Query 034078
Match_columns 104
No_of_seqs 110 out of 198
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 16:09:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034078.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034078hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h9ec1 g.22.1.1 (C:6-83) Anti 59.5 0.49 3.6E-05 28.7 -1.3 52 45-97 9-74 (78)
2 d1jv2b5 g.3.11.6 (B:563-605) I 57.2 1.7 0.00012 24.6 0.9 19 71-89 21-40 (43)
3 d1xu2r_ g.24.1.2 (R:) Tumor ne 49.7 3 0.00022 22.8 1.1 19 50-68 17-35 (36)
4 d1exta1 g.24.1.1 (A:13-71) Tum 45.4 2 0.00015 24.8 -0.1 25 69-96 16-49 (59)
5 d2aepa1 b.68.1.1 (A:83-469) In 39.9 2.9 0.00021 33.0 0.0 19 77-95 185-203 (387)
6 d1f8ea_ b.68.1.1 (A:) Influenz 36.1 3.6 0.00026 32.4 0.0 17 78-94 188-204 (388)
7 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 30.2 0.89 6.5E-05 26.5 -3.5 35 45-83 12-46 (60)
8 d2c7na1 g.39.1.15 (A:18-73) Ra 21.7 7.8 0.00057 22.9 -0.3 16 80-95 7-26 (56)
9 d1kloa3 g.3.11.2 (A:122-172) L 19.7 14 0.001 20.2 0.5 21 74-94 1-28 (51)
10 d1nsca_ b.68.1.1 (A:) Influenz 19.7 7 0.00051 30.7 -1.1 17 78-94 191-208 (390)
No 1
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=59.48 E-value=0.49 Score=28.67 Aligned_cols=52 Identities=17% Similarity=0.428 Sum_probs=23.2
Q ss_pred CchH-HHhHHhhcCCCCchHHHHHhH------hcCcccccCCCCCCCCC-------CCCcccccccc
Q 034078 45 DCGA-ACKARCQLSSRPNLCHRACGT------CCARCKCVPPGTSGHLE-------VCPCYATMTTH 97 (104)
Q Consensus 45 ~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~~C~CVP~GT~Gnk~-------~CpCY~~m~t~ 97 (104)
+|++ .|..-|+.-.....|...++. |=+-|.| |+|++-|.+ +|||+-+=++.
T Consensus 9 ~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 9 SCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp -------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred ccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 5665 477777665555555554443 3466778 899987654 57898765554
No 2
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.25 E-value=1.7 Score=24.56 Aligned_cols=19 Identities=47% Similarity=1.340 Sum_probs=14.7
Q ss_pred cCcccccCCCCCCCC-CCCC
Q 034078 71 CARCKCVPPGTSGHL-EVCP 89 (104)
Q Consensus 71 C~~C~CVP~GT~Gnk-~~Cp 89 (104)
|++|.|--||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777888865 5565
No 3
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.66 E-value=3 Score=22.82 Aligned_cols=19 Identities=37% Similarity=1.016 Sum_probs=17.3
Q ss_pred HhHHhhcCCCCchHHHHHh
Q 034078 50 CKARCQLSSRPNLCHRACG 68 (104)
Q Consensus 50 C~~RCs~~~~~~~C~~~C~ 68 (104)
|.-|||..+-+-.|.+||+
T Consensus 17 c~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 17 CQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred ceeecCCCCCchhhhhhcc
Confidence 7889999889999999996
No 4
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.40 E-value=2 Score=24.79 Aligned_cols=25 Identities=36% Similarity=0.798 Sum_probs=16.6
Q ss_pred HhcCcccccCCCCC------CC--CCCC-Cccccccc
Q 034078 69 TCCARCKCVPPGTS------GH--LEVC-PCYATMTT 96 (104)
Q Consensus 69 ~CC~~C~CVP~GT~------Gn--k~~C-pCY~~m~t 96 (104)
.||.+| ||||| +. .-+| ||-..-.|
T Consensus 16 ~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt 49 (59)
T d1exta1 16 ICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFT 49 (59)
T ss_dssp CEEECB---CTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred cCCCCC---CCCCeecCccCCCCCCCEeccCCCCCcc
Confidence 466665 89988 42 4688 78766544
No 5
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=39.95 E-value=2.9 Score=32.98 Aligned_cols=19 Identities=32% Similarity=0.793 Sum_probs=15.9
Q ss_pred cCCCCCCCCCCCCcccccc
Q 034078 77 VPPGTSGHLEVCPCYATMT 95 (104)
Q Consensus 77 VP~GT~Gnk~~CpCY~~m~ 95 (104)
.++|+.++.|||.||.+..
