEE
Confidence 34555554442 5679999999999998887554221 333344422211 112 333334588998854
No 157
>PLN02378 glutathione S-transferase DHAR1
Probab=97.99 E-value=5.5e-05 Score=50.58 Aligned_cols=64 Identities=8% Similarity=0.082 Sum_probs=49.8
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
..||+|+++.-.|.+.|++|+.+.++...... .+...+...++|++..+|..+.....+..+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~----~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKPQ----WFLDISPQGKVPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCCH----HHHHhCCCCCCCEEEECCEEecCHHHHHHHHH
Confidence 46999999999999999999998887643322 24445666899999999988877776666554
No 158
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.98 E-value=5e-05 Score=50.23 Aligned_cols=32 Identities=22% Similarity=0.513 Sum_probs=24.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh--cCCCcEEEE
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCD--FGVNPAVYE 44 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~--~~v~~~~~~ 44 (104)
..|++|+.+.||||+++.+.+.+ .++.+.++.
T Consensus 79 ~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~ 112 (197)
T cd03020 79 RVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFP 112 (197)
T ss_pred EEEEEEECCCCccHHHHHHHHhhccCceEEEEEE
Confidence 35889999999999999999974 344444443
No 159
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=97.97 E-value=3.2e-05 Score=51.16 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=54.2
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 17 IFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
+|+.+.||+|++++-+|.+.|++|+.+.++.........+.+.+.+...++|++..+|..+.....+..+..
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~ 73 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLE 73 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHH
Confidence 688889999999999999999999998887421101111235556667899999999998888877766554
No 160
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.97 E-value=6.4e-05 Score=52.21 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=49.6
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
.+||+|++++-+|.++|++|+.+.++...... .+...+....+|++..+|..+.....+.++..
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~----~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~ 134 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPE----WFLKISPEGKVPVVKLDEKWVADSDVITQALE 134 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCH----HHHhhCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 46999999999999999999998887543322 23345566899999999988877777666553
No 161
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.97 E-value=3e-05 Score=44.35 Aligned_cols=61 Identities=18% Similarity=0.310 Sum_probs=38.6
Q ss_pred HHHHhcCCC--EEEEEcCCChhHHHHHHHHHh-------cCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 6 VAKMASERP--VVIFSKSSCCICHSIKTLFCD-------FGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 6 ~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
+.+..++++ ++.|+++||++|+.+.+.+-+ .+-.|..+.+|.+....+. .+.. ..+|++++
T Consensus 10 l~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~--~~~~----~~~P~~~~ 79 (82)
T PF13899_consen 10 LAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA--QFDR----QGYPTFFF 79 (82)
T ss_dssp HHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH--HHHH----CSSSEEEE
T ss_pred HHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH--HhCC----ccCCEEEE
Confidence 344444444 577899999999999888722 3456888888865443332 2222 33898864
No 162
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.96 E-value=8e-05 Score=50.62 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=37.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhc----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~i 77 (104)
++.|+++|||+|+++.+.+++. +-......+|.+.. ..+.+..+..++|++ |-+|+.+
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-----~~l~~~~~I~~~PTl~~f~~G~~v 119 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-----LNLAKRFAIKGYPTLLLFDKGKMY 119 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-----HHHHHHcCCCcCCEEEEEECCEEE
Confidence 6789999999999999988654 21233334443322 123333455888977 4588765
No 163
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.96 E-value=5.3e-05 Score=49.91 Aligned_cols=35 Identities=29% Similarity=0.638 Sum_probs=26.7
Q ss_pred CEEEEEcCCChhHHHHHHHH----HhcCCCcEEEEeecC
Q 034075 14 PVVIFSKSSCCICHSIKTLF----CDFGVNPAVYELDEM 48 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~~~vd~~ 48 (104)
++++|+.+|||+|++....| +++++.+.-+.+|..
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~ 110 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQ 110 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence 48899999999999885555 556777666777644
No 164
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.95 E-value=5e-05 Score=48.75 Aligned_cols=38 Identities=26% Similarity=0.606 Sum_probs=28.7
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHH----hcCCCcEEEEeecC
Q 034075 11 SERPVVIFSKSSCCICHSIKTLFC----DFGVNPAVYELDEM 48 (104)
Q Consensus 11 ~~~~v~vf~~~~Cp~C~~~~~~L~----~~~v~~~~~~vd~~ 48 (104)
....++.|+.+|||+|++..+.|. ++++.+..+++|..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 344589999999999999888885 44666666777643
No 165
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.93 E-value=8e-05 Score=43.67 Aligned_cols=62 Identities=11% Similarity=0.313 Sum_probs=35.9
Q ss_pred HHHHHhcCC---CEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 5 RVAKMASER---PVVIFSKSSCCICHSIKTLFCDFG------VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 5 ~~~~~~~~~---~v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
.+++.+... -++.|+++||++|+.+.+.+.+.. ..+....+|.+.. + ...... ..++|++++
T Consensus 9 ~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~---~~~~~~-~~~~Pt~~~ 79 (104)
T cd02995 9 NFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN--D---VPSEFV-VDGFPTILF 79 (104)
T ss_pred hhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch--h---hhhhcc-CCCCCEEEE
Confidence 445544332 267799999999999998885542 1244444443322 1 122223 378998753
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.92 E-value=2.1e-05 Score=47.63 Aligned_cols=45 Identities=20% Similarity=0.488 Sum_probs=31.5
Q ss_pred EEcCCChhHHHHHHHHHhcCCCcEEEEeecCC-CchhHHHHHHhcC
Q 034075 18 FSKSSCCICHSIKTLFCDFGVNPAVYELDEMP-GGRELEQDLQRLG 62 (104)
Q Consensus 18 f~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~-~~~~~~~~l~~~~ 62 (104)
|+.+.|.-|+++.++|++.|++|+++|+...+ +..++.+.++..+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 78899999999999999999999999996643 4444666555544
No 167
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=97.89 E-value=0.00014 Score=46.44 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=18.0
Q ss_pred EEEEEcCCChhHHHHHHHHHh
Q 034075 15 VVIFSKSSCCICHSIKTLFCD 35 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~ 35 (104)
++-|+++|||.|++..+.|.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 456899999999999998865
No 168
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.85 E-value=9.3e-05 Score=55.10 Aligned_cols=67 Identities=13% Similarity=0.276 Sum_probs=40.4
Q ss_pred HHHHHHhc---CCC--EEEEEcCCChhHHHHHHHHHhcC-------CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE-
Q 034075 4 ERVAKMAS---ERP--VVIFSKSSCCICHSIKTLFCDFG-------VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV- 70 (104)
Q Consensus 4 ~~~~~~~~---~~~--v~vf~~~~Cp~C~~~~~~L~~~~-------v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i- 70 (104)
+.+++.++ .++ ++.|+.+|||+|+.+.+.|++.. +.+-.+|+|.+.. + ......+..++|++
T Consensus 359 ~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~---~~~~~~~I~~~PTii 433 (463)
T TIGR00424 359 PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E---FAKQELQLGSFPTIL 433 (463)
T ss_pred HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H---HHHHHcCCCccceEE
Confidence 35566553 333 67799999999999999885542 3344456654322 1 22222344788877
Q ss_pred -EECCE
Q 034075 71 -FIGGE 75 (104)
Q Consensus 71 -fi~g~ 75 (104)
|.+|.
T Consensus 434 ~Fk~g~ 439 (463)
T TIGR00424 434 FFPKHS 439 (463)
T ss_pred EEECCC
Confidence 45663
No 169
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0001 Score=48.99 Aligned_cols=73 Identities=11% Similarity=0.164 Sum_probs=57.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE-EEeccHHHHhHHHcC
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE-LVGGANQVMSLHLNR 90 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~-~igg~~~~~~~~~~g 90 (104)
++|+.+.+|+|.++.-.+.++|++|+.+.++... ....+.+...+....||++..+|- .+-....+.++..+.
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~--~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~ 75 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA--EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAER 75 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCccc--ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhh
Confidence 5788888999999999999999999999998765 112234556677799999998876 677777777666543
No 170
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.77 E-value=0.00021 Score=52.16 Aligned_cols=69 Identities=19% Similarity=0.286 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHh-------cCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--E
Q 034075 3 MERVAKMASERP--VVIFSKSSCCICHSIKTLFCD-------FGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--F 71 (104)
Q Consensus 3 ~~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--f 71 (104)
.+.+++.++.++ ++.|+++||++|+++.+.+.+ .+-++....+|-+.. . .+.+..+..++|++ |
T Consensus 8 ~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~----~l~~~~~i~~~Pt~~~~ 82 (462)
T TIGR01130 8 KDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-K----DLAQKYGVSGYPTLKIF 82 (462)
T ss_pred HHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-H----HHHHhCCCccccEEEEE
Confidence 456677777776 577999999999998877643 232344555554332 1 23333455789987 4
Q ss_pred ECCEE
Q 034075 72 IGGEL 76 (104)
Q Consensus 72 i~g~~ 76 (104)
-+|+.
T Consensus 83 ~~g~~ 87 (462)
T TIGR01130 83 RNGED 87 (462)
T ss_pred eCCcc
Confidence 56664
No 171
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.75 E-value=0.00019 Score=49.76 Aligned_cols=68 Identities=13% Similarity=0.287 Sum_probs=48.2
Q ss_pred HHHHHHhcCCCEEEEEcCCChhHHHHHHHH----HhcCCCcEEEEeecCC--CchhH---HHHHHhcCCCCCccEEEE
Q 034075 4 ERVAKMASERPVVIFSKSSCCICHSIKTLF----CDFGVNPAVYELDEMP--GGREL---EQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 4 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~~~vd~~~--~~~~~---~~~l~~~~~~~tvP~ifi 72 (104)
+.++++.+...+++|..+.||+|++...+| +++|++...+.+|... ...+. .....+. +...+|++|+
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~Pal~L 219 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKYFPALYL 219 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCccCceEEE
Confidence 456677777889999999999999998888 6678888888888642 11110 1122233 4588999986
No 172
>PTZ00102 disulphide isomerase; Provisional
Probab=97.74 E-value=0.00024 Score=52.38 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=41.7
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHHHHh-------cCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EE
Q 034075 4 ERVAKMASERP--VVIFSKSSCCICHSIKTLFCD-------FGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FI 72 (104)
Q Consensus 4 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L~~-------~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi 72 (104)
+.+++.+..++ ++.|+++|||+|+++.+.+.+ .+-++....+|-..+. .+.+..+..++|++ |-
T Consensus 40 ~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~ 114 (477)
T PTZ00102 40 STFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-----ELAQEFGVRGYPTIKFFN 114 (477)
T ss_pred hhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-----HHHHhcCCCcccEEEEEE
Confidence 45566666554 678999999999988876643 2334555555543321 23333445788977 44
Q ss_pred CCEE
Q 034075 73 GGEL 76 (104)
Q Consensus 73 ~g~~ 76 (104)
+|..
T Consensus 115 ~g~~ 118 (477)
T PTZ00102 115 KGNP 118 (477)
T ss_pred CCce
Confidence 6653
No 173
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.74 E-value=0.00016 Score=49.83 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=47.0
Q ss_pred HHHHHHhcCCCEEEEEcCCChhHHHHHHHH----HhcCCCcEEEEeecCC--Cchh---HHHHHHhcCCCCCccEEEE
Q 034075 4 ERVAKMASERPVVIFSKSSCCICHSIKTLF----CDFGVNPAVYELDEMP--GGRE---LEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 4 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~~~vd~~~--~~~~---~~~~l~~~~~~~tvP~ifi 72 (104)
+.++++.+...+++|..+.||+|++...+| +++|++...+.+|... ...+ -...... -+...+|.+|+
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~-l~v~~~PAl~L 212 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQR-LGVKYFPALML 212 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHh-cCCcccceEEE
Confidence 346777788889999999999999988888 5668888778877522 1111 0111223 34488999986
No 174
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=97.70 E-value=0.00046 Score=38.84 Aligned_cols=58 Identities=16% Similarity=0.191 Sum_probs=45.3
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHc
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLN 89 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~ 89 (104)
+.+|+|.++..+|+-.+++|+.+... ++. .+....+|.+..+|+.++|++.+++..++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~----------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~ 71 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPW----------RSPTGKLPALLTSGTKISGPEKIIEYLRK 71 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecC-CCC----------CCCCCccCEEEECCEEecChHHHHHHHHH
Confidence 46899999999999999999866333 222 12346799999999999999988886543
No 175
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.69 E-value=0.001 Score=40.85 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=45.1
Q ss_pred HHHHHHHhcCCC--EEEEEc--CCCh---hHHHHHHHHHhcC--CCcEEEEeecCCCchhHHHHHHhcCCCC--CccEE-
Q 034075 3 MERVAKMASERP--VVIFSK--SSCC---ICHSIKTLFCDFG--VNPAVYELDEMPGGRELEQDLQRLGCSP--AVPAV- 70 (104)
Q Consensus 3 ~~~~~~~~~~~~--v~vf~~--~~Cp---~C~~~~~~L~~~~--v~~~~~~vd~~~~~~~~~~~l~~~~~~~--tvP~i- 70 (104)
...+.+.+..++ +|.|.. |||. +|.++.+-+.+.. +.+-.+|++...+..+ ..|....+.. .+|+|
T Consensus 8 ~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~--~~L~~~y~I~~~gyPTl~ 85 (116)
T cd03007 8 TVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN--MELGERYKLDKESYPVIY 85 (116)
T ss_pred hhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh--HHHHHHhCCCcCCCCEEE
Confidence 356777887777 577999 9999 9998887775544 4444555543222111 2354444445 89987
Q ss_pred -EECCE
Q 034075 71 -FIGGE 75 (104)
Q Consensus 71 -fi~g~ 75 (104)
|.+|.
T Consensus 86 lF~~g~ 91 (116)
T cd03007 86 LFHGGD 91 (116)
T ss_pred EEeCCC
Confidence 67774
No 176
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.66 E-value=0.00022 Score=40.80 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=24.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhc------CCCcEEEEeec
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF------GVNPAVYELDE 47 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~~~vd~ 47 (104)
|.+|+.+.||+|..+.+.+.+. ++.+..+.+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~ 39 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPL 39 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecccc
Confidence 5789999999999999999764 34455555443
No 177
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.66 E-value=0.00049 Score=42.35 Aligned_cols=20 Identities=25% Similarity=0.427 Sum_probs=16.6
Q ss_pred EEEEEcCCChhHHHHHHHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFC 34 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~ 34 (104)
++.|+.+|||.|++..+.|.
T Consensus 22 ll~Fwa~wC~~C~~~~p~l~ 41 (131)
T cd03009 22 GLYFSASWCPPCRAFTPKLV 41 (131)
T ss_pred EEEEECCCChHHHHHhHHHH
Confidence 56788999999998877764
No 178
>PRK10357 putative glutathione S-transferase; Provisional
Probab=97.66 E-value=0.00033 Score=46.09 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=52.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE-CCEEEeccHHHHhHHH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI-GGELVGGANQVMSLHL 88 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi-~g~~igg~~~~~~~~~ 88 (104)
.+|+.+.||++++++-+|...|++|+.++++...... .+.+.+....+|++.. +|..+-....+..+..
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~----~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~ 71 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADN----GVAQYNPLGKVPALVTEEGECWFDSPIIAEYIE 71 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCch----hhhhcCCccCCCeEEeCCCCeeecHHHHHHHHH
Confidence 6899999999999999999999999998887533322 2334566789999985 6777766666655443
No 179
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=97.66 E-value=0.00044 Score=39.27 Aligned_cols=69 Identities=20% Similarity=0.158 Sum_probs=49.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHh--cCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQR--LGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~--~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
.++|..+..+.|.+++-+|.+.|++|+.+.++..++ ..+ ... ......+|++..||..+.....+..+.
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~---~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL 72 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAED---LEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAILNYI 72 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHH---HHh-hccccCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence 468888888999999999999999999988874321 111 111 112468999999998887776665543
No 180
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.00019 Score=44.19 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=31.1
Q ss_pred CCChhHHHHHHHHHh----c--CCCcEEEEeecCCCchhHHHHHHhcCCC-CCccEEEECC
Q 034075 21 SSCCICHSIKTLFCD----F--GVNPAVYELDEMPGGRELEQDLQRLGCS-PAVPAVFIGG 74 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~----~--~v~~~~~~vd~~~~~~~~~~~l~~~~~~-~tvP~ifi~g 74 (104)
+|||+|.+|.+.+.+ . ++.+..+++-..+....-...++...+. ..+|++.-=+
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~ 103 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWK 103 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEc
Confidence 699999999988744 2 2345556665555433311122222232 6788886544
No 181
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.61 E-value=0.00062 Score=51.99 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=34.6
Q ss_pred EEEEEcCCChhHHHHHHHH-------HhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE-E--CCEE
Q 034075 15 VVIFSKSSCCICHSIKTLF-------CDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF-I--GGEL 76 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L-------~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if-i--~g~~ 76 (104)
++.|+.+||+.|+..++.. ++.+ ++..+.+|.+.+..+.++.++++ +...+|+++ + ||+.
T Consensus 478 lVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~~~-~v~g~Pt~~~~~~~G~~ 547 (571)
T PRK00293 478 MLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLKHY-NVLGLPTILFFDAQGQE 547 (571)
T ss_pred EEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHHHc-CCCCCCEEEEECCCCCC
Confidence 4569999999999886642 1222 34444444333322333444444 458899885 3 4554
No 182
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.61 E-value=0.00032 Score=43.41 Aligned_cols=20 Identities=25% Similarity=0.427 Sum_probs=16.4
Q ss_pred EEEEEcCCChhHHHHHHHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFC 34 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~ 34 (104)
++.|+.+|||.|+.....|.
T Consensus 21 ll~F~atwC~~C~~~~p~l~ 40 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLV 40 (132)
T ss_pred EEEEECCCCchHHHHHHHHH
Confidence 56788999999998777764
No 183
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.60 E-value=0.00038 Score=43.61 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=36.4
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHHH-Hhc------CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE-EEC
Q 034075 4 ERVAKMASERP--VVIFSKSSCCICHSIKTLF-CDF------GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV-FIG 73 (104)
Q Consensus 4 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~L-~~~------~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i-fi~ 73 (104)
+.+..+-+.++ ++.|+++|||+|+++.+.. .+. +-.|..++++.+..... +.. .+ ..+|++ |+|
T Consensus 14 eal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~----~~~-~g-~~vPtivFld 87 (130)
T cd02960 14 EGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKN----LSP-DG-QYVPRIMFVD 87 (130)
T ss_pred HHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCC----cCc-cC-cccCeEEEEC
Confidence 34445555555 4668889999999988864 222 22466566664332111 111 23 568987 553
No 184
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=97.54 E-value=0.00035 Score=40.55 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=32.6
Q ss_pred EEEEEcCCChhHHHHHHHHHh----cC--CCcEEEEeecCCCchhHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCD----FG--VNPAVYELDEMPGGRELEQDLQRL 61 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~----~~--v~~~~~~vd~~~~~~~~~~~l~~~ 61 (104)
++.|+++|||.|.+..+.|.+ ++ -.++.+-|+.+++..+.++.+++.
T Consensus 5 ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 5 LLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp EEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 678999999999988888744 34 566777776666656666666655
No 185
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00029 Score=52.75 Aligned_cols=69 Identities=17% Similarity=0.222 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCCE--EEEEcCCChhHHH-------HHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--E
Q 034075 3 MERVAKMASERPV--VIFSKSSCCICHS-------IKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--F 71 (104)
Q Consensus 3 ~~~~~~~~~~~~v--~vf~~~~Cp~C~~-------~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--f 71 (104)
.+.+.+.+..+.+ +-|+.|||.+|.+ +.+.|.+.+-+.....||-..+ ..++...+.+.+|++ |
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-----~~~~~~y~v~gyPTlkiF 106 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-----SDLASKYEVRGYPTLKIF 106 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-----hhhHhhhcCCCCCeEEEE
Confidence 4567788888874 5699999999984 5556667666777777775544 124444445778876 7
Q ss_pred ECCEE
Q 034075 72 IGGEL 76 (104)
Q Consensus 72 i~g~~ 76 (104)
.||+.
T Consensus 107 rnG~~ 111 (493)
T KOG0190|consen 107 RNGRS 111 (493)
T ss_pred ecCCc
Confidence 89885
No 186
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=97.49 E-value=0.0012 Score=44.02 Aligned_cols=72 Identities=14% Similarity=0.236 Sum_probs=50.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE-----CCE--EEeccHHHHhHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI-----GGE--LVGGANQVMSLH 87 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi-----~g~--~igg~~~~~~~~ 87 (104)
+++|+.+ +|+|++++-+|.++|++|+.++++.... ....+.+...+....+|++.. +|+ .+-...-+.++.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~-~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKG-GQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCccc-ccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 4688876 6999999999999999999998875432 111123455666789999987 452 466655565554
Q ss_pred H
Q 034075 88 L 88 (104)
Q Consensus 88 ~ 88 (104)
.
T Consensus 80 ~ 80 (215)
T PRK13972 80 A 80 (215)
T ss_pred H
Confidence 3
No 187
>PLN02395 glutathione S-transferase
Probab=97.49 E-value=0.0011 Score=43.87 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=54.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLN 89 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~ 89 (104)
+++|+.+.| .+.+++-+|.+.|++|+.+.++..... ...+.+.+.+...++|++..+|..+.....+.++..+
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~ 75 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGE-HKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAE 75 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCC-cCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHH
Confidence 688987775 479999999999999999888754211 1112344556678999999999888888877776553
No 188
>PLN02309 5'-adenylylsulfate reductase
Probab=97.47 E-value=0.00031 Score=52.29 Aligned_cols=58 Identities=12% Similarity=0.233 Sum_probs=34.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFG-----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGE 75 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~ 75 (104)
++.|+.+|||+|+.+.+.+.+.. ..+.+..+|.+.+..+ ...+..+..++|++ |.+|.
T Consensus 369 lV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~---la~~~~~I~~~PTil~f~~g~ 433 (457)
T PLN02309 369 LVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKE---FAKQELQLGSFPTILLFPKNS 433 (457)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchH---HHHhhCCCceeeEEEEEeCCC
Confidence 67899999999999998886542 2244444443312111 22222345788987 44553
No 189
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=97.47 E-value=0.001 Score=40.59 Aligned_cols=32 Identities=13% Similarity=0.343 Sum_probs=22.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCC--CcEEEEee
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGV--NPAVYELD 46 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v--~~~~~~vd 46 (104)
++.|+.+|||.|++..+.|.+..- .+.++-|+
T Consensus 29 vv~F~a~~C~~C~~~~~~l~~l~~~~~~~vv~v~ 62 (127)
T cd03010 29 LLNVWASWCAPCREEHPVLMALARQGRVPIYGIN 62 (127)
T ss_pred EEEEEcCcCHHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 678999999999998888855421 24444444
No 190
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=97.46 E-value=0.00094 Score=39.90 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=32.0
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFG----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if 71 (104)
++.|+.+|||.|++..+.+++.. -...++-+. +.+..+..+.+++... ..+|.++
T Consensus 25 vl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~-~~~p~~~ 83 (114)
T cd02967 25 LLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKKHGL-EAFPYVL 83 (114)
T ss_pred EEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCC-CCCcEEe
Confidence 67788999999998888885542 223444332 2333334444444432 3467654
No 191
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.46 E-value=0.00078 Score=44.22 Aligned_cols=22 Identities=9% Similarity=0.265 Sum_probs=18.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
++.|+.+|||.|++..+.|.+.
T Consensus 72 vv~FwatwC~~C~~e~p~l~~l 93 (185)
T PRK15412 72 LLNVWATWCPTCRAEHQYLNQL 93 (185)
T ss_pred EEEEECCCCHHHHHHHHHHHHH
Confidence 5679999999999988887554
No 192
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00026 Score=46.52 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=50.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE-ECCEEEeccHHHHhHHH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF-IGGELVGGANQVMSLHL 88 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if-i~g~~igg~~~~~~~~~ 88 (104)
.+|....||||.+++=++-=+|++++..-++.+++... .++-|...||.+. -+|++.+..=++..+..
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp-----~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d 70 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETP-----IRMIGQKQVPILQKEDGRAMPESLDIVHYVD 70 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCcccCh-----hhhhcccccceEEccccccchhhhHHHHHHH
Confidence 46888999999999999999999998877766554322 2234568999987 57788877666655544
No 193
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.39 E-value=0.002 Score=42.46 Aligned_cols=30 Identities=13% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEcCCChhHHHHHHHH----HhcCCCcEEEE
Q 034075 15 VVIFSKSSCCICHSIKTLF----CDFGVNPAVYE 44 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L----~~~~v~~~~~~ 44 (104)
++.|+++|||.|++..+.+ ++.++.+..+.
T Consensus 78 vl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 78 LLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 5679999999999876666 33455544444
No 194
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=97.37 E-value=0.00054 Score=41.49 Aligned_cols=24 Identities=17% Similarity=0.348 Sum_probs=19.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcC
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFG 37 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~ 37 (104)
-++.|+.+|||.|+...+.|.+..
T Consensus 23 ~vl~F~~~~C~~C~~~~~~l~~~~ 46 (123)
T cd03011 23 VLVYFWATWCPVCRFTSPTVNQLA 46 (123)
T ss_pred EEEEEECCcChhhhhhChHHHHHH
Confidence 467888999999999987776543
No 195
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.37 E-value=0.0012 Score=42.86 Aligned_cols=22 Identities=14% Similarity=0.274 Sum_probs=18.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
++.|+.+|||.|++..+.+++.
T Consensus 67 ll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 67 LLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEECCcCHHHHHHHHHHHHH
Confidence 5678899999999988777554
No 196
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=97.35 E-value=0.0018 Score=43.55 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 22 SCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 22 ~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
.||+|.++-..|...+++|.+.-||......+ +...+....+|.+-.||+.+-..+.+.+..+
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~----f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le 82 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPEW----FLDISPGGKPPVLKFDEKWVTDSDKIEEFLE 82 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcHH----HHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence 69999999999999999998877776554443 4455666899999999999999887766544
No 197
>PRK11752 putative S-transferase; Provisional
Probab=97.32 E-value=0.0021 Score=44.49 Aligned_cols=76 Identities=9% Similarity=0.185 Sum_probs=53.2
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhc------CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECC----EEEecc
Q 034075 11 SERPVVIFSKSSCCICHSIKTLFCDF------GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGG----ELVGGA 80 (104)
Q Consensus 11 ~~~~v~vf~~~~Cp~C~~~~~~L~~~------~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g----~~igg~ 80 (104)
..+++++|+. .+|+|++++-+|.++ |++|+.+.++..... ...+.+.+.+...++|++..++ ..+...
T Consensus 41 ~~~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~-~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES 118 (264)
T PRK11752 41 GKHPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGD-QFSSGFVEINPNSKIPALLDRSGNPPIRVFES 118 (264)
T ss_pred CCCCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCcccc-ccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcH
Confidence 3457899986 499999999999997 888998877643221 1112344556678999998753 467776
Q ss_pred HHHHhHHH
Q 034075 81 NQVMSLHL 88 (104)
Q Consensus 81 ~~~~~~~~ 88 (104)
..+.++..
T Consensus 119 ~AIl~YL~ 126 (264)
T PRK11752 119 GAILLYLA 126 (264)
T ss_pred HHHHHHHH
Confidence 66666554
No 198
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=97.30 E-value=0.0027 Score=35.97 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=44.1
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
+..|.|.++..+|+..|++|+.++....+. .+....+|.+.+||+.|++..-+..+..
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~----------~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF----------MSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCccc----------cCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 467889999999999999999885421111 1223679999999999999887777654
No 199
>PTZ00102 disulphide isomerase; Provisional
Probab=97.29 E-value=0.00054 Score=50.57 Aligned_cols=31 Identities=6% Similarity=0.343 Sum_probs=22.8
Q ss_pred HHHH-hcCCC--EEEEEcCCChhHHHHHHHHHhc
Q 034075 6 VAKM-ASERP--VVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 6 ~~~~-~~~~~--v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
+++. .++.+ ++.|+++||++|+.+.+.+.+.
T Consensus 367 f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~ 400 (477)
T PTZ00102 367 FEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNEL 400 (477)
T ss_pred hHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHH
Confidence 4444 34443 6779999999999999988654
No 200
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=97.22 E-value=0.0018 Score=40.87 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=55.6
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEecc---HHHHhHH
Q 034075 11 SERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGA---NQVMSLH 87 (104)
Q Consensus 11 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~---~~~~~~~ 87 (104)
...++++|-+|+|.=|+.-.+.|+..|++...+..+.... +++.+.-.....+==+..|||.+|-|- +++..+.
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~a---lK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll 100 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLA---LKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLL 100 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHH---HHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHH
Confidence 3457999999999999999999999998888777763332 333332222224455889999999886 5666666
Q ss_pred HcCC
Q 034075 88 LNRS 91 (104)
Q Consensus 88 ~~g~ 91 (104)
+++.
T Consensus 101 ~~~p 104 (149)
T COG3019 101 AEKP 104 (149)
T ss_pred hCCC
Confidence 6554
No 201
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=97.17 E-value=0.00092 Score=46.35 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=47.2
Q ss_pred CEEEEEcC-------CChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHh
Q 034075 14 PVVIFSKS-------SCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMS 85 (104)
Q Consensus 14 ~v~vf~~~-------~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~ 85 (104)
-|.+|.-+ -.|||.++..+|+-.+++|+.++-... ..+...++|-|-+||+++.+.+-+..
T Consensus 45 ~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-----------~rSr~G~lPFIELNGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 45 TVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-----------RRSRNGTLPFIELNGEHIADSDLIED 112 (281)
T ss_pred eEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-----------eeccCCCcceEEeCCeeccccHHHHH
Confidence 35555553 368999999999999999998876532 12445789999999999999886544
No 202
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=97.16 E-value=0.0015 Score=38.19 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=18.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
-++.|+.+|||.|.+....|.+.
T Consensus 22 ~ll~f~~~~C~~C~~~~~~l~~~ 44 (116)
T cd02966 22 VLVNFWASWCPPCRAEMPELEAL 44 (116)
T ss_pred EEEEeecccChhHHHHhHHHHHH
Confidence 47788899999999777776443
No 203
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.14 E-value=0.0026 Score=37.26 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=33.1
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEeecCCCchhHHHHHHhcCCCC--CccEEEE
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFG------VNPAVYELDEMPGGRELEQDLQRLGCSP--AVPAVFI 72 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~~~vd~~~~~~~~~~~l~~~~~~~--tvP~ifi 72 (104)
-+++|+.+||+.|..+++.|++.. +.+-.+|++..+ +.+...+ .. ++|++.+
T Consensus 15 ~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~------~~~~~~~-i~~~~~P~~~~ 74 (103)
T cd02982 15 LLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFG------RHLEYFG-LKEEDLPVIAI 74 (103)
T ss_pred EEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhH------HHHHHcC-CChhhCCEEEE
Confidence 467788899999999999996642 334444444322 1233333 34 8998854
No 204
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.12 E-value=0.00067 Score=43.68 Aligned_cols=43 Identities=16% Similarity=0.214 Sum_probs=30.9
Q ss_pred EEEcCCChhHHHHHHHH-------HhcCCCcEEEEeecCCCchhHHHHHH
Q 034075 17 IFSKSSCCICHSIKTLF-------CDFGVNPAVYELDEMPGGRELEQDLQ 59 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L-------~~~~v~~~~~~vd~~~~~~~~~~~l~ 59 (104)
.|+..|||.|+.....| ++.+-+++++=|+.+.+..++.+++.
T Consensus 39 yFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~ 88 (157)
T KOG2501|consen 39 YFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYML 88 (157)
T ss_pred EEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHH
Confidence 46668999999766655 33456799999988877766555555
No 205
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.09 E-value=0.004 Score=39.86 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=16.6
Q ss_pred CEEEEEcCCChhHHHHHHHHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFC 34 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~ 34 (104)
-++.|+.+|||+|+.....|.
