Query 034082
Match_columns 104
No_of_seqs 126 out of 154
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 09:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034082.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034082hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3225 Mitochondrial import i 99.9 9.1E-26 2E-30 171.7 7.3 84 21-104 14-168 (168)
2 TIGR00980 3a0801so1tim17 mitoc 98.8 2.5E-09 5.4E-14 81.3 2.9 36 63-98 87-126 (170)
3 COG5596 TIM22 Mitochondrial im 98.6 1.1E-08 2.3E-13 79.9 0.2 37 67-103 150-190 (191)
4 PF02466 Tim17: Tim17/Tim22/Ti 98.5 8.6E-08 1.9E-12 65.9 3.5 40 63-102 84-127 (128)
5 PTZ00236 mitochondrial import 98.5 1.2E-07 2.6E-12 72.0 3.0 39 63-101 89-138 (164)
6 TIGR00983 3a0801s02tim23 mitoc 97.7 2.5E-05 5.5E-10 58.0 2.7 32 63-94 112-147 (149)
7 KOG1652 Mitochondrial import i 97.4 3.9E-05 8.4E-10 59.8 0.5 33 67-99 91-127 (183)
8 PF04418 DUF543: Domain of unk 63.0 26 0.00056 23.7 5.0 26 37-62 17-42 (75)
9 COG4760 Predicted membrane pro 62.4 8.4 0.00018 31.9 3.0 23 76-98 208-232 (276)
10 PF10247 Romo1: Reactive mitoc 60.1 9.4 0.0002 25.6 2.4 44 43-92 1-58 (67)
11 KOG3324 Mitochondrial import i 56.9 4.5 9.7E-05 32.5 0.5 21 67-87 159-183 (206)
12 PF13370 Fer4_13: 4Fe-4S singl 40.2 11 0.00024 23.3 0.3 18 33-50 39-56 (58)
13 KOG4096 Uncharacterized conser 40.0 27 0.00058 24.2 2.2 46 42-93 4-63 (75)
14 PTZ00441 sporozoite surface pr 39.7 12 0.00026 33.8 0.6 9 82-90 523-531 (576)
15 PF13459 Fer4_15: 4Fe-4S singl 31.1 36 0.00077 21.0 1.6 22 29-50 42-63 (65)
16 PF10642 Tom5: Mitochondrial i 26.4 1.5E+02 0.0032 18.8 3.8 26 28-53 6-31 (49)
17 PF07519 Tannase: Tannase and 24.8 33 0.00071 29.4 0.8 16 67-82 118-133 (474)
18 PRK11280 hypothetical protein; 24.0 2E+02 0.0043 22.3 4.9 51 43-102 62-112 (170)
19 PRK10510 putative outer membra 21.9 87 0.0019 24.2 2.6 23 80-102 61-83 (219)
20 PF07051 OCIA: Ovarian carcino 21.6 3.3E+02 0.0072 19.9 8.7 74 23-103 18-105 (111)
No 1
>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=9.1e-26 Score=171.70 Aligned_cols=84 Identities=39% Similarity=0.613 Sum_probs=75.8
Q ss_pred CCccccccCCC----CHHHHHHHHHHhhhhhHHHhhhhhhhhHHHH----------------------------------
Q 034082 21 EKPQIEAFRMP----TMEEMRAQEVWNNCAVRSVASGVMECSLILY---------------------------------- 62 (104)
Q Consensus 21 e~~~~~~~~~~----t~ee~~~~~~mesC~~Ksv~SgVmG~gLG~~---------------------------------- 62 (104)
..|+..++.+| +++|.+.++.|+||++|+++|||+||+||+.
T Consensus 14 ~~p~~~~~l~pe~~~~~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~ 93 (168)
T KOG3225|consen 14 NSPKQYSLLTPEEVGDPTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRS 93 (168)
T ss_pred CCCccccccCccccCChHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhh
Confidence 44555566666 9999999999999999999999999999987
Q ss_pred -----------------------------hhhhhccccccCC----CCchhHHhhhhHHHHHHHHHHHHHhhhCC
Q 034082 63 -----------------------------YNSCIYRCCIPGD----SGGPKAACAGCAGFAAFSVLIEKFLDRHT 104 (104)
Q Consensus 63 -----------------------------~s~a~~aGc~TGg----~~Gp~Aa~~GcagFAAFS~aId~~m~~~~ 104 (104)
|.|++++||+||| ++||||+++||++|++||++||+|||.+.