T Consensus 185 ~l~g~~~HiEECSCYp~~~ 203 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRYP 203 (387)
T ss_dssp ECCSSCCCCEEEEEEEETT
T ss_pred ecCCCcCceEeeeecCCCC
Confidence 3679999999999998763
No 6
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=36.11 E-value=3.6 Score=32.41 Aligned_cols=17 Identities=41% Similarity=0.931 Sum_probs=14.8
Q ss_pred CCCCCCCCCCCCccccc
Q 034078 78 PPGTSGHLEVCPCYATM 94 (104)
Q Consensus 78 P~GT~Gnk~~CpCY~~m 94 (104)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 57899999999999874
No 7
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=30.21 E-value=0.89 Score=26.45 Aligned_cols=35 Identities=31% Similarity=0.888 Sum_probs=25.6
Q ss_pred CchHHHhHHhhcCCCCchHHHHHhHhcCcccccCCCCCC
Q 034078 45 DCGAACKARCQLSSRPNLCHRACGTCCARCKCVPPGTSG 83 (104)
Q Consensus 45 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~G 83 (104)
+|+++|..-|+.-.....|.+.|- +-|.| |+|+.=
T Consensus 12 ~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~vl 46 (60)
T d1hx2a_ 12 TCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTVL 46 (60)
T ss_dssp SSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCEE
T ss_pred cccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEeE
Confidence 688888888987666667776443 56778 888763
No 8
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.71 E-value=7.8 Score=22.89 Aligned_cols=16 Identities=25% Similarity=0.630 Sum_probs=11.9
Q ss_pred CCCCC---CCCC-Ccccccc
Q 034078 80 GTSGH---LEVC-PCYATMT 95 (104)
Q Consensus 80 GT~Gn---k~~C-pCY~~m~ 95 (104)
|.||| ...| .||+++.
T Consensus 7 GFyG~~~~~g~CSkCyr~~~ 26 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEY 26 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHH
Confidence 56665 5889 6999874
No 9
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=19.68 E-value=14 Score=20.25 Aligned_cols=21 Identities=33% Similarity=0.852 Sum_probs=14.1
Q ss_pred ccccCCCCCCCC-------CCCCccccc
Q 034078 74 CKCVPPGTSGHL-------EVCPCYATM 94 (104)
Q Consensus 74 C~CVP~GT~Gnk-------~~CpCY~~m 94 (104)
|+|-|.||.++. ..|+|-.+.
T Consensus 1 C~C~~~Gs~~~~~~Cd~~tGqC~Ck~~v 28 (51)
T d1kloa3 1 CACNPYGTVQQQSSCNPVTGQCQCLPHV 28 (51)
T ss_dssp CCCCTTTBGGGCCCCCTTTCCCCBCTTE
T ss_pred CcCCCCcccCCCCccCCCCCeecCCCCC
Confidence 788899887654 356665544
No 10
>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus, different strains [TaxId: 11520]}
Probab=19.66 E-value=7 Score=30.71 Aligned_cols=17 Identities=41% Similarity=0.952 Sum_probs=13.5
Q ss_pred CCCCCCCCCCCCc-cccc
Q 034078 78 PPGTSGHLEVCPC-YATM 94 (104)
Q Consensus 78 P~GT~Gnk~~CpC-Y~~m 94 (104)
++|..++.|||.| |.+.
T Consensus 191 l~g~~~HiEECSC~Yp~~ 208 (390)
T d1nsca_ 191 PTGRVEHTEECTCGFASN 208 (390)
T ss_dssp CEESCSBCEEEEEEESSS
T ss_pred cCCCcCceEeeeccCCCC
Confidence 5688889999999 7654
Done!