T Consensus 64 ~~l~f~a~~C~~C~~~~~~l~ 84 (173)
T PRK03147 64 VFLNFWGTWCKPCEKEMPYMN 84 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHH
Confidence 367888999999998766663
No 206
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0019 Score=44.69 Aligned_cols=56 Identities=29% Similarity=0.446 Sum_probs=38.7
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCc-----EEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNP-----AVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~-----~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~i 77 (104)
+|=|+.+||..|+++.+++..+.=+| -.+|||.-.. .+.-.|....|++ |.||..|
T Consensus 25 ~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~-------taa~~gV~amPTFiff~ng~ki 87 (288)
T KOG0908|consen 25 VVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRG-------TAATNGVNAMPTFIFFRNGVKI 87 (288)
T ss_pred EEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhc-------hhhhcCcccCceEEEEecCeEe
Confidence 56699999999999999998876544 3455553222 2222455778866 7899765
No 207
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=97.06 E-value=0.011 Score=33.12 Aligned_cols=70 Identities=17% Similarity=0.257 Sum_probs=48.2
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCC-CCccEEEEC-CEEEeccHHHHhHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCS-PAVPAVFIG-GELVGGANQVMSLH 87 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~-~tvP~ifi~-g~~igg~~~~~~~~ 87 (104)
+.+|..+. .|.+++-+|...|++|+.+.++...... ..+.+...... ..+|.+..+ |..+...-.+..+.
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~-~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YL 74 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEH-KSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYL 74 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGG-GSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccc-cchhhhhcccccceeeEEEECCCCEEEcHHHHHHHh
Confidence 45566666 8899999999999999999888533221 11334444555 899999999 98888776665543
No 208
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=97.03 E-value=0.0012 Score=44.24 Aligned_cols=67 Identities=19% Similarity=0.348 Sum_probs=35.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCC--c--EEEEeec-------CC----CchhHHHHHHhcC--CCCCccEEEECCE-E
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVN--P--AVYELDE-------MP----GGRELEQDLQRLG--CSPAVPAVFIGGE-L 76 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~--~--~~~~vd~-------~~----~~~~~~~~l~~~~--~~~tvP~ifi~g~-~ 76 (104)
|.+||+.+|+.|.-+-++|.++.-. + --..||- ++ ...+-|+...+.. ....+|+++|||+ .
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~~ 81 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGREH 81 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTEE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCeee
Confidence 6799999999999999999665322 1 1122222 11 1112344444433 3468999999995 5
Q ss_pred EeccH
Q 034075 77 VGGAN 81 (104)
Q Consensus 77 igg~~ 81 (104)
.+|.+
T Consensus 82 ~~g~~ 86 (202)
T PF06764_consen 82 RVGSD 86 (202)
T ss_dssp EETT-
T ss_pred eeccC
Confidence 66665
No 209
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.02 E-value=0.003 Score=44.89 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=46.8
Q ss_pred CHHHHHHHHhcCCCEE--EEEcCCChhHHHHHHHHHhcCCCc---------EEEEeecCCCchhHHHHHHhcCCCCCccE
Q 034075 1 MAMERVAKMASERPVV--IFSKSSCCICHSIKTLFCDFGVNP---------AVYELDEMPGGRELEQDLQRLGCSPAVPA 69 (104)
Q Consensus 1 ~a~~~~~~~~~~~~v~--vf~~~~Cp~C~~~~~~L~~~~v~~---------~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ 69 (104)
|+-+++..+++++.++ -|+++|||+++..+.++.+....| ..-.||-+.+ ..++.......+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-----~~ia~ky~I~KyPT 75 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-----DDIADKYHINKYPT 75 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-----hHHhhhhccccCce
Confidence 4567788899988854 488999999999999997653221 2223332222 23443333456666
Q ss_pred E--EECCEEEe
Q 034075 70 V--FIGGELVG 78 (104)
Q Consensus 70 i--fi~g~~ig 78 (104)
+ |.||....
T Consensus 76 lKvfrnG~~~~ 86 (375)
T KOG0912|consen 76 LKVFRNGEMMK 86 (375)
T ss_pred eeeeeccchhh
Confidence 5 88997553
No 210
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=97.01 E-value=0.013 Score=33.47 Aligned_cols=71 Identities=13% Similarity=-0.022 Sum_probs=46.1
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchh-HHHHHHhc----CCCCCccEEEECCEEEeccHHHHhHH
Q 034075 17 IFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRE-LEQDLQRL----GCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~-~~~~l~~~----~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
+|+-..-+.|.+++-+|...|++|+.+.++....... -.+.+... ....++|++..+|..+.-...+..+.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHH
Confidence 3444445788899999999999999988875431100 00112111 14579999999998887766666554
No 211
>PRK10542 glutathionine S-transferase; Provisional
Probab=97.00 E-value=0.005 Score=40.32 Aligned_cols=72 Identities=17% Similarity=0.218 Sum_probs=48.0
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE-CCEEEeccHHHHhHHH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI-GGELVGGANQVMSLHL 88 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi-~g~~igg~~~~~~~~~ 88 (104)
.+|+.+. +.+.++.-+|.++|++|+.+.++.........+.+...+....+|++.+ +|..+.....+.++..
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~ 74 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLA 74 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHH
Confidence 4566543 3467788889999999999888753221001123555666789999986 6677877777766553
No 212
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.97 E-value=0.00079 Score=41.54 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=25.0
Q ss_pred CCChhHHHHHHHHHhc----CCCcE--EEEeecCCCchhHHHHHHh--cCCCCCccEEEE
Q 034075 21 SSCCICHSIKTLFCDF----GVNPA--VYELDEMPGGRELEQDLQR--LGCSPAVPAVFI 72 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~----~v~~~--~~~vd~~~~~~~~~~~l~~--~~~~~tvP~ifi 72 (104)
+|||.|.++...+++. .-... .+.|...+...+-...++. ......+|+++-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEE
Confidence 5999999999887442 22334 4455322211110012222 234578999974
No 213
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.96 E-value=0.00083 Score=46.34 Aligned_cols=31 Identities=19% Similarity=0.316 Sum_probs=22.5
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc---C-CCcEEEE
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDF---G-VNPAVYE 44 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~---~-v~~~~~~ 44 (104)
.|++|+.+.||||+++...+..+ | +.+.++.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip 154 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHIL 154 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEe
Confidence 38899999999999997776432 3 5555443
No 214
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0035 Score=41.40 Aligned_cols=71 Identities=11% Similarity=0.241 Sum_probs=47.7
Q ss_pred EEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcC
Q 034075 18 FSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNR 90 (104)
Q Consensus 18 f~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g 90 (104)
|+.+.|.+ +++-.|.-+|++|+++-++--.+..+.-..+++.+...+||++.+||..+...-.++++.++-
T Consensus 11 YWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt 81 (217)
T KOG0868|consen 11 YWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEET 81 (217)
T ss_pred hhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhc
Confidence 45567765 555556556667666555443333333345777777789999999999998877777776653
No 215
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.93 E-value=0.0092 Score=35.95 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=39.3
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHH-HHHhcC------CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE-EE-
Q 034075 4 ERVAKMASERP--VVIFSKSSCCICHSIKT-LFCDFG------VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV-FI- 72 (104)
Q Consensus 4 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~-~L~~~~------v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i-fi- 72 (104)
+.++..-+.++ ++.+..+||++|+.+.+ +|.+.. -.|..+.+|.... +..+ +....+...+|++ |+
T Consensus 8 ~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~--e~~~-~~~~~~~~~~P~~~~i~ 84 (114)
T cd02958 8 DAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS--EGQR-FLQSYKVDKYPHIAIID 84 (114)
T ss_pred HHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc--cHHH-HHHHhCccCCCeEEEEe
Confidence 34444444455 45677799999998754 453322 2455555554321 1222 3343445789988 45
Q ss_pred --CCEEE
Q 034075 73 --GGELV 77 (104)
Q Consensus 73 --~g~~i 77 (104)
+|+.+
T Consensus 85 ~~~g~~l 91 (114)
T cd02958 85 PRTGEVL 91 (114)
T ss_pred CccCcEe
Confidence 45544
No 216
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.93 E-value=0.0017 Score=46.17 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=36.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcE-------EEEeecCCCchhHHHHHHhcCCCCCccEE-EECCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPA-------VYELDEMPGGRELEQDLQRLGCSPAVPAV-FIGGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~-------~~~vd~~~~~~~~~~~l~~~~~~~tvP~i-fi~g~~i 77 (104)
.+=|..|||.+|++..+++++-|.+.. +-.+|...- .+++..-+....|+| |..|.+.
T Consensus 47 ~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f-----~aiAnefgiqGYPTIk~~kgd~a 112 (468)
T KOG4277|consen 47 FVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF-----PAIANEFGIQGYPTIKFFKGDHA 112 (468)
T ss_pred EEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc-----hhhHhhhccCCCceEEEecCCee
Confidence 677999999999999999987765543 333332211 233333445788887 4555443
No 217
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=96.79 E-value=0.0068 Score=35.46 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=34.3
Q ss_pred EEEEcC-CChhHH------HHHHHHH----h----cCCCcEEEEeecCCCchhHHHHHHhc-CCCCCccEEEECCEEEec
Q 034075 16 VIFSKS-SCCICH------SIKTLFC----D----FGVNPAVYELDEMPGGRELEQDLQRL-GCSPAVPAVFIGGELVGG 79 (104)
Q Consensus 16 ~vf~~~-~Cp~C~------~~~~~L~----~----~~v~~~~~~vd~~~~~~~~~~~l~~~-~~~~tvP~ifi~g~~igg 79 (104)
+||++. -|+.|. ..-.||+ + ..+.++++|+...++...-++...+. ...--.|.+.++|+.||.
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~E 80 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAE 80 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEec
Confidence 467774 588884 4444553 2 23456788887665543333333332 445789999999999963
No 218
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0082 Score=40.59 Aligned_cols=59 Identities=25% Similarity=0.322 Sum_probs=44.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCcE--EEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEe
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFGVNPA--VYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVG 78 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~--~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~ig 78 (104)
..|.||+..+|..|-..-+.|+++|.--. +++....+. .++ ..+..++|.+|+||+.+-
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f-----~~~--~~~V~SvP~Vf~DGel~~ 71 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPF-----LAF--EKGVISVPSVFIDGELVY 71 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChH-----HHh--hcceeecceEEEcCeEEE
Confidence 46899999999999999999999997654 444432221 122 235689999999999873
No 219
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0092 Score=38.61 Aligned_cols=19 Identities=21% Similarity=0.695 Sum_probs=17.3
Q ss_pred EEEEEcCCChhHHHHHHHH
Q 034075 15 VVIFSKSSCCICHSIKTLF 33 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L 33 (104)
+.||.+++|+||.+.++-+
T Consensus 46 llmfes~~C~yC~~~KKd~ 64 (182)
T COG2143 46 LLMFESNGCSYCERFKKDL 64 (182)
T ss_pred EEEEcCCCChHHHHHHHhh
Confidence 7899999999999988776
No 220
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.61 E-value=0.0044 Score=47.23 Aligned_cols=91 Identities=18% Similarity=0.262 Sum_probs=57.6
Q ss_pred HHHHHhcCCC---E-EEEEcCCChhHHHHHHHHHh------cCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE-C
Q 034075 5 RVAKMASERP---V-VIFSKSSCCICHSIKTLFCD------FGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI-G 73 (104)
Q Consensus 5 ~~~~~~~~~~---v-~vf~~~~Cp~C~~~~~~L~~------~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi-~ 73 (104)
++++...+++ | +=|+.+||-.|+..++..-. .--.+.....|-..+..+.++.|++.+. -.+|.+++ +
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~-~G~P~~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGV-FGVPTYLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCC-CCCCEEEEEC
Confidence 5666666655 3 34999999999998887632 1123455556665666678888988875 88998744 3
Q ss_pred --CEEEeccHHHHhHHHcCCcHHHHhhc
Q 034075 74 --GELVGGANQVMSLHLNRSLIPMLKRV 99 (104)
Q Consensus 74 --g~~igg~~~~~~~~~~g~L~~~L~~~ 99 (104)
|+..-. +-.....+.+.++|+++
T Consensus 543 ~~g~e~~~---l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 543 PQGSEPEI---LTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCcCcC---CcceecHHHHHHHHHHh
Confidence 332222 33444555666666554
No 221
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=96.59 E-value=0.021 Score=35.54 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=22.1
Q ss_pred EEEEEcC-CChhHHHHHHHHHhc-------CCCcEEEEeec
Q 034075 15 VVIFSKS-SCCICHSIKTLFCDF-------GVNPAVYELDE 47 (104)
Q Consensus 15 v~vf~~~-~Cp~C~~~~~~L~~~-------~v~~~~~~vd~ 47 (104)
++.|+.+ |||.|+.-...|++. ++.+..+..+.
T Consensus 32 vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~ 72 (146)
T PF08534_consen 32 VVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDD 72 (146)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESS
T ss_pred EEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccC
Confidence 6778888 999999777665433 45555555543
No 222
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=96.57 E-value=0.021 Score=32.07 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=44.1
Q ss_pred CChhHHHHHHHHHhcCCC---cEEEEeecCCCchhHHHHHHhcCCCCCccEEEE-CCEEEeccHHHHhHH
Q 034075 22 SCCICHSIKTLFCDFGVN---PAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI-GGELVGGANQVMSLH 87 (104)
Q Consensus 22 ~Cp~C~~~~~~L~~~~v~---~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi-~g~~igg~~~~~~~~ 87 (104)
--|.|.++..+|+-.+.+ ++++... ++. .+....+|.+.. +|+.+.|+.++.++.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~-n~~----------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN-NPW----------LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC-CCC----------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 479999999999999999 6666554 232 144578999999 999999999998764
No 223
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.56 E-value=0.016 Score=47.44 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=18.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
++-|+.+|||.|++..+.|+++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHH
Confidence 5669999999999988888544
No 224
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.55 E-value=0.0062 Score=38.56 Aligned_cols=55 Identities=9% Similarity=0.000 Sum_probs=30.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhc----C-CCcEEEEeecC-------CCchhHHHHHHhcCCCCCccEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF----G-VNPAVYELDEM-------PGGRELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~----~-v~~~~~~vd~~-------~~~~~~~~~l~~~~~~~tvP~if 71 (104)
++.|+.+||| |.+-...|.+. + -.+.++-|..+ .+..++++.+++..+ .++|.+.
T Consensus 26 vl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~-~~fp~~~ 92 (152)
T cd00340 26 LIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYG-VTFPMFA 92 (152)
T ss_pred EEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHHHHHhcC-CCceeee
Confidence 5668999999 99866666443 1 22444444321 122335555544233 4677653
No 225
>smart00594 UAS UAS domain.
Probab=96.52 E-value=0.037 Score=33.86 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=35.2
Q ss_pred HHHHHHhcCCC--EEEEEcCCChhHHHHHHH-HHhcC------CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 4 ERVAKMASERP--VVIFSKSSCCICHSIKTL-FCDFG------VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 4 ~~~~~~~~~~~--v~vf~~~~Cp~C~~~~~~-L~~~~------v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
+.+++..+..| ++.+..+||++|+...+- |.+.. -.|...-+|.... +-. .+....+..++|.+.+
T Consensus 18 ~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~--eg~-~l~~~~~~~~~P~~~~ 92 (122)
T smart00594 18 AAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTS--EGQ-RVSQFYKLDSFPYVAI 92 (122)
T ss_pred HHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCCh--hHH-HHHHhcCcCCCCEEEE
Confidence 34445555543 566777999999976553 32221 1354444443221 112 2444444578998854
No 226
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=96.51 E-value=0.01 Score=36.85 Aligned_cols=54 Identities=28% Similarity=0.382 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCCcEEEEeecCCCchh----HHHHHHhcCCCCCccEEEECCEEE--eccHH
Q 034075 28 SIKTLFCDFGVNPAVYELDEMPGGRE----LEQDLQRLGCSPAVPAVFIGGELV--GGANQ 82 (104)
Q Consensus 28 ~~~~~L~~~~v~~~~~~vd~~~~~~~----~~~~l~~~~~~~tvP~ifi~g~~i--gg~~~ 82 (104)
.+.++|++.|++...+++.++|.... +.+.|...+. ..+|.++|||+.+ |.|-.
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~-e~LPitlVdGeiv~~G~YPt 90 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGA-EALPITLVDGEIVKTGRYPT 90 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-G-GG-SEEEETTEEEEESS---
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCc-ccCCEEEECCEEEEecCCCC
Confidence 56677889999999999998886533 5666665554 8999999999976 66643
No 227
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=96.50 E-value=0.02 Score=34.93 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=17.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
++.|+++|||.|.+....|++.
T Consensus 27 vl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 27 LLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 6778899999999877766443
No 228
>PTZ00057 glutathione s-transferase; Provisional
Probab=96.46 E-value=0.037 Score=36.61 Aligned_cols=74 Identities=11% Similarity=0.132 Sum_probs=52.0
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCch-hHHHHHH-hcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGR-ELEQDLQ-RLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~-~~~~~l~-~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
++++|+.+..+.|..++-+|...|++|+.+.++...+.. +..+... ..+....+|++..||..+....-+..+.
T Consensus 4 ~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 4 EIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred ceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 478898888899999999999999999998774321100 1111111 2455689999999998888777665543
No 229
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=96.44 E-value=0.0081 Score=45.58 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=18.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
++.|+++|||.|++..+.|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 5679999999999988888544
No 230
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.42 E-value=0.011 Score=39.29 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=15.2
Q ss_pred EEEEEcCCChhHHHHHHHHH
Q 034075 15 VVIFSKSSCCICHSIKTLFC 34 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~ 34 (104)
++.|+.+|||.|.+-.+.|.
T Consensus 43 lv~fwAswC~~C~~e~p~L~ 62 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMN 62 (199)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 56799999999997555543
No 231
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.41 E-value=0.0093 Score=43.59 Aligned_cols=21 Identities=19% Similarity=0.551 Sum_probs=18.1
Q ss_pred EEEEEcCCChhHHHHHHHHHh
Q 034075 15 VVIFSKSSCCICHSIKTLFCD 35 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~ 35 (104)
++.|+++||++|+...+.+.+
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~ 388 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEE 388 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 667999999999999888855
No 232
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.031 Score=40.92 Aligned_cols=71 Identities=18% Similarity=0.344 Sum_probs=43.4
Q ss_pred HHHHHHhcCCCEEEEEcCCChhHHHHHH---HHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEec
Q 034075 4 ERVAKMASERPVVIFSKSSCCICHSIKT---LFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGG 79 (104)
Q Consensus 4 ~~~~~~~~~~~v~vf~~~~Cp~C~~~~~---~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg 79 (104)
+.++.+-.+-.+.-|.+-.|..|..+.+ ++.-++......-||-.- +++...... ..+||++|+||+..|.
T Consensus 109 eqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~----Fq~Evear~-IMaVPtvflnGe~fg~ 182 (520)
T COG3634 109 EQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGAL----FQDEVEARN-IMAVPTVFLNGEEFGQ 182 (520)
T ss_pred HHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchh----hHhHHHhcc-ceecceEEEcchhhcc
Confidence 3444444444577777766666655554 455566666666666322 344444333 4899999999997764
No 233
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.036 Score=37.59 Aligned_cols=74 Identities=12% Similarity=0.188 Sum_probs=56.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHL 88 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~ 88 (104)
++.+|+.+.-|.|+++.-.++..|++|+.+.++... +.+..+.+.......++|++.-+|-.+-....+..+..
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~-ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~ 75 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVK-GEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLA 75 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccc-cccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHH
Confidence 568999999999999999999999999988766432 22233344455666899999999888887766655443
No 234
>PLN02412 probable glutathione peroxidase
Probab=96.28 E-value=0.026 Score=36.42 Aligned_cols=19 Identities=16% Similarity=0.258 Sum_probs=13.9
Q ss_pred EEEEEcCCChhHHHHHHHH
Q 034075 15 VVIFSKSSCCICHSIKTLF 33 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L 33 (104)
++.|+.+|||.|.+-...|
T Consensus 33 lv~f~a~~C~~c~~e~~~l 51 (167)
T PLN02412 33 LIVNVASKCGLTDSNYKEL 51 (167)
T ss_pred EEEEeCCCCCChHHHHHHH
Confidence 4568899999999644444
No 235
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=96.27 E-value=0.019 Score=40.03 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=48.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC---CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCEEEeccHHHHhH---
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFG---VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGELVGGANQVMSL--- 86 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~---v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~igg~~~~~~~--- 86 (104)
|+-++.+.+|-|..+-..|..+. ....++.|...... .... .....+|+| |.+|..++.+-.+.++
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-----~~~~-f~~~~LPtllvYk~G~l~~~~V~l~~~~g~ 223 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-----ASEN-FPDKNLPTLLVYKNGDLIGNFVGLTDLLGD 223 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-----TTTT-S-TTC-SEEEEEETTEEEEEECTGGGCT-T
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-----cccC-CcccCCCEEEEEECCEEEEeEEehHHhcCC
Confidence 55678899999999988886553 23344444322110 0112 223678887 5699887766443332
Q ss_pred -HHcCCcHHHHhhcCCc
Q 034075 87 -HLNRSLIPMLKRVGAI 102 (104)
Q Consensus 87 -~~~g~L~~~L~~~g~~ 102 (104)
+...+|+.+|.++|+|
T Consensus 224 df~~~dlE~~L~~~G~l 240 (265)
T PF02114_consen 224 DFFTEDLEAFLIEYGVL 240 (265)
T ss_dssp T--HHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 2333789999999987
No 236
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.25 E-value=0.011 Score=34.97 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=42.1
Q ss_pred cCCCEEEEEcC-CChhHH------HHHHHHH----hc--C--CCcEEEEeecCCCchhHHHHHHhc-CCCCCccEEEECC
Q 034075 11 SERPVVIFSKS-SCCICH------SIKTLFC----DF--G--VNPAVYELDEMPGGRELEQDLQRL-GCSPAVPAVFIGG 74 (104)
Q Consensus 11 ~~~~v~vf~~~-~Cp~C~------~~~~~L~----~~--~--v~~~~~~vd~~~~~~~~~~~l~~~-~~~~tvP~ifi~g 74 (104)
+..++++|++. -|..|. ..-.||+ ++ + ..|+++||...+.....++...+. ....-.|.|.++|
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivved 82 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVED 82 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcc
Confidence 34568899985 588885 4444553 22 3 445677776444433333333332 4446899999999
Q ss_pred EEEec
Q 034075 75 ELVGG 79 (104)
Q Consensus 75 ~~igg 79 (104)
+.|+.
T Consensus 83 eiVae 87 (106)
T COG4837 83 EIVAE 87 (106)
T ss_pred eEeec
Confidence 99853
No 237
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=96.20 E-value=0.023 Score=37.62 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=26.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHh---cCCCc------EEEEeecC
Q 034075 14 PVVIFSKSSCCICHSIKTLFCD---FGVNP------AVYELDEM 48 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~---~~v~~------~~~~vd~~ 48 (104)
.++-|+.+|||.|+.-.++|.+ .|+++ ..+|.|..
T Consensus 62 ~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 62 RVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred EEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 3677999999999988877754 56777 67777643
No 238
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.14 E-value=0.0053 Score=38.14 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=19.7
Q ss_pred CCEEEEEcCCChhHHHHHHHHHh
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCD 35 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~ 35 (104)
..|++|+.++||+|.++.+.+.+
T Consensus 7 ~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 7 VTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred EEEEEEECCCChhHHHhhHHHHH
Confidence 45889999999999998888765
No 239
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.95 E-value=0.026 Score=36.98 Aligned_cols=19 Identities=16% Similarity=0.228 Sum_probs=14.1
Q ss_pred EEEEcCCChhHHHHHHHHH
Q 034075 16 VIFSKSSCCICHSIKTLFC 34 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~ 34 (104)
++++.+|||.|.+-.+.|.
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 4578999999997554443
No 240
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=95.91 E-value=0.046 Score=33.68 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=16.2
Q ss_pred CEEEEEcCCChh-HHHHHHHHHh
Q 034075 14 PVVIFSKSSCCI-CHSIKTLFCD 35 (104)
Q Consensus 14 ~v~vf~~~~Cp~-C~~~~~~L~~ 35 (104)
-++.|+.+|||. |.+....|.+
T Consensus 25 ~vl~f~~~~C~~~C~~~l~~l~~ 47 (142)
T cd02968 25 VLVYFGYTHCPDVCPTTLANLAQ 47 (142)
T ss_pred EEEEEEcCCCcccCHHHHHHHHH
Confidence 367788999998 9866555533
No 241
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.88 E-value=0.02 Score=37.20 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=33.1
Q ss_pred HHHHHhcCCC-E-EEEEcCCChhHHHHHH-HHHhc------CCCcEEEEeecCCCchhHHHHH----HhcCCCCCccEE-
Q 034075 5 RVAKMASERP-V-VIFSKSSCCICHSIKT-LFCDF------GVNPAVYELDEMPGGRELEQDL----QRLGCSPAVPAV- 70 (104)
Q Consensus 5 ~~~~~~~~~~-v-~vf~~~~Cp~C~~~~~-~L~~~------~v~~~~~~vd~~~~~~~~~~~l----~~~~~~~tvP~i- 70 (104)
.+++.-++++ | +-++.+||.+|+.+.. .+.+. +-.|.-|.+|.+ +..++...+ ...++....|..
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDre-e~Pdid~~y~~~~~~~~~~gGwPl~v 107 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDRE-ERPDIDKIYMNAVQAMSGSGGWPLTV 107 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETT-T-HHHHHHHHHHHHHHHS---SSEEE
T ss_pred HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccc-cCccHHHHHHHHHHHhcCCCCCCceE
Confidence 3444444454 3 3466799999997764 33322 334666666643 333332222 233455678855
Q ss_pred EE--CCEEEe
Q 034075 71 FI--GGELVG 78 (104)
Q Consensus 71 fi--~g~~ig 78 (104)
|+ +|+.+.
T Consensus 108 fltPdg~p~~ 117 (163)
T PF03190_consen 108 FLTPDGKPFF 117 (163)
T ss_dssp EE-TTS-EEE
T ss_pred EECCCCCeee
Confidence 44 666553
No 242
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=95.79 E-value=0.042 Score=37.72 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=15.0
Q ss_pred EEEEEcCCChhHHHHHHHH
Q 034075 15 VVIFSKSSCCICHSIKTLF 33 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L 33 (104)
++.|+.+|||.|..-...|
T Consensus 103 vl~FwAswCp~c~~e~p~L 121 (236)
T PLN02399 103 LIVNVASKCGLTSSNYSEL 121 (236)
T ss_pred EEEEEcCCCcchHHHHHHH
Confidence 6789999999998655444
No 243
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=95.76 E-value=0.03 Score=35.38 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=15.0
Q ss_pred EEEEEcCCChhHHHHHHHH
Q 034075 15 VVIFSKSSCCICHSIKTLF 33 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L 33 (104)
++.|+.+|||+|.+--+-|
T Consensus 26 vv~~~as~C~~c~~~~~~l 44 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRAL 44 (153)
T ss_pred EEEEeCCCCCchhhhHHHH
Confidence 5789999999998655544
No 244
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.63 E-value=0.026 Score=34.62 Aligned_cols=33 Identities=18% Similarity=0.541 Sum_probs=27.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEee
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELD 46 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd 46 (104)
.+++|++|.|+-|..+..+|++..-+|+..-|+
T Consensus 4 tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVN 36 (123)
T PHA03075 4 TLILFGKPLCSVCESISEALKELEDEYDILRVN 36 (123)
T ss_pred eEEEeCCcccHHHHHHHHHHHHhhccccEEEEE
Confidence 478999999999999999998888777765443
No 245
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.46 E-value=0.007 Score=45.53 Aligned_cols=26 Identities=15% Similarity=0.427 Sum_probs=22.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNP 40 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~ 40 (104)
.+-|.+|||+||++..+++++++-.|
T Consensus 388 LvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 388 LVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred EEEEcCcccchhhhhhhHHHHHHHHh
Confidence 67799999999999999998876544
No 246
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.047 Score=39.69 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=38.0
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcC----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE--ECC
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCDFG----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF--IGG 74 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~~~----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if--i~g 74 (104)
..-++.|..|||++|.+..+.+.+.. -......||.+.. ..+.+..+...+|++. -.|
T Consensus 48 ~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~-----~~~~~~y~i~gfPtl~~f~~~ 111 (383)
T KOG0191|consen 48 SPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH-----KDLCEKYGIQGFPTLKVFRPG 111 (383)
T ss_pred CceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh-----HHHHHhcCCccCcEEEEEcCC
Confidence 34589999999999999888876542 2233444553332 2355556668899884 455
No 247
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=95.33 E-value=0.045 Score=32.86 Aligned_cols=71 Identities=15% Similarity=0.256 Sum_probs=44.3
Q ss_pred EEEcCCChhHHHHHHHHHhcCC--CcEEEEeecCCCchhHHHHHHhcC----CCCCccEEEECCE-EEeccHHHHhHHHc
Q 034075 17 IFSKSSCCICHSIKTLFCDFGV--NPAVYELDEMPGGRELEQDLQRLG----CSPAVPAVFIGGE-LVGGANQVMSLHLN 89 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L~~~~v--~~~~~~vd~~~~~~~~~~~l~~~~----~~~tvP~ifi~g~-~igg~~~~~~~~~~ 89 (104)
||....||+|.....++..... .+..+++...++.. .+...+ ...+.-.+.-+|+ ...|.+-+..+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQA----LLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhh----HHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHHH
Confidence 4677899999999999988864 46777774333211 111111 0123333334776 88999988777665
Q ss_pred CC
Q 034075 90 RS 91 (104)
Q Consensus 90 g~ 91 (104)
-.
T Consensus 77 ~~ 78 (114)
T PF04134_consen 77 LP 78 (114)
T ss_pred cC
Confidence 33
No 248
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.20 E-value=0.018 Score=33.00 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.1
Q ss_pred EEcCCChhHHHHHHHHHhc
Q 034075 18 FSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 18 f~~~~Cp~C~~~~~~L~~~ 36 (104)
|+++|||+|+.+...|.+.
T Consensus 39 f~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EEcCcCHHHHhhchhHHHH
Confidence 3699999999999888654
No 249
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=95.10 E-value=0.02 Score=36.59 Aligned_cols=24 Identities=17% Similarity=0.371 Sum_probs=19.7
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHh
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCD 35 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~ 35 (104)
...|+.|+...||+|.++.+.+.+
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~ 39 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEA 39 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHH
Confidence 346889999999999988887743
No 250
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=95.03 E-value=0.11 Score=31.12 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=28.9
Q ss_pred EEEEEcC-CChhHHHHHHHHHhc----C-CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 15 VVIFSKS-SCCICHSIKTLFCDF----G-VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 15 v~vf~~~-~Cp~C~~~~~~L~~~----~-v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
++.|+.+ |||+|.....-|.+. . -.+.++-|..++. .++++.++... ..+|.+.-
T Consensus 29 vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~-~~~~~~~~~~~--~~~~~~~D 89 (124)
T PF00578_consen 29 VLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP-EEIKQFLEEYG--LPFPVLSD 89 (124)
T ss_dssp EEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH-HHHHHHHHHHT--CSSEEEEE
T ss_pred EEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc-cchhhhhhhhc--cccccccC
Confidence 5566666 999998666555332 2 2344555544322 23444444433 45555543
No 251
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=95.03 E-value=0.11 Score=33.31 Aligned_cols=21 Identities=24% Similarity=0.361 Sum_probs=15.4
Q ss_pred CEEEEEcCCChhHHHHHHHHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFC 34 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~ 34 (104)
.++.|+.+|||.|.+...-|.
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~ 48 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLN 48 (171)
T ss_pred EEEEEECCCCccHHHHHHHHH
Confidence 367788899999986555543
No 252
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=94.99 E-value=0.021 Score=39.86 Aligned_cols=74 Identities=16% Similarity=0.358 Sum_probs=60.5
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLN 89 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~ 89 (104)
.++|.-|..-+..+++-.+.++|++|+..+|+- +.++.....+-+.+....+|++.-+...|-.+.+++++.++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l-~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSL-PQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccC-ccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHH
Confidence 789999999999999999999999999999974 33333334455556668999988888889999999998887
No 253
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=94.80 E-value=0.069 Score=35.08 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=19.2
Q ss_pred CEEEEE--cCCChhHHHHHHHH-------HhcCCCcEEEEee
Q 034075 14 PVVIFS--KSSCCICHSIKTLF-------CDFGVNPAVYELD 46 (104)
Q Consensus 14 ~v~vf~--~~~Cp~C~~~~~~L-------~~~~v~~~~~~vd 46 (104)
.+++|+ ..|||.|..-...| .+.|+.+--+.+|
T Consensus 33 ~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 33 WSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred EEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 454444 68999999754444 3345554444443
No 254
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.80 E-value=0.08 Score=32.44 Aligned_cols=20 Identities=25% Similarity=0.379 Sum_probs=13.8
Q ss_pred EEEEE-cCCChhHHHHHHHHH
Q 034075 15 VVIFS-KSSCCICHSIKTLFC 34 (104)
Q Consensus 15 v~vf~-~~~Cp~C~~~~~~L~ 34 (104)
+++|+ ..|||.|......|.