T Consensus 94 ~s~~knF~~iGlvfsg~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raGp~a~~~G~agfa~fS~~id~y~~~~~ 168 (168)
T KOG3225|consen 94 GSYAKNFAIIGLVFSGVECLIESFRAKSDWYNGAIAGCVTGGSLGYRAGPKAAAIGCAGFAAFSAAIDKYMRGRE 168 (168)
T ss_pred cchhhhhhhhhhhehhHHHHHHHHHhhhchhcceeeeeeeccchhhcccchhhhhchhHHHHHHHHHHHhhhcCC
Confidence 6677999999999 99999999999999999999999999863
No 2
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=98.81 E-value=2.5e-09 Score=81.29 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=33.5
Q ss_pred hhhhhccccccCC----CCchhHHhhhhHHHHHHHHHHHH
Q 034082 63 YNSCIYRCCIPGD----SGGPKAACAGCAGFAAFSVLIEK 98 (104)
Q Consensus 63 ~s~a~~aGc~TGg----~~Gp~Aa~~GcagFAAFS~aId~ 98 (104)
|.|.++|||+||+ ++||++++.+|+.+++|+.+||+
T Consensus 87 ~~NsiiAG~~TGa~l~~r~G~~a~~~~aa~gg~~la~ie~ 126 (170)
T TIGR00980 87 PWNSIISGFLTGAALAVRGGPRAMRGSAILGACILAVIEG 126 (170)
T ss_pred hHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence 5556999999999 99999999999999999999996
No 3
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1.1e-08 Score=79.89 Aligned_cols=37 Identities=41% Similarity=0.512 Sum_probs=35.1
Q ss_pred hccccccCC----CCchhHHhhhhHHHHHHHHHHHHHhhhC
Q 034082 67 IYRCCIPGD----SGGPKAACAGCAGFAAFSVLIEKFLDRH 103 (104)
Q Consensus 67 ~~aGc~TGg----~~Gp~Aa~~GcagFAAFS~aId~~m~~~ 103 (104)
+.+|..||+ +.|||++.++-++|+|||..|+.||++.
T Consensus 150 iaaG~~TGa~~~~~~g~qa~~~~~a~~aa~s~~~~~~~~~~ 190 (191)
T COG5596 150 IAAGAFTGAALASSAGPQAMPMGGAGFAAFSAGITLAMKSE 190 (191)
T ss_pred hhhhhhhhHHHHhhccccccccCccchhhhhhhHHhhhhcc
Confidence 788999999 9999999999999999999999999875
No 4
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=98.52 E-value=8.6e-08 Score=65.92 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=36.2
Q ss_pred hhhhhccccccCC----CCchhHHhhhhHHHHHHHHHHHHHhhh
Q 034082 63 YNSCIYRCCIPGD----SGGPKAACAGCAGFAAFSVLIEKFLDR 102 (104)
Q Consensus 63 ~s~a~~aGc~TGg----~~Gp~Aa~~GcagFAAFS~aId~~m~~ 102 (104)
+.|.++|||+||+ +.||+.++.||+.|++|+.++|++++-
T Consensus 84 ~~N~~~aG~~aGa~~~~~~g~~~~~~~~~~~a~~~~~~~~~~~~ 127 (128)
T PF02466_consen 84 PWNSAIAGAAAGAVLGLRSGPRGMASGAALGAAFAAAVEYYGRM 127 (128)
T ss_pred cchhHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556999999999 889999999999999999999999863
No 5
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=98.45 E-value=1.2e-07 Score=71.96 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=33.9
Q ss_pred hhhhhccccccCC----CCchh----HHhhhhHH---HHHHHHHHHHHhh
Q 034082 63 YNSCIYRCCIPGD----SGGPK----AACAGCAG---FAAFSVLIEKFLD 101 (104)
Q Consensus 63 ~s~a~~aGc~TGg----~~Gp~----Aa~~Gcag---FAAFS~aId~~m~ 101 (104)
|.|.++|||+||+ ++||+ ++++||+. |.+||.+||+|+.
