Query 034079
Match_columns 104
No_of_seqs 104 out of 179
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 16:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034079.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034079hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 77.4 1.8 0.00013 19.2 3.2 18 72-89 5-22 (26)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 63.5 5 0.00037 19.3 3.3 20 70-89 6-25 (37)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 33.5 21 0.0015 16.1 3.4 18 70-88 12-29 (32)
4 d2iuba2 f.17.3.1 (A:286-349) M 29.4 12 0.00087 19.5 1.5 15 14-28 7-21 (64)
5 d1ewsa_ g.9.1.1 (A:) Alpha-def 24.5 6.7 0.00049 17.8 -0.2 8 97-104 8-15 (32)
6 d1q90g_ f.23.26.1 (G:) PetG su 21.1 25 0.0018 15.8 1.5 17 15-31 5-21 (30)
7 d2e74h1 f.23.27.1 (H:3-29) Pet 19.6 39 0.0029 14.5 2.1 8 74-81 2-9 (27)
8 d1iwga8 f.35.1.1 (A:513-566,A: 14.8 19 0.0014 23.0 0.4 22 16-37 200-221 (222)
9 d1h2sa_ f.13.1.1 (A:) Sensory 13.2 76 0.0055 20.1 3.1 18 7-24 120-137 (225)
10 d2pg3a1 c.26.2.1 (A:1-230) Que 11.6 37 0.0027 21.0 1.0 13 43-55 196-209 (230)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=77.45 E-value=1.8 Score=19.23 Aligned_cols=18 Identities=33% Similarity=0.932 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034079 72 LSLVLLWVIMIILIYYIK 89 (104)
Q Consensus 72 i~lv~gW~l~~~L~y~i~ 89 (104)
+.+-+.|+.++.|+|.+.
T Consensus 5 laiw~fw~ffalli~ylq 22 (26)
T d1rzhh2 5 LAIYSFWIFLAGLIYYLQ 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345568999999999986
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=63.48 E-value=5 Score=19.35 Aligned_cols=20 Identities=20% Similarity=0.713 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 034079 70 SNLSLVLLWVIMIILIYYIK 89 (104)
Q Consensus 70 ~~i~lv~gW~l~~~L~y~i~ 89 (104)
.-+++-+.|+.|+.|++.+.
T Consensus 6 Aql~ly~Fw~FFagLi~YL~ 25 (37)
T d1eysh2 6 AQITIWAFWLFFFGLIIYLR 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34667789999999999875
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=33.54 E-value=21 Score=16.13 Aligned_cols=18 Identities=22% Similarity=0.277 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034079 70 SNLSLVLLWVIMIILIYYI 88 (104)
Q Consensus 70 ~~i~lv~gW~l~~~L~y~i 88 (104)
..-++.+||.+-+.| .+|
T Consensus 12 sfglifvgwglgall-lki 29 (32)
T d2e74f1 12 SFGLIFVGWGLGVLL-LKI 29 (32)
T ss_dssp HHHHHHHHHHHHHHH-HHH
T ss_pred HhhHHHHHhHHHHHH-hhh
Confidence 455677899998777 444
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=29.35 E-value=12 Score=19.48 Aligned_cols=15 Identities=40% Similarity=0.578 Sum_probs=13.2
Q ss_pred HHHHHHhhhhhhhhh
Q 034079 14 FILTIMALPLVPYTI 28 (104)
Q Consensus 14 Fvlt~l~lvLiP~T~ 28 (104)
-.+|.++.+.+|+|.
T Consensus 7 k~lT~it~iflP~t~ 21 (64)
T d2iuba2 7 KVLTIIATIFMPLTF 21 (64)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 368999999999997
No 5
>d1ewsa_ g.9.1.1 (A:) Alpha-defensin rk-1 {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=24.48 E-value=6.7 Score=17.81 Aligned_cols=8 Identities=25% Similarity=0.106 Sum_probs=5.4
Q ss_pred ccCCcccC
Q 034079 97 NMGPQIQI 104 (104)
Q Consensus 97 ~fDPyei~ 104 (104)
--||+|+|
T Consensus 8 ycdpwevi 15 (32)
T d1ewsa_ 8 YCDPWEVI 15 (32)
T ss_dssp SCCTTEEE
T ss_pred ccChhhee
Confidence 45888765
No 6
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=21.13 E-value=25 Score=15.76 Aligned_cols=17 Identities=47% Similarity=0.567 Sum_probs=11.0
Q ss_pred HHHHHhhhhhhhhhhhh
Q 034079 15 ILTIMALPLVPYTILKL 31 (104)
Q Consensus 15 vlt~l~lvLiP~T~~~l 31 (104)
+++-+.+=|||.|+.=+
T Consensus 5 ll~GivlGlipiTl~Gl 21 (30)
T d1q90g_ 5 LLCGIVLGLVPVTIAGL 21 (30)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHhhHHHHHHHH
Confidence 34555667889887543
No 7
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=19.61 E-value=39 Score=14.52 Aligned_cols=8 Identities=50% Similarity=0.775 Sum_probs=5.0
Q ss_pred HHHHHHHH
Q 034079 74 LVLLWVIM 81 (104)
Q Consensus 74 lv~gW~l~ 81 (104)
+++||+.+
T Consensus 2 ~~lgwv~l 9 (27)
T d2e74h1 2 DVLGWVAL 9 (27)
T ss_dssp HHHHHHHH
T ss_pred cchhHhHH
Confidence 45677654
No 8
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=14.84 E-value=19 Score=23.04 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=15.4
Q ss_pred HHHHhhhhhhhhhhhhhccccc
Q 034079 16 LTIMALPLVPYTILKLCHAFSK 37 (104)
Q Consensus 16 lt~l~lvLiP~T~~~l~~~~~~ 37 (104)
-+++++.++|.-+..+.|+.++
T Consensus 200 s~~~~l~~~Pal~~l~~r~~~r 221 (222)
T d1iwga8 200 ATVLAIFFVPVFFVVVRRRFSR 221 (222)
T ss_dssp HHTTTTSSSSSSHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 3556788899998887655443
No 9
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=13.22 E-value=76 Score=20.15 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=13.1
Q ss_pred CCCchhHHHHHHHhhhhh
Q 034079 7 NSQLFPIFILTIMALPLV 24 (104)
Q Consensus 7 ~g~~f~yFvlt~l~lvLi 24 (104)
+..-|.+|+++..+.+-+
T Consensus 120 ~~~~~~~f~~s~~~~~~i 137 (225)
T d1h2sa_ 120 GIERYALFGMGAVAFLGL 137 (225)
T ss_dssp STHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHH
Confidence 445688898888777666
No 10
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=11.58 E-value=37 Score=20.96 Aligned_cols=13 Identities=31% Similarity=0.787 Sum_probs=8.9
Q ss_pred cc-ccccchhhHHH
Q 034079 43 HC-QCSDCARSGKY 55 (104)
Q Consensus 43 ~~-~~~~~~~~~~~ 55 (104)
+| +|..|...+..
T Consensus 196 ~CG~C~~C~~R~~a 209 (230)
T d2pg3a1 196 GCGQCAACHLRANG 209 (230)
T ss_dssp TTSCSHHHHHHHHH
T ss_pred CCCCCHhHHHHHHH
Confidence 56 88888875544
Done!