T Consensus 26 ll~f~~~~~c~~C~~~~~~l~ 46 (140)
T cd02971 26 VLFFYPKDFTPVCTTELCAFR 46 (140)
T ss_pred EEEEeCCCCCCcCHHHHHHHH
Confidence 44555 579999997655553
No 255
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=94.63 E-value=0.2 Score=30.92 Aligned_cols=21 Identities=24% Similarity=0.529 Sum_probs=14.7
Q ss_pred EEEE-EcCCChhHHHHHHHHHh
Q 034075 15 VVIF-SKSSCCICHSIKTLFCD 35 (104)
Q Consensus 15 v~vf-~~~~Cp~C~~~~~~L~~ 35 (104)
+++| ..+|||.|.+-...|.+
T Consensus 27 vl~f~~~~~Cp~C~~~~~~l~~ 48 (149)
T cd02970 27 VVVFYRGFGCPFCREYLRALSK 48 (149)
T ss_pred EEEEECCCCChhHHHHHHHHHH
Confidence 4444 47899999986666644
No 256
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=94.47 E-value=0.15 Score=31.30 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=12.4
Q ss_pred EEEEE-cCCChhHHHHHHHH
Q 034075 15 VVIFS-KSSCCICHSIKTLF 33 (104)
Q Consensus 15 v~vf~-~~~Cp~C~~~~~~L 33 (104)
++.|+ +.|||.|......|
T Consensus 27 ll~f~~~~~cp~C~~~~~~l 46 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDF 46 (140)
T ss_pred EEEEeCCCCCCchHHHHHHH
Confidence 44455 57999998654444
No 257
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.37 E-value=0.11 Score=32.33 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=14.2
Q ss_pred EEEEE-cCCChhHHHHHHHHHh
Q 034075 15 VVIFS-KSSCCICHSIKTLFCD 35 (104)
Q Consensus 15 v~vf~-~~~Cp~C~~~~~~L~~ 35 (104)
+++|+ .+|||.|.+....|.+
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHH
Confidence 44455 7899999966555543
No 258
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.37 E-value=0.059 Score=33.83 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=22.0
Q ss_pred CEEEEEcCCChhHHHHHHHH----Hhc----CCCcEEEEe
Q 034075 14 PVVIFSKSSCCICHSIKTLF----CDF----GVNPAVYEL 45 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L----~~~----~v~~~~~~v 45 (104)
.|++|+...||+|.++-..+ +++ .+.+..+.+
T Consensus 15 ~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 15 TVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred EEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 48899999999999876555 443 355555555
No 259
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=94.25 E-value=0.095 Score=36.05 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=39.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEE----eec-----------CCCchhHHHHHHhcC--CCCCccEEEECCE-E
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYE----LDE-----------MPGGRELEQDLQRLG--CSPAVPAVFIGGE-L 76 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~----vd~-----------~~~~~~~~~~l~~~~--~~~tvP~ifi~g~-~ 76 (104)
|.+|++.+|..|..+-+.|.++.-+..++- ||- ..+.-+-|..+.+.. ....+|+.++||+ +
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvnGr~~ 124 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVNGRVH 124 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheeechhh
Confidence 679999999999999999988754433321 111 111111223333322 2267899999997 3
Q ss_pred Eecc
Q 034075 77 VGGA 80 (104)
Q Consensus 77 igg~ 80 (104)
+.|.
T Consensus 125 ~~Ga 128 (261)
T COG5429 125 ANGA 128 (261)
T ss_pred hcCC
Confidence 4444
No 260
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=94.13 E-value=0.13 Score=33.19 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=14.1
Q ss_pred CEEE-EE-cCCChhHHHHHHHHH
Q 034075 14 PVVI-FS-KSSCCICHSIKTLFC 34 (104)
Q Consensus 14 ~v~v-f~-~~~Cp~C~~~~~~L~ 34 (104)
.+++ |+ .+|||.|......|.
T Consensus 31 ~vvl~F~~~~~c~~C~~~l~~l~ 53 (173)
T cd03015 31 WVVLFFYPLDFTFVCPTEIIAFS 53 (173)
T ss_pred EEEEEEECCCCCCcCHHHHHHHH
Confidence 3444 44 689999997666653
No 261
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=93.97 E-value=0.016 Score=39.68 Aligned_cols=63 Identities=22% Similarity=0.421 Sum_probs=42.4
Q ss_pred HHHhcCCCEEEEEcCCChhHHHHHHHHHhc-------CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE--ECCEE
Q 034075 7 AKMASERPVVIFSKSSCCICHSIKTLFCDF-------GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF--IGGEL 76 (104)
Q Consensus 7 ~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~-------~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if--i~g~~ 76 (104)
..+....-.+.|..||||.|......|... +|..-++|+..++- |.-..-....|+|+ .+|.|
T Consensus 35 ~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-------LsGRF~vtaLptIYHvkDGeF 106 (248)
T KOG0913|consen 35 KELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-------LSGRFLVTALPTIYHVKDGEF 106 (248)
T ss_pred hhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-------cceeeEEEecceEEEeecccc
Confidence 344444457789999999999999998654 55566788877664 21111126788885 57754
No 262
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.12 Score=37.50 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=34.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcC------CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCEE
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFG------VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGEL 76 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~------v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~ 76 (104)
..++.|..|||++|++....+.+.. ..+.+..+|... . ..+....+...+|++ |-+|..
T Consensus 164 ~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~-~----~~~~~~~~v~~~Pt~~~f~~~~~ 230 (383)
T KOG0191|consen 164 DWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV-H----KSLASRLEVRGYPTLKLFPPGEE 230 (383)
T ss_pred ceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch-H----HHHhhhhcccCCceEEEecCCCc
Confidence 3488999999999998877665443 344455555331 1 123333334556655 444444
No 263
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.30 E-value=0.27 Score=36.94 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=48.8
Q ss_pred cCCChhHHHHHHHHHhc--CC-CcEEEEeecCCCchh--HHHHHHhcC-CCCCccEEEE-------CCEEEeccHHHHhH
Q 034075 20 KSSCCICHSIKTLFCDF--GV-NPAVYELDEMPGGRE--LEQDLQRLG-CSPAVPAVFI-------GGELVGGANQVMSL 86 (104)
Q Consensus 20 ~~~Cp~C~~~~~~L~~~--~v-~~~~~~vd~~~~~~~--~~~~l~~~~-~~~tvP~ifi-------~g~~igg~~~~~~~ 86 (104)
+.+|||=.++.-+-+.+ ++ +|.+..|-++|+..+ +++..+..+ .+..-|.|.- .|..+||++|++++
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~~~spiiwrel~~rggkg~l~gg~~~f~e~ 80 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSHKRSPIIWRELLDRGGKGLLLGGCNEFLEY 80 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCccCCCCeeHHHHHhcCCCceEecChHHHHHH
Confidence 36899999998877665 44 388999988887554 333333321 2467888853 67899999999887
Q ss_pred HH
Q 034075 87 HL 88 (104)
Q Consensus 87 ~~ 88 (104)
.+
T Consensus 81 ~~ 82 (452)
T cd05295 81 AE 82 (452)
T ss_pred HH
Confidence 54
No 264
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=93.04 E-value=0.16 Score=33.76 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=18.8
Q ss_pred EEEcCCChhHHHHHHHH-------HhcCCCcEEEEee
Q 034075 17 IFSKSSCCICHSIKTLF-------CDFGVNPAVYELD 46 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L-------~~~~v~~~~~~vd 46 (104)
.|..+|||.|..-...| ++.|+.+--+.+|
T Consensus 32 ~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D 68 (203)
T cd03016 32 SHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD 68 (203)
T ss_pred EecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 36668999998654444 4456655555554
No 265
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.92 E-value=1.2 Score=30.09 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=53.3
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
...++.-+....|.-++.+|.-.|++|+...+....... .++....-..+|++-|||..+...-.+..+.
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~----~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWE----ELKDKMPFGQLPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchh----hhcccCCCCCCCEEeECCEeeccHHHHHHHH
Confidence 345666678889999999999999999999998655322 2333355678999999999888776665543
No 266
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=92.89 E-value=0.052 Score=41.55 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=39.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCC----cEEEEeecCCCchhHHHHHHhcCCCCCccEEEE------C---CEEEecc
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVN----PAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI------G---GELVGGA 80 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~----~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi------~---g~~igg~ 80 (104)
.+|=|..+||++|++....+++.... ..++-|-.-+-..+.-..+.+..+.+.+|+++- + |..+.|.
T Consensus 60 ~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~~~~~~G~~~~~~ 139 (606)
T KOG1731|consen 60 KLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDSQNKTDGSDVSGP 139 (606)
T ss_pred HHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCccccCcCCCcccCC
Confidence 36678889999999999999876533 122222211111111134555556688998853 2 5667663
No 267
>PRK13599 putative peroxiredoxin; Provisional
Probab=92.85 E-value=0.19 Score=33.96 Aligned_cols=30 Identities=10% Similarity=0.110 Sum_probs=17.4
Q ss_pred EEEcCCChhHHHHHHH-------HHhcCCCcEEEEee
Q 034075 17 IFSKSSCCICHSIKTL-------FCDFGVNPAVYELD 46 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~-------L~~~~v~~~~~~vd 46 (104)
.|...|||.|..-... +.+.|+..--+.+|
T Consensus 35 ~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D 71 (215)
T PRK13599 35 SHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD 71 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4566899999863333 34445544444444
No 268
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.56 E-value=0.33 Score=37.11 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=32.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcC-----CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFG-----VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~-----v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
.+.+|+.+.|++|..++.+|++.. ++++.+|...+.+ +.+..+...+|.+.+
T Consensus 369 ~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~-------~~~~~~v~~~P~~~i 425 (555)
T TIGR03143 369 TLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPE-------SETLPKITKLPTVAL 425 (555)
T ss_pred EEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchh-------hHhhcCCCcCCEEEE
Confidence 366788899999999999997753 3344444332221 222233467788865
No 269
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=92.56 E-value=0.72 Score=27.86 Aligned_cols=74 Identities=22% Similarity=0.349 Sum_probs=41.2
Q ss_pred HHHHHHHhcC---CCEEEEEc-CCChhHHHHHHHHHhc------CCCcEEEEeecCCCchhHHHHHHhc-CCCCCccEEE
Q 034075 3 MERVAKMASE---RPVVIFSK-SSCCICHSIKTLFCDF------GVNPAVYELDEMPGGRELEQDLQRL-GCSPAVPAVF 71 (104)
Q Consensus 3 ~~~~~~~~~~---~~v~vf~~-~~Cp~C~~~~~~L~~~------~v~~~~~~vd~~~~~~~~~~~l~~~-~~~~tvP~if 71 (104)
.+.+++++.. .++++|=- +.||-...+.+-|++. .+++.+++|-...+ +-.++++. +-.-.-|+++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~---vSn~IAe~~~V~HeSPQ~i 83 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRP---VSNAIAEDFGVKHESPQVI 83 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHH---HHHHHHHHHT----SSEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCch---hHHHHHHHhCCCcCCCcEE
Confidence 3556666654 34666655 4599999988887543 27888888864433 33444443 4445677774
Q ss_pred --ECCEEEec
Q 034075 72 --IGGELVGG 79 (104)
Q Consensus 72 --i~g~~igg 79 (104)
-||+.+-.
T Consensus 84 li~~g~~v~~ 93 (105)
T PF11009_consen 84 LIKNGKVVWH 93 (105)
T ss_dssp EEETTEEEEE
T ss_pred EEECCEEEEE
Confidence 58887643
No 270
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=92.26 E-value=0.65 Score=30.03 Aligned_cols=74 Identities=9% Similarity=0.162 Sum_probs=51.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhc----------------------CCCCCccEEE-
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRL----------------------GCSPAVPAVF- 71 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~----------------------~~~~tvP~if- 71 (104)
|++=++++=|++.++..+|+++|++|+..-.+.+.....+.+++++. .+..++|+|=
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVIgv 82 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVIGV 82 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEEEe
Confidence 34445678899999999999999998877777666555555554321 2346677763
Q ss_pred -ECCEEEeccHHHHhHHH
Q 034075 72 -IGGELVGGANQVMSLHL 88 (104)
Q Consensus 72 -i~g~~igg~~~~~~~~~ 88 (104)
+.....+|.|.+..+.+
T Consensus 83 P~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 83 PVPSKALSGLDSLLSIVQ 100 (156)
T ss_pred cCCccCCCCHHHHHHHhc
Confidence 34556788887777766
No 271
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=91.95 E-value=0.31 Score=31.46 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=20.4
Q ss_pred CCCCCccEEEECCEEEeccHHHHhH
Q 034075 62 GCSPAVPAVFIGGELVGGANQVMSL 86 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~igg~~~~~~~ 86 (104)
.|..++|+++|||+.+-|.+.+..+
T Consensus 163 ~gi~gvPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 163 RGVFGVPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred cCCCcCCeEEECCeeecccccHHHH
Confidence 4668999999999999888866443
No 272
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=91.74 E-value=0.61 Score=31.93 Aligned_cols=81 Identities=15% Similarity=0.292 Sum_probs=52.7
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEE---eecCCCchhHHHHHHhcCCCCCccEE--EECCEEEeccHH----HHhH
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYE---LDEMPGGRELEQDLQRLGCSPAVPAV--FIGGELVGGANQ----VMSL 86 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~---vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~~igg~~~----~~~~ 86 (104)
|..+-++-+-|..+...+.=+..+|..+. +.....+ .-.++ + ...+|++ +-||+.||+|-. +-+-
T Consensus 164 VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~g--as~~F---~-~n~lP~LliYkgGeLIgNFv~va~qlged 237 (273)
T KOG3171|consen 164 VHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTG--ASDRF---S-LNVLPTLLIYKGGELIGNFVSVAEQLGED 237 (273)
T ss_pred EEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecccc--chhhh---c-ccCCceEEEeeCCchhHHHHHHHHHHhhh
Confidence 33455788888888888877766665443 3322211 11122 2 2567765 669999999964 4455
Q ss_pred HHcCCcHHHHhhcCCc
Q 034075 87 HLNRSLIPMLKRVGAI 102 (104)
Q Consensus 87 ~~~g~L~~~L~~~g~~ 102 (104)
+-.|+|.+.|++-|++
T Consensus 238 ffa~dle~FL~e~gll 253 (273)
T KOG3171|consen 238 FFAGDLESFLNEYGLL 253 (273)
T ss_pred hhhhhHHHHHHHcCCC
Confidence 6779999999999885
No 273
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=91.68 E-value=1 Score=28.22 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=11.3
Q ss_pred CCCEE-EEEc-CCChhHHHHHH
Q 034075 12 ERPVV-IFSK-SSCCICHSIKT 31 (104)
Q Consensus 12 ~~~v~-vf~~-~~Cp~C~~~~~ 31 (104)
...++ .|+. .|||.|.....
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~ 51 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQAC 51 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHH
Confidence 33444 4443 47999975433
No 274
>PRK13189 peroxiredoxin; Provisional
Probab=91.66 E-value=0.33 Score=32.88 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=17.4
Q ss_pred EEEcCCChhHHHHHHH-------HHhcCCCcEEEEee
Q 034075 17 IFSKSSCCICHSIKTL-------FCDFGVNPAVYELD 46 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~-------L~~~~v~~~~~~vd 46 (104)
.|..+|||.|..-... +++.|+..--+.+|
T Consensus 42 f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D 78 (222)
T PRK13189 42 SHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID 78 (222)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC
Confidence 3567899999863333 34445554444444
No 275
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=91.57 E-value=0.25 Score=30.93 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=17.4
Q ss_pred CCCCCccEEEECCEEEeccHHHH
Q 034075 62 GCSPAVPAVFIGGELVGGANQVM 84 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~igg~~~~~ 84 (104)
.+..++|+++|||+.+.|..++.
T Consensus 132 ~~i~~tPt~~inG~~~~~~~~~~ 154 (162)
T PF13462_consen 132 LGITGTPTFFINGKYVVGPYTIE 154 (162)
T ss_dssp HT-SSSSEEEETTCEEETTTSHH
T ss_pred cCCccccEEEECCEEeCCCCCHH
Confidence 45689999999999998654443
No 276
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=91.49 E-value=0.84 Score=30.10 Aligned_cols=60 Identities=12% Similarity=0.182 Sum_probs=31.4
Q ss_pred EEEEEcCCChhHHHHHH---HHHhcC-CCcEEEEe--ec----C-CCchhHHHHHHhcCCCCCccEE---EECCE
Q 034075 15 VVIFSKSSCCICHSIKT---LFCDFG-VNPAVYEL--DE----M-PGGRELEQDLQRLGCSPAVPAV---FIGGE 75 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~---~L~~~~-v~~~~~~v--d~----~-~~~~~~~~~l~~~~~~~tvP~i---fi~g~ 75 (104)
+++|+++||++|..... +.++++ -.+.++=+ ++ . .+..++++.++...+ .++|.+ -++|.
T Consensus 29 LVvf~AS~C~~~~q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g-~~Fpv~~k~dvnG~ 102 (183)
T PRK10606 29 LIVNVASKCGLTPQYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWG-VTFPMFSKIEVNGE 102 (183)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHHccC-CCceeEEEEccCCC
Confidence 67899999999975332 223332 22444443 32 1 122335554442333 578865 26665
No 277
>PRK13190 putative peroxiredoxin; Provisional
Probab=91.21 E-value=0.36 Score=32.12 Aligned_cols=16 Identities=13% Similarity=0.189 Sum_probs=11.8
Q ss_pred EEcCCChhHHHHHHHH
Q 034075 18 FSKSSCCICHSIKTLF 33 (104)
Q Consensus 18 f~~~~Cp~C~~~~~~L 33 (104)
|..+|||.|..-...|
T Consensus 35 ~p~~~cp~C~~El~~l 50 (202)
T PRK13190 35 HPADFTPVCTTEFIAF 50 (202)
T ss_pred EcCCCCCCCHHHHHHH
Confidence 6778999998654444
No 278
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=91.20 E-value=0.41 Score=31.64 Aligned_cols=20 Identities=15% Similarity=0.081 Sum_probs=12.7
Q ss_pred CEEEE-E-cCCChhHHHHHHHH
Q 034075 14 PVVIF-S-KSSCCICHSIKTLF 33 (104)
Q Consensus 14 ~v~vf-~-~~~Cp~C~~~~~~L 33 (104)
.+++| + ..|||.|..-...|
T Consensus 33 ~vvL~F~P~~~~p~C~~el~~l 54 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTELGDV 54 (187)
T ss_pred eEEEEEECCCCCCcCHHHHHHH
Confidence 44444 4 68999998744333
No 279
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=91.11 E-value=1.5 Score=29.47 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=34.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHH
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDL 58 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l 58 (104)
..+.+|.+..||.|......+..-+-++.+.-|++..+...++.-.
T Consensus 110 ~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~Ir~WA 155 (200)
T TIGR03759 110 GRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDERIRQWA 155 (200)
T ss_pred CeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHHHHHHH
Confidence 3589999999999999888887777788877777544444444433
No 280
>PRK15000 peroxidase; Provisional
Probab=90.98 E-value=0.68 Score=30.84 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=13.9
Q ss_pred CCCEEEEEcC--CChhHHHHHHHH
Q 034075 12 ERPVVIFSKS--SCCICHSIKTLF 33 (104)
Q Consensus 12 ~~~v~vf~~~--~Cp~C~~~~~~L 33 (104)
...+++|+.+ |||.|..-..-|
T Consensus 34 gk~vvL~F~p~~~t~vC~~El~~l 57 (200)
T PRK15000 34 GKTTVLFFWPMDFTFVCPSELIAF 57 (200)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHH
Confidence 3445555554 799999754444
No 281
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=90.75 E-value=0.56 Score=28.94 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=14.1
Q ss_pred EEEEEcCC-ChhHHHHHHHHH
Q 034075 15 VVIFSKSS-CCICHSIKTLFC 34 (104)
Q Consensus 15 v~vf~~~~-Cp~C~~~~~~L~ 34 (104)
|+.|+.+| ||.|.+-...|.
T Consensus 30 vl~f~~~~~c~~C~~e~~~l~ 50 (143)
T cd03014 30 VISVFPSIDTPVCATQTKRFN 50 (143)
T ss_pred EEEEEcCCCCCcCHHHHHHHH
Confidence 45566666 799998776664
No 282
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=90.68 E-value=1.7 Score=29.21 Aligned_cols=95 Identities=18% Similarity=0.214 Sum_probs=55.2
Q ss_pred HHHHHHHhcCCCEEE-EEcCC---ChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECCE-
Q 034075 3 MERVAKMASERPVVI-FSKSS---CCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGGE- 75 (104)
Q Consensus 3 ~~~~~~~~~~~~v~v-f~~~~---Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g~- 75 (104)
+++++...++.+|++ |..+. |-.-.+=..+|....+...++.|+.... ..|...-+...+|++ |.||.
T Consensus 75 kdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~-----PFlv~kL~IkVLP~v~l~k~g~~ 149 (211)
T KOG1672|consen 75 KDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKA-----PFLVTKLNIKVLPTVALFKNGKT 149 (211)
T ss_pred HHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccC-----ceeeeeeeeeEeeeEEEEEcCEE
Confidence 456666667777654 77776 5555566667777777766666653222 134333445788877 78986
Q ss_pred --EEeccHHHHh--HHHcCCcHHHHhhcCCc
Q 034075 76 --LVGGANQVMS--LHLNRSLIPMLKRVGAI 102 (104)
Q Consensus 76 --~igg~~~~~~--~~~~g~L~~~L~~~g~~ 102 (104)
++.||++|=. =+.-..|+..|...|++
T Consensus 150 ~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 150 VDYVVGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred EEEEeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 4577765411 11122355556555543
No 283
>PRK13191 putative peroxiredoxin; Provisional
Probab=90.61 E-value=0.47 Score=32.01 Aligned_cols=31 Identities=10% Similarity=0.065 Sum_probs=19.0
Q ss_pred EEEcCCChhHHHHHHHH-------HhcCCCcEEEEeec
Q 034075 17 IFSKSSCCICHSIKTLF-------CDFGVNPAVYELDE 47 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L-------~~~~v~~~~~~vd~ 47 (104)
.|..+|||.|..-...| .+.|+.+--+.+|.
T Consensus 40 f~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds 77 (215)
T PRK13191 40 SHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDS 77 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45678999998754444 34455544444443
No 284
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=90.43 E-value=1.1 Score=28.11 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=39.9
Q ss_pred HHHHHHhcCC--C--EEEEEcCCChhHHHHHHHHHhcCC------CcEEEEeecCCCchhHHHHHHhcCCCCCccE--EE
Q 034075 4 ERVAKMASER--P--VVIFSKSSCCICHSIKTLFCDFGV------NPAVYELDEMPGGRELEQDLQRLGCSPAVPA--VF 71 (104)
Q Consensus 4 ~~~~~~~~~~--~--v~vf~~~~Cp~C~~~~~~L~~~~v------~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~--if 71 (104)
..+.+.+.+. + |+=|+..|-|-|.+.-.+|.+... ..-.+|+|+-++ +.++.+....|+ .|
T Consensus 12 ~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~-------~~~~~~l~~p~tvmfF 84 (142)
T KOG3414|consen 12 WEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPD-------FVKMYELYDPPTVMFF 84 (142)
T ss_pred HHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhh-------hhhhhcccCCceEEEE
Confidence 4455555443 3 344999999999999999976532 233456664443 233333344444 37
Q ss_pred ECCEEE
Q 034075 72 IGGELV 77 (104)
Q Consensus 72 i~g~~i 77 (104)
.|++++
T Consensus 85 fn~kHm 90 (142)
T KOG3414|consen 85 FNNKHM 90 (142)
T ss_pred EcCceE
Confidence 777765
No 285
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=90.07 E-value=0.32 Score=31.41 Aligned_cols=33 Identities=12% Similarity=0.223 Sum_probs=23.7
Q ss_pred CEEEEEcCCChhHHHHHHHH----Hhc-CCCcEEEEee
Q 034075 14 PVVIFSKSSCCICHSIKTLF----CDF-GVNPAVYELD 46 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L----~~~-~v~~~~~~vd 46 (104)
+|++|+...||||-.+...| .++ +++++..-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccc
Confidence 37899999999998776665 444 6666655443
No 286
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=89.56 E-value=3.8 Score=25.97 Aligned_cols=72 Identities=17% Similarity=0.335 Sum_probs=43.0
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhcCCC--cEEEEeecCCCchhHHHHHHhcCCCCCcc---EEEECCEEEeccHHHHh
Q 034075 11 SERPVVIFSKSSCCICHSIKTLFCDFGVN--PAVYELDEMPGGRELEQDLQRLGCSPAVP---AVFIGGELVGGANQVMS 85 (104)
Q Consensus 11 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~--~~~~~vd~~~~~~~~~~~l~~~~~~~tvP---~ifi~g~~igg~~~~~~ 85 (104)
++...+|++...||.|.....+|.+..-. +....+...+. . ..+...+-.+.-+ .+.-+|+...|.+-+.+
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g-~---~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~ 81 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPG-Q---ALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIR 81 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchh-h---hHHhhcCCChhhhheeeEecCCceEeccHHHHH
Confidence 44567888889999999999999777544 55555543222 2 2233332222212 22346777888876555
Q ss_pred H
Q 034075 86 L 86 (104)
Q Consensus 86 ~ 86 (104)
.
T Consensus 82 i 82 (137)
T COG3011 82 I 82 (137)
T ss_pred H
Confidence 4
No 287
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=89.39 E-value=2.7 Score=26.37 Aligned_cols=70 Identities=16% Similarity=0.103 Sum_probs=39.0
Q ss_pred HHHHhcCCC-EEEEEcC---CChhHHHHHHHHHhc----C-CCcEEEEeecCCCchhHHHHHHhcCCCCCccEE--EECC
Q 034075 6 VAKMASERP-VVIFSKS---SCCICHSIKTLFCDF----G-VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAV--FIGG 74 (104)
Q Consensus 6 ~~~~~~~~~-v~vf~~~---~Cp~C~~~~~~L~~~----~-v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~i--fi~g 74 (104)
+...+.... .++|... .+|.+..+--+|.+. + -++.+..+|.+.+ ..++...+..++|++ |-||
T Consensus 27 ~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-----~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 27 LDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-----EAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred HHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-----HHHHHHcCCccCCEEEEEECC
Confidence 334444443 4455542 477777666666433 3 2233444443333 245556677899987 6799
Q ss_pred EEEecc
Q 034075 75 ELVGGA 80 (104)
Q Consensus 75 ~~igg~ 80 (104)
+.++-.
T Consensus 102 k~v~~i 107 (132)
T PRK11509 102 NYRGVL 107 (132)
T ss_pred EEEEEE
Confidence 988654
No 288
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=88.95 E-value=0.77 Score=28.21 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=20.0
Q ss_pred CCCCCccEEEECCEEEeccHHHHhH
Q 034075 62 GCSPAVPAVFIGGELVGGANQVMSL 86 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~igg~~~~~~~ 86 (104)
.+..++|++++||+.+.|..+...+
T Consensus 125 ~gi~gtPt~~v~g~~~~G~~~~~~l 149 (154)
T cd03023 125 LGITGTPAFIIGDTVIPGAVPADTL 149 (154)
T ss_pred cCCCcCCeEEECCEEecCCCCHHHH
Confidence 4568999999999999998765443
No 289
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=88.71 E-value=0.28 Score=32.68 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=16.6
Q ss_pred CCEEEEEcCCChhHHHHHHH
Q 034075 13 RPVVIFSKSSCCICHSIKTL 32 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~ 32 (104)
..|+-|+.-.||+|.+..+.
T Consensus 39 ~~VvEffdy~CphC~~~~~~ 58 (207)
T PRK10954 39 PQVLEFFSFYCPHCYQFEEV 58 (207)
T ss_pred CeEEEEeCCCCccHHHhccc
Confidence 45899999999999986643
No 290
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=88.20 E-value=1.3 Score=28.40 Aligned_cols=34 Identities=18% Similarity=0.119 Sum_probs=20.5
Q ss_pred EEEEEcCC-ChhHHHHHHHHHhcC---CCcEEEEeecC
Q 034075 15 VVIFSKSS-CCICHSIKTLFCDFG---VNPAVYELDEM 48 (104)
Q Consensus 15 v~vf~~~~-Cp~C~~~~~~L~~~~---v~~~~~~vd~~ 48 (104)
|+.|+.+| ||.|.+-..-|.+.. -.+.++-|+.+
T Consensus 48 vl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D 85 (167)
T PRK00522 48 VLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISAD 85 (167)
T ss_pred EEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 56677777 999997666554321 13455555433
No 291
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=88.16 E-value=4 Score=24.48 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=37.7
Q ss_pred HHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCcc-EEEEC--CEEE
Q 034075 6 VAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVP-AVFIG--GELV 77 (104)
Q Consensus 6 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP-~ifi~--g~~i 77 (104)
++++.+...+.+++-+....=..+++++++++++|..+.+|.... +....+...+| +++++ |+.+
T Consensus 47 l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~-------~~~~~~v~~~P~~~~ld~~G~v~ 114 (127)
T cd03010 47 LMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR-------VGIDLGVYGVPETFLIDGDGIIR 114 (127)
T ss_pred HHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch-------HHHhcCCCCCCeEEEECCCceEE
Confidence 333333334555544433444577888999999987776664322 33334557899 55664 5533
No 292
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.34 E-value=0.5 Score=32.43 Aligned_cols=70 Identities=13% Similarity=0.205 Sum_probs=45.3
Q ss_pred HHHHhcCCC----EEEEEcCCChhHHHHHHHHHhcCCC-------cEEEEeecCCCchhHHHH-HHhcCCCCCccEE--E
Q 034075 6 VAKMASERP----VVIFSKSSCCICHSIKTLFCDFGVN-------PAVYELDEMPGGRELEQD-LQRLGCSPAVPAV--F 71 (104)
Q Consensus 6 ~~~~~~~~~----v~vf~~~~Cp~C~~~~~~L~~~~v~-------~~~~~vd~~~~~~~~~~~-l~~~~~~~tvP~i--f 71 (104)
+.+..+.++ ++-|.+.|.|.|.+..+.+.++.++ |-.+|+..-++..+ +. +.-.++.+.+|++ |
T Consensus 135 ~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~--kfris~s~~srQLPT~ilF 212 (265)
T KOG0914|consen 135 EDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAA--KFRISLSPGSRQLPTYILF 212 (265)
T ss_pred HHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHH--heeeccCcccccCCeEEEE
Confidence 344455554 6678889999999999999877655 45678877665332 11 1122556788876 5
Q ss_pred ECCEEE
Q 034075 72 IGGELV 77 (104)
Q Consensus 72 i~g~~i 77 (104)
-+|+.+
T Consensus 213 q~gkE~ 218 (265)
T KOG0914|consen 213 QKGKEV 218 (265)
T ss_pred ccchhh
Confidence 577644
No 293
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=87.08 E-value=2.9 Score=25.87 Aligned_cols=48 Identities=17% Similarity=0.406 Sum_probs=31.1
Q ss_pred CChhHH-----------HHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 22 SCCICH-----------SIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 22 ~Cp~C~-----------~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
+|+-|. .++..|...|+...+..+...++ .++... -.-|.|-|||+.+
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~------~~~~~~--~~S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE------EFARQP--LESPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH------HHhhcc--cCCCeeeECCEeh
Confidence 788886 45555677788766555543332 222222 6789999999976
No 294
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=85.60 E-value=2 Score=28.38 Aligned_cols=27 Identities=11% Similarity=0.250 Sum_probs=15.6
Q ss_pred CCChhHHHHHHHH-------HhcCCCcEEEEeec
Q 034075 21 SSCCICHSIKTLF-------CDFGVNPAVYELDE 47 (104)
Q Consensus 21 ~~Cp~C~~~~~~L-------~~~~v~~~~~~vd~ 47 (104)
.+||.|.....-| .+.|+.+.-+.+|.
