Query 034078
Match_columns 104
No_of_seqs 110 out of 198
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034078.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034078hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b7j_A Neuraminidase; hydrolas 37.4 11 0.00037 32.2 1.1 14 79-92 270-283 (469)
2 2htq_A Neuraminidase; zanamivi 36.0 15 0.0005 30.8 1.7 17 78-94 187-203 (390)
3 1xu2_R Tumor necrosis factor r 34.8 15 0.0005 22.4 1.1 20 50-69 20-39 (47)
4 2h9e_C Anti-coagulant protein 34.6 3.4 0.00012 26.7 -1.9 50 44-97 13-79 (84)
5 1f8d_A Neuraminidase; hydrolas 28.4 12 0.00041 31.3 -0.0 17 78-94 188-204 (388)
6 1v0z_A Neuraminidase; glycosid 28.1 12 0.00042 31.2 -0.0 17 78-94 188-204 (389)
7 4gdi_A Neuraminidase; influenz 27.6 12 0.00042 31.1 -0.1 17 78-94 190-206 (373)
8 1nmb_N N9 neuraminidase; compl 27.5 18 0.00062 30.9 0.9 12 80-91 272-283 (470)
9 3b7e_A Neuraminidase; 6-bladed 24.5 16 0.00055 30.5 0.0 17 78-94 187-203 (385)
10 3sal_A Neuraminidase; 6-bladed 24.0 14 0.00048 30.9 -0.4 17 77-93 187-203 (395)
No 1
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=37.36 E-value=11 Score=32.21 Aligned_cols=14 Identities=36% Similarity=0.852 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCccc
Q 034078 79 PGTSGHLEVCPCYA 92 (104)
Q Consensus 79 ~GT~Gnk~~CpCY~ 92 (104)
+|+..|.|||.||.
T Consensus 270 ~gs~~HiEECSCY~ 283 (469)
T 4b7j_A 270 NAPNYHYEECSCYP 283 (469)
T ss_dssp CCTTCCCCSCEEEE
T ss_pred CCCcccceeeeecc
Confidence 34444444444443
No 2
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=36.01 E-value=15 Score=30.78 Aligned_cols=17 Identities=35% Similarity=0.776 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCccccc
Q 034078 78 PPGTSGHLEVCPCYATM 94 (104)
Q Consensus 78 P~GT~Gnk~~CpCY~~m 94 (104)
.+|+.+|.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46889999999999765
No 3
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=34.80 E-value=15 Score=22.44 Aligned_cols=20 Identities=35% Similarity=0.976 Sum_probs=17.0
Q ss_pred HhHHhhcCCCCchHHHHHhH
Q 034078 50 CKARCQLSSRPNLCHRACGT 69 (104)
Q Consensus 50 C~~RCs~~~~~~~C~~~C~~ 69 (104)
|..||+.+..+..|-.+|..
T Consensus 20 C~l~Cs~~~~p~tC~~fC~~ 39 (47)
T 1xu2_R 20 CQLRCSSNTPPLTCQRYCNA 39 (47)
T ss_dssp GGGTTTSSSCCGGGHHHHHC
T ss_pred hhcccCCCCCcchHHHHHhh
Confidence 88999977788899999863
No 4
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=34.61 E-value=3.4 Score=26.71 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=21.2
Q ss_pred CCchH-HHhHHhhcC-------CC-CchH-HHHHhHhcCcccccCCCCCCCC-------CCCCcccccccc
Q 034078 44 IDCGA-ACKARCQLS-------SR-PNLC-HRACGTCCARCKCVPPGTSGHL-------EVCPCYATMTTH 97 (104)
Q Consensus 44 ~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~~C~CVP~GT~Gnk-------~~CpCY~~m~t~ 97 (104)
.+|++ +|...|+.. .+ ...| .+.|. .-|.|. +|++-|. ++|||+.+-...