T Consensus 89 ~~Nsi~AG~~TGa~l~~r~G~~~~~~~a~~Gg~~~~~ie~~~i~~~~~~~ 138 (164)
T PTZ00236 89 HWNAIASGFFTGGVLAIRGGWRSAVRNAIFGGILLGIIELVSIGMNRRQM 138 (164)
T ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455999999999 99999 78888888 7889999999985
No 6
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=97.70 E-value=2.5e-05 Score=58.02 Aligned_cols=32 Identities=13% Similarity=0.003 Sum_probs=26.5
Q ss_pred hhhhhccccccCC----CCchhHHhhhhHHHHHHHH
Q 034082 63 YNSCIYRCCIPGD----SGGPKAACAGCAGFAAFSV 94 (104)
Q Consensus 63 ~s~a~~aGc~TGg----~~Gp~Aa~~GcagFAAFS~ 94 (104)
|.|.++|||+||+ ++|||+++.||+.=+.+..
T Consensus 112 ~~Nsv~AGa~TGal~~~~~G~r~~~~g~~~G~~l~~ 147 (149)
T TIGR00983 112 DFNSVAAGALTGALYKSTRGLRGMARSGALGATAAG 147 (149)
T ss_pred hhHhHHHHHHHHHHHHhccChHHHHHHhHHHHHHhh
Confidence 4445999999999 9999999999997665543
No 7
>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=3.9e-05 Score=59.83 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=31.3
Q ss_pred hccccccCC----CCchhHHhhhhHHHHHHHHHHHHH
Q 034082 67 IYRCCIPGD----SGGPKAACAGCAGFAAFSVLIEKF 99 (104)
Q Consensus 67 ~~aGc~TGg----~~Gp~Aa~~GcagFAAFS~aId~~ 99 (104)
+++||+||| ++||+|++-+|+.|++|.+.||-+
T Consensus 91 ivsGa~TGg~La~r~g~~a~~~sa~~~g~~lamieg~ 127 (183)
T KOG1652|consen 91 IVSGAATGGLLAARGGPKAMLTSAITGGLLLAMIEGL 127 (183)
T ss_pred HHHHhhccceeeccccHHHHHHHHHHHHHHHHHHHhH
Confidence 899999999 999999999999999999999853
No 8
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=63.02 E-value=26 Score=23.68 Aligned_cols=26 Identities=12% Similarity=0.328 Sum_probs=17.0
Q ss_pred HHHHHHhhhhhHHHhhhhhhhhHHHH
Q 034082 37 RAQEVWNNCAVRSVASGVMECSLILY 62 (104)
Q Consensus 37 ~~~~~mesC~~Ksv~SgVmG~gLG~~ 62 (104)
...+-++-|.-.+++=.+.|++.|.+
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~ 42 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVV 42 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 45566777777766666666666655
No 9
>COG4760 Predicted membrane protein [Function unknown]
Probab=62.38 E-value=8.4 Score=31.86 Aligned_cols=23 Identities=48% Similarity=0.797 Sum_probs=19.9
Q ss_pred CCchhHHhhh--hHHHHHHHHHHHH
Q 034082 76 SGGPKAACAG--CAGFAAFSVLIEK 98 (104)
Q Consensus 76 ~~Gp~Aa~~G--cagFAAFS~aId~ 98 (104)
.+||.+.++. |.+-||||..+|.