T Consensus 47 ~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~ 80 (199)
T PTZ00253 47 DFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDS 80 (199)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCC
Confidence 5788887543333 44466665565553
No 295
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=85.38 E-value=4.5 Score=26.19 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=49.8
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhc------------C----------CCCCccEE--
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRL------------G----------CSPAVPAV-- 70 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~------------~----------~~~tvP~i-- 70 (104)
|+|=+++.-+.-+++..+|++.|++|+..-++.+...+.+.++.++. + ...++|+|
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGV 86 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGV 86 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEec
Confidence 44556677888999999999999999998888776655544444321 1 12456666
Q ss_pred EECCEEEeccHHHHhH
Q 034075 71 FIGGELVGGANQVMSL 86 (104)
Q Consensus 71 fi~g~~igg~~~~~~~ 86 (104)
-+..+.++|.|.+...
T Consensus 87 Pv~s~~L~GlDSL~Si 102 (162)
T COG0041 87 PVQSKALSGLDSLLSI 102 (162)
T ss_pred cCccccccchHHHHHH
Confidence 3577778888876544
No 296
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=85.23 E-value=2.8 Score=29.29 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=21.9
Q ss_pred HHHhcCCCEEEEE--cCCChhHHHHHHH-------HHhcCCCcEEEEee
Q 034075 7 AKMASERPVVIFS--KSSCCICHSIKTL-------FCDFGVNPAVYELD 46 (104)
Q Consensus 7 ~~~~~~~~v~vf~--~~~Cp~C~~~~~~-------L~~~~v~~~~~~vd 46 (104)
.+..+...+++|+ ..|||.|..-... +.+.|+.+--+.+|
T Consensus 93 sd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~D 141 (261)
T PTZ00137 93 SDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVD 141 (261)
T ss_pred HHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Confidence 3333444565553 5799999873333 34455554444444
No 297
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=84.83 E-value=0.64 Score=30.03 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=17.1
Q ss_pred CEEEEEcCCChhHHHHHHHHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFC 34 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~ 34 (104)
+|.+|+.+.||+|-.+.+.|+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 488999999999986666654
No 298
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.82 E-value=4.5 Score=27.26 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=22.1
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhc-----CCCcEEEEe
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDF-----GVNPAVYEL 45 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~-----~v~~~~~~v 45 (104)
..+++|....||+|.+.-.-+.+. ++.+..+++
T Consensus 86 v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~ 123 (244)
T COG1651 86 VTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREF 123 (244)
T ss_pred ceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEe
Confidence 457889999999997666666442 344555554
No 299
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=83.45 E-value=4.8 Score=24.98 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=30.1
Q ss_pred HHHHHHHh-cCCCEEEEEcCCChhHH------------HHHHHHHhcCCCcEEEEeec
Q 034075 3 MERVAKMA-SERPVVIFSKSSCCICH------------SIKTLFCDFGVNPAVYELDE 47 (104)
Q Consensus 3 ~~~~~~~~-~~~~v~vf~~~~Cp~C~------------~~~~~L~~~~v~~~~~~vd~ 47 (104)
.+.++++. ....|++.|......+. .+..+|++++++|..+.+-.
T Consensus 30 ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~k 87 (126)
T TIGR01689 30 IEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGK 87 (126)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCC
Confidence 34444442 33456666666555555 88999999999998777764
No 300
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=83.34 E-value=1.4 Score=29.36 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=16.7
Q ss_pred CCCCCccEEEECCEEEeccHH
Q 034075 62 GCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~igg~~~ 82 (104)
.+..++|+++|||+++-+...
T Consensus 163 ~gI~gtPtfiInGky~v~~~~ 183 (207)
T PRK10954 163 LQLRGVPAMFVNGKYMVNNQG 183 (207)
T ss_pred cCCCCCCEEEECCEEEEcccc
Confidence 456899999999999766443
No 301
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.19 E-value=0.78 Score=31.39 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=17.4
Q ss_pred CEEEEEcCCChhHHHHHHHHHhc
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
+|.+|+..-||+|---++.|++.
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka 29 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKA 29 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHH
Confidence 58899999999997655555443
No 302
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=81.32 E-value=3.4 Score=25.26 Aligned_cols=50 Identities=14% Similarity=0.332 Sum_probs=29.6
Q ss_pred CChhHHHHHHHHHhc-----CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE
Q 034075 22 SCCICHSIKTLFCDF-----GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 22 ~Cp~C~~~~~~L~~~-----~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
.||+|..+.-+|... .++.+.++... -...+-+.+.+ .+-+.|+++.++.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~R--PR~~vi~llGE--~~QslPvLVL~~~ 77 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPR--PRQAVIALLGE--ANQSLPVLVLADG 77 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCC--chHHHHHHhCh--hccCCCEEEeCCC
Confidence 599999999999765 33444444331 22223333322 2468999987653
No 303
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=81.23 E-value=2 Score=23.45 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=11.1
Q ss_pred EEECCEEEeccHH
Q 034075 70 VFIGGELVGGANQ 82 (104)
Q Consensus 70 ifi~g~~igg~~~ 82 (104)
+|+||.++|=.++
T Consensus 1 VFlNG~~iG~~~~ 13 (63)
T PF04566_consen 1 VFLNGVWIGIHSD 13 (63)
T ss_dssp EEETTEEEEEESS
T ss_pred CEECCEEEEEEcC
Confidence 7999999997764
No 304
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=80.92 E-value=2.7 Score=26.96 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=19.9
Q ss_pred CCCCCccEEEECCE-EEeccHHHHhH
Q 034075 62 GCSPAVPAVFIGGE-LVGGANQVMSL 86 (104)
Q Consensus 62 ~~~~tvP~ifi~g~-~igg~~~~~~~ 86 (104)
.|..++|+++|||+ .+-|.+.+..+
T Consensus 163 ~gv~GvP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 163 LGVFGVPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp TTCSSSSEEEETTTEEEESCSSHHHH
T ss_pred cCCcccCEEEECCEEEEECCCCHHHH
Confidence 55689999999999 78888765444
No 305
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=80.48 E-value=8.6 Score=30.49 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=39.1
Q ss_pred HHHHHhcCCC-EEE-EEcCCChhHHHHHHH-H------HhcCCCcEEEEeec--CCCchh-HHHHHHhcCCCCCccEE-E
Q 034075 5 RVAKMASERP-VVI-FSKSSCCICHSIKTL-F------CDFGVNPAVYELDE--MPGGRE-LEQDLQRLGCSPAVPAV-F 71 (104)
Q Consensus 5 ~~~~~~~~~~-v~v-f~~~~Cp~C~~~~~~-L------~~~~v~~~~~~vd~--~~~~~~-~~~~l~~~~~~~tvP~i-f 71 (104)
.+.+.-..++ |.+ .+.+||.+|+-+..- + .-+|-.|.-|.||. .|+-.+ ..+..+..+|+.+.|.. |
T Consensus 35 Af~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGWPLtVf 114 (667)
T COG1331 35 AFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGWPLTVF 114 (667)
T ss_pred HHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCCceeEE
Confidence 3444444444 332 445899999854321 1 22244566666664 344444 34444556777888844 4
Q ss_pred E--CCEEE
Q 034075 72 I--GGELV 77 (104)
Q Consensus 72 i--~g~~i 77 (104)
+ +|+++
T Consensus 115 LTPd~kPF 122 (667)
T COG1331 115 LTPDGKPF 122 (667)
T ss_pred ECCCCcee
Confidence 4 66644
No 306
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=80.26 E-value=1.7 Score=26.02 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=14.2
Q ss_pred CEEEEEcCCChhHHHH
Q 034075 14 PVVIFSKSSCCICHSI 29 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~ 29 (104)
+|.+|+.+-||+|++.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5889999999999974
No 307
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=79.02 E-value=7.3 Score=24.68 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=14.0
Q ss_pred HHhcCCCEEEEEcC--CChhHHHH
Q 034075 8 KMASERPVVIFSKS--SCCICHSI 29 (104)
Q Consensus 8 ~~~~~~~v~vf~~~--~Cp~C~~~ 29 (104)
+.....++++|+.| +||.|..-
T Consensus 25 ~~~~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 25 ELFKGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred HHhCCCcEEEEEeCCCCCCCCchh
Confidence 33334466666654 79999864
No 308
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=79.02 E-value=10 Score=22.68 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=23.1
Q ss_pred CChhHH-HHHHHHHhcCCCcEEEEeecC
Q 034075 22 SCCICH-SIKTLFCDFGVNPAVYELDEM 48 (104)
Q Consensus 22 ~Cp~C~-~~~~~L~~~~v~~~~~~vd~~ 48 (104)
.|-.|. .++++|.+.+|+.+.+.+...
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T~ 47 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYTG 47 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEec
Confidence 588886 567889999999999999874
No 309
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=79.00 E-value=15 Score=26.33 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCC---------CCCccEEEECCE---------------EEecc
Q 034075 25 ICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGC---------SPAVPAVFIGGE---------------LVGGA 80 (104)
Q Consensus 25 ~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~---------~~tvP~ifi~g~---------------~igg~ 80 (104)
+|.+++.+=+.++.+...+-..+.....+.++.|+++.. +.++|.+..+|. +-|.-
T Consensus 38 ~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~~~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~~~~~~~P~GhG 117 (300)
T cd00897 38 TVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYAGVNVDIHTFNQSRYPRISKETLLPVPSWADSPDEEWYPPGHG 117 (300)
T ss_pred HHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcCCCccCeEEEecCCcccCccccCccccccCCCcceeeccCCCc
Confidence 455555555666766666655555666666677766542 245665554332 12333
Q ss_pred HHHHhHHHcCCcHHHHhhcCCcc
Q 034075 81 NQVMSLHLNRSLIPMLKRVGAIW 103 (104)
Q Consensus 81 ~~~~~~~~~g~L~~~L~~~g~~~ 103 (104)
+-...++++|.|++++ +.|.-|
T Consensus 118 ~i~~aL~~sG~L~~l~-~~G~~y 139 (300)
T cd00897 118 DIFESLYNSGLLDTLL-AQGKEY 139 (300)
T ss_pred hHHHHHHHCCcHHHHH-hcCCEE
Confidence 4577888899888864 455544
No 310
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=78.92 E-value=2.3 Score=27.33 Aligned_cols=28 Identities=7% Similarity=-0.055 Sum_probs=20.0
Q ss_pred EEEEEcCCChhHHHHHHHHH----hcCCCcEE
Q 034075 15 VVIFSKSSCCICHSIKTLFC----DFGVNPAV 42 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~----~~~v~~~~ 42 (104)
|.+|+...||+|--....|+ +++++++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~ 32 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRY 32 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEE
Confidence 46899999999987766664 44555443
No 311
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=78.17 E-value=3.8 Score=25.91 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=16.4
Q ss_pred CCCCCccEEEECCEEEeccHH
Q 034075 62 GCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~igg~~~ 82 (104)
.+..++|+++|||+.+-+...
T Consensus 139 ~gi~gTPt~iInG~~~~~~~~ 159 (178)
T cd03019 139 YKITGVPAFVVNGKYVVNPSA 159 (178)
T ss_pred cCCCCCCeEEECCEEEEChhh
Confidence 456899999999998755443
No 312
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=75.75 E-value=7.7 Score=22.82 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhc
Q 034075 2 AMERVAKMASERPVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRL 61 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~ 61 (104)
|.+.++.+-+.++-++|.+ .....-....+.|.++|++...-++-. ......++|++.
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~t--s~~~~~~~l~~~ 77 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIIT--SGMAAAEYLKEH 77 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEE--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEC--hHHHHHHHHHhc
Confidence 5677888777766444444 444444677777899999865433321 122255667664
No 313
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.91 E-value=4.7 Score=27.19 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.3
Q ss_pred CCCCCccEEEECCEEEeccHHH
Q 034075 62 GCSPAVPAVFIGGELVGGANQV 83 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~igg~~~~ 83 (104)
.+...+|++|++|..++|.-.+
T Consensus 211 ~gv~gTPt~~v~~~~~~g~~~~ 232 (244)
T COG1651 211 LGVNGTPTFIVNGKLVPGLPDL 232 (244)
T ss_pred cCCCcCCeEEECCeeecCCCCH
Confidence 5578999999999988887653
No 314
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=74.86 E-value=19 Score=23.01 Aligned_cols=56 Identities=11% Similarity=0.048 Sum_probs=31.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCcc-EEEE--CCEEE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVP-AVFI--GGELV 77 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP-~ifi--~g~~i 77 (104)
+.+++-+....=...++++++.+++|..+..|.... +....+...+| ++++ +|+.+
T Consensus 93 ~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~-------~~~~~~v~~~P~~~~id~~G~i~ 151 (173)
T TIGR00385 93 LPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGK-------LGLDLGVYGAPETFLVDGNGVIL 151 (173)
T ss_pred CEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCc-------hHHhcCCeeCCeEEEEcCCceEE
Confidence 433333333333556788999999987666664432 22223457789 5566 46643
No 315
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=74.74 E-value=20 Score=24.57 Aligned_cols=73 Identities=12% Similarity=0.319 Sum_probs=43.9
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcCCcHHHHhh--
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKR-- 98 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~~L~~-- 98 (104)
.+-+|-.++++.|.++|..+..+++...+. +.+...|.+ .=.|+|+|- .--.|+...++-.|.+.|++
T Consensus 46 ~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~-~~Ie~~l~~------~d~IyVgGG---NTF~LL~~lke~gld~iIr~~v 115 (224)
T COG3340 46 EDDFYVEKVRNALAKLGLEVSELHLSKPPL-AAIENKLMK------ADIIYVGGG---NTFNLLQELKETGLDDIIRERV 115 (224)
T ss_pred chHHHHHHHHHHHHHcCCeeeeeeccCCCH-HHHHHhhhh------ccEEEECCc---hHHHHHHHHHHhCcHHHHHHHH
Confidence 578899999999999999999998875543 334343332 224566553 11233343444445555544
Q ss_pred -cCCcc
Q 034075 99 -VGAIW 103 (104)
Q Consensus 99 -~g~~~ 103 (104)
+|++|
T Consensus 116 k~G~~Y 121 (224)
T COG3340 116 KAGTPY 121 (224)
T ss_pred HcCCce
Confidence 45544
No 316
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=74.28 E-value=9.8 Score=26.22 Aligned_cols=49 Identities=8% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCEEEEEcC-----CChhHHHHHHHHHhc------CCCcEEEEeecCCC
Q 034075 2 AMERVAKMASERPVVIFSKS-----SCCICHSIKTLFCDF------GVNPAVYELDEMPG 50 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~~-----~Cp~C~~~~~~L~~~------~v~~~~~~vd~~~~ 50 (104)
+++.++++-.+-.|++|..+ .-++=..++.+|+++ ++.++++|-+..++
T Consensus 16 T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~ 75 (271)
T PF09822_consen 16 TKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPS 75 (271)
T ss_pred HHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChH
Confidence 34556666565568888887 567778999999877 56777777654443
No 317
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=73.94 E-value=5.9 Score=23.26 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=16.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
+.+|+.+. ++|..++.+|++.
T Consensus 23 l~~f~~~~-~~~~e~~~ll~e~ 43 (94)
T cd02974 23 LVASLDDS-EKSAELLELLEEI 43 (94)
T ss_pred EEEEeCCC-cchHHHHHHHHHH
Confidence 55677766 9999999999765
No 318
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=73.64 E-value=28 Score=25.31 Aligned_cols=70 Identities=16% Similarity=0.151 Sum_probs=43.3
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCC-CCCccEEEECCEEEeccHHH
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGC-SPAVPAVFIGGELVGGANQV 83 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~-~~tvP~ifi~g~~igg~~~~ 83 (104)
.++.+.+.+....-.++...|++.++++..+++..++....+.+.+..... ...+ .|-|+|--+-+....
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~-IIaiGGGS~~D~aK~ 93 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDV-VIAIGGGSVIDAGKA 93 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCE-EEEecCchHHHHHHH
Confidence 567777766555667788889999999888877666665555555543311 1233 555666544444433
No 319
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.63 E-value=15 Score=21.27 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=28.4
Q ss_pred HHHHHhcCCCEEEEEcCCChh--HHHHHHHHHhcCCCcEEEE
Q 034075 5 RVAKMASERPVVIFSKSSCCI--CHSIKTLFCDFGVNPAVYE 44 (104)
Q Consensus 5 ~~~~~~~~~~v~vf~~~~Cp~--C~~~~~~L~~~~v~~~~~~ 44 (104)
.+.+.+...+++|+.+..+.+ +..+++..++.++|+....
T Consensus 41 ~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~ 82 (97)
T PF10087_consen 41 RLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSR 82 (97)
T ss_pred HHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEEC
Confidence 467777777777777776665 4677777788888776654
No 320
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=72.73 E-value=2.8 Score=27.19 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.0
Q ss_pred EEEEEcCCChhHHHHHHHH
Q 034075 15 VVIFSKSSCCICHSIKTLF 33 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L 33 (104)
|.+|+..-||+|--+...|
T Consensus 1 I~~~~D~~cP~cyl~~~~l 19 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRL 19 (201)
T ss_pred CeEEecCcCccHHHHHHHH
Confidence 4689999999998555555
No 321
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=71.60 E-value=5.9 Score=25.44 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=29.3
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhc
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRL 61 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~ 61 (104)
++=|++.+++..|+++|++|+..-+.-+....++.+.+++.
T Consensus 11 SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 11 SDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 57899999999999999999876666666655565665543
No 322
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=71.47 E-value=14 Score=28.71 Aligned_cols=73 Identities=12% Similarity=0.109 Sum_probs=48.8
Q ss_pred EEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhc----------------------CCCCCccEEE--E
Q 034075 17 IFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRL----------------------GCSPAVPAVF--I 72 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~----------------------~~~~tvP~if--i 72 (104)
+=+++.=|.+.++...|++.|++|+..-.+.+.....+.++.+.. .+..+.|+|= +
T Consensus 417 ~gs~sd~~~~~~~~~~l~~~g~~~~~~v~sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~ 496 (577)
T PLN02948 417 MGSDSDLPTMKDAAEILDSFGVPYEVTIVSAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPV 496 (577)
T ss_pred ECchhhHHHHHHHHHHHHHcCCCeEEEEECCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCC
Confidence 334467899999999999999999866556555544444332211 3346777773 3
Q ss_pred CCEEEeccHHHHhHHHc
Q 034075 73 GGELVGGANQVMSLHLN 89 (104)
Q Consensus 73 ~g~~igg~~~~~~~~~~ 89 (104)
+....+|.|.|..+.+.
T Consensus 497 ~~~~~~g~~~l~s~~~~ 513 (577)
T PLN02948 497 KTSHLDGLDSLLSIVQM 513 (577)
T ss_pred CCCCCCcHHHHHHHhcC
Confidence 44467888888777665
No 323
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=71.39 E-value=15 Score=26.82 Aligned_cols=12 Identities=17% Similarity=0.636 Sum_probs=7.2
Q ss_pred CccEEEECCEEE
Q 034075 66 AVPAVFIGGELV 77 (104)
Q Consensus 66 tvP~ifi~g~~i 77 (104)
.+|.+.+++...
T Consensus 343 GIP~L~iE~D~~ 354 (377)
T TIGR03190 343 GIPTLFLEFDIT 354 (377)
T ss_pred CCCEEEEecCCC
Confidence 366666666554
No 324
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=71.07 E-value=4.5 Score=24.12 Aligned_cols=58 Identities=9% Similarity=0.049 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhcC---------CCcEEEEeec--CCCchhHHHHHHhcCCCCCccEEEECCEEEeccH
Q 034075 24 CICHSIKTLFCDFG---------VNPAVYELDE--MPGGRELEQDLQRLGCSPAVPAVFIGGELVGGAN 81 (104)
Q Consensus 24 p~C~~~~~~L~~~~---------v~~~~~~vd~--~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~ 81 (104)
|.-..++.++...| -.|...+.+. .....++.+.+.+...-..-|.|..+++.+-|++
T Consensus 36 ~s~~eL~~~l~~~g~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~LikRPIi~~~~~~~iGf~ 104 (105)
T cd03035 36 LDAATLERWLAKVGWETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIKRPVLETGGKVLVGFS 104 (105)
T ss_pred CCHHHHHHHHHHhChHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeeecceEEeCCEEEEeeC
Confidence 34445555555444 4565555442 1222445666776666678899998988888886
No 325
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=70.74 E-value=4.6 Score=26.26 Aligned_cols=20 Identities=15% Similarity=0.506 Sum_probs=14.6
Q ss_pred EEEcCCChhHHHHHHHHHhc
Q 034075 17 IFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L~~~ 36 (104)
+|+.|.|++|-...+.+.+.
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl 21 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKL 21 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHHH
Confidence 69999999999888777544
No 326
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=69.82 E-value=27 Score=23.40 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=31.6
Q ss_pred EEEEEcCCChh-HHH----HHHHHHhc----CCCcEEEEeecCCCchhHHHHHHhcCC-CCCccEEEECCE
Q 034075 15 VVIFSKSSCCI-CHS----IKTLFCDF----GVNPAVYELDEMPGGRELEQDLQRLGC-SPAVPAVFIGGE 75 (104)
Q Consensus 15 v~vf~~~~Cp~-C~~----~~~~L~~~----~v~~~~~~vd~~~~~~~~~~~l~~~~~-~~tvP~ifi~g~ 75 (104)
++.|+-+.||. |.. +..++++. +.++..+.|.-+|+..- .+.++++.. ....+-+.+.|.
T Consensus 71 lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt-p~~lk~Y~~~~~~~~~~~ltg~ 140 (207)
T COG1999 71 LVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT-PEVLKKYAELNFDPRWIGLTGT 140 (207)
T ss_pred EEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC-HHHHHHHhcccCCCCeeeeeCC
Confidence 56666677774 543 33444433 45666666665555432 445555544 333434455443
No 327
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=69.00 E-value=7.6 Score=25.72 Aligned_cols=28 Identities=4% Similarity=0.045 Sum_probs=20.2
Q ss_pred CEEEEEcCCChhHHHHHHHH----HhcCCCcE
Q 034075 14 PVVIFSKSSCCICHSIKTLF----CDFGVNPA 41 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L----~~~~v~~~ 41 (104)
+|-+|+..-||+|--.++.| +..+++..
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~ 33 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDIT 33 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEE
Confidence 57899999999997665555 44555543
No 328
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.04 E-value=42 Score=22.94 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=57.6
Q ss_pred CHHHHHHHHhcCCCE-EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEec
Q 034075 1 MAMERVAKMASERPV-VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGG 79 (104)
Q Consensus 1 ~a~~~~~~~~~~~~v-~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg 79 (104)
|....+.+.+..+++ -|+....=..+..+.+.|.+-|++.-++-... +...+.-+.+.+... ...|.+.|+--.|-.
T Consensus 3 m~~~~~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~t-p~a~~~i~~l~~~~~-~~~p~~~vGaGTVl~ 80 (222)
T PRK07114 3 FDRIAVLTAMKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRG-DFAHEVFAELVKYAA-KELPGMILGVGSIVD 80 (222)
T ss_pred CcHHHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC-CcHHHHHHHHHHHHH-hhCCCeEEeeEeCcC
Confidence 444455566666664 46666666678888889999999987777764 333332233332222 457888888777777
Q ss_pred cHHHHhHHHcC
Q 034075 80 ANQVMSLHLNR 90 (104)
Q Consensus 80 ~~~~~~~~~~g 90 (104)
.+++....+.|
T Consensus 81 ~e~a~~a~~aG 91 (222)
T PRK07114 81 AATAALYIQLG 91 (222)
T ss_pred HHHHHHHHHcC
Confidence 77777776665
No 329
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=64.88 E-value=7.2 Score=20.89 Aligned_cols=53 Identities=13% Similarity=0.060 Sum_probs=28.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
+.+|+...=..+..++.+|++.||++...+-....- ... .+..+.+.|+|...
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~-------~g~-~g~~~~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY-------AGE-PGTGGQVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----------S--SSSEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh-------hcc-cCccCceEEEECHH
Confidence 357777777788999999999999998876553322 111 23344488888775
No 330
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.66 E-value=27 Score=23.98 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=48.0
Q ss_pred CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcC--CcHHHH
Q 034075 21 SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNR--SLIPML 96 (104)
Q Consensus 21 ~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g--~L~~~L 96 (104)
+.-..|..++.+|+=.++||.++--+..+ .+ +....+|.+-+|...+.+++-+....+.. .|..+|
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Nae-------fm---SP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~l 99 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANAE-------FM---SPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWL 99 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCcc-------cc---CCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhh
Confidence 56778999999999999999877554322 12 22348999999999999998877665443 344444
No 331
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=64.54 E-value=7.2 Score=23.07 Aligned_cols=61 Identities=10% Similarity=0.054 Sum_probs=39.3
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCC--Cc----hhHHHHHHhcCCCCCccEEEECCE
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMP--GG----RELEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~--~~----~~~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
|.+++.++|.-..-++.+.+..+.++..++..... .. ..+...+.+.........+|+++-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~ 67 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEI 67 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence 57889999999999999999999887766654322 11 124444444322122456677763
No 332
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=64.06 E-value=14 Score=23.70 Aligned_cols=29 Identities=17% Similarity=0.498 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhcCCC
Q 034075 11 SERPVVIFSKSSCCICHSIKTLFCDFGVN 39 (104)
Q Consensus 11 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~ 39 (104)
+..+|++|..++|+.+..+...|...|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 34579999999999999999999998865
No 333
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=63.97 E-value=12 Score=27.14 Aligned_cols=52 Identities=27% Similarity=0.465 Sum_probs=31.8
Q ss_pred EEEEEc----CCChhHHHHHHHHHhc------------C--CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC
Q 034075 15 VVIFSK----SSCCICHSIKTLFCDF------------G--VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG 73 (104)
Q Consensus 15 v~vf~~----~~Cp~C~~~~~~L~~~------------~--v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~ 73 (104)
|++|++ ..|+-|+.+.+.++-. | +=|..+|.|+.++ .++... ..++|.+++=
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~------~Fq~l~-ln~~P~l~~f 133 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ------VFQQLN-LNNVPHLVLF 133 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH------HHHHhc-ccCCCeEEEe
Confidence 778887 4799999888665321 1 1134566664432 344444 3788988764
No 334
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=63.24 E-value=52 Score=24.04 Aligned_cols=84 Identities=7% Similarity=-0.070 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEee----------cCCCchh-HHHHHHhcCCCCCccEE
Q 034075 2 AMERVAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELD----------EMPGGRE-LEQDLQRLGCSPAVPAV 70 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd----------~~~~~~~-~~~~l~~~~~~~tvP~i 70 (104)
+.+.+.+++...-+.||+-+.|+.-..+..+.+...||+.....+ ..|.... +.+.+ ...+|+.+=.+
T Consensus 52 ~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI-~~~~Wr~~~~i 130 (372)
T cd06387 52 VTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLL-AHYKWEKFVYL 130 (372)
T ss_pred HHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHH-HhcCCCEEEEE
Confidence 456677788777789999999999999999999999998653222 2222111 22222 33677888677
Q ss_pred EECCEEEeccHHHHhH
Q 034075 71 FIGGELVGGANQVMSL 86 (104)
Q Consensus 71 fi~g~~igg~~~~~~~ 86 (104)
+-++.-++...++...
T Consensus 131 Yd~d~gl~~Lq~L~~~ 146 (372)
T cd06387 131 YDTERGFSILQAIMEA 146 (372)
T ss_pred ecCchhHHHHHHHHHh
Confidence 7555544444444433
No 335
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=62.83 E-value=21 Score=22.44 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 28 SIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 28 ~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
++..+|++.+++|+.++.+......+..+.+.. .....+-++++
T Consensus 3 ~~~~~L~~~~i~~~~~~~~~~~t~e~~a~~~~~-~~~~~~Ktlv~ 46 (156)
T cd04335 3 ELLALLDELGIAYETVEHPPVFTVEEADEVLGE-LPGAHTKNLFL 46 (156)
T ss_pred HHHHHHHHCCCceEEEecCCcCCHHHHHHhhcc-CCCceEEEEEE
Confidence 578899999999999887654444443333322 22345555554
No 336
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=62.80 E-value=16 Score=21.96 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=23.1
Q ss_pred hhHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 52 RELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 52 ~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
.++-+.+.+...--.-|.+..+++.+-|+++
T Consensus 77 ~e~i~~l~~~P~LikRPIi~~~~~~~vG~~~ 107 (114)
T TIGR00014 77 QELLDAMVAHPILLERPIVVAGDGARIGRPP 107 (114)
T ss_pred HHHHHHHHHCcCcccCCeEEECCEEEEcCCH
Confidence 3355666666666788999999998888863
No 337
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=62.43 E-value=15 Score=26.82 Aligned_cols=73 Identities=15% Similarity=0.122 Sum_probs=42.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCC--CchhHHHHHHhcCCCCCccEEE--ECCE-EEeccHHHHhH
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMP--GGRELEQDLQRLGCSPAVPAVF--IGGE-LVGGANQVMSL 86 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~--~~~~~~~~l~~~~~~~tvP~if--i~g~-~igg~~~~~~~ 86 (104)
..+.++|.+..+.+|. .+...-.|+....+.+|.+. +..++++.+.+......+|.++ .-|. ..|.+|++.++
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i 216 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEI 216 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHH
Confidence 3468899999898887 56666667776666666532 2244666666554334577433 3444 45667766543
No 338
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=62.38 E-value=20 Score=21.78 Aligned_cols=72 Identities=10% Similarity=0.159 Sum_probs=41.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCCcEE-EEeecCCCchhHHHHH---Hhc-CCCCCccEEEECCEEEeccHHHHhH
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCDFGVNPAV-YELDEMPGGRELEQDL---QRL-GCSPAVPAVFIGGELVGGANQVMSL 86 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~-~~vd~~~~~~~~~~~l---~~~-~~~~tvP~ifi~g~~igg~~~~~~~ 86 (104)
+.+|++.-.-.|+|-.+++. .++.|...-+ +|.+..+.. ..+ ... ....++|.++|... ..+.+++.
T Consensus 34 ~g~I~Lv~RG~C~F~~K~~~-Aq~aGA~avII~n~~~~~~~----~~~~m~~~~~~~~i~IP~v~Is~~---dG~~L~~~ 105 (118)
T cd02127 34 NGNIALIERGGCSFLTKAIN-AQKAGALAVIITDVNNDSDE----YYVEMIQDDSSRRADIPAAFLLGK---NGYMIRKT 105 (118)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCccc----cceEecCCCCCCCceEEEEEecHH---HHHHHHHH
Confidence 35688888889999999877 5666766543 343322111 111 111 12358999998765 22345554
Q ss_pred HHcCC
Q 034075 87 HLNRS 91 (104)
Q Consensus 87 ~~~g~ 91 (104)
.+.|.
T Consensus 106 l~~g~ 110 (118)
T cd02127 106 LERLG 110 (118)
T ss_pred HHcCC
Confidence 44443
No 339
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=61.95 E-value=26 Score=19.56 Aligned_cols=56 Identities=11% Similarity=-0.028 Sum_probs=36.1
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
..++.+.+-+....=...++.+++.+.++..+..+... +..+.+..+...+|++++
T Consensus 33 ~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~i~~iP~~~l 88 (95)
T PF13905_consen 33 KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDN-----NSELLKKYGINGIPTLVL 88 (95)
T ss_dssp TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHH-----HHHHHHHTT-TSSSEEEE
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcch-----HHHHHHHCCCCcCCEEEE
Confidence 34565555445577788999999998887766655322 234555556688999876
No 340
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=61.41 E-value=21 Score=21.78 Aligned_cols=51 Identities=12% Similarity=0.123 Sum_probs=33.4
Q ss_pred CCEEEEEcCCChhHHHHHHHH---HhcCCCcEEEEeecCCCchhHHHHHHhcCC
Q 034075 13 RPVVIFSKSSCCICHSIKTLF---CDFGVNPAVYELDEMPGGRELEQDLQRLGC 63 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L---~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~ 63 (104)
.-|.+|..+.|..-..++.++ ++-|++|.++.+....+...+....+..++
T Consensus 3 Pai~i~~~~~~~~~~~lrev~aGIEEEGip~~~~~~~~~~d~~~lA~~AA~~S~ 56 (112)
T PF02288_consen 3 PAIGIYVSKTIEGSDVLREVLAGIEEEGIPYRVVRVSDTSDVAFLAYQAARLSR 56 (112)
T ss_dssp TTECCCEECTTTCHHHHHHHHHHHHCTT-EEEEEEECSSSSHHHHHHHHHHHST
T ss_pred CEEEEEecCCCcchhHHHHHHhHhcccCCCeEEEeecCcccHHHHHHHHhhccC
Confidence 457788888888766666665 788999999877666665544333333343
No 341
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=61.25 E-value=21 Score=22.33 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=20.5
Q ss_pred HHHHHHHHhcCCCcEEEEeecCCCchh
Q 034075 27 HSIKTLFCDFGVNPAVYELDEMPGGRE 53 (104)
Q Consensus 27 ~~~~~~L~~~~v~~~~~~vd~~~~~~~ 53 (104)
.++.++|++.+++|+.++.+......+
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~ 28 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEE 28 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHH
Confidence 467889999999999988765444333
No 342
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.70 E-value=14 Score=23.87 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=16.4
Q ss_pred CCCCCccEEEECCEE-EeccHHH
Q 034075 62 GCSPAVPAVFIGGEL-VGGANQV 83 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~-igg~~~~ 83 (104)
.|...+|+++|||+. +.|....
