BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034082
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A2RVP7|TI221_ARATH Mitochondrial import inner membrane translocase subunit TIM22-1
OS=Arabidopsis thaliana GN=TIM22-1 PE=2 SV=1
Length = 173
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 39 QEVWNNCAVRSVASGVMECSLILY---------YNSCIYRCCIPGD---SGGPKAACAGC 86
Q WN+C +V V + + N+ I C G GGPKAAC GC
Sbjct: 96 QRSWNSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGPKAACIGC 155
Query: 87 AGFAAFSVLIEKFLDRHT 104
AGFA FSVLIEKF DRHT
Sbjct: 156 AGFATFSVLIEKFFDRHT 173
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 1 MASSNPETESNNGSS--IAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVAS 52
MA S+ + SS +A + QI+ RMPT+EE+RAQEVWNNCAVR+V S
Sbjct: 1 MADSSAAEPTTGASSPPVASDENSTQIQPIRMPTIEEIRAQEVWNNCAVRAVTS 54
>sp|A1XJK0|TI224_ARATH Mitochondrial import inner membrane translocase subunit TIM22-4
OS=Arabidopsis thaliana GN=TIM22-4 PE=2 SV=3
Length = 142
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 44/85 (51%), Gaps = 13/85 (15%)
Query: 32 TMEEMRAQEVWNNCAVRSVASGVMECSLILY---------YNSCIYRCCIPGD---SGGP 79
T ++M Q WN+C +V V + + N+ I C G GGP
Sbjct: 59 TAKQM-GQRSWNSCKTFAVMGLVFSAAECIVEKARAKHDTVNTAIAGCVTGGSMSARGGP 117
Query: 80 KAACAGCAGFAAFSVLIEKFLDRHT 104
KAAC GCAGFA FSVLIEKF DRHT
Sbjct: 118 KAACIGCAGFAIFSVLIEKFFDRHT 142
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/23 (82%), Positives = 22/23 (95%)
Query: 30 MPTMEEMRAQEVWNNCAVRSVAS 52
MPT+EE+RAQEVWNNCAVR+V S
Sbjct: 1 MPTIEEIRAQEVWNNCAVRAVTS 23
>sp|Q5M7K0|TIM22_XENTR Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus tropicalis GN=timm22 PE=2 SV=1
Length = 186
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 14 SSIAKEPEKPQIEAFRMPTMEEM------RAQEVWNNCAVRSVASGVMECSLILYY---- 63
+++ +P+ P +R PT +E+ R N A+ EC + Y
Sbjct: 88 TNVGFDPKDP----YRTPTAKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSD 143
Query: 64 --NSCIYRCCIPGDSG---GPKAACAGCAGFAAFSVLIEKFL 100
NS I C G G G KA GC GFAAFS +I+ +L
Sbjct: 144 WKNSVISGCITGGAIGFRAGLKAGALGCGGFAAFSAVIDYYL 185
>sp|Q6BT35|TIM22_DEBHA Mitochondrial import inner membrane translocase subunit TIM22
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=TIM22 PE=3 SV=1
Length = 182
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 10 SNNGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASGVMECSL-ILYYNSCIY 68
+N S+I P K Q++ + M + N + V SGV EC++ L IY
Sbjct: 71 TNAVSNIRDLPFKQQMK-LQFSDMGKRTYSSAKNFGYIGMVYSGV-ECAIESLRAKHDIY 128
Query: 69 RC----CIPGDS----GGPKAACAGCAGFAAFSVLIEKFL 100
CI G GP+AA GCAGFAAFS I+ +L
Sbjct: 129 NGVSAGCITGGGLAIRAGPQAALVGCAGFAAFSTAIDLYL 168
>sp|Q9Y584|TIM22_HUMAN Mitochondrial import inner membrane translocase subunit Tim22
OS=Homo sapiens GN=TIMM22 PE=1 SV=2
Length = 194
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 19/102 (18%)
Query: 14 SSIAKEPEKPQIEAFRMPTMEEM------RAQEVWNNCAVRSVASGVMECSLILYY---- 63