T Consensus 208 ~gG~~~IiFSLfcigiAAf~fllDF 232 (276)
T COG4760 208 SGGPFGIIFSLFCIGIAAFSFLLDF 232 (276)
T ss_pred CCCceEeeHHHHHHHHHHHHHHhhh
Confidence 8899988754 9999999999884
No 10
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=60.13 E-value=9.4 Score=25.57 Aligned_cols=44 Identities=16% Similarity=0.000 Sum_probs=29.7
Q ss_pred hhhhhHHHhhhhhhhhHHHHhhhhhccccccCC--------------CCchhHHhhhhHHHHHH
Q 034082 43 NNCAVRSVASGVMECSLILYYNSCIYRCCIPGD--------------SGGPKAACAGCAGFAAF 92 (104)
Q Consensus 43 esC~~Ksv~SgVmG~gLG~~~s~a~~aGc~TGg--------------~~Gp~Aa~~GcagFAAF 92 (104)
+||.-|--|...||+.+|.. .|.+.|. +.=+|.++.+.+.|+-|
T Consensus 1 psc~~kikmG~~MG~~VG~~------~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~F 58 (67)
T PF10247_consen 1 PSCFDKIKMGFMMGGAVGGA------FGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFF 58 (67)
T ss_pred CcHHHHHHHHHHHhhHHHhh------hhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHH
Confidence 47888888888888888764 2233333 23347788888888766
No 11
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.86 E-value=4.5 Score=32.46 Aligned_cols=21 Identities=24% Similarity=0.348 Sum_probs=18.5
Q ss_pred hccccccCC----CCchhHHhhhhH
Q 034082 67 IYRCCIPGD----SGGPKAACAGCA 87 (104)
Q Consensus 67 ~~aGc~TGg----~~Gp~Aa~~Gca 87 (104)
|.||..||. ..|++++..+.+
T Consensus 159 v~AGalTGalyrs~~Glr~~av~ga 183 (206)
T KOG3324|consen 159 VAAGALTGALYRSTRGLRAAAVAGA 183 (206)
T ss_pred hhhhhhhhhhhhcCCCchHHHHHHH
Confidence 899999999 889999887754
No 12
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=40.21 E-value=11 Score=23.26 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhhhhhHHH
Q 034082 33 MEEMRAQEVWNNCAVRSV 50 (104)
Q Consensus 33 ~ee~~~~~~mesC~~Ksv 50 (104)
.++..+.+++++|++.++
T Consensus 39 ~~~~~~~~A~~~CP~~aI 56 (58)
T PF13370_consen 39 EEEEAAREAAESCPTAAI 56 (58)
T ss_dssp CHHHHHHHHHHHSTT--E
T ss_pred HHHHHHHHHHHcCCHhhc
Confidence 345679999999998764
No 13
>KOG4096 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.04 E-value=27 Score=24.22 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=31.0
Q ss_pred HhhhhhHHHhhhhhhhhHHHHhhhhhccccccCC----CCch----------hHHhhhhHHHHHHH
Q 034082 42 WNNCAVRSVASGVMECSLILYYNSCIYRCCIPGD----SGGP----------KAACAGCAGFAAFS 93 (104)
Q Consensus 42 mesC~~Ksv~SgVmG~gLG~~~s~a~~aGc~TGg----~~Gp----------~Aa~~GcagFAAFS 93 (104)
..||.-|.-|..+||+.+|.. .|..-|+ |.|| |-.+.+.+.|..|=
T Consensus 4 qpSc~dKikmG~~mG~avG~a------~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM 63 (75)
T KOG4096|consen 4 QPSCFDKIKMGLMMGGAVGGA------TGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFM 63 (75)
T ss_pred CccHHHHHHHHHHHHhhhhhh------hhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhh
Confidence 468999999999999888874 1222233 4443 56777777787763
No 14
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=39.71 E-value=12 Score=33.79 Aligned_cols=9 Identities=67% Similarity=1.302 Sum_probs=7.8
Q ss_pred HhhhhHHHH
Q 034082 82 ACAGCAGFA 90 (104)
Q Consensus 82 a~~GcagFA 90 (104)
|++||+|||
T Consensus 523 a~~~~~g~~ 531 (576)
T PTZ00441 523 ALVGCVGFA 531 (576)
T ss_pred HHhhhhhhh
Confidence 688999997
No 15
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=31.13 E-value=36 Score=21.00 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.2