T Consensus 171 ~gv~G~Pt~vv~g~~~~~G~~~~ 193 (201)
T cd03024 171 LGISGVPFFVFNGKYAVSGAQPP 193 (201)
T ss_pred CCCCcCCEEEECCeEeecCCCCH
Confidence 456899999999884 5666543
No 343
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=60.39 E-value=63 Score=23.43 Aligned_cols=85 Identities=9% Similarity=-0.029 Sum_probs=53.9
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEee----------cCCCc-hhHHHHHHhcCCCCCccEE
Q 034075 2 AMERVAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELD----------EMPGG-RELEQDLQRLGCSPAVPAV 70 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd----------~~~~~-~~~~~~l~~~~~~~tvP~i 70 (104)
+.+.+.+++...-+.||+-..+..+..+..+.++.+||+-....+ ..|.. ..+.. +.+..++.++=.+
T Consensus 52 ~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~-~i~~~~wk~vaii 130 (371)
T cd06388 52 VTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLS-LLDHYEWNRFVFL 130 (371)
T ss_pred HHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHH-HHHhcCceEEEEE
Confidence 345667778777788999999999999999999999997542221 11111 11222 2233567888677
Q ss_pred EECCEEEeccHHHHhHH
Q 034075 71 FIGGELVGGANQVMSLH 87 (104)
Q Consensus 71 fi~g~~igg~~~~~~~~ 87 (104)
+..+.-.+..+.+.+..
T Consensus 131 Yd~~~~~~~lq~l~~~~ 147 (371)
T cd06388 131 YDTDRGYSILQAIMEKA 147 (371)
T ss_pred ecCCccHHHHHHHHHhh
Confidence 76565455555554433
No 344
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=59.92 E-value=4.7 Score=27.19 Aligned_cols=83 Identities=20% Similarity=0.281 Sum_probs=43.0
Q ss_pred CEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE--eccHHHHhH
Q 034075 14 PVVIFSK-----SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV--GGANQVMSL 86 (104)
Q Consensus 14 ~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i--gg~~~~~~~ 86 (104)
.-.+|.+ -+|++|.....+=.+.+.++....++ ++-+.+...+.... =..+-||++. .+..++.++
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~~------~I~~~i~~~~~~~~-~V~lTGGEP~~~~~l~~Ll~~ 94 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSAD------EILADIKSLGYKAR-GVSLTGGEPLLQPNLLELLEL 94 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCHH------HHHHHHHhcCCCcc-eEEEeCCcCCCcccHHHHHHH
Confidence 3456666 36999986655433333333322222 23334444322122 2557788883 366777776
Q ss_pred HHcCCcHHHHhhcCCcc
Q 034075 87 HLNRSLIPMLKRVGAIW 103 (104)
Q Consensus 87 ~~~g~L~~~L~~~g~~~ 103 (104)
.+...+.-.|...|.+|
T Consensus 95 l~~~g~~~~lETngti~ 111 (212)
T COG0602 95 LKRLGFRIALETNGTIP 111 (212)
T ss_pred HHhCCceEEecCCCCcc
Confidence 66544544455455544
No 345
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=59.39 E-value=4.6 Score=28.61 Aligned_cols=11 Identities=27% Similarity=0.639 Sum_probs=8.5
Q ss_pred cCCChhHHHHH
Q 034075 20 KSSCCICHSIK 30 (104)
Q Consensus 20 ~~~Cp~C~~~~ 30 (104)
++.||||++-.
T Consensus 270 kqtCPYCKekV 280 (328)
T KOG1734|consen 270 KQTCPYCKEKV 280 (328)
T ss_pred CCCCchHHHHh
Confidence 47899998643
No 346
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=58.41 E-value=19 Score=19.86 Aligned_cols=28 Identities=29% Similarity=0.390 Sum_probs=19.4
Q ss_pred CCCCCccEEEECCEEEeccH--HHHhHHHc
Q 034075 62 GCSPAVPAVFIGGELVGGAN--QVMSLHLN 89 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~igg~~--~~~~~~~~ 89 (104)
+.-..-|.+.|||+.++... .+.++.+.
T Consensus 42 G~C~~gP~v~V~~~~~~~~t~~~i~~~~~~ 71 (72)
T cd03082 42 GRCERAPAALVGQRPVDGATPAAVAAAVEA 71 (72)
T ss_pred CccCCCCeEEECCEEeCCcCHHHHHHHHhc
Confidence 33467899999999988774 34444443
No 347
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=58.29 E-value=39 Score=20.41 Aligned_cols=62 Identities=10% Similarity=0.197 Sum_probs=30.5
Q ss_pred HHHHHHhcCCC-EEEEE-cC----CChhHH------HHHHHHHhcCCCcEEEEeecC-CCchhHHHHHHhcCCCCCccEE
Q 034075 4 ERVAKMASERP-VVIFS-KS----SCCICH------SIKTLFCDFGVNPAVYELDEM-PGGRELEQDLQRLGCSPAVPAV 70 (104)
Q Consensus 4 ~~~~~~~~~~~-v~vf~-~~----~Cp~C~------~~~~~L~~~~v~~~~~~vd~~-~~~~~~~~~l~~~~~~~tvP~i 70 (104)
+.++..-++.| +.||- ++ ||.+|+ .+.++|++ .|...-.|.. +++. .++..-+..++|.+
T Consensus 8 eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~eg~----~la~~l~~~~~P~~ 80 (116)
T cd02991 8 QALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAKPEGY----RVSQALRERTYPFL 80 (116)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCChHHH----HHHHHhCCCCCCEE
Confidence 33444444555 34443 34 688885 34455543 3443333332 2222 23333445799988
Q ss_pred -EE
Q 034075 71 -FI 72 (104)
Q Consensus 71 -fi 72 (104)
++
T Consensus 81 ~~l 83 (116)
T cd02991 81 AMI 83 (116)
T ss_pred EEE
Confidence 45
No 348
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=58.10 E-value=67 Score=23.05 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=31.7
Q ss_pred CCEEEEEcCCC--hhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHh
Q 034075 13 RPVVIFSKSSC--CICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQR 60 (104)
Q Consensus 13 ~~v~vf~~~~C--p~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~ 60 (104)
.++++.+.+.. +...++...|++.++.+.+.++..++....+.+..+.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~ 72 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEI 72 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHH
Confidence 45655554322 6777888899999998876667766665555555443
No 349
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=57.59 E-value=32 Score=21.60 Aligned_cols=63 Identities=13% Similarity=0.324 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcCCcHHHHhh
Q 034075 26 CHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKR 98 (104)
Q Consensus 26 C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~~L~~ 98 (104)
-.++++.|.++|+.+..+++... +..++.+.+... -.||+.|- .-..+....++-.|.+.|++
T Consensus 2 ~~~~~~~f~~~g~~v~~l~~~~~-~~~~~~~~i~~a------d~I~~~GG---~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 2 VEKFRKAFRKLGFEVDQLDLSDR-NDADILEAIREA------DAIFLGGG---DTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHCT-EEEECCCTSC-GHHHHHHHHHHS------SEEEE--S----HHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEeccCC-ChHHHHHHHHhC------CEEEECCC---CHHHHHHHHHhCCHHHHHHH
Confidence 46788999999988666666543 222344445433 25665542 12334555556667777765
No 350
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=57.38 E-value=62 Score=22.44 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=39.9
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
.+++|+.++|.-..-++.+..+.+.++.............+...+.... .-..+|||+-
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~vl~iDEi 90 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTNLE---EGDVLFIDEI 90 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHhcc---cCCEEEEehH
Confidence 4899999999999999999999988876655433233333444444332 2357788773
No 351
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=57.38 E-value=73 Score=23.21 Aligned_cols=48 Identities=13% Similarity=0.221 Sum_probs=34.4
Q ss_pred CCEEEEEcC----CChhHHHHHHHHHhcCCCcEEE-EeecCCCchhHHHHHHh
Q 034075 13 RPVVIFSKS----SCCICHSIKTLFCDFGVNPAVY-ELDEMPGGRELEQDLQR 60 (104)
Q Consensus 13 ~~v~vf~~~----~Cp~C~~~~~~L~~~~v~~~~~-~vd~~~~~~~~~~~l~~ 60 (104)
.++.+.+.+ ..+...+++..|++.++++.++ ++..++....+.+....
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~ 78 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAAL 78 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHH
Confidence 466666653 4678899999999999998766 46767776665555433
No 352
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=57.32 E-value=34 Score=25.65 Aligned_cols=78 Identities=21% Similarity=0.277 Sum_probs=47.9
Q ss_pred hHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCC---------CCCccEEEECCEEE-----------------e
Q 034075 25 ICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGC---------SPAVPAVFIGGELV-----------------G 78 (104)
Q Consensus 25 ~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~---------~~tvP~ifi~g~~i-----------------g 78 (104)
.+.++..+=+.++.+...+-..+.....+.++.++++.+ +..+|.+..+|... |
T Consensus 91 ~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~G 170 (420)
T PF01704_consen 91 IVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGLDVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPG 170 (420)
T ss_dssp HHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGSSCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-T
T ss_pred HHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCCCcceEEEeecCcceEeCCCccccccccccccchhhccCCC
Confidence 355666655677888777667767777778888887543 25677776666311 3
Q ss_pred ccHHHHhHHHcCCcHHHHhhcCCcc
Q 034075 79 GANQVMSLHLNRSLIPMLKRVGAIW 103 (104)
Q Consensus 79 g~~~~~~~~~~g~L~~~L~~~g~~~ 103 (104)
.-+-...|+.+|-|+++++ .|.-|
T Consensus 171 hGdi~~aL~~sG~Ld~l~~-~G~ey 194 (420)
T PF01704_consen 171 HGDIYRALYNSGLLDKLLA-RGIEY 194 (420)
T ss_dssp GGGHHHHHHHTTHHHHHHH-TT--E
T ss_pred CcceehhhhccChHHHHHH-cCCeE
Confidence 3344677888888888654 46544
No 353
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=57.29 E-value=19 Score=20.96 Aligned_cols=64 Identities=9% Similarity=0.007 Sum_probs=38.9
Q ss_pred EEEEEcCCChhHHHHHHHH----Hhc-C--CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC-----CEEEeccHH
Q 034075 15 VVIFSKSSCCICHSIKTLF----CDF-G--VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG-----GELVGGANQ 82 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L----~~~-~--v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~-----g~~igg~~~ 82 (104)
..+|....-|.+.++.+-+ ++. + ...+++|+.+.|+ +++....-.+|++.-- -+.||++++
T Consensus 6 LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~-------lAE~~~IvATPtLIK~~P~P~rriiGdls~ 78 (87)
T TIGR02654 6 LKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQ-------LAEEDKILATPTLSKILPPPVRKIIGDLSD 78 (87)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-------HHhHCCEEEecHHhhcCCCCcceeeccccc
Confidence 5678888888887665555 332 2 3345677776664 4444445667776532 367888776
Q ss_pred HHh
Q 034075 83 VMS 85 (104)
Q Consensus 83 ~~~ 85 (104)
...
T Consensus 79 ~~~ 81 (87)
T TIGR02654 79 RER 81 (87)
T ss_pred hHH
Confidence 543
No 354
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=57.22 E-value=14 Score=27.96 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=17.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFG 37 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~ 37 (104)
+++|.. .|++|..++.+|++..
T Consensus 23 ~~~~~~-~~~~~~~~~~~~~~~~ 44 (517)
T PRK15317 23 LVASLD-DSEKSAELKELLEEIA 44 (517)
T ss_pred EEEEeC-CCchHHHHHHHHHHHH
Confidence 455665 7999999999997763
No 355
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=56.68 E-value=72 Score=23.19 Aligned_cols=71 Identities=11% Similarity=0.217 Sum_probs=42.3
Q ss_pred CCEEEEEcCC---ChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHH
Q 034075 13 RPVVIFSKSS---CCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQV 83 (104)
Q Consensus 13 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~ 83 (104)
.++.+.+.+. -+...+++..|++.++++..++ +..++....+.+..+......-=-.|=|+|-.+-+....
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ 101 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKL 101 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHH
Confidence 4566666553 4567889999999999887654 566666665555554442211112455676554444433
No 356
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=56.58 E-value=51 Score=21.16 Aligned_cols=30 Identities=13% Similarity=0.329 Sum_probs=21.3
Q ss_pred CCCEEEEEc-CCChhHHHHHHH-HHhcCCCcE
Q 034075 12 ERPVVIFSK-SSCCICHSIKTL-FCDFGVNPA 41 (104)
Q Consensus 12 ~~~v~vf~~-~~Cp~C~~~~~~-L~~~~v~~~ 41 (104)
...++||.. +-|++|.....- .++.|++.-
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~L 130 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKLGLKSL 130 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHcCCCeE
Confidence 445777766 679999965544 488898843
No 357
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=56.54 E-value=19 Score=21.49 Aligned_cols=31 Identities=19% Similarity=0.108 Sum_probs=23.7
Q ss_pred hhHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 52 RELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 52 ~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
.++.+.+.+...--.-|.|+-+++.+-|+++
T Consensus 78 ~e~~~~l~~~p~LikRPIi~~~~~~~vGf~~ 108 (111)
T cd03036 78 EEALELLSSDGMLIKRPFVVDDDKVLVGFKE 108 (111)
T ss_pred HHHHHHHHhCcCeeeCCEEEeCCEEEEccCh
Confidence 3455666666666788999999999888875
No 358
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=56.33 E-value=74 Score=23.04 Aligned_cols=70 Identities=14% Similarity=0.232 Sum_probs=42.4
Q ss_pred CCEEEEEcC---CChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHhcCCC-CCccEEEECCEEEeccHHH
Q 034075 13 RPVVIFSKS---SCCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQRLGCS-PAVPAVFIGGELVGGANQV 83 (104)
Q Consensus 13 ~~v~vf~~~---~Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~~~~~-~tvP~ifi~g~~igg~~~~ 83 (104)
.++.+.+.+ ..+...++...|++.|+++..++ +..++....+.+.+...... ..+ .|=|+|--+-+....
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~-IIaiGGGSviD~aK~ 99 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDG-VIAFGGGSALDLAKA 99 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCE-EEEeCCchHHHHHHH
Confidence 456655543 35678899999999999987664 66666666666655443221 222 444777554444433
No 359
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=56.28 E-value=75 Score=23.02 Aligned_cols=41 Identities=7% Similarity=0.250 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEE
Q 034075 2 AMERVAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAV 42 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~ 42 (104)
|...+.+++...-+.||+..+++.+..+..++++.++|+-.
T Consensus 51 a~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is 91 (363)
T cd06381 51 AVQEACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLF 91 (363)
T ss_pred HHHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEE
Confidence 34566778877456799999999999999999999998654
No 360
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=55.92 E-value=17 Score=25.31 Aligned_cols=87 Identities=11% Similarity=0.140 Sum_probs=49.2
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEE--------EeecCCCchhHHHHHHhcCCCCCcc-----EEEECCEEE
Q 034075 11 SERPVVIFSKSSCCICHSIKTLFCDFGVNPAVY--------ELDEMPGGRELEQDLQRLGCSPAVP-----AVFIGGELV 77 (104)
Q Consensus 11 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~--------~vd~~~~~~~~~~~l~~~~~~~tvP-----~ifi~g~~i 77 (104)
..+++.+|+.=.=..-..+...|++.||+|+.. -|+. .+..+.+..|+..+ .+.-. .+|-.+.++
T Consensus 17 ~gC~~~LysgL~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~-~~~~~Ar~~La~~G-LP~~g~~~~~~lFd~~~l~ 94 (249)
T PRK15348 17 TACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQ-SQFINAVELLRLNG-YPHRQFTTADKMFPANQLV 94 (249)
T ss_pred hcCChHHHcCCCHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecH-HHHHHHHHHHHHcC-CCCCCCccHHHhCCccccc
Confidence 345667777666667788999999999999753 1211 11122445555543 12221 144434443
Q ss_pred eccHHH---HhHHHcCCcHHHHhhc
Q 034075 78 GGANQV---MSLHLNRSLIPMLKRV 99 (104)
Q Consensus 78 gg~~~~---~~~~~~g~L~~~L~~~ 99 (104)
-+..+. ..+..+|+|.+.|+..
T Consensus 95 ~t~te~~qki~y~regELarTI~~i 119 (249)
T PRK15348 95 VSPQEEQQKINFLKEQRIEGMLSQM 119 (249)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHhC
Confidence 333332 2355689999988654
No 361
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=55.83 E-value=91 Score=23.89 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCC---------CCCccEEEECCE---------------EEeccHH
Q 034075 27 HSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGC---------SPAVPAVFIGGE---------------LVGGANQ 82 (104)
Q Consensus 27 ~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~---------~~tvP~ifi~g~---------------~igg~~~ 82 (104)
.++..+=+++|.....+-..+.....+.++.++++.. +..+|.+..+|. +-|--+-
T Consensus 116 ~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~ 195 (469)
T PLN02474 116 IQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNSNIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDV 195 (469)
T ss_pred HHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCCccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchH
Confidence 3444444566777666666655565666667766532 234555554431 1233345
Q ss_pred HHhHHHcCCcHHHHhhcCCcc
Q 034075 83 VMSLHLNRSLIPMLKRVGAIW 103 (104)
Q Consensus 83 ~~~~~~~g~L~~~L~~~g~~~ 103 (104)
...++++|.|++++ +.|.-|
T Consensus 196 y~aL~~sG~Ld~l~-~~G~ey 215 (469)
T PLN02474 196 FPSLMNSGKLDALL-SQGKEY 215 (469)
T ss_pred HHHHHhCChHHHHH-hcCCEE
Confidence 77888899888864 555544
No 362
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=55.76 E-value=59 Score=21.66 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHHhc-CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcCCcHHHHhhc
Q 034075 23 CCICHSIKTLFCDF-GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRV 99 (104)
Q Consensus 23 Cp~C~~~~~~L~~~-~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~~L~~~ 99 (104)
=.+...+.+.|.+. |.+...+++...++ ..+.+.. .=.||+.| |....+....+.-.|.+.|+++
T Consensus 45 ~~~~~~~~~a~~~l~G~~~~~~~~~~~~~---~~~~l~~------ad~I~l~G---G~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 45 DEYTARFYAAFESLRGVEVSHLHLFDTED---PLDALLE------ADVIYVGG---GNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred HHHHHHHHHHHhhccCcEEEEEeccCccc---HHHHHhc------CCEEEECC---chHHHHHHHHHHcCHHHHHHHH
Confidence 46788899999999 88877766543222 2334432 22678877 5666666666666788888764
No 363
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=55.76 E-value=50 Score=23.07 Aligned_cols=63 Identities=14% Similarity=0.155 Sum_probs=40.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCC-CcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCDFGV-NPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v-~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
.+.+.+|+..+|.-..-+|.+|.+++- ....++|+... ...+.+.+......+.-=.||+|+=
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~-L~~l~~l~~~l~~~~~kFIlf~DDL 115 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED-LGDLPELLDLLRDRPYKFILFCDDL 115 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH-hccHHHHHHHHhcCCCCEEEEecCC
Confidence 356999999999999999999987754 36778876542 1223333433333232225688874
No 364
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=55.58 E-value=14 Score=25.26 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.8
Q ss_pred EEEcCCChhHHHHHHHHHhcCCC
Q 034075 17 IFSKSSCCICHSIKTLFCDFGVN 39 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L~~~~v~ 39 (104)
++-+..||.++++|+.|++.++.
T Consensus 150 i~~t~~~pla~~~R~~Lrk~~~~ 172 (231)
T cd00755 150 ISKTSGDPLARKVRKRLRKRGIF 172 (231)
T ss_pred EeccccCcHHHHHHHHHHHcCCC
Confidence 45556899999999999999986
No 365
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.55 E-value=16 Score=20.70 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=18.6
Q ss_pred CChhHHHHHHHHHhcCCCcEEE
Q 034075 22 SCCICHSIKTLFCDFGVNPAVY 43 (104)
Q Consensus 22 ~Cp~C~~~~~~L~~~~v~~~~~ 43 (104)
.=.||+++..+|.+++++|+..
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~ 35 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHM 35 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeee
Confidence 3469999999999999998753
No 366
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=55.23 E-value=40 Score=20.65 Aligned_cols=25 Identities=24% Similarity=0.191 Sum_probs=19.0
Q ss_pred CCCCCccEEEECCEEE-eccHHHHhH
Q 034075 62 GCSPAVPAVFIGGELV-GGANQVMSL 86 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~i-gg~~~~~~~ 86 (104)
.|...+|.+++|+++| -|-.++...
T Consensus 79 lgi~k~PAVVfD~~~VVYG~tDV~~A 104 (114)
T PF07511_consen 79 LGITKYPAVVFDDRYVVYGETDVARA 104 (114)
T ss_pred hCccccCEEEEcCCeEEecccHHHHH
Confidence 4668999999999874 677666543
No 367
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=54.47 E-value=38 Score=25.40 Aligned_cols=60 Identities=17% Similarity=0.284 Sum_probs=40.6
Q ss_pred EEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCC------CchhHHHHHHhcCC---CCCccE-EEECC
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMP------GGRELEQDLQRLGC---SPAVPA-VFIGG 74 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~------~~~~~~~~l~~~~~---~~tvP~-ifi~g 74 (104)
+-+|+-|+|.-...++.+..+.|+++..++...-. ....+++.+..... ...-|. ||||.
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDE 220 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIND 220 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEeh
Confidence 56789999999999999999999998777654321 12236666644321 123454 57875
No 368
>PRK09301 circadian clock protein KaiB; Provisional
Probab=54.44 E-value=22 Score=21.38 Aligned_cols=64 Identities=9% Similarity=0.049 Sum_probs=39.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhc-----C--CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEEC-----CEEEeccHH
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF-----G--VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIG-----GELVGGANQ 82 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~-----~--v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~-----g~~igg~~~ 82 (104)
..+|....-|...++.+-|.+. + ...+++|+.+.|+ +++......+|++.-- -+.||.+++
T Consensus 9 LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPe-------lAE~~~IvATPTLIK~~P~P~rriiGDlsd 81 (103)
T PRK09301 9 LKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQ-------LAEEDKILATPTLAKILPPPVRKIIGDLSD 81 (103)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHh-------HHhHCCeEEecHHhhcCCCCcceeeccccc
Confidence 5688888888888666555332 2 3345677776664 4444445667776532 367888876
Q ss_pred HHh
Q 034075 83 VMS 85 (104)
Q Consensus 83 ~~~ 85 (104)
...
T Consensus 82 ~~k 84 (103)
T PRK09301 82 REK 84 (103)
T ss_pred HHH
Confidence 544
No 369
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=54.41 E-value=26 Score=21.67 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhc---------CCCcEEEEeecCC-CchhHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 24 CICHSIKTLFCDF---------GVNPAVYELDEMP-GGRELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 24 p~C~~~~~~L~~~---------~v~~~~~~vd~~~-~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
|.-..++.+|... +-.|...+.+... +..++-+.+.+...-..-|.|+.+|+.+-|+++
T Consensus 38 ~t~~eL~~~l~~~g~~~lin~~~~~~r~l~~~~~~ls~~e~i~lm~~~P~LIKRPIi~~~~~~~iGf~~ 106 (126)
T TIGR01616 38 WHADTLRPYFGNKPVGSWFNRAAPRVKSGEVNPDSIDEASALALMVSDPLLIRRPLMDLGGIRCAGFDR 106 (126)
T ss_pred cCHHHHHHHHHHcCHHHHHhccchHhhhCCCCcccCCHHHHHHHHHhCcCeEeCCEEEECCEEEEcCCH
Confidence 4444555555544 4445544433221 223355566666666788999999999999874
No 370
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=54.28 E-value=46 Score=20.02 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=39.4
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcC
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNR 90 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g 90 (104)
..+|++.....|++..+++. ..+.|...-++--+...... .-.+...+...++|.++|... .-+.++++.+.|
T Consensus 43 ~GkIvLv~rg~c~f~~K~~~-A~~aGA~avIi~n~~~~~~~--~~~~~~~~~~~~iP~~~Is~~---~G~~l~~~l~~g 115 (122)
T cd04816 43 KGAIVLVDRGGCPFADKQKV-AAARGAVAVIVVNNSDGGGT--AGTLGAPNIDLKVPVGVITKA---AGAALRRRLGAG 115 (122)
T ss_pred CCeEEEEECCCCCHHHHHHH-HHHCCCcEEEEEeCCCCccc--cccccCCCCCCeeeEEEEcHH---HHHHHHHHHcCC
Confidence 45789888999999888775 55667664433212111100 001111112357899998764 223455554444
No 371
>PRK04195 replication factor C large subunit; Provisional
Probab=54.14 E-value=93 Score=23.50 Aligned_cols=35 Identities=9% Similarity=0.193 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEee
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELD 46 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd 46 (104)
...+.+|+.|+|.-...+..+.++.+.++.+++..
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 34588999999999999999999998776666654
No 372
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=54.01 E-value=41 Score=25.41 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=29.9
Q ss_pred HHhcCCCEEEEEc-----CCChhHHHHHHHHHhcCCCcEEEEee
Q 034075 8 KMASERPVVIFSK-----SSCCICHSIKTLFCDFGVNPAVYELD 46 (104)
Q Consensus 8 ~~~~~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~~~~~vd 46 (104)
.+...|-||+=.+ ++|-||.-++..|...|.+...+++-
T Consensus 212 AlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~i 255 (583)
T KOG2454|consen 212 ALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQVI 255 (583)
T ss_pred HHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhhee
Confidence 3445566666544 58999999999999999998777653
No 373
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=53.77 E-value=31 Score=20.86 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=35.0
Q ss_pred CEEEEEcCCCh----hHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE
Q 034075 14 PVVIFSKSSCC----ICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 14 ~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if 71 (104)
++.++.-..-| |=+...+..++.|+.++.+.+..+....++.+.+.+.+..+++=-|+
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~V~GIl 92 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPSVHGIL 92 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT-SEEE
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCCCCEEE
Confidence 44444444444 44566677788999999999987777777777777765445543443
No 374
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=53.67 E-value=25 Score=21.13 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=28.4
Q ss_pred CCEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeec
Q 034075 13 RPVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDE 47 (104)
Q Consensus 13 ~~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~ 47 (104)
.++++++. +....|.++.+.|.+.|++...+++..
T Consensus 10 ~di~iia~G~~~~~al~A~~~L~~~Gi~~~vi~~~~ 45 (124)
T PF02780_consen 10 ADITIIAYGSMVEEALEAAEELEEEGIKAGVIDLRT 45 (124)
T ss_dssp SSEEEEEETTHHHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCEEEEeehHHHHHHHHHHHHHHHcCCceeEEeeEE
Confidence 45665555 678999999999999999999988754
No 375
>KOG4700 consensus Uncharacterized homolog of ribosome-binding factor A [General function prediction only]
Probab=53.66 E-value=11 Score=25.06 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCCCccEE-EECCEEEeccHHHHhHHHcCC
Q 034075 54 LEQDLQRLGCSPAVPAV-FIGGELVGGANQVMSLHLNRS 91 (104)
Q Consensus 54 ~~~~l~~~~~~~tvP~i-fi~g~~igg~~~~~~~~~~g~ 91 (104)
++..|.+.-+..++|-| ||+++-.-+..++.+++..-+
T Consensus 101 ~rh~l~~~~~~g~vP~IkFV~DK~~~~l~e~d~ll~~aD 139 (207)
T KOG4700|consen 101 IRHRLEESIGIGTVPEIKFVGDKALLMLQEMDKLLREAD 139 (207)
T ss_pred HHHHHHHHhccccCCceEEecchHHHHHHHHHHHHHHhc
Confidence 44445554555677755 999997666666555544433
No 376
>PLN02790 transketolase
Probab=53.61 E-value=45 Score=26.45 Aligned_cols=89 Identities=11% Similarity=-0.027 Sum_probs=51.5
Q ss_pred CCEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeecCCCchh-HHHHHHhcCCCCCccEEEECCEEEeccHHH-------
Q 034075 13 RPVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRE-LEQDLQRLGCSPAVPAVFIGGELVGGANQV------- 83 (104)
Q Consensus 13 ~~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~-~~~~l~~~~~~~tvP~ifi~g~~igg~~~~------- 83 (104)
.++++.+. +....|.++.+.|++.|+...++++..-.-..+ ...+..+.-+...-+.+.+.....+|+...
T Consensus 541 ~dv~iia~G~~v~~Al~Aa~~L~~~gi~~~VV~~~~ikpld~~~~~y~~~~~~~~~~~vvtiE~~~~~G~~~~~~~~~~~ 620 (654)
T PLN02790 541 PDLILIGTGSELEIAAKAAKELRKEGKKVRVVSMVCWELFEEQSDEYKESVLPSSVTARVSVEAGSTFGWEKYVGSKGKV 620 (654)
T ss_pred CCEEEEEcCHHHHHHHHHHHHHHhcCCceEEEecCccchhhhhHHHHHHhhhccccceEEEecCccchhHHHhcCCCceE
Confidence 35655544 668889999999999999999999764322111 111121222222334555554444554432
Q ss_pred ---HhHHHcCCcHHHHhhcCC
Q 034075 84 ---MSLHLNRSLIPMLKRVGA 101 (104)
Q Consensus 84 ---~~~~~~g~L~~~L~~~g~ 101 (104)
..+-.+|...++++..|+
T Consensus 621 igvd~Fg~sg~~~~l~~~~Gl 641 (654)
T PLN02790 621 IGVDRFGASAPAGILYKEFGF 641 (654)
T ss_pred EEeCCCcCcCCHHHHHHHhCC
Confidence 234456777777777765
No 377
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=53.60 E-value=81 Score=23.05 Aligned_cols=70 Identities=11% Similarity=0.191 Sum_probs=42.0
Q ss_pred CCEEEEEcCC----ChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHhcCC-CCCccEEEECCEEEeccHHH
Q 034075 13 RPVVIFSKSS----CCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQRLGC-SPAVPAVFIGGELVGGANQV 83 (104)
Q Consensus 13 ~~v~vf~~~~----Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~~~~-~~tvP~ifi~g~~igg~~~~ 83 (104)
.++.+.+.+. ++...++...|++.++++..++ +..++....+.+..+.... ...+ .|-|+|-.+.+.-..
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~-IIaiGGGS~iD~aK~ 102 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQA-VIAIGGGSPIDSAKS 102 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCE-EEEeCCccHHHHHHH
Confidence 3566666543 6777899999999999887664 6666665555444443311 1222 445676554444433
No 378
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.06 E-value=12 Score=22.44 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=13.9
Q ss_pred CCCccEEEECCEEEecc
Q 034075 64 SPAVPAVFIGGELVGGA 80 (104)
Q Consensus 64 ~~tvP~ifi~g~~igg~ 80 (104)
-.-+|.+|.||+.||=-
T Consensus 79 DECTplvF~n~~LvgWG 95 (102)
T PF11399_consen 79 DECTPLVFKNGKLVGWG 95 (102)
T ss_pred CceEEEEEECCEEEEEc
Confidence 36799999999998743
No 379
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=52.86 E-value=65 Score=21.28 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=42.4
Q ss_pred CCEEEEEcC---CChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHc
Q 034075 13 RPVVIFSKS---SCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLN 89 (104)
Q Consensus 13 ~~v~vf~~~---~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~ 89 (104)
.+|.+..+. .+.++....+.++++|.+...+.+....+..++.+.+.. .-.||+.| |.-..+....+.