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~-~G~vr~~~g~CV~~~~Cpc~~~~~~y 79 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCE-EGFYRNKDDKCVSAEDCELDNMDFIY 79 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEEC-SSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCC-CCeEEcCCCCEECHHHCCCCcCCeEC
Confidence 36999 999999863 22 3678 66665 678885 4888773 468887654443
No 5
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=28.44 E-value=12 Score=31.26 Aligned_cols=17 Identities=41% Similarity=0.931 Sum_probs=14.5
Q ss_pred CCCCCCCCCCCCccccc
Q 034078 78 PPGTSGHLEVCPCYATM 94 (104)
Q Consensus 78 P~GT~Gnk~~CpCY~~m 94 (104)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46889999999999765
No 6
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=28.13 E-value=12 Score=31.22 Aligned_cols=17 Identities=35% Similarity=0.872 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCccccc
Q 034078 78 PPGTSGHLEVCPCYATM 94 (104)
Q Consensus 78 P~GT~Gnk~~CpCY~~m 94 (104)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 47899999999999775
No 7
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=27.56 E-value=12 Score=31.08 Aligned_cols=17 Identities=24% Similarity=0.337 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCccccc
Q 034078 78 PPGTSGHLEVCPCYATM 94 (104)
Q Consensus 78 P~GT~Gnk~~CpCY~~m 94 (104)
.+|+..|.|||.||.+.
T Consensus 190 l~~s~~HiEECSCYp~~ 206 (373)
T 4gdi_A 190 LNTTGINFEYSTCYTIN 206 (373)
T ss_dssp CCCTTCCCEEEEEEEET
T ss_pred cCCCCCCceeeeecCCC
Confidence 36888999999999653
No 8
>1nmb_N N9 neuraminidase; complex (hydrolase-immunoglobulin), complex (hydrolase- immunoglobulin) complex; HET: NAG BMA MAN; 2.20A {Influenza a virus} SCOP: b.68.1.1
Probab=27.47 E-value=18 Score=30.87 Aligned_cols=12 Identities=58% Similarity=1.409 Sum_probs=4.9
Q ss_pred CCCCCCCCCCcc
Q 034078 80 GTSGHLEVCPCY 91 (104)
Q Consensus 80 GT~Gnk~~CpCY 91 (104)
|+.+|.|||.||
T Consensus 272 ~~~~HiEECscy 283 (470)
T 1nmb_N 272 GTAKHIEECSCY 283 (470)
T ss_dssp SSCSCCCSCEEE
T ss_pred CCcCceEeeeEe
Confidence 333344444444
No 9
>3b7e_A Neuraminidase; 6-bladed beta-propeller, glycosidase, hydrolase, membrane, transmembrane, virion; HET: NAG FUC ZMR; 1.45A {Influenza a virus} PDB: 3beq_A* 3cye_A* 2hty_A* 2hu0_A* 2hu4_A* 3cl2_A* 3ckz_A* 3cl0_A* 3ti4_A* 3nss_A* 3ti3_A* 3ti5_A* 3ti6_A* 2htv_A* 2htw_A*
Probab=24.54 E-value=16 Score=30.49 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=14.4
Q ss_pred CCCCCCCCCCCCccccc
Q 034078 78 PPGTSGHLEVCPCYATM 94 (104)
Q Consensus 78 P~GT~Gnk~~CpCY~~m 94 (104)
.+|+.+|.|||.||-+.
T Consensus 187 l~gs~~HiEECSCYp~~ 203 (385)
T 3b7e_A 187 LNAPNYHYEECSCYPDT 203 (385)
T ss_dssp CCCTTCCCEEEEEEEET
T ss_pred cCCCccceEeeeEecCC
Confidence 46889999999999765
No 10
>3sal_A Neuraminidase; 6-bladed beta-propeller, hydrolase, calcium binding, glycosy; HET: NAG BMA; 1.50A {Influenza a virus} PDB: 3san_A* 3ti8_A* 4gb1_A* 3o9j_A* 3o9k_A*
Probab=24.02 E-value=14 Score=30.94 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=14.3
Q ss_pred cCCCCCCCCCCCCcccc
Q 034078 77 VPPGTSGHLEVCPCYAT 93 (104)
Q Consensus 77 VP~GT~Gnk~~CpCY~~ 93 (104)
.++|..+|.|||.||-+
T Consensus 187 ~l~~~~qHiEECSCYp~ 203 (395)
T 3sal_A 187 EVSFQGGHIEECSCYPN 203 (395)
T ss_dssp EECCTTCCCEEEEEEEE
T ss_pred ecCCCCccceeeeecCC
Confidence 35788899999999965
Done!