+++ +P+ P +R PT +E+ R N A+ EC + Y
Sbjct: 96 TNVGFDPKDP----YRTPTAKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLIESYRGTSD 151
Query: 64 --NSCIYRCCIPGDSG---GPKAACAGCAGFAAFSVLIEKFL 100
NS I C G G G KA GC GFAAFS I+ +L
Sbjct: 152 WKNSVISGCITGGAIGFRAGLKAGAIGCGGFAAFSAAIDYYL 193
>sp|Q9CQ85|TIM22_MOUSE Mitochondrial import inner membrane translocase subunit Tim22
OS=Mus musculus GN=Timm22 PE=2 SV=1
Length = 194
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 19/102 (18%)
Query: 14 SSIAKEPEKPQIEAFRMPTMEEM------RAQEVWNNCAVRSVASGVMECSLILYY---- 63
+++ +P+ P +R PT +E+ R N A+ EC + Y
Sbjct: 96 TNVGFDPKDP----YRTPTAKEVLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSD 151
Query: 64 --NSCIYRCCIPGDSG---GPKAACAGCAGFAAFSVLIEKFL 100
NS I C G G G KA GC GFAAFS I+ +L
Sbjct: 152 WKNSVISGCITGGAIGFRAGVKAGAIGCGGFAAFSAAIDYYL 193
>sp|Q9JKW1|TIM22_RAT Mitochondrial import inner membrane translocase subunit Tim22
OS=Rattus norvegicus GN=Timm22 PE=2 SV=2
Length = 192
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 14 SSIAKEPEKPQIEAFRMPTMEEM------RAQEVWNNCAVRSVASGVMECSLILYY---- 63
+++ +P+ P +R PT E+ R N A+ EC + Y
Sbjct: 94 TNVGFDPKDP----YRTPTAREVLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSD 149
Query: 64 --NSCIYRCCIPGDSG---GPKAACAGCAGFAAFSVLIEKFL 100
NS I C G G G KA GC GFAAFS I+ +L
Sbjct: 150 WKNSVISGCITGGAIGFRAGVKAGAIGCGGFAAFSAAIDYYL 191
>sp|Q5BIN4|TIM22_BOVIN Mitochondrial import inner membrane translocase subunit Tim22
OS=Bos taurus GN=TIMM22 PE=2 SV=1
Length = 194
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 14 SSIAKEPEKPQIEAFRMPTMEEM------RAQEVWNNCAVRSVASGVMECSLILYY---- 63
+++ +P+ P +R PT E+ R N A+ EC + Y
Sbjct: 96 TNVGFDPKDP----YRTPTAREVLKDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSD 151
Query: 64 --NSCIYRCCIPGDSG---GPKAACAGCAGFAAFSVLIEKFL 100
NS I C G G G KA GC GFAAFS I+ +L
Sbjct: 152 WKNSVISGCITGGAIGFRAGLKAGVIGCGGFAAFSAAIDYYL 193
>sp|Q6BZY4|TIM22_YARLI Mitochondrial import inner membrane translocase subunit TIM22
OS=Yarrowia lipolytica (strain CLIB 122 / E 150)
GN=TIM22 PE=3 SV=2
Length = 185
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 19/69 (27%)
Query: 33 MEEMRAQ-EVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKAACAGCAGFAA 91
+E +RA+ ++WN A + G + GP+AA GCAGFAA
Sbjct: 121 IESLRAKNDIWNGVAAGCLTGGGLAVKA------------------GPQAALVGCAGFAA 162
Query: 92 FSVLIEKFL 100
FS I+ ++
Sbjct: 163 FSAAIDVYM 171
>sp|Q5U4U5|TIM22_XENLA Mitochondrial import inner membrane translocase subunit Tim22
OS=Xenopus laevis GN=timm22 PE=2 SV=1
Length = 184
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 19/102 (18%)
Query: 14 SSIAKEPEKPQIEAFRMPTMEEM------RAQEVWNNCAVRSVASGVMECSLILY----- 62
+++ +P+ P R PT +E+ R N A+ EC + Y
Sbjct: 86 TNVGFDPKDP----LRTPTAKEVLRDMGQRGMSYAKNFAIVGAMFSCTECLVESYRGKSD 141
Query: 63 YNSCIYRCCIPGDS----GGPKAACAGCAGFAAFSVLIEKFL 100
+ + + CI G + G KA GC GFAAFS +I+ +L