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~------ad~I~~~G---G~~~~~~~~l~~ 100 (210)
T cd03129 30 ARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLE------ADGIFVGG---GNQLRLLSVLRE 100 (210)
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhh------CCEEEEcC---CcHHHHHHHHHh
Confidence 345554442 367899999999999998776665333333444444433 33566666 333344333333
Q ss_pred -CCcHHHHh
Q 034075 90 -RSLIPMLK 97 (104)
Q Consensus 90 -g~L~~~L~ 97 (104)
+-++.+++
T Consensus 101 t~~~~~i~~ 109 (210)
T cd03129 101 TPLLDAILK 109 (210)
T ss_pred CChHHHHHH
Confidence 34444443
No 380
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=52.60 E-value=86 Score=22.63 Aligned_cols=84 Identities=10% Similarity=-0.026 Sum_probs=51.8
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEee----------cCCCc-hhHHHHHHhcCCCCCccEE
Q 034075 2 AMERVAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELD----------EMPGG-RELEQDLQRLGCSPAVPAV 70 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd----------~~~~~-~~~~~~l~~~~~~~tvP~i 70 (104)
+.+.+.++++..-+.||+-..+..+..+..+.++.++|+-....+ ..|.. ..+.+.+ +..++.++=.+
T Consensus 46 ~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~d~i-~~~~wk~vail 124 (370)
T cd06389 46 VTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALLSLI-EYYQWDKFAYL 124 (370)
T ss_pred HHHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHHHHH-HhcCCcEEEEE
Confidence 345677788777788999999999999999999999997643221 11211 1122222 23567888666
Q ss_pred EECCEEEeccHHHHhH
Q 034075 71 FIGGELVGGANQVMSL 86 (104)
Q Consensus 71 fi~g~~igg~~~~~~~ 86 (104)
+-++.-.+..+++.+.
T Consensus 125 Ydsd~gl~~lq~l~~~ 140 (370)
T cd06389 125 YDSDRGLSTLQAVLDS 140 (370)
T ss_pred ecCchHHHHHHHHHHh
Confidence 7544333333444333
No 381
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=52.40 E-value=40 Score=21.09 Aligned_cols=23 Identities=17% Similarity=0.131 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCCcEEEEeecCCC
Q 034075 28 SIKTLFCDFGVNPAVYELDEMPG 50 (104)
Q Consensus 28 ~~~~~L~~~~v~~~~~~vd~~~~ 50 (104)
.+.++|++.+++|+.++-+..++
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~~ 24 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDPD 24 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCCC
Confidence 47889999999999998876543
No 382
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=52.24 E-value=35 Score=18.04 Aligned_cols=16 Identities=13% Similarity=0.054 Sum_probs=7.4
Q ss_pred hHHHHHHHHHhcCCCc
Q 034075 25 ICHSIKTLFCDFGVNP 40 (104)
Q Consensus 25 ~C~~~~~~L~~~~v~~ 40 (104)
....+..++++.|..+
T Consensus 38 ~~~~i~~~~~~~g~~~ 53 (69)
T cd00291 38 AVEDIPAWAKETGHEV 53 (69)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 3444444455444443
No 383
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=52.01 E-value=23 Score=19.84 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=23.2
Q ss_pred EEEEEcCCChhHHHHHHHH----Hhc-C--CCcEEEEeecCCC
Q 034075 15 VVIFSKSSCCICHSIKTLF----CDF-G--VNPAVYELDEMPG 50 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L----~~~-~--v~~~~~~vd~~~~ 50 (104)
..+|....-|...++.+-| ++. + ...+++|+.++|+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~ 46 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQ 46 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHh
Confidence 4678887778887655544 443 3 3356788877775
No 384
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=51.99 E-value=20 Score=27.23 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=16.9
Q ss_pred EEEEEcCCChhHHHHHHHHHhc
Q 034075 15 VVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
+++|+. .|++|..++.+|++.
T Consensus 23 ~~~~~~-~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 23 LVLSAG-SHEKSKELLELLDEI 43 (515)
T ss_pred EEEEeC-CCchhHHHHHHHHHH
Confidence 445665 799999999999776
No 385
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=51.04 E-value=87 Score=22.21 Aligned_cols=71 Identities=13% Similarity=0.111 Sum_probs=41.3
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHh----cCCC--cEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEE
Q 034075 3 MERVAKMASERPVVIFSKSSCCICHSIKTLFCD----FGVN--PAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGEL 76 (104)
Q Consensus 3 ~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~----~~v~--~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~ 76 (104)
++.++++-. ..+.+...+..+. ..+...|+. .++. |..+.+...|....++..+++.+... ==.+|||+..
T Consensus 37 ~e~L~~L~~-~Gi~lai~S~n~~-~~a~~~l~~~~~~~~~~~~f~~~~~~~~pk~~~i~~~~~~l~i~~-~~~vfidD~~ 113 (320)
T TIGR01686 37 QEKIKTLKK-QGFLLALASKNDE-DDAKKVFERRKDFILQAEDFDARSINWGPKSESLRKIAKKLNLGT-DSFLFIDDNP 113 (320)
T ss_pred HHHHHHHHh-CCCEEEEEcCCCH-HHHHHHHHhCccccCcHHHeeEEEEecCchHHHHHHHHHHhCCCc-CcEEEECCCH
Confidence 344444433 3455555555555 677778877 5655 55555555565555777776654322 2377888864
No 386
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=51.02 E-value=59 Score=25.79 Aligned_cols=66 Identities=15% Similarity=0.102 Sum_probs=42.1
Q ss_pred CEEE-EEcCCChhHHHHHHHHHhcCCCcEEEEeecC-CCchhHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 14 PVVI-FSKSSCCICHSIKTLFCDFGVNPAVYELDEM-PGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 14 ~v~v-f~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~-~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
+|.+ =.-..|+.|.++...|.+.|+..+++|.--- |=..+ .+.+.......=..+-+|-..||+-.
T Consensus 503 ~vail~~G~~~~~al~vae~L~~~Gi~~TVvd~rfvkPlD~~---ll~~La~~h~~~vtlEe~~~~GG~Gs 570 (627)
T COG1154 503 KVAILAFGTMLPEALKVAEKLNAYGISVTVVDPRFVKPLDEA---LLLELAKSHDLVVTLEENVVDGGFGS 570 (627)
T ss_pred cEEEEecchhhHHHHHHHHHHHhcCCCcEEEcCeecCCCCHH---HHHHHHhhcCeEEEEecCcccccHHH
Confidence 4443 3336899999999999999999999986432 22222 23333332223244567777899865
No 387
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=50.97 E-value=21 Score=17.64 Aligned_cols=24 Identities=13% Similarity=0.061 Sum_probs=18.5
Q ss_pred EEECCEEEeccH--HHHhHHHcCCcH
Q 034075 70 VFIGGELVGGAN--QVMSLHLNRSLI 93 (104)
Q Consensus 70 ifi~g~~igg~~--~~~~~~~~g~L~ 93 (104)
+..||+..|-++ ++..+.++|++.
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCC
Confidence 345888888774 689999999874
No 388
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=50.82 E-value=11 Score=26.31 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=14.7
Q ss_pred EEEEEcCCChhHHHHH----HHHHhcC
Q 034075 15 VVIFSKSSCCICHSIK----TLFCDFG 37 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~----~~L~~~~ 37 (104)
|+..+..|||+|...+ ..|.+.|
T Consensus 62 v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 62 VIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred EEEEecccCccchhhHHHHHHHHHhcC
Confidence 3444557899998544 4456665
No 389
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=49.95 E-value=41 Score=20.08 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=35.4
Q ss_pred ChhHHHHHHHHHhcC-----------CCcEEEEeecC-CCchhHHHHHHhcCCCCCccEEEECCEEEeccH
Q 034075 23 CCICHSIKTLFCDFG-----------VNPAVYELDEM-PGGRELEQDLQRLGCSPAVPAVFIGGELVGGAN 81 (104)
Q Consensus 23 Cp~C~~~~~~L~~~~-----------v~~~~~~vd~~-~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~ 81 (104)
=|.-..+..+++..| -.|...+.+.. -+..++.+.+.+...--.-|.++-+++.+-|+.
T Consensus 35 ~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~~~ls~~e~i~ll~~~P~LikRPIi~~~~~~~vG~~ 105 (112)
T cd03034 35 PPTAAELRELLAKLGISPRDLLRTKEAPYKELGLADPELSDEELIDAMAAHPILIERPIVVTGDGAVLGRP 105 (112)
T ss_pred CcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCccCCCHHHHHHHHHhCcCcccCCEEEECCEEEEcCC
Confidence 334445555555554 34544444422 122335566666666678899999999888874
No 390
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=49.71 E-value=78 Score=23.04 Aligned_cols=48 Identities=10% Similarity=0.317 Sum_probs=32.4
Q ss_pred CCEEEEEcCCC---hhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHh
Q 034075 13 RPVVIFSKSSC---CICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQR 60 (104)
Q Consensus 13 ~~v~vf~~~~C---p~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~ 60 (104)
.++.+.+.+.. +...+++..|++.++++..++ +..++....+.+....
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~ 80 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAV 80 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHH
Confidence 45666665544 567789999999999887664 6666766655555443
No 391
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=49.19 E-value=53 Score=24.20 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE-CCEEEeccHHHHhHH
Q 034075 26 CHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI-GGELVGGANQVMSLH 87 (104)
Q Consensus 26 C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi-~g~~igg~~~~~~~~ 87 (104)
-..++.+|+++++.--.+-+..+..-.++.+.+.. .....|.+++ |....-|.+++..+.
T Consensus 201 ~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~--nrvY~p~l~v~NKiD~~~~e~~~~l~ 261 (365)
T COG1163 201 EDTVRAILREYRIHNADVLIREDVTLDDLIDALEG--NRVYKPALYVVNKIDLPGLEELERLA 261 (365)
T ss_pred HHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhh--cceeeeeEEEEecccccCHHHHHHHH
Confidence 36899999999999877777766666666666643 3468898864 444444455555444
No 392
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=49.16 E-value=99 Score=22.53 Aligned_cols=69 Identities=13% Similarity=0.166 Sum_probs=40.8
Q ss_pred CCEEEEEcCC---ChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHhcCC-CCCccEEEECCEEEeccHH
Q 034075 13 RPVVIFSKSS---CCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQRLGC-SPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 13 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~~~~-~~tvP~ifi~g~~igg~~~ 82 (104)
.++.+.+.+. .++..++...|.+.++.+..++ +..++....+.+.+..... ...+ .|=|+|-.+-+...
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~-IIaiGGGsviD~AK 102 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDV-IIAVGGGSPIDCAK 102 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCE-EEEeCCchHHHHHH
Confidence 4566665543 3567889999999999887664 6556665555555543321 1233 44566654444443
No 393
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.00 E-value=38 Score=20.43 Aligned_cols=40 Identities=10% Similarity=0.066 Sum_probs=32.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchh
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRE 53 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~ 53 (104)
+|.+++.++|.-..-++.+.+..+.++..+.+..+.+..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccccc
Confidence 3789999999999999999999988888888877655433
No 394
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=48.91 E-value=34 Score=21.56 Aligned_cols=57 Identities=14% Similarity=0.282 Sum_probs=33.2
Q ss_pred EEEEcCCChhHHHHHHHHHhcCC------CcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGV------NPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v------~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
+=|+.+|-|.|.+.-.+|.+..- .+-.+|+++-++..+ .. +.+ .+..=..|.+++++
T Consensus 25 iRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~---~y-el~-dP~tvmFF~rnkhm 87 (133)
T PF02966_consen 25 IRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQ---MY-ELY-DPCTVMFFFRNKHM 87 (133)
T ss_dssp EEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHH---HT-TS--SSEEEEEEETTEEE
T ss_pred EEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhc---cc-ccC-CCeEEEEEecCeEE
Confidence 45999999999999999965431 234567776565332 11 122 12221345588876
No 395
>PHA00729 NTP-binding motif containing protein
Probab=48.00 E-value=89 Score=21.46 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=20.8
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcC
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFG 37 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~ 37 (104)
.+++++.|++.-.+-+..+..+.+
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999998888765
No 396
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=47.87 E-value=55 Score=18.99 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeec---------------CCCchhHHHHHHhcCCCCCccEEEECCEEEecc
Q 034075 24 CICHSIKTLFCDFGVNPAVYELDE---------------MPGGRELEQDLQRLGCSPAVPAVFIGGELVGGA 80 (104)
Q Consensus 24 p~C~~~~~~L~~~~v~~~~~~vd~---------------~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~ 80 (104)
-...++++.+++.|+++++.-.+. .|.-....+.+++......+|...|+.+..|-.
T Consensus 14 ~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~~~~~~i~~~~~~~~~pv~~I~~~~Y~~~ 85 (96)
T cd05564 14 ILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVRYMLDEVKKKAAEYGIPVAVIDMMDYGMM 85 (96)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHHHHHHHHHHHhccCCCcEEEcChHhcccC
Confidence 456788888888888865443321 112112233344433447899999988766544
No 397
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=47.67 E-value=56 Score=19.02 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeec---------------CCCchhHHHHHHhcCCCCCccEEEECCEEEecc
Q 034075 24 CICHSIKTLFCDFGVNPAVYELDE---------------MPGGRELEQDLQRLGCSPAVPAVFIGGELVGGA 80 (104)
Q Consensus 24 p~C~~~~~~L~~~~v~~~~~~vd~---------------~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~ 80 (104)
-...++++++++.|+++++.-.+. .|.-....+.+++......+|...|+.+..|-.
T Consensus 18 ~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~m 89 (95)
T TIGR00853 18 LLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVINGAQYGKL 89 (95)
T ss_pred HHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeChhhcccC
Confidence 456788888999999876433321 111111233344444445688888887755543
No 398
>PF15616 TerY-C: TerY-C metal binding domain
Probab=47.62 E-value=5.3 Score=25.11 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=10.5
Q ss_pred EEEcCCChhHHHHHH
Q 034075 17 IFSKSSCCICHSIKT 31 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~ 31 (104)
+...|+||+|-....
T Consensus 74 L~g~PgCP~CGn~~~ 88 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYA 88 (131)
T ss_pred hcCCCCCCCCcChhc
Confidence 345589999976543
No 399
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=47.40 E-value=44 Score=22.89 Aligned_cols=54 Identities=9% Similarity=0.169 Sum_probs=34.6
Q ss_pred EEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECC
Q 034075 16 VIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGG 74 (104)
Q Consensus 16 ~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g 74 (104)
+=.++.+-|.|.-+...|++++..|..+..-..+... .+.. +.....|++||-+
T Consensus 116 vhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~----cIpN-YPe~nlPTl~VY~ 169 (240)
T KOG3170|consen 116 VHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATT----CIPN-YPESNLPTLLVYH 169 (240)
T ss_pred EEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccc----ccCC-CcccCCCeEEEee
Confidence 3356689999999999999999887544332222111 1222 3347899998743
No 400
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.39 E-value=6 Score=29.10 Aligned_cols=16 Identities=13% Similarity=0.546 Sum_probs=12.3
Q ss_pred cCCcHHHHhhcCCccC
Q 034075 89 NRSLIPMLKRVGAIWV 104 (104)
Q Consensus 89 ~g~L~~~L~~~g~~~~ 104 (104)
+.+|..+.+++|+|||
T Consensus 99 s~Dlmr~crk~~vLYi 114 (481)
T COG5310 99 SLDLMRLCRKHGVLYI 114 (481)
T ss_pred hhHHHHHHHHcCeEEE
Confidence 4467788888998885
No 401
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO.
Probab=46.62 E-value=5.5 Score=20.12 Aligned_cols=6 Identities=33% Similarity=1.121 Sum_probs=4.0
Q ss_pred ChhHHH
Q 034075 23 CCICHS 28 (104)
Q Consensus 23 Cp~C~~ 28 (104)
||||..
T Consensus 1 CP~C~~ 6 (43)
T PF03470_consen 1 CPFCPG 6 (43)
T ss_pred CCCCCC
Confidence 777753
No 402
>PRK00766 hypothetical protein; Provisional
Probab=46.45 E-value=40 Score=22.58 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=25.7
Q ss_pred CCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccH
Q 034075 38 VNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGAN 81 (104)
Q Consensus 38 v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~ 81 (104)
+-+..+.+|-.+..+.+.+.+...-..+.+=.|+++|-.+|||+
T Consensus 43 v~~~~itvdG~DaT~~i~~mv~~~~~r~~i~~V~L~Git~agFN 86 (194)
T PRK00766 43 VLSRWITVDGLDATEAIIEMVNSSRHKGQLRVIMLDGITYGGFN 86 (194)
T ss_pred EEEEEEEECCccHHHHHHHHHHhcccccceEEEEECCEeeeeeE
Confidence 33556666655544444444433222246667788888888886
No 403
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=46.44 E-value=55 Score=26.04 Aligned_cols=70 Identities=16% Similarity=0.219 Sum_probs=41.8
Q ss_pred CEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeecC-CCchhHHHHHHhcCCCCCccEEEECCEEEeccHH-HHhHH
Q 034075 14 PVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDEM-PGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQ-VMSLH 87 (104)
Q Consensus 14 ~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~~-~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~-~~~~~ 87 (104)
++++.+. +....|.++...|++.|+..+++|+-.- |-..+....+.+.+ -..|.+.+..+||+.+ +.+..
T Consensus 546 dvtIva~G~~v~~Al~AA~~L~~~GI~v~VId~rsikPlD~~~i~sl~k~~----~~vVt~Ee~~~GG~Gs~Va~~l 618 (641)
T PLN02234 546 RVALLGYGSAVQRCLEAASMLSERGLKITVADARFCKPLDVALIRSLAKSH----EVLITVEEGSIGGFGSHVVQFL 618 (641)
T ss_pred CEEEEEecHHHHHHHHHHHHHHhcCCCEEEEecCCcCCCCHHHHHHHHHhC----CEEEEECCCCCCcHHHHHHHHH
Confidence 4555444 5677899999999999999999998643 32222222222211 1244455555699954 44443
No 404
>PF15379 DUF4606: Domain of unknown function (DUF4606)
Probab=46.43 E-value=19 Score=21.70 Aligned_cols=21 Identities=14% Similarity=0.335 Sum_probs=14.8
Q ss_pred EEEEEcCCChhHHHHHHHHHh
Q 034075 15 VVIFSKSSCCICHSIKTLFCD 35 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~ 35 (104)
..+--.+.||.|.+-+.-|.+
T Consensus 26 ~k~H~~s~Cp~C~kkraeLa~ 46 (104)
T PF15379_consen 26 AKQHNSSQCPSCNKKRAELAQ 46 (104)
T ss_pred ccccCcccChHHHHHHHHHHH
Confidence 444556789999988766643
No 405
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=46.01 E-value=37 Score=20.81 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=18.5
Q ss_pred CCCCCccEEEECCEEE-eccHHHHhH
Q 034075 62 GCSPAVPAVFIGGELV-GGANQVMSL 86 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~i-gg~~~~~~~ 86 (104)
.|..++|.+++|+++| -|-.++...
T Consensus 80 lGi~k~PAVV~D~~~VVYG~~DV~~A 105 (113)
T TIGR03757 80 LGVTKIPAVVVDRRYVVYGETDVARA 105 (113)
T ss_pred cCCccCCEEEEcCCeEEecCccHHHH
Confidence 5679999999999975 566555443
No 406
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=46.00 E-value=91 Score=24.15 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCEEEEEcCCCh-----hHHHHHHHHHhc-----CCCcEEEEeecCCC
Q 034075 2 AMERVAKMASERPVVIFSKSSCC-----ICHSIKTLFCDF-----GVNPAVYELDEMPG 50 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~~~Cp-----~C~~~~~~L~~~-----~v~~~~~~vd~~~~ 50 (104)
+++.++++-++-.|.+|.++.=| +=..++.+|+++ ++.++++|-..+++
T Consensus 39 T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~ 97 (552)
T TIGR03521 39 SKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEED 97 (552)
T ss_pred HHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcch
Confidence 34556666555567778776654 446788888776 46667776555444
No 407
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=45.81 E-value=70 Score=23.46 Aligned_cols=20 Identities=10% Similarity=0.267 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCCcEEEEeec
Q 034075 28 SIKTLFCDFGVNPAVYELDE 47 (104)
Q Consensus 28 ~~~~~L~~~~v~~~~~~vd~ 47 (104)
.+++.|++.|+|+-.+|.+.
T Consensus 342 ~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 342 MLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred HHHHHHHHCCCCEEEEEecC
Confidence 44455555555555555543
No 408
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=45.64 E-value=92 Score=23.73 Aligned_cols=65 Identities=12% Similarity=0.134 Sum_probs=40.9
Q ss_pred CEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeecCCCc--hhHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 14 PVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDEMPGG--RELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 14 ~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~--~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
++++++. +....|.++.+.|.+.|+..+++|+-.-... ..+.+.+++.+ .+ .++-++...||+..
T Consensus 342 DvtIva~G~~v~~Al~Aa~~L~~~GI~~~VIdl~tlkPlD~~~i~~sv~kt~---~v-vtvEE~~~~gGlG~ 409 (464)
T PRK11892 342 DVTIVSFSIGMTYALKAAEELAKEGIDAEVIDLRTIRPMDTETIVESVKKTN---RL-VTVEEGWPQSGVGA 409 (464)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCCHHHHHHHHHhcC---eE-EEEeCCCcCCcHHH
Confidence 4555444 5688899999999999999999998654322 22444443221 23 34455566677754
No 409
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=45.57 E-value=66 Score=19.26 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=24.9
Q ss_pred HHHHHhcCCCEEEEEcCCChhHH----HHHHHHHhcCCCcEEEEee
Q 034075 5 RVAKMASERPVVIFSKSSCCICH----SIKTLFCDFGVNPAVYELD 46 (104)
Q Consensus 5 ~~~~~~~~~~v~vf~~~~Cp~C~----~~~~~L~~~~v~~~~~~vd 46 (104)
.++++....+|++++ ..++++. .+..+|++...+...+++.
T Consensus 79 ~l~~l~~~~~I~iW~-~~~~~dq~gl~~~l~~L~~~~~~I~~v~~t 123 (124)
T PF08874_consen 79 RLEELPEDDPIVIWY-GDNAYDQLGLRYLLSLLKDKPNRIYVVNVT 123 (124)
T ss_pred HHHhCCCCCEEEEEe-CCCHHHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 345555555566655 4577775 5555667667677777664
No 410
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=45.48 E-value=46 Score=19.36 Aligned_cols=29 Identities=21% Similarity=0.091 Sum_probs=21.4
Q ss_pred hhHHHHHHhcCCCCCccEEEECCEEEecc
Q 034075 52 RELEQDLQRLGCSPAVPAVFIGGELVGGA 80 (104)
Q Consensus 52 ~~~~~~l~~~~~~~tvP~ifi~g~~igg~ 80 (104)
.++.+.+.+....-.-|.++-+++.+-|+
T Consensus 77 ~e~~~~l~~~p~LikRPii~~~~~~~iG~ 105 (105)
T cd02977 77 EEALELMAEHPKLIKRPIVVDGDRLLVGF 105 (105)
T ss_pred HHHHHHHHhCcCeeeCCEEEECCEEEecC
Confidence 44666677777668889999988876664
No 411
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=45.40 E-value=25 Score=24.66 Aligned_cols=23 Identities=13% Similarity=0.192 Sum_probs=19.4
Q ss_pred EEEcCCChhHHHHHHHHHh-cCCC
Q 034075 17 IFSKSSCCICHSIKTLFCD-FGVN 39 (104)
Q Consensus 17 vf~~~~Cp~C~~~~~~L~~-~~v~ 39 (104)
++-+..||.++++++.|++ +|++
T Consensus 169 i~~t~~~pla~~~R~~lr~~~~~~ 192 (268)
T PRK15116 169 LAKTIQDPLAAKLRERLKSDFGVV 192 (268)
T ss_pred eecccCChHHHHHHHHHHHhhCCC
Confidence 4556789999999999998 7876
No 412
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=45.39 E-value=13 Score=19.94 Aligned_cols=13 Identities=23% Similarity=0.490 Sum_probs=10.0
Q ss_pred CCChhHHHHHHHH
Q 034075 21 SSCCICHSIKTLF 33 (104)
Q Consensus 21 ~~Cp~C~~~~~~L 33 (104)
|-||.|+++-.-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 5699999886544
No 413
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=45.12 E-value=66 Score=19.17 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=38.5
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeec--C--------CC----chh---HHHHHHhcCCCCCccEEEECCEEEe----ccHH
Q 034075 24 CICHSIKTLFCDFGVNPAVYELDE--M--------PG----GRE---LEQDLQRLGCSPAVPAVFIGGELVG----GANQ 82 (104)
Q Consensus 24 p~C~~~~~~L~~~~v~~~~~~vd~--~--------~~----~~~---~~~~l~~~~~~~tvP~ifi~g~~ig----g~~~ 82 (104)
-...++++++++.|++++..-.+. . .+ +.+ ..+.+++......+|...|+....| |.+.
T Consensus 16 lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~ipv~~I~~~~Y~~~~~~~~~ 95 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVGKPVVQIPPQAYIPIPMGIEK 95 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcCCCEEEeCHHHcCCCccCHHH
Confidence 556788888999999876532221 1 00 112 2334444444467999999998776 3445
Q ss_pred HHhHHH
Q 034075 83 VMSLHL 88 (104)
Q Consensus 83 ~~~~~~ 88 (104)
+.++.+
T Consensus 96 ~~~~~~ 101 (104)
T PRK09590 96 MAKLIL 101 (104)
T ss_pred HHHHHH
Confidence 554443
No 414
>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated
Probab=45.09 E-value=90 Score=22.48 Aligned_cols=65 Identities=11% Similarity=0.176 Sum_probs=39.7
Q ss_pred CEEEEE-cCCChhHHHHHHHHHhcCCCcEEEEeecCCCc--hhHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 14 PVVIFS-KSSCCICHSIKTLFCDFGVNPAVYELDEMPGG--RELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 14 ~v~vf~-~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~--~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
++++.+ .+....|.++...|++.|++.+++|+-.-... +.+.+.+++.+ .+ .++-++...||+.+
T Consensus 203 ditiia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~ikPlD~~~i~~~~~~t~---~v-v~vEE~~~~gGlG~ 270 (327)
T CHL00144 203 DITILTYSRMRHHVLQAVKVLVEKGYDPEIIDLISLKPLDLGTISKSVKKTH---KV-LIVEECMKTGGIGA 270 (327)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEecCcCCCCCHHHHHHHHHhhC---cE-EEEECCCCCCCHHH
Confidence 454433 35678899999999999999999998654222 22334333221 12 23345555688854
No 415
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=44.66 E-value=37 Score=23.02 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCcEEEEeecCCCc--hhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcCCcHHHHhhcC
Q 034075 28 SIKTLFCDFGVNPAVYELDEMPGG--RELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRVG 100 (104)
Q Consensus 28 ~~~~~L~~~~v~~~~~~vd~~~~~--~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~~L~~~g 100 (104)
.+..||++-.|+..-+| ..|.. .-+++.|+-.-.-.|-|.+..-+++-||+|--....--.-|..+..+.|
T Consensus 130 ~a~~WL~~VEI~~~RiD--D~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~ 202 (258)
T COG4107 130 EAQDWLEEVEIDLDRID--DLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELG 202 (258)
T ss_pred HHHHHHHhcccCccccc--CcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcC
Confidence 56677777655544333 22221 1155555544445788999999999999986444332223333444444
No 416
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=44.33 E-value=17 Score=21.32 Aligned_cols=37 Identities=11% Similarity=0.032 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCc
Q 034075 3 MERVAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNP 40 (104)
Q Consensus 3 ~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~ 40 (104)
++.+++.... .+..|..|...+-..+.+++.+.|.+|
T Consensus 86 ~~~l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 86 REILEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 3445555544 677788888888888888888888765
No 417
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=44.26 E-value=36 Score=20.52 Aligned_cols=31 Identities=13% Similarity=0.001 Sum_probs=23.2
Q ss_pred hhHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 52 RELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 52 ~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
.++.+.+.+...-..-|.|.-+|+.+-|+++
T Consensus 75 ~e~~~ll~~~P~LikRPIv~~~~~~~vG~~~ 105 (113)
T cd03033 75 EEALALMIADPLLIRRPLMQVGDRRMVGFDT 105 (113)
T ss_pred HHHHHHHHhCcceeeCCeEEECCEEEecCCH
Confidence 3455666666666788999989998888864
No 418
>PLN02590 probable tyrosine decarboxylase
Probab=43.93 E-value=1.5e+02 Score=23.03 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=47.6
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCC---cEEEEeecCC----CchhHHHHHHhcCCCCCccEEEE---CCEEEeccHH
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFGVN---PAVYELDEMP----GGRELEQDLQRLGCSPAVPAVFI---GGELVGGANQ 82 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~---~~~~~vd~~~----~~~~~~~~l~~~~~~~tvP~ifi---~g~~igg~~~ 82 (104)
.++++|.+..+.+|. .+.+.-.|+. ...+.+|... +...+++++.+.......|.+++ +-...|.+|+
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp 305 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP 305 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC
Confidence 468999999999985 4444555553 5556666322 33446677765433345776654 3445677787
Q ss_pred HHhHHHcCCcHHHHhhcC
Q 034075 83 VMSLHLNRSLIPMLKRVG 100 (104)
Q Consensus 83 ~~~~~~~g~L~~~L~~~g 100 (104)
+.++. ++.++.|
T Consensus 306 l~~Ia------~i~~~~g 317 (539)
T PLN02590 306 LVPLG------NIAKKYG 317 (539)
T ss_pred HHHHH------HHHHHhC
Confidence 76543 3445555
No 419
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=43.69 E-value=19 Score=21.77 Aligned_cols=14 Identities=36% Similarity=0.895 Sum_probs=7.1
Q ss_pred CEEEEEcC---CChhHH
Q 034075 14 PVVIFSKS---SCCICH 27 (104)
Q Consensus 14 ~v~vf~~~---~Cp~C~ 27 (104)
.+++|+.. .|+||.
T Consensus 7 ~~~~~t~~Cnl~C~yC~ 23 (139)
T PF13353_consen 7 RVVLFTNGCNLRCKYCF 23 (139)
T ss_dssp EEEEEEC--SB--TT-T
T ss_pred EEEEEcCcccccCcCcC
Confidence 46788663 599994
No 420
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=43.13 E-value=21 Score=24.43 Aligned_cols=17 Identities=12% Similarity=0.458 Sum_probs=14.4
Q ss_pred CEEEEEcCCChhHHHHH
Q 034075 14 PVVIFSKSSCCICHSIK 30 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~ 30 (104)
.|++|+-+-||+|.+..
T Consensus 42 ~ItlyyEaLCPdc~~Fi 58 (220)
T KOG3160|consen 42 NITLYYEALCPDCSKFI 58 (220)
T ss_pred EEEEEEEecCccHHHHH
Confidence 48999999999998643
No 421
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=43.11 E-value=89 Score=22.83 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=40.9
Q ss_pred CEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeecCCCch--hHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 14 PVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDEMPGGR--ELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 14 ~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~--~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
++++.+. +....|.++.+.|.+.|++.+++|+..-...+ .+.+.+++. ..+ .++-++...||+.+
T Consensus 230 dvtIia~G~~v~~Al~Aa~~L~~~GI~v~VId~~~ikPlD~~~l~~~~~~t---~~v-vtvEE~~~~GGlGs 297 (356)
T PLN02683 230 DVTIVAFSKMVGYALKAAEILAKEGISAEVINLRSIRPLDRDTINASVRKT---NRL-VTVEEGWPQHGVGA 297 (356)
T ss_pred CEEEEEccHHHHHHHHHHHHHHhcCCCEEEEECCCCCccCHHHHHHHHhhc---CeE-EEEeCCCcCCCHHH
Confidence 5555444 56788889999999999999999986543222 233333322 223 33445556788864
No 422
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=43.10 E-value=64 Score=20.16 Aligned_cols=23 Identities=9% Similarity=-0.009 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCCcEEEEeecCCC
Q 034075 28 SIKTLFCDFGVNPAVYELDEMPG 50 (104)
Q Consensus 28 ~~~~~L~~~~v~~~~~~vd~~~~ 50 (104)
.+..+|++.+++|+.++.+..+.
