BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034082
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GO6|B Chain B, Crystal Structure Of Hcf-1 Self-Association Sequence 1
pdb|4GO6|D Chain D, Crystal Structure Of Hcf-1 Self-Association Sequence 1
Length = 232
Score = 28.9 bits (63), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 30 MPTMEEMRAQEVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGP 79
+P +++ QE+ A + +G+ C + ++ C+PG G P
Sbjct: 42 VPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAP 91
>pdb|1FNS|A Chain A, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain I546v Mutant In Complex With The Function
Blocking Fab Nmc4
Length = 196
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 12 NGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAV 47
+GSS E E ++AF + ME +R + W AV
Sbjct: 14 DGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAV 49
>pdb|1IJB|A Chain A, The Von Willebrand Factor Mutant (I546v) A1 Domain
pdb|1IJK|A Chain A, The Von Willebrand Factor Mutant (I546v) A1 Domain-
Botrocetin Complex
Length = 202
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 12 NGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASG 53
+GSS E E ++AF + ME +R + W AV G
Sbjct: 21 DGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDG 62
>pdb|1M10|A Chain A, Crystal Structure Of The Complex Of Glycoprotein Ib
Alpha And The Von Willebrand Factor A1 Domain
Length = 208
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 12 NGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASG 53
+GSS E E ++AF + ME++R + W AV G
Sbjct: 23 DGSSRLSEAEFEVLKAFVVDMMEQLRISQKWVRVAVVEYHDG 64
>pdb|1SQ0|A Chain A, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha
At 2.6 Angstrom Resolution
Length = 214
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 12 NGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASG 53
+GSS E E ++AF + ME +R + W AV G
Sbjct: 25 DGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDG 66
>pdb|1OAK|A Chain A, Crystal Structure Of The Von Willebrand Factor (Vwf) A1
Domain In Complex With The Function Blocking Nmc-4 Fab
Length = 196
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 12 NGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAV 47
+GSS E E ++AF + ME +R + W AV
Sbjct: 14 DGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAV 49
>pdb|2WVY|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVY|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVY|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW2|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt2199
From Bacteroides Thetaiotaomicron Vpi-5482
Length = 737
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 37 RAQEVWNNCAVRSVASGVMECSLILYYNSCIYR 69
+A+E WNN R A G + L +Y SC+YR
Sbjct: 262 KAREQWNNYLGRVEAEGGTDEQLRTFY-SCLYR 293
>pdb|1U0N|A Chain A, The Ternary Von Willebrand Factor A1-Glycoprotein
Ibalpha- Botrocetin Complex
pdb|1AUQ|A Chain A, A1 Domain Of Von Willebrand Factor
Length = 208
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 12 NGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASG 53
+GSS E E ++AF + ME +R + W AV G
Sbjct: 23 DGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDG 64
>pdb|1UEX|C Chain C, Crystal Structure Of Von Willebrand Factor A1 Domain
Complexed With Snake Venom Bitiscetin
pdb|3HXO|A Chain A, Crystal Structure Of Von Willebrand Factor (Vwf) A1
Domain In Complex With Dna Aptamer Arc1172, An
Inhibitor Of Vwf-Platelet Binding
pdb|3HXQ|A Chain A, Crystal Structure Of Von Willebrand Factor (Vwf) A1
Domain In Complex With Dna Aptamer Arc1172, An
Inhibitor Of Vwf-Platelet Binding
Length = 209
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 12 NGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASG 53
+GSS E E ++AF + ME +R + W AV G
Sbjct: 24 DGSSRLSEAEFEVLKAFVVDMMERLRISQKWVRVAVVEYHDG 65
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,787,594
Number of Sequences: 62578
Number of extensions: 84419
Number of successful extensions: 109
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 10
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)