Sbjct: 142 WKNSVMSGCITGGAIGFRAGLKAGVLGCGGFAAFSAVIDYYL 183
>sp|Q9C1E8|TIM22_NEUCR Mitochondrial import inner membrane translocase subunit tim-22
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=tim-22 PE=3 SV=2
Length = 194
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 20/25 (80%)
Query: 76 SGGPKAACAGCAGFAAFSVLIEKFL 100
+GGP+AA GCAGFAAFS I+ ++
Sbjct: 163 NGGPQAAAVGCAGFAAFSAAIDAWM 187
>sp|Q6CRJ6|TIM22_KLULA Mitochondrial import inner membrane translocase subunit TIM22
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM22
PE=3 SV=1
Length = 196
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 2 ASSNPETESNNGSSIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSVASGVMECSLIL 61
A +N N +A P K QI+ + M + N + + SGV EC +
Sbjct: 77 APTNAPGLPNKVKELADLPLKQQIK-IQFSDMGKRSYSSAKNFGYIGMIYSGV-ECVVES 134
Query: 62 Y------YNSCIYRCCIPGD---SGGPKAACAGCAGFAAFSVLIEKFL 100
YN C G GP+AA GCAGFAAFS I+ ++
Sbjct: 135 LRAKNDIYNGVAAGCLTGGGLAYKSGPQAALVGCAGFAAFSTAIDLYM 182
>sp|Q6FT37|TIM22_CANGA Mitochondrial import inner membrane translocase subunit TIM22
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=TIM22 PE=3 SV=1
Length = 193
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 63 YNSCIYRCCIPGD---SGGPKAACAGCAGFAAFSVLIEKFL 100
YN C G GP+AA GCAGFAAFS I+ ++
Sbjct: 139 YNGITAGCITGGGLAYKSGPQAALVGCAGFAAFSAAIDMYM 179
>sp|Q75E80|TIM22_ASHGO Mitochondrial import inner membrane translocase subunit TIM22
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=TIM22 PE=3 SV=1
Length = 201
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 19/70 (27%)
Query: 32 TMEEMRAQ-EVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKAACAGCAGFA 90
T+E +RA+ +++N A + G L Y S GP AA GCAGFA
Sbjct: 136 TIESLRAKNDLYNGVAAGCLTGGG------LAYKS------------GPSAALIGCAGFA 177
Query: 91 AFSVLIEKFL 100
AFS I+ ++
Sbjct: 178 AFSTAIDLYM 187
>sp|Q54QM0|TIM22_DICDI Mitochondrial import inner membrane translocase subunit tim22
OS=Dictyostelium discoideum GN=timm22 PE=3 SV=1
Length = 179
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 67 IYRCCIPG----DSGGPKAACAGCAGFAAFSVLIEKFL 100
IY C G GP AA GC GFA F ++++ F+
Sbjct: 138 IYAGCTTGAVFAGRAGPMAAVGGCVGFAVFGMIMDHFM 175
>sp|Q9NAQ9|TIM22_CAEEL Mitochondrial import inner membrane translocase subunit tim-22
OS=Caenorhabditis elegans GN=tim-22 PE=3 SV=1
Length = 213
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 20 PEKPQIEAFRMPTMEEMRAQEVW-----NNCAVRSVASGVM 55
PE+ I+ +M T+ EM +E W NC V++ SGV+
Sbjct: 57 PERTPIKPIQMLTLPEMSREERWIQWGMENCTVKASISGVL 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.130 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,676,578
Number of Sequences: 539616
Number of extensions: 1284811
Number of successful extensions: 2773
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2754
Number of HSP's gapped (non-prelim): 20
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)