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~~ 25 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDED 25 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCCC
Confidence 46788999999999999876543
No 423
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=43.03 E-value=56 Score=22.08 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=21.8
Q ss_pred EEEeec-CCCchhHHHHHHhcCCCCCccEEEECCE
Q 034075 42 VYELDE-MPGGRELEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 42 ~~~vd~-~~~~~~~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
..|+-. .-.+-+++..|.+.+ .++|.||+-|+
T Consensus 53 llDvrMPg~sGlelq~~L~~~~--~~~PVIfiTGh 85 (202)
T COG4566 53 LLDVRMPGMSGLELQDRLAERG--IRLPVIFLTGH 85 (202)
T ss_pred EEecCCCCCchHHHHHHHHhcC--CCCCEEEEeCC
Confidence 445432 234566888887653 68999999997
No 424
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=42.60 E-value=46 Score=20.23 Aligned_cols=40 Identities=10% Similarity=0.060 Sum_probs=31.3
Q ss_pred CHHHHHHHHhc---CCCEEEEEc-----CCChhHHHHHHHHHhcCCCc
Q 034075 1 MAMERVAKMAS---ERPVVIFSK-----SSCCICHSIKTLFCDFGVNP 40 (104)
Q Consensus 1 ~a~~~~~~~~~---~~~v~vf~~-----~~Cp~C~~~~~~L~~~~v~~ 40 (104)
||...+++++. ...+.++|. +.-|.-..+.+.|++.|++.
T Consensus 14 mAEai~~~~~~~~~~~~~~v~SAG~~~~~~~~~~~~a~~~l~~~gid~ 61 (138)
T PF01451_consen 14 MAEAILRHLLKQRLGDRFEVESAGTEAWPGEPVDPRAIAVLKEHGIDI 61 (138)
T ss_dssp HHHHHHHHHHHHTHTTTEEEEEEESSSTTTSSSTHHHHHHHHHTTSSC
T ss_pred HHHHHHHHhccccccCCcEEEEEeecccccccccchHHHHHHHhCCCc
Confidence 67777777754 347888888 46788889999999999874
No 425
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=42.52 E-value=27 Score=19.37 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=13.2
Q ss_pred cCCChhHH-HHHHHHHhcCC
Q 034075 20 KSSCCICH-SIKTLFCDFGV 38 (104)
Q Consensus 20 ~~~Cp~C~-~~~~~L~~~~v 38 (104)
+=-||.|+ .++..+++.+|
T Consensus 15 tLPC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 15 TLPCPECRIHAKEAIQKNNI 34 (70)
T ss_pred cCCCHHHHHHHHHHHHhcCc
Confidence 34699998 57777766554
No 426
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=42.43 E-value=94 Score=25.12 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=39.9
Q ss_pred CEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeecCCCc-hh-HHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 14 PVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDEMPGG-RE-LEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 14 ~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~-~~-~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
++++.+. +..+.|.++...|++.|+..+++|+-.-... .+ +.+.+++ +=..+.+....+||+.+
T Consensus 569 dvtIia~G~mv~~Al~AA~~L~~~GI~vtVIdlr~ikPLD~e~I~~~~~k-----~~~vVTvEE~~~GG~Gs 635 (701)
T PLN02225 569 DVALLGYGAMVQNCLHAHSLLSKLGLNVTVADARFCKPLDIKLVRDLCQN-----HKFLITVEEGCVGGFGS 635 (701)
T ss_pred CEEEEeccHHHHHHHHHHHHHHhcCCCEEEEecCCCCCCCHHHHHHHHhh-----cCeEEEEcCCCCCchHH
Confidence 4555444 5678899999999999999999998553222 22 3333322 22245555555688864
No 427
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=42.11 E-value=71 Score=22.51 Aligned_cols=40 Identities=13% Similarity=0.167 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCEEEEEcCCC-hhHHHHHHHHHhcCCCcE
Q 034075 2 AMERVAKMASERPVVIFSKSSC-CICHSIKTLFCDFGVNPA 41 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~~~C-p~C~~~~~~L~~~~v~~~ 41 (104)
+.+..+++++..+|.++..+.| +.|..+..++++.++++-
T Consensus 58 a~~~~~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i 98 (347)
T cd06340 58 GATEAERLITEEGVVALVGAYQSAVTLAASQVAERYGVPFV 98 (347)
T ss_pred HHHHHHHHhccCCceEEecccchHhHHHHHHHHHHhCCCEE
Confidence 4566778888877776666666 568888999999998864
No 428
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=41.63 E-value=1.3e+02 Score=21.69 Aligned_cols=77 Identities=14% Similarity=0.320 Sum_probs=43.3
Q ss_pred HHHHHHhcC---CCEEEEEcCCChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHhcCC-CCCccEEEECCEEEe
Q 034075 4 ERVAKMASE---RPVVIFSKSSCCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQRLGC-SPAVPAVFIGGELVG 78 (104)
Q Consensus 4 ~~~~~~~~~---~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~~~~-~~tvP~ifi~g~~ig 78 (104)
+.+.+.+.+ .++.+.+.+....-..+...|++.++.+.+++ +..++....+.+.....-. ...+ .|-|+|-.+-
T Consensus 12 ~~l~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~-IIavGGGs~~ 90 (367)
T cd08182 12 AKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDA-VLAVGGGSVL 90 (367)
T ss_pred HHHHHHHHhcCCCeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCE-EEEeCCcHHH
Confidence 344444443 46777776665556678888998888776654 6666665555554433211 1222 3446664443
Q ss_pred ccH
Q 034075 79 GAN 81 (104)
Q Consensus 79 g~~ 81 (104)
+..
T Consensus 91 D~a 93 (367)
T cd08182 91 DTA 93 (367)
T ss_pred HHH
Confidence 333
No 429
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=41.42 E-value=1.4e+02 Score=21.82 Aligned_cols=47 Identities=11% Similarity=0.369 Sum_probs=31.9
Q ss_pred CCEEEEEcCC---ChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHH
Q 034075 13 RPVVIFSKSS---CCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQ 59 (104)
Q Consensus 13 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~ 59 (104)
.++.|.+.+. .+...+++..|++.|+++.+++ +..++....+.+.+.
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~ 81 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVE 81 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHH
Confidence 4566655543 4678889999999999987774 666666555554443
No 430
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=40.95 E-value=1.7e+02 Score=22.65 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=40.3
Q ss_pred CCCcEEEEeecCCCchhHHHHHHhcC------------CCCCccEEEECCEEE------------eccHHHHhHHHcCCc
Q 034075 37 GVNPAVYELDEMPGGRELEQDLQRLG------------CSPAVPAVFIGGELV------------GGANQVMSLHLNRSL 92 (104)
Q Consensus 37 ~v~~~~~~vd~~~~~~~~~~~l~~~~------------~~~tvP~ifi~g~~i------------gg~~~~~~~~~~g~L 92 (104)
++++..+-..+.....+.++.|++.. .+.++|.+-.+|+.+ |.-+-...|+.+|-|
T Consensus 175 ~~~IPl~IMTS~~T~~~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~L 254 (493)
T PLN02435 175 PVTIHWYIMTSPFTDEATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLL 254 (493)
T ss_pred CCceeEEEeCCcchhHHHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcH
Confidence 45556565565666666777787542 235677776666432 333446677777877
Q ss_pred HHHHhhcCCcc
Q 034075 93 IPMLKRVGAIW 103 (104)
Q Consensus 93 ~~~L~~~g~~~ 103 (104)
+++ .+.|.-|
T Consensus 255 d~l-~~~Gi~y 264 (493)
T PLN02435 255 EDM-ASRGIKY 264 (493)
T ss_pred HHH-HhcCCEE
Confidence 775 5666655
No 431
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=40.29 E-value=9.4 Score=24.39 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=10.6
Q ss_pred CChhHHHHHHHH
Q 034075 22 SCCICHSIKTLF 33 (104)
Q Consensus 22 ~Cp~C~~~~~~L 33 (104)
.||+|++....|
T Consensus 11 ~CPhCRQ~ipAL 22 (163)
T TIGR02652 11 RCPHCRQNIPAL 22 (163)
T ss_pred cCchhhcccchh
Confidence 699999988877
No 432
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=40.15 E-value=80 Score=18.67 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=32.1
Q ss_pred hHHHHHHHHHhcCCCcEEEEeec---------------CCCchhHHHHHHhcCCCCCccEEEECCEEEe
Q 034075 25 ICHSIKTLFCDFGVNPAVYELDE---------------MPGGRELEQDLQRLGCSPAVPAVFIGGELVG 78 (104)
Q Consensus 25 ~C~~~~~~L~~~~v~~~~~~vd~---------------~~~~~~~~~~l~~~~~~~tvP~ifi~g~~ig 78 (104)
...++++++++.|+++++.-... .|.-+-..+.+++......+|...|+.+.-|
T Consensus 16 la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~~~Yg 84 (99)
T cd05565 16 LANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTGKQYI 84 (99)
T ss_pred HHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCHHHHh
Confidence 45688888999998876543221 1111223334444444467899999866544
No 433
>PF09369 DUF1998: Domain of unknown function (DUF1998); InterPro: IPR018973 This entry represents a family of DEAD/DEAH-box-containing family of helicases. It includes Hrq1 from Saccharomyces, a putative RecQ helicase []. RecQ helicases are involved in maintaining genomic integrity.
Probab=40.07 E-value=15 Score=20.69 Aligned_cols=36 Identities=22% Similarity=0.382 Sum_probs=28.9
Q ss_pred CCCccEEEECCEEEeccHHHHhHHHcCCcHHHHhhc
Q 034075 64 SPAVPAVFIGGELVGGANQVMSLHLNRSLIPMLKRV 99 (104)
Q Consensus 64 ~~tvP~ifi~g~~igg~~~~~~~~~~g~L~~~L~~~ 99 (104)
....|.||+=+..-||.--+..+++...+.++|+++
T Consensus 32 ~~~~~~i~lyD~~~GG~G~~~~l~~~~~~~~ll~~A 67 (84)
T PF09369_consen 32 RQGPPRIFLYDTVPGGAGYAERLFERERFEELLRRA 67 (84)
T ss_pred CCCccEEEEEECCCCchhhHhhhcChhHHHHHHHHH
Confidence 367889999999999888888887776788888653
No 434
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=39.69 E-value=9.3 Score=24.35 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=10.6
Q ss_pred CChhHHHHHHHH
Q 034075 22 SCCICHSIKTLF 33 (104)
Q Consensus 22 ~Cp~C~~~~~~L 33 (104)
.||+|++....|
T Consensus 8 ~CPhCRq~ipAL 19 (161)
T PF09654_consen 8 QCPHCRQTIPAL 19 (161)
T ss_pred cCchhhcccchh
Confidence 699999988877
No 435
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=39.60 E-value=1.3e+02 Score=24.22 Aligned_cols=66 Identities=12% Similarity=0.150 Sum_probs=39.1
Q ss_pred CEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 14 PVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 14 ~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
++++.+. +....|.++.+.|.+.|+..+++|+-.-....+ +.+..... .+-..+.+.+...||+.+
T Consensus 545 dvtIva~G~~v~~Al~Aa~~L~~~GI~~~VId~~~lkPlD~--~~i~~~~k-~~~~vVtvEe~~~GG~Gs 611 (677)
T PLN02582 545 RVALLGYGTAVQSCLAAASLLERHGLSATVADARFCKPLDR--ALIRSLAK-SHEVLITVEEGSIGGFGS 611 (677)
T ss_pred CEEEEeecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCCCH--HHHHHHhh-hCCEEEEECCCCCCcHHH
Confidence 4554443 556788899999999999999999865422222 12222211 111245555555588865
No 436
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=39.57 E-value=1.3e+02 Score=20.84 Aligned_cols=69 Identities=13% Similarity=0.003 Sum_probs=42.2
Q ss_pred HHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchh-HHHHHHhcCCCCCccEEEECCE
Q 034075 6 VAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRE-LEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 6 ~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~-~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
+++.+...+. +|+.-..-.+..+-.++...|.+|..+|.++.+-..+ +...+.........|.+-+-+.
T Consensus 3 lk~~l~~g~~-~~G~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~ 72 (249)
T TIGR03239 3 FRQDLLARET-LIGCWSALGNPITTEVLGLAGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWN 72 (249)
T ss_pred HHHHHHcCCc-eEEEEEcCCCcHHHHHHHhcCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 4455545543 2222223344577888889999999999998765433 5555544444456777777543
No 437
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=39.45 E-value=1.6e+02 Score=21.81 Aligned_cols=47 Identities=6% Similarity=0.106 Sum_probs=32.4
Q ss_pred CCEEEEEcCC---ChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHH
Q 034075 13 RPVVIFSKSS---CCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQ 59 (104)
Q Consensus 13 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~ 59 (104)
.++.+++.+. .+...++...|++.|+.+.+.+ +..+|....+.+.++
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~ 100 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVA 100 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHH
Confidence 4566665543 5677899999999999988774 665666665555544
No 438
>PRK08557 hypothetical protein; Provisional
Probab=39.01 E-value=1.7e+02 Score=22.06 Aligned_cols=73 Identities=10% Similarity=-0.099 Sum_probs=45.6
Q ss_pred HHHHHHHHhcC----CCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECC
Q 034075 2 AMERVAKMASE----RPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGG 74 (104)
Q Consensus 2 a~~~~~~~~~~----~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g 74 (104)
|.+.+++.... +..++.+-++-..|..+..++.+.+.++..+-+|..-+..+..+.+.+......+|...+.+
T Consensus 166 ai~~i~~~~~~~~~~~~~i~vsfSGGKDS~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~i~v~~~ 242 (417)
T PRK08557 166 SLSILKDYIEKYKNKGYAINASFSGGKDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLNLDTLDG 242 (417)
T ss_pred HHHHHHHHHHHcCCCCcEEEEEcCCcHHHHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 45566665542 23566667788889888888888777777777776555444434444333233477776654
No 439
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=38.74 E-value=35 Score=24.60 Aligned_cols=30 Identities=7% Similarity=0.070 Sum_probs=20.4
Q ss_pred EEcCCChhHHHHHHHHHhcC-----CCcEEEEeec
Q 034075 18 FSKSSCCICHSIKTLFCDFG-----VNPAVYELDE 47 (104)
Q Consensus 18 f~~~~Cp~C~~~~~~L~~~~-----v~~~~~~vd~ 47 (104)
...-+|..|++++.+|+... +.|.-+||+.
T Consensus 80 lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 80 LVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred EEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 33568999999999887652 3455555553
No 440
>CHL00195 ycf46 Ycf46; Provisional
Probab=38.71 E-value=97 Score=23.77 Aligned_cols=34 Identities=9% Similarity=0.126 Sum_probs=30.2
Q ss_pred CCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEee
Q 034075 13 RPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELD 46 (104)
Q Consensus 13 ~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd 46 (104)
..|.+|+-|+|.-..-++.+-.+.+.++..++..
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~ 293 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVG 293 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhH
Confidence 3599999999999999999999999998877764
No 441
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=38.67 E-value=18 Score=19.74 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=18.4
Q ss_pred CCCCCccEEEECCEEEeccHHH-HhHHHcCCcHHHHhh
Q 034075 62 GCSPAVPAVFIGGELVGGANQV-MSLHLNRSLIPMLKR 98 (104)
Q Consensus 62 ~~~~tvP~ifi~g~~igg~~~~-~~~~~~g~L~~~L~~ 98 (104)
.|...+|.| |||.|-+ ...-++-+|++||++
T Consensus 13 pGa~~lP~I------IGGSDLi~h~~~knseleeWl~~ 44 (65)
T PF08599_consen 13 PGAGGLPHI------IGGSDLIAHHAGKNSELEEWLRQ 44 (65)
T ss_pred CCCCCCCee------ecchhhhhccccccccHHHHHHH
Confidence 444567754 5666532 233455678888865
No 442
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=38.64 E-value=82 Score=24.92 Aligned_cols=67 Identities=15% Similarity=0.305 Sum_probs=42.5
Q ss_pred CEEEEEcCCC---hhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 14 PVVIFSKSSC---CICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 14 ~v~vf~~~~C---p~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
+|.|++...| -.|+-...+|+.-.|+|..+-|..-.+ ++..+.+....... .|+|| .||.-++.++.
T Consensus 1 ~Vli~v~~dvDalcA~kiL~~Llk~d~I~~~l~PV~gy~e---l~~~~~~~~~~~~~-vilIn---cGa~~dl~~~l 70 (622)
T PF02724_consen 1 SVLILVALDVDALCACKILTSLLKSDNIQYSLVPVSGYSE---LERAYEELDEDIKS-VILIN---CGATVDLEEFL 70 (622)
T ss_pred CEEEEEcCChHHHHHHHHHHHHHHhcCCCeeEEEeCCHHH---HHHHHHHHhhhhce-EEEEe---cCchhhHHHHh
Confidence 3666766542 257788888899999999999985544 55555555322222 66676 35555555543
No 443
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=38.63 E-value=70 Score=21.36 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=30.7
Q ss_pred CCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccH--HHHhHH
Q 034075 37 GVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGAN--QVMSLH 87 (104)
Q Consensus 37 ~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~--~~~~~~ 87 (104)
++.+..+.+|-.+....+.+......- ..+-.|+.+|-..+||. ++.++|
T Consensus 41 gv~~~~i~vDG~D~T~~i~~~v~~~~~-~~~rvVlLdGIt~aGFNivDi~~l~ 92 (185)
T COG1628 41 GVAFSLITVDGLDVTDAISDMVNRSKR-RDLRVVLLDGITFAGFNIVDIEALY 92 (185)
T ss_pred eeEEEEEEecCchHHHHHHHHHHHhhc-ccccEEEECCeeeccceEecHHHHH
Confidence 345667777765544444444444333 33778889999888886 444544
No 444
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=38.44 E-value=1e+02 Score=20.44 Aligned_cols=61 Identities=15% Similarity=0.168 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCC-cEEEEeecCCC-chhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcC
Q 034075 28 SIKTLFCDFGVN-PAVYELDEMPG-GRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNR 90 (104)
Q Consensus 28 ~~~~~L~~~~v~-~~~~~vd~~~~-~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g 90 (104)
.+.+.+.+.|++ ..++|++.... .....+.+++......+|.+.-+| |...+++.++.+.|
T Consensus 33 ~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~Gg--I~~~e~~~~~~~~G 95 (234)
T cd04732 33 EVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGG--IRSLEDIERLLDLG 95 (234)
T ss_pred HHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCC--cCCHHHHHHHHHcC
Confidence 344446667876 45556654322 111122333332223588777666 66777787777766
No 445
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.44 E-value=35 Score=22.96 Aligned_cols=34 Identities=35% Similarity=0.699 Sum_probs=23.0
Q ss_pred HHHHhcCCC-EEEEEc-CCChhHHHH-------HHHHHhcCCC
Q 034075 6 VAKMASERP-VVIFSK-SSCCICHSI-------KTLFCDFGVN 39 (104)
Q Consensus 6 ~~~~~~~~~-v~vf~~-~~Cp~C~~~-------~~~L~~~~v~ 39 (104)
+.+++++++ +|+|.+ +.|--|++. +.+|++.|+.
T Consensus 44 ~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~ 86 (197)
T KOG4498|consen 44 VTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVV 86 (197)
T ss_pred hHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCE
Confidence 456777776 455554 899999965 4556677765
No 446
>cd07973 Spt4 Transcription elongation factor Spt4. Spt4 is a transcription elongation factor. Three transcription-elongation factors Spt4, Spt5, and Spt6, are conserved among eukaryotes and are essential for transcription via the modulation of chromatin structure. It is known that Spt4, Spt5, and Spt6 are general transcription-elongation factors, controlling transcription both positively and negatively in important regulatory and developmental roles. Spt4 functions entirely in the context of the Spt4-Spt5 heterodimer and it has been found only as a complex to Spt5 in Yeast and Human. Spt4 is a small protein that has zinc finger at the N-terminus. Spt5 is a large protein that has several interesting structural features of an acidic N-terminus, a single NGN domain, five or six KOW domains, and a set of simple C-termianl repeats. Spt4 binds to Spt5 NGN domain. Unlike Spt5, Spt4 is not essential for viability in yeast, however Spt4 is critical for normal function of the Spt4-Spt5 compl
Probab=38.39 E-value=41 Score=20.02 Aligned_cols=12 Identities=25% Similarity=0.777 Sum_probs=9.2
Q ss_pred EEcCCChhHHHH
Q 034075 18 FSKSSCCICHSI 29 (104)
Q Consensus 18 f~~~~Cp~C~~~ 29 (104)
|...+||.|..+
T Consensus 18 f~~~gCpnC~~~ 29 (98)
T cd07973 18 FERDGCPNCEGY 29 (98)
T ss_pred ccCCCCCCCcch
Confidence 666899999743
No 447
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=38.37 E-value=29 Score=20.75 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=13.1
Q ss_pred CCccEEEECCEEEeccH
Q 034075 65 PAVPAVFIGGELVGGAN 81 (104)
Q Consensus 65 ~tvP~ifi~g~~igg~~ 81 (104)
...=++||||.++|.+-
T Consensus 62 ~~~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 62 AFRASVWVNGWFLGSYW 78 (111)
T ss_dssp TEEEEEEETTEEEEEEE
T ss_pred ceEEEEEECCEEeeeec
Confidence 44448999999999763
No 448
>PRK02935 hypothetical protein; Provisional
Probab=38.37 E-value=6.6 Score=23.76 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=13.1
Q ss_pred CChhHHHHHHHHHhc
Q 034075 22 SCCICHSIKTLFCDF 36 (104)
Q Consensus 22 ~Cp~C~~~~~~L~~~ 36 (104)
+||.|.+..+.|-+-
T Consensus 72 ~CP~C~K~TKmLGrv 86 (110)
T PRK02935 72 ICPSCEKPTKMLGRV 86 (110)
T ss_pred ECCCCCchhhhccce
Confidence 799999999999654
No 449
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=38.15 E-value=1.2e+02 Score=20.07 Aligned_cols=51 Identities=12% Similarity=0.252 Sum_probs=32.0
Q ss_pred ChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhc-----CCCCCccEEEEC
Q 034075 23 CCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRL-----GCSPAVPAVFIG 73 (104)
Q Consensus 23 Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~-----~~~~tvP~ifi~ 73 (104)
|--=..+-.+|.+....+..+|+..+.+.+++++.+... .+++.+|.+++.
T Consensus 45 ~~le~~~a~~ia~~~a~~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~ 100 (178)
T PF14606_consen 45 GKLEPEVADLIAEIDADLIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVS 100 (178)
T ss_dssp CS--HHHHHHHHHS--SEEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE
T ss_pred cccCHHHHHHHhcCCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 433346677888888888888887666655555554432 678999999996
No 450
>PLN02907 glutamate-tRNA ligase
Probab=38.09 E-value=2.2e+02 Score=23.14 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=37.0
Q ss_pred EEEEEcCC-ChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE-CCEEEeccHHHHhHH
Q 034075 15 VVIFSKSS-CCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI-GGELVGGANQVMSLH 87 (104)
Q Consensus 15 v~vf~~~~-Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi-~g~~igg~~~~~~~~ 87 (104)
+.+|+.+. ||+ .+..+|...|++|+.++. ....++|++.. +|..+-+...+..+.
T Consensus 3 ~kLy~~~~S~~~--~v~~~L~~lgv~~e~~~~----------------~p~GkVPvLv~ddG~~L~ES~AIl~YL 59 (722)
T PLN02907 3 AKLSFPPDSPPL--AVIAAAKVAGVPLTIDPS----------------LKSGSAPTLLFSSGEKLTGTNVLLRYI 59 (722)
T ss_pred EEEEECCCCChH--HHHHHHHHcCCCcEEeec----------------CCCCCCcEEEECCCCEEECHHHHHHHH
Confidence 56777765 444 367778999999988651 12467999886 677777666555543
No 451
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=37.90 E-value=41 Score=20.93 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=17.7
Q ss_pred HHHHHHHHhcCCCcEEEEeec
Q 034075 27 HSIKTLFCDFGVNPAVYELDE 47 (104)
Q Consensus 27 ~~~~~~L~~~~v~~~~~~vd~ 47 (104)
.++.++|++.+++|+.+..+.
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~ 22 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPE 22 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCC
Confidence 367889999999999888874
No 452
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=37.75 E-value=1.6e+02 Score=21.33 Aligned_cols=68 Identities=10% Similarity=0.214 Sum_probs=40.8
Q ss_pred CCEEEEEcC---CChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHhcCCC-CCccEEEECCEEEeccH
Q 034075 13 RPVVIFSKS---SCCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQRLGCS-PAVPAVFIGGELVGGAN 81 (104)
Q Consensus 13 ~~v~vf~~~---~Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~~~~~-~tvP~ifi~g~~igg~~ 81 (104)
.++.+.+.+ ..++..++...|.+.++.+.+++ +..++....+.+.+...... ... .|-|+|--+-+..
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~-IiaiGGGs~~D~A 96 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDG-VIAVGGGSVLDTA 96 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCE-EEEeCCchHHHHH
Confidence 355555543 24788899999999999887664 66667766666655444211 222 4446665443333
No 453
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=37.55 E-value=33 Score=17.39 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=12.8
Q ss_pred CCccEEEECCEEEecc
Q 034075 65 PAVPAVFIGGELVGGA 80 (104)
Q Consensus 65 ~tvP~ifi~g~~igg~ 80 (104)
..++.+||||+.+-.-
T Consensus 18 ~GI~~V~VNG~~vv~~ 33 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVED 33 (48)
T ss_dssp BSEEEEEETTEEEECT
T ss_pred CCEEEEEECCEEEEEC
Confidence 5689999999987543
No 454
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=37.00 E-value=45 Score=19.84 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.1
Q ss_pred CCccEEE-ECCEEEeccHHHHhHHHc
Q 034075 65 PAVPAVF-IGGELVGGANQVMSLHLN 89 (104)
Q Consensus 65 ~tvP~if-i~g~~igg~~~~~~~~~~ 89 (104)
..||.+| .+...+.|.||+....+.
T Consensus 3 ~dV~v~~~~~~v~WvgaDEil~IL~l 28 (97)
T PF04512_consen 3 TDVPVFFDVDMVLWVGADEILSILRL 28 (97)
T ss_pred CCeeEEEecCceEEecHHHHHHHhCC
Confidence 5789999 899999999998877654
No 455
>COG3760 Uncharacterized conserved protein [Function unknown]
Probab=36.87 E-value=89 Score=20.27 Aligned_cols=47 Identities=11% Similarity=0.117 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECC
Q 034075 27 HSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGG 74 (104)
Q Consensus 27 ~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g 74 (104)
..+..+|+++||++..++=...-.-.+-+....++.| ...-.+|+.+
T Consensus 6 ~el~~lL~eLgI~~~tveHppv~tveEs~~~~~eipg-ghtKnLfLkd 52 (164)
T COG3760 6 AELFALLDELGIDHTTVEHPPVFTVEESQALRDEIPG-GHTKNLFLKD 52 (164)
T ss_pred HHHHHHHHHhCCCcccccCCCceehHHHHHHHhhcCC-CccceeEeec
Confidence 3567889999999987764332222223333344444 3334666644
No 456
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=36.78 E-value=1.1e+02 Score=19.16 Aligned_cols=24 Identities=17% Similarity=0.432 Sum_probs=18.9
Q ss_pred CCEEEEEc-CCChhHHHHHHHHHhc
Q 034075 13 RPVVIFSK-SSCCICHSIKTLFCDF 36 (104)
Q Consensus 13 ~~v~vf~~-~~Cp~C~~~~~~L~~~ 36 (104)
..|.+|+. +-|+.|..+..-|...
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~~ 121 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKKD 121 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHHH
Confidence 46889998 7899999877766554
No 457
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.76 E-value=1.5e+02 Score=21.09 Aligned_cols=54 Identities=11% Similarity=0.069 Sum_probs=37.0
Q ss_pred CEEEEEcCCC----hhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCc
Q 034075 14 PVVIFSKSSC----CICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAV 67 (104)
Q Consensus 14 ~v~vf~~~~C----p~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tv 67 (104)
+..+..-..- .|=+...+..++.|++++.++++.+....++.+.+.+.+....+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V 91 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKI 91 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCC
Confidence 4444444443 44456667778999999999998877767777777777554444
No 458
>PTZ00494 tuzin-like protein; Provisional
Probab=36.18 E-value=51 Score=25.72 Aligned_cols=44 Identities=16% Similarity=0.164 Sum_probs=33.6
Q ss_pred HHHhcCC-CEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeecCCC
Q 034075 7 AKMASER-PVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDEMPG 50 (104)
Q Consensus 7 ~~~~~~~-~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~ 50 (104)
+++-..+ .|++|+. .+|..|.-.+....+-+++-..+||-..++
T Consensus 388 ~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~ED 433 (664)
T PTZ00494 388 TQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTED 433 (664)
T ss_pred hhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcc
Confidence 3333344 4777776 689999999999999999999999965544
No 459
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=36.16 E-value=1.5e+02 Score=20.60 Aligned_cols=70 Identities=14% Similarity=0.101 Sum_probs=42.9
Q ss_pred HHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchh-HHHHHHhcCCCCCccEEEECCE
Q 034075 5 RVAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRE-LEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 5 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~-~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
.+++.+...+.+ |+.-.--.+..+-.++...|.+|..+|.++.+-..+ +...+.........|.+-+-+.
T Consensus 9 ~lk~~l~~g~~~-~g~~~~~~sp~~~e~~a~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~ 79 (256)
T PRK10558 9 KFKAALAAKQVQ-IGCWSALANPITTEVLGLAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTN 79 (256)
T ss_pred HHHHHHHcCCce-EEEEEcCCCcHHHHHHHhcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCC
Confidence 455656555532 222112334578888899999999999998765433 4444444444456777777544
No 460
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=36.02 E-value=98 Score=18.51 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=38.2
Q ss_pred CCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcC
Q 034075 12 ERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNR 90 (104)
Q Consensus 12 ~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g 90 (104)
..+|++.-...|++..+++. ..+.|...-++--+..+. . +...+. ......+|.++|..+ .-+.+++..++|
T Consensus 44 ~gkIvlv~rg~c~f~~K~~~-A~~aGA~~vIv~n~~~~~-~-~~~~~~-~~~~~~Ip~v~Is~~---~G~~L~~~l~~g 115 (122)
T cd02130 44 AGNIALIERGECPFGDKSAL-AGAAGAAAAIIYNNVPAG-G-LSGTLG-EPSGPYVPTVGISQE---DGKALVAALANG 115 (122)
T ss_pred CCEEEEEECCCCCHHHHHHH-HHHCCCcEEEEEECCCCc-c-cccccC-CCCCCEeeEEEecHH---HHHHHHHHHhcC
Confidence 45788888889999877665 455566644332121111 0 100111 112356888888654 234455555554
No 461
>PRK10670 hypothetical protein; Provisional
Probab=35.76 E-value=91 Score=19.90 Aligned_cols=22 Identities=9% Similarity=0.082 Sum_probs=17.7
Q ss_pred HHHHHHHhcCCCcEEEEeecCC
Q 034075 28 SIKTLFCDFGVNPAVYELDEMP 49 (104)
Q Consensus 28 ~~~~~L~~~~v~~~~~~vd~~~ 49 (104)
.+.++|++.+++|+..+++..+
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~ 24 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDP 24 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCC
Confidence 4678999999999997776544
No 462
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=35.68 E-value=1.7e+02 Score=21.29 Aligned_cols=68 Identities=9% Similarity=0.225 Sum_probs=39.2
Q ss_pred CCEEEEEcCC---ChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHhcCC-CCCccEEEECCEEEeccH
Q 034075 13 RPVVIFSKSS---CCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQRLGC-SPAVPAVFIGGELVGGAN 81 (104)
Q Consensus 13 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~~~~-~~tvP~ifi~g~~igg~~ 81 (104)
.++.+.+.+. .++..+++..|++.++++..++ +..++....+.+....... ...+ .|-|+|-.+-+..
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~-IiaiGGGSviD~a 102 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADY-LIAIGGGSPIDTA 102 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCE-EEEeCChHHHHHH
Confidence 4566666543 3366789999999999887764 5556665555555443311 1222 4446665444333
No 463
>KOG4749 consensus Inositol polyphosphate kinase [Signal transduction mechanisms]
Probab=35.55 E-value=88 Score=23.01 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=29.5
Q ss_pred CChhHHHHHHHHHhcCCC----cEEEEeecCCCchhHHHHHHhcC--CCCCccEEEECCEEE-ecc
Q 034075 22 SCCICHSIKTLFCDFGVN----PAVYELDEMPGGRELEQDLQRLG--CSPAVPAVFIGGELV-GGA 80 (104)
Q Consensus 22 ~Cp~C~~~~~~L~~~~v~----~~~~~vd~~~~~~~~~~~l~~~~--~~~tvP~ifi~g~~i-gg~ 80 (104)
.|-+|..-..-+.+-.+. |-..|+-.... ..++++++... .+..+ .||+||..| ||.
T Consensus 156 ~cr~cm~QvlK~~~~~~sqisey~PLDLfSG~k-~rm~~AikaL~~~pqnnl-rvF~nG~lv~gg~ 219 (375)
T KOG4749|consen 156 ICRFCMHQVLKLRENHISQISEYDPLDLFSGSK-ERMHKAIKALYSTPQNNL-RVFLNGSLVFGGL 219 (375)
T ss_pred hhHHHHHHHHHHhhcchhhhhccCchhhccccH-HHHHHHHHHHhhccccce-eEEeccceeeccc
Confidence 466675444434333332 33344432222 22666776652 33444 799999987 443
No 464
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=35.30 E-value=92 Score=23.61 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=18.2
Q ss_pred EEEEEcCCChhHHHHHHH----HHhcCCCcEE
Q 034075 15 VVIFSKSSCCICHSIKTL----FCDFGVNPAV 42 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~----L~~~~v~~~~ 42 (104)
.+|.+ ++|+-|++--.+ +++.||+...
T Consensus 339 AvILt-stCgtCtrcga~m~keiE~~GIPvV~ 369 (431)
T TIGR01917 339 AVILT-STUGTCTRCGATMVKEIERAGIPVVH 369 (431)
T ss_pred EEEEc-CCCCcchhHHHHHHHHHHHcCCCEEE
Confidence 45554 689999876555 4677888543
No 465
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=35.23 E-value=72 Score=16.96 Aligned_cols=41 Identities=10% Similarity=0.049 Sum_probs=22.2
Q ss_pred CCChhHH-HHHHHHHhcCCCcE-EEEeecCCCchhHHHHHHhc
Q 034075 21 SSCCICH-SIKTLFCDFGVNPA-VYELDEMPGGRELEQDLQRL 61 (104)
Q Consensus 21 ~~Cp~C~-~~~~~L~~~~v~~~-~~~vd~~~~~~~~~~~l~~~ 61 (104)
-.||... ++++.|++....-. .+-+|......++...+...
T Consensus 8 ~~CP~Pll~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~ 50 (70)
T PF01206_consen 8 LSCPMPLLKAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEEN 50 (70)
T ss_dssp -STTHHHHHHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHC
Confidence 3588884 78888888755422 33444333334455555444
No 466
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.19 E-value=1.6e+02 Score=20.96 Aligned_cols=59 Identities=19% Similarity=0.200 Sum_probs=38.6
Q ss_pred CCEEEEEcCCChh----HHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE
Q 034075 13 RPVVIFSKSSCCI----CHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 13 ~~v~vf~~~~Cp~----C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if 71 (104)
.+..+.....-|. =+...+..++.|+.++.++++.+....++.+.+.+.+..+.+=-|+
T Consensus 32 P~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIi 94 (282)
T PRK14180 32 PKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAIL 94 (282)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEE
Confidence 3455544444444 4456666788999999999988777667777777765544443333
No 467
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=35.16 E-value=27 Score=16.72 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=9.0
Q ss_pred HHHHHHHHhcCCCcE
Q 034075 27 HSIKTLFCDFGVNPA 41 (104)
Q Consensus 27 ~~~~~~L~~~~v~~~ 41 (104)
.+.+.+|.+.||+|.
T Consensus 7 ~~Lk~iL~~~~I~~p 21 (35)
T PF12949_consen 7 AQLKRILDEHGIEFP 21 (35)
T ss_dssp HHHHHHHHHHT---S
T ss_pred HHHHHHHHHcCCCCC
Confidence 357888888888764
No 468
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=35.15 E-value=91 Score=22.57 Aligned_cols=63 Identities=19% Similarity=0.243 Sum_probs=44.0
Q ss_pred hcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeec------CCCchhHHHHHHhcCCCCCccEE-EECC
Q 034075 10 ASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDE------MPGGRELEQDLQRLGCSPAVPAV-FIGG 74 (104)
Q Consensus 10 ~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~------~~~~~~~~~~l~~~~~~~tvP~i-fi~g 74 (104)
|.+..|.+|+-|+-.-..-++.+-.+.++++-.++..+ .+..+.+++...+. ..+-|+| |++.
T Consensus 149 WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA--~~~aPcivFiDE 218 (368)
T COG1223 149 WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERA--RKAAPCIVFIDE 218 (368)
T ss_pred cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHH--HhcCCeEEEehh
Confidence 45667999999999999999999999999988776543 12233455544433 2567777 5553
No 469
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=35.10 E-value=1.7e+02 Score=22.02 Aligned_cols=77 Identities=14% Similarity=0.178 Sum_probs=44.9
Q ss_pred CEEEEEcCC---ChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHc
Q 034075 14 PVVIFSKSS---CCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLN 89 (104)
Q Consensus 14 ~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~ 89 (104)
++.+.+.++ -|.-..+.+.|.+.+|+|+++| +...|....+.++++-.-....=-.+-|+|-..-+.-....++.+
T Consensus 72 k~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~As 151 (465)
T KOG3857|consen 72 KTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLAS 151 (465)
T ss_pred ceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhhc
Confidence 455666653 5777899999999999999887 455565555666665432212222344555433333334444444
Q ss_pred C
Q 034075 90 R 90 (104)
Q Consensus 90 g 90 (104)
+
T Consensus 152 n 152 (465)
T KOG3857|consen 152 N 152 (465)
T ss_pred C
Confidence 3
No 470
>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2. A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a
Probab=35.00 E-value=1.1e+02 Score=18.84 Aligned_cols=76 Identities=13% Similarity=0.116 Sum_probs=42.2
Q ss_pred CCCEEEEEcCCC------hhHHHH------HHHHHhcCCC-cEEEEeecCCC-chhHHHHHHhcCCCCCccEEEECCEEE
Q 034075 12 ERPVVIFSKSSC------CICHSI------KTLFCDFGVN-PAVYELDEMPG-GRELEQDLQRLGCSPAVPAVFIGGELV 77 (104)
Q Consensus 12 ~~~v~vf~~~~C------p~C~~~------~~~L~~~~v~-~~~~~vd~~~~-~~~~~~~l~~~~~~~tvP~ifi~g~~i 77 (104)
..+|+++...+| +|-.+. -..+.+.|.- .-.++....+. ... --.+........+|.+.|..+
T Consensus 39 ~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~-~G~~~~~~~~~~IP~v~is~e-- 115 (134)
T cd04815 39 KGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPH-TGMMSYDDGVPKIPAAAISVE-- 115 (134)
T ss_pred CCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCc-CCccccCCCCCCCCEEEechh--
Confidence 458999999999 665543 3556666654 33444321110 000 001111122367999998877
Q ss_pred eccHHHHhHHHcCC
Q 034075 78 GGANQVMSLHLNRS 91 (104)
Q Consensus 78 gg~~~~~~~~~~g~ 91 (104)
..+.|..+.+.|.
T Consensus 116 -d~~~L~r~l~~g~ 128 (134)
T cd04815 116 -DADMLERLAARGK 128 (134)
T ss_pred -cHHHHHHHHhCCC
Confidence 4566666666664
No 471
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=34.54 E-value=29 Score=17.96 Aligned_cols=13 Identities=15% Similarity=0.411 Sum_probs=10.3
Q ss_pred CCChhHHHHHHHH
Q 034075 21 SSCCICHSIKTLF 33 (104)
Q Consensus 21 ~~Cp~C~~~~~~L 33 (104)
..||.|++.++--
T Consensus 34 ~RC~~CR~~rk~~ 46 (49)
T PF13451_consen 34 KRCPSCRQARKQR 46 (49)
T ss_pred ccCHHHHHHHHHh
Confidence 3699999988754
No 472
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair]
Probab=34.47 E-value=1.8e+02 Score=20.99 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 24 CICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 24 p~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
-||..+..++...+.....+-+|..........++.+......-|..|.
T Consensus 171 lH~~ai~~ll~~~~~~~~~ivIDqFa~~~~~~~yl~k~~~~~~~p~~f~ 219 (297)
T COG1039 171 LHNQAIQNLLPQKGAQPEFIVIDQFASSENYKNYLQKETNKFSEPVLFL 219 (297)
T ss_pred HHHHHHHHHHHhccCCCeEEEeccccchhHHHHHHHhhccCCCCceeee
Confidence 3777788888777888888999988777666677777766678888885
No 473
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=33.85 E-value=1.9e+02 Score=21.08 Aligned_cols=49 Identities=10% Similarity=0.268 Sum_probs=33.3
Q ss_pred CCEEEEEcCC---ChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHhc
Q 034075 13 RPVVIFSKSS---CCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQRL 61 (104)
Q Consensus 13 ~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~~ 61 (104)
.++.+.+.+. .++..++...|++.++.+..++ +..++....+.+.....
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~ 76 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLA 76 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHH
Confidence 3566666543 5577889999999999887664 56666666555555443
No 474
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=33.81 E-value=1.4e+02 Score=22.59 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=40.2
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecC------CCchhHHHHHHhcCCCCCccEEEECC
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEM------PGGRELEQDLQRLGCSPAVPAVFIGG 74 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~------~~~~~~~~~l~~~~~~~tvP~ifi~g 74 (104)
.+.+|+-|+|.-..-++.+..+.++++..++.... .....+++.+..... .....+|+|.
T Consensus 90 giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~-~~p~Il~iDE 155 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK-NAPCIIFIDE 155 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHHh-cCCCEEEEec
Confidence 48999999999999999999999999877654321 112234555544322 2334678776
No 475
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.73 E-value=1.7e+02 Score=20.91 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=37.0
Q ss_pred CEEEEEcCC----ChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCc
Q 034075 14 PVVIFSKSS----CCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAV 67 (104)
Q Consensus 14 ~v~vf~~~~----Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tv 67 (104)
.+.++.... ..|=+...+..++.|++++.++++.+....++.+.+.+.+..+.+
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 90 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDV 90 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 454444444 445556667778999999999998776666677777776554444
No 476
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=33.71 E-value=1.5e+02 Score=20.02 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=35.5
Q ss_pred hHHHHHHHHHhcCCCcEEEEeecCCC--chhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHHHcC
Q 034075 25 ICHSIKTLFCDFGVNPAVYELDEMPG--GRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLHLNR 90 (104)
Q Consensus 25 ~C~~~~~~L~~~~v~~~~~~vd~~~~--~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~~~g 90 (104)
....+...+.++++.+-+.|++.+-. +.++ +.+++......+|.+.-+| ++..+++.++.+.|
T Consensus 142 ~~~~~~~~~~~~g~~ii~tdI~~dGt~~G~d~-eli~~i~~~~~~pvia~GG--i~s~ed~~~l~~~G 206 (221)
T TIGR00734 142 SLEEVRDFLNSFDYGLIVLDIHSVGTMKGPNL-ELLTKTLELSEHPVMLGGG--ISGVEDLELLKEMG 206 (221)
T ss_pred cHHHHHHHHHhcCCEEEEEECCccccCCCCCH-HHHHHHHhhCCCCEEEeCC--CCCHHHHHHHHHCC
Confidence 45556677777777555556665321 1111 2233333335689877777 45677777665543
No 477
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=33.57 E-value=2e+02 Score=21.38 Aligned_cols=58 Identities=9% Similarity=0.190 Sum_probs=42.0
Q ss_pred HHHHHHhcC---CCEEEEEcCC---ChhHHHHHHHHHhcCCCcEEEE-eecCCCchhHHHHHHhc
Q 034075 4 ERVAKMASE---RPVVIFSKSS---CCICHSIKTLFCDFGVNPAVYE-LDEMPGGRELEQDLQRL 61 (104)
Q Consensus 4 ~~~~~~~~~---~~v~vf~~~~---Cp~C~~~~~~L~~~~v~~~~~~-vd~~~~~~~~~~~l~~~ 61 (104)
+.+.+.+.. .++.+.+.+. .++-.++.+.|+..+++|.+.+ +..+|....+.+..+.+
T Consensus 18 ~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~ 82 (377)
T COG1454 18 KELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVA 82 (377)
T ss_pred HHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHH
Confidence 445555554 5788888875 7788999999999999988765 67777766666555444
No 478
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=33.53 E-value=79 Score=19.59 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCc
Q 034075 2 AMERVAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNP 40 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~ 40 (104)
+.++++.+...-.++|||+..=.++..+...|+..+..+
T Consensus 41 l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~ 79 (159)
T PF03031_consen 41 LDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNGKLF 79 (159)
T ss_dssp HHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSE
T ss_pred HHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhcccc
Confidence 356777776667899999988888889998888654444
No 479
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.43 E-value=1.8e+02 Score=20.74 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=37.2
Q ss_pred CEEEEEcCCCh----hHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCc
Q 034075 14 PVVIFSKSSCC----ICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAV 67 (104)
Q Consensus 14 ~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tv 67 (104)
++.++....-| |=+...+..++.|+.++.++++.+....++.+.+.+.+....+
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 91 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRI 91 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 45444444444 4456677778899999999998877666777777776554444
No 480
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=33.22 E-value=1.8e+02 Score=23.09 Aligned_cols=66 Identities=17% Similarity=0.094 Sum_probs=42.0
Q ss_pred CEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHH
Q 034075 14 PVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQ 82 (104)
Q Consensus 14 ~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~ 82 (104)
++++.+. +..+.|.++.+.|.+.|+..+++|+..-....+ +.+..... .....+...+...||+..
T Consensus 506 ditIva~G~~v~~aleAa~~L~~~Gi~v~VId~~~lkPlD~--~~i~sv~k-~~~vvvveE~~~~gG~g~ 572 (641)
T PRK12571 506 DVAILSVGAHLHECLDAADLLEAEGISVTVADPRFVKPLDE--ALTDLLVR-HHIVVIVEEQGAMGGFGA 572 (641)
T ss_pred CEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEcCcCCCcCH--HHHHHHhh-hCCEEEEECCCCCCCHHH
Confidence 4555544 567889999999999999999999864222211 22322222 224566667666788865
No 481
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=33.14 E-value=1.7e+02 Score=22.21 Aligned_cols=70 Identities=4% Similarity=0.042 Sum_probs=46.4
Q ss_pred HHHHhcCC---CEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhc---CCCCCccEEEECCEE
Q 034075 6 VAKMASER---PVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRL---GCSPAVPAVFIGGEL 76 (104)
Q Consensus 6 ~~~~~~~~---~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~---~~~~tvP~ifi~g~~ 76 (104)
+++++... ..++|+-|+|.-..-++-+-...+.+|..++--. ..-.++++.+.+. .+...-+.+|||--+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gvkdlr~i~e~a~~~~~~gr~tiLflDEIH 114 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGVKDLREIIEEARKNRLLGRRTILFLDEIH 114 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccHHHHHHHHHHHHHHHhcCCceEEEEehhh
Confidence 45566544 4788888999999988888888899988887542 2334455555433 222234578887654
No 482
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=33.11 E-value=75 Score=16.27 Aligned_cols=19 Identities=21% Similarity=0.588 Sum_probs=13.2
Q ss_pred CCChhHH-HHHHHHHhc-CCC
Q 034075 21 SSCCICH-SIKTLFCDF-GVN 39 (104)
Q Consensus 21 ~~Cp~C~-~~~~~L~~~-~v~ 39 (104)
-.|+.|. ++++.|.+. |+.
T Consensus 7 m~C~~C~~~v~~~l~~~~GV~ 27 (62)
T PF00403_consen 7 MTCEGCAKKVEKALSKLPGVK 27 (62)
T ss_dssp TTSHHHHHHHHHHHHTSTTEE
T ss_pred cccHHHHHHHHHHHhcCCCCc
Confidence 4799997 566677665 554
No 483
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=33.05 E-value=1.2e+02 Score=18.58 Aligned_cols=81 Identities=11% Similarity=0.153 Sum_probs=43.6
Q ss_pred CEEEEEcCCChhHHHHHHHHHhcCCCc--EEEEeecC--CCchhHHHHHHhcCCCCCccEEEECCE------EEeccHHH
Q 034075 14 PVVIFSKSSCCICHSIKTLFCDFGVNP--AVYELDEM--PGGRELEQDLQRLGCSPAVPAVFIGGE------LVGGANQV 83 (104)
Q Consensus 14 ~v~vf~~~~Cp~C~~~~~~L~~~~v~~--~~~~vd~~--~~~~~~~~~l~~~~~~~tvP~ifi~g~------~igg~~~~ 83 (104)
+|++|.-.||+|-..=..=..+...|. ..+.+.-. -+...+.++|..- .-.|+|-|= +..|....
T Consensus 1 kIl~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~G-----ADGV~V~gC~~g~Ch~~~Gn~~a 75 (124)
T PF02662_consen 1 KILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKG-----ADGVLVAGCHPGDCHYREGNYRA 75 (124)
T ss_pred CEEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcC-----CCEEEEeCCCCCCCCcchhhHHH
Confidence 588999999998764333334444443 34444221 1223345555432 335666443 34444433
Q ss_pred HhHHHcCCcHHHHhhcCC
Q 034075 84 MSLHLNRSLIPMLKRVGA 101 (104)
Q Consensus 84 ~~~~~~g~L~~~L~~~g~ 101 (104)
..+-..+++.|+..|+
T Consensus 76 --~~Rv~~~k~~L~~~Gi 91 (124)
T PF02662_consen 76 --EKRVERLKKLLEELGI 91 (124)
T ss_pred --HHHHHHHHHHHHHcCC
Confidence 3344577888888776
No 484
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=32.93 E-value=41 Score=20.18 Aligned_cols=16 Identities=38% Similarity=0.825 Sum_probs=13.6
Q ss_pred CCccEEEECCEEEecc
Q 034075 65 PAVPAVFIGGELVGGA 80 (104)
Q Consensus 65 ~tvP~ifi~g~~igg~ 80 (104)
..-|.|+|||+.+|..
T Consensus 40 ~~~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 40 AVKPDVYVDGELIGEL 55 (117)
T ss_pred cccceEEECCEEEEEe
Confidence 6678999999999864
No 485
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=32.85 E-value=1.1e+02 Score=18.31 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=24.5
Q ss_pred cCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEee
Q 034075 11 SERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELD 46 (104)
Q Consensus 11 ~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd 46 (104)
...+|++|.......+..+..+|+..|.+ ...++
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~ 118 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLE 118 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeC
Confidence 34568888876666777777888888974 45555
No 486
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=32.70 E-value=95 Score=23.32 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=6.8
Q ss_pred CccEEEECCEEE
Q 034075 66 AVPAVFIGGELV 77 (104)
Q Consensus 66 tvP~ifi~g~~i 77 (104)
.+|.+.++|...
T Consensus 391 GIP~L~ietD~~ 402 (430)
T TIGR03191 391 GIPIMTFEGNMG 402 (430)
T ss_pred CCCEEEEECCCC
Confidence 366666655544
No 487
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.69 E-value=1.8e+02 Score=20.67 Aligned_cols=58 Identities=17% Similarity=0.231 Sum_probs=38.1
Q ss_pred CEEEEEcCCCh----hHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE
Q 034075 14 PVVIFSKSSCC----ICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 14 ~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if 71 (104)
++.+..-..-| |=+.-.+..++.|+.++.++++.+....++.+.+.+.+..+.+=-|+
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIi 95 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGIL 95 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 45444444444 44456666788899999999988776666777777765545443333
No 488
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=32.69 E-value=1e+02 Score=21.63 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=28.8
Q ss_pred HHHHHHHHhcCCCEEEEEcCCC-hhHHHHHHHHHhcCCCcE
Q 034075 2 AMERVAKMASERPVVIFSKSSC-CICHSIKTLFCDFGVNPA 41 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~~~C-p~C~~~~~~L~~~~v~~~ 41 (104)
|.+..++++...+|....-+.| ..|..+..++++.++++-
T Consensus 54 a~~~a~~l~~~~~v~~viG~~~s~~~~a~~~~~~~~~ip~i 94 (350)
T cd06366 54 AASAALDLLENKPVVAIIGPQCSSVAEFVAEVANEWNVPVL 94 (350)
T ss_pred HHHHHHHHhccCCceEEECCCcHHHHHHHHHHhhcCCeeEE
Confidence 4566778887767766666666 466777888888888854
No 489
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.68 E-value=1.8e+02 Score=20.83 Aligned_cols=58 Identities=14% Similarity=0.135 Sum_probs=38.5
Q ss_pred CEEEEEcCC----ChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEE
Q 034075 14 PVVIFSKSS----CCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVF 71 (104)
Q Consensus 14 ~v~vf~~~~----Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~if 71 (104)
++.+..-.. ..|=+...+..++.|+.++.+++..+....++.+.+.+.+....+=-|+
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIl 94 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGIL 94 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEE
Confidence 444444433 4455566777789999999999987766666777777765545443333
No 490
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=32.64 E-value=47 Score=26.27 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCEEEEE--cCCChhHHHHHHH-------HHhcCCCcEEEEeec
Q 034075 3 MERVAKMASERPVVIFS--KSSCCICHSIKTL-------FCDFGVNPAVYELDE 47 (104)
Q Consensus 3 ~~~~~~~~~~~~v~vf~--~~~Cp~C~~~~~~-------L~~~~v~~~~~~vd~ 47 (104)
|+.+++.-++|+.++.+ .++|.+|+-+..- =+.++-.|.-++||.
T Consensus 102 qeaf~kar~enkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDR 155 (786)
T KOG2244|consen 102 QEAFNKARAENKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDR 155 (786)
T ss_pred HHHHHHHHhcCCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccCh
Confidence 67788888888866544 4789999855432 122334455566664
No 491
>KOG3490 consensus Transcription elongation factor SPT4 [Transcription]
Probab=32.61 E-value=1.2e+02 Score=18.44 Aligned_cols=19 Identities=26% Similarity=0.446 Sum_probs=14.1
Q ss_pred EEEEEcCCChhHHHHHHHHHhcC
Q 034075 15 VVIFSKSSCCICHSIKTLFCDFG 37 (104)
Q Consensus 15 v~vf~~~~Cp~C~~~~~~L~~~~ 37 (104)
+-.|-+.+||.|. +|+-.|
T Consensus 20 ~~~F~~dGC~Nc~----~l~mkg 38 (111)
T KOG3490|consen 20 LNGFRKDGCENCP----MLNMKG 38 (111)
T ss_pred hhhhhhcCCCCch----hhhhcc
Confidence 4468889999998 555555
No 492
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=32.59 E-value=1.1e+02 Score=23.25 Aligned_cols=36 Identities=17% Similarity=0.333 Sum_probs=21.6
Q ss_pred HHHHHhcCC-CEEEEEcCCChhHHHHHHH----HHhcCCCcE
Q 034075 5 RVAKMASER-PVVIFSKSSCCICHSIKTL----FCDFGVNPA 41 (104)
Q Consensus 5 ~~~~~~~~~-~v~vf~~~~Cp~C~~~~~~----L~~~~v~~~ 41 (104)
..+++.... ..+|.+ ++|+-|++--.+ +++.|++..
T Consensus 328 Ia~~Lk~dgVDAVILT-stCgtC~r~~a~m~keiE~~GiPvv 368 (431)
T TIGR01918 328 FVVELKQGGVDAVILT-STUGTCTRCGATMVKEIERAGIPVV 368 (431)
T ss_pred HHHHHHHcCCCEEEEc-CCCCcchhHHHHHHHHHHHcCCCEE
Confidence 333443333 345555 688888876555 467788854
No 493
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.49 E-value=1.9e+02 Score=20.64 Aligned_cols=59 Identities=19% Similarity=0.264 Sum_probs=38.9
Q ss_pred CEEEEEcCCCh----hHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEE
Q 034075 14 PVVIFSKSSCC----ICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFI 72 (104)
Q Consensus 14 ~v~vf~~~~Cp----~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi 72 (104)
++.+..-..-| |=+.-.+..++.|+.++.++++.+....++.+.+.+.+..+++=-|++
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 94 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILV 94 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 45444444444 445666667889999999999887766677777777655454433333
No 494
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=32.35 E-value=1.1e+02 Score=20.66 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=34.9
Q ss_pred hHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCE
Q 034075 25 ICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGE 75 (104)
Q Consensus 25 ~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~ 75 (104)
....++.+|+++++.--.+.+..+....++.+.+. +.....|.+.+..+
T Consensus 137 ~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~~--~~~~y~p~iiV~NK 185 (233)
T cd01896 137 DEKTIKAILREYKIHNADVLIREDITVDDLIDVIE--GNRVYIPCLYVYNK 185 (233)
T ss_pred CHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHHh--CCceEeeEEEEEEC
Confidence 45899999999999877777766666666666663 33466777766544
No 495
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=32.33 E-value=1.1e+02 Score=19.35 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCEEEEEcCCChhHHHHHHHHHhc
Q 034075 2 AMERVAKMASERPVVIFSKSSCCICHSIKTLFCDF 36 (104)
Q Consensus 2 a~~~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~ 36 (104)
+.++++++.....++|||+..=.|...+...|+-.
T Consensus 47 l~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp~ 81 (162)
T TIGR02251 47 VDEFLERVSKWYELVIFTASLEEYADPVLDILDRG 81 (162)
T ss_pred HHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCcC
Confidence 46778888777789999998887777777766643
No 496
>PRK05899 transketolase; Reviewed
Probab=32.30 E-value=1.6e+02 Score=23.08 Aligned_cols=85 Identities=9% Similarity=0.079 Sum_probs=48.3
Q ss_pred CCEEEEEc-CCChhHHHHHHHHHhcCCCcEEEEeecCCCc-hhHHHHHHhcCCCCCccEEEECC--------------EE
Q 034075 13 RPVVIFSK-SSCCICHSIKTLFCDFGVNPAVYELDEMPGG-RELEQDLQRLGCSPAVPAVFIGG--------------EL 76 (104)
Q Consensus 13 ~~v~vf~~-~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~-~~~~~~l~~~~~~~tvP~ifi~g--------------~~ 76 (104)
.++++.+. +.-+.|.++...|++.|+..+++|+-.-... .+....+...-+...-+.+.+.+ ..
T Consensus 511 ~dvtiia~G~~v~~al~Aa~~L~~~gi~~~VId~~sikPlD~~e~h~~~~~lg~~~~~~v~~e~~~~~g~~~~~~~~~~~ 590 (624)
T PRK05899 511 PDVILIATGSEVHLALEAADELEAEGIKVRVVSMPSTELFDEQDAAYKESVLPAAVTARVAVEAGVADGWYKYVGLDGKV 590 (624)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHhcCCcEEEEECCCcchhccCcHHHHhccccccccceEEEccCCccchhhhcCCCceE
Confidence 34554444 4567888999999999999999987543211 11111222222223335666554 22
Q ss_pred EeccHHHHhHHHcCCcHHHHhhcCC
Q 034075 77 VGGANQVMSLHLNRSLIPMLKRVGA 101 (104)
Q Consensus 77 igg~~~~~~~~~~g~L~~~L~~~g~ 101 (104)
+ |.++ +-..|...++++..|+
T Consensus 591 i-Gv~~---f~~~g~~~~l~~~~gl 611 (624)
T PRK05899 591 L-GIDT---FGASAPADELFKEFGF 611 (624)
T ss_pred E-ECCC---CCCCCCHHHHHHHhCC
Confidence 2 3333 4457788888777775
No 497
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.29 E-value=1.9e+02 Score=20.65 Aligned_cols=46 Identities=15% Similarity=0.111 Sum_probs=34.0
Q ss_pred CChhHHHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCc
Q 034075 22 SCCICHSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAV 67 (104)
Q Consensus 22 ~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tv 67 (104)
...|=+...+..++.|+.++.+++..+....++.+.+.+.+..+.+
T Consensus 45 s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V 90 (285)
T PRK14191 45 SQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNI 90 (285)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 3455567777788999999999998877767777777776554444
No 498
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=32.28 E-value=2.5e+02 Score=22.15 Aligned_cols=67 Identities=12% Similarity=0.030 Sum_probs=45.0
Q ss_pred hcCCCEEEEEcCCChhH--HHHHHHHHhcCCCcEEEEeecCCCchhHHHHHHhcCCCCCccEEEECCEEEeccHHHHhHH
Q 034075 10 ASERPVVIFSKSSCCIC--HSIKTLFCDFGVNPAVYELDEMPGGRELEQDLQRLGCSPAVPAVFIGGELVGGANQVMSLH 87 (104)
Q Consensus 10 ~~~~~v~vf~~~~Cp~C--~~~~~~L~~~~v~~~~~~vd~~~~~~~~~~~l~~~~~~~tvP~ifi~g~~igg~~~~~~~~ 87 (104)
.....-+++..-|+|.- .++++.|++.+.....++... ++ . ....+|+.+-|.+++..++.+.+++
T Consensus 269 ~~~t~~~~~l~GWvP~~~~~~l~~~l~~~~~~~~~v~~~~-~~-~----------~~~~~Pt~l~N~~~~~pFE~lv~mY 336 (646)
T PRK05771 269 FLKTDKTFAIEGWVPEDRVKKLKELIDKATGGSAYVEFVE-PD-E----------EEEEVPTKLKNPKFIKPFESLTEMY 336 (646)
T ss_pred hhcCCcEEEEEEEeehhHHHHHHHHHHHhcCCcEEEEEeC-CC-C----------cCCCCCEEeeCCchhhhHHHHHHHc
Confidence 33445566667788875 478888888765433333331 11 0 1257999999999999999988876
Q ss_pred H
Q 034075 88 L 88 (104)
Q Consensus 88 ~ 88 (104)
-
T Consensus 337 g 337 (646)
T PRK05771 337 S 337 (646)
T ss_pred C
Confidence 3
No 499
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=32.24 E-value=1.7e+02 Score=20.26 Aligned_cols=55 Identities=16% Similarity=0.231 Sum_probs=36.2
Q ss_pred HHHHHhcCCCEEEEEcCCChhHHHHHHHHHhcCCCcEEEEeecCCCc--hhHHHHHHhc
Q 034075 5 RVAKMASERPVVIFSKSSCCICHSIKTLFCDFGVNPAVYELDEMPGG--RELEQDLQRL 61 (104)
Q Consensus 5 ~~~~~~~~~~v~vf~~~~Cp~C~~~~~~L~~~~v~~~~~~vd~~~~~--~~~~~~l~~~ 61 (104)
+.+++....++++.|+.+ ||.++.-++++.|++..-+........ ..+||.+++.
T Consensus 131 ~a~~i~~~~~~iIVTq~f--Hm~RA~~ia~~~Gi~~~~~~a~~~~~~~~~~~RE~~Ar~ 187 (239)
T PRK10834 131 RTRKVFDTNDFIIITQRF--HCERALFIALHMGIQAQCYAVPSPKNMLSVRLREFGARL 187 (239)
T ss_pred HHHHHhCCCCEEEECCHH--HHHHHHHHHHHcCCceEEEeCCCCcccccchHHHHHHHH
Confidence 344566666777777654 899999999999998776665432221 2256666553
No 500
>COG1543 Uncharacterized conserved protein [Function unknown]
Probab=32.22 E-value=30 Score=26.50 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=0.0
Q ss_pred EEcCCChhHHHHHHHHHhcCCCcEEEE
Q 034075 18 FSKSSCCICHSIKTLFCDFGVNPAVYE 44 (104)
Q Consensus 18 f~~~~Cp~C~~~~~~L~~~~v~~~~~~ 44 (104)
|+.|-|.|-.-+..+|++.|++|..+|
T Consensus 181 iWlPEcay~pgie~~l~~~Gi~yf~vd 207 (504)
T COG1543 181 IWLPECAYAPGIERILKDAGIEYFFVD 207 (504)
T ss_pred eechhhccccchHHHHHhcCceEEEec
Done!