Q ss_pred CCCCHHHHHHHHHHhhhhhHHH
Q 034082 29 RMPTMEEMRAQEVWNNCAVRSV 50 (104)
Q Consensus 29 ~~~t~ee~~~~~~mesC~~Ksv 50 (104)
++|..++..++++.+.|+++.+
T Consensus 42 ~v~~~~~~~~~~Aa~~CP~~aI 63 (65)
T PF13459_consen 42 EVPEEDEEDVREAAEACPVGAI 63 (65)
T ss_pred CCCchhHHHHHHHHHhCCHhhE
Confidence 5677777789999999999875
No 16
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=26.44 E-value=1.5e+02 Score=18.77 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=18.7
Q ss_pred cCCCCHHHHHHHHHHhhhhhHHHhhh
Q 034082 28 FRMPTMEEMRAQEVWNNCAVRSVASG 53 (104)
Q Consensus 28 ~~~~t~ee~~~~~~mesC~~Ksv~Sg 53 (104)
-+.|++||++..+.--+=.+|.+..+
T Consensus 6 ~~qpS~eE~k~~e~~A~~Tvk~a~~~ 31 (49)
T PF10642_consen 6 PPQPSEEEIKAAEAQANFTVKNAAAA 31 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999998877776666665544
No 17
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=24.77 E-value=33 Score=29.41 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=14.3
Q ss_pred hccccccCCCCchhHH
Q 034082 67 IYRCCIPGDSGGPKAA 82 (104)
Q Consensus 67 ~~aGc~TGg~~Gp~Aa 82 (104)
-+.||.||||.|.+++
T Consensus 118 Y~~GcS~GGRqgl~~A 133 (474)
T PF07519_consen 118 YFSGCSTGGRQGLMAA 133 (474)
T ss_pred EEEEeCCCcchHHHHH
Confidence 7899999999998875
No 18
>PRK11280 hypothetical protein; Provisional
Probab=24.04 E-value=2e+02 Score=22.30 Aligned_cols=51 Identities=24% Similarity=0.120 Sum_probs=31.8
Q ss_pred hhhhhHHHhhhhhhhhHHHHhhhhhccccccCCCCchhHHhhhhHHHHHHHHHHHHHhhh
Q 034082 43 NNCAVRSVASGVMECSLILYYNSCIYRCCIPGDSGGPKAACAGCAGFAAFSVLIEKFLDR 102 (104)
Q Consensus 43 esC~~Ksv~SgVmG~gLG~~~s~a~~aGc~TGg~~Gp~Aa~~GcagFAAFS~aId~~m~~ 102 (104)
++...-+++.++.|+++|. -+.||++=-.|.++|.+.=+...-.|+.-|++
T Consensus 62 ~~~~~Gtv~Gav~Gg~~G~---------~iGgG~Gr~~at~~Ga~~G~~~G~~i~~~~~~ 112 (170)
T PRK11280 62 ENRIAGSVLGAVAGGVLGH---------QFGGGRGKDVATVAGALGGGYAGNQIQGGMQE 112 (170)
T ss_pred CCcchhHHHHHHHHHHhhh---------hccCCCccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555666666666666666 34445554556677776666666677776653
No 19
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=21.95 E-value=87 Score=24.20 Aligned_cols=23 Identities=30% Similarity=0.275 Sum_probs=14.2
Q ss_pred hHHhhhhHHHHHHHHHHHHHhhh
Q 034082 80 KAACAGCAGFAAFSVLIEKFLDR 102 (104)
Q Consensus 80 ~Aa~~GcagFAAFS~aId~~m~~ 102 (104)
+.+++|.+.=++...+|-+||+.
T Consensus 61 ~~a~~ga~~G~~~G~~~g~~~d~ 83 (219)
T PRK10510 61 KGALIGAAAGAALGGGVGYYMDV 83 (219)
T ss_pred chhhhHhHHHhhhhhhhhhhhhh
Confidence 44555555446677777777764
No 20
>PF07051 OCIA: Ovarian carcinoma immunoreactive antigen (OCIA); InterPro: IPR009764 This family consists of several ovarian carcinoma immunoreactive antigen (OCIA) and related eukaryotic sequences. The function of this family is unknown [,].
Probab=21.58 E-value=3.3e+02 Score=19.87 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=39.9
Q ss_pred ccccccCCCCHHHHHH------HHHHhhhhhHHHhhhhhhhhHHHHhhhhhccccccCC---CCchhHHhhhhHHHHH--
Q 034082 23 PQIEAFRMPTMEEMRA------QEVWNNCAVRSVASGVMECSLILYYNSCIYRCCIPGD---SGGPKAACAGCAGFAA-- 91 (104)
Q Consensus 23 ~~~~~~~~~t~ee~~~------~~~mesC~~Ksv~SgVmG~gLG~~~s~a~~aGc~TGg---~~Gp~Aa~~GcagFAA-- 91 (104)
+.......+|+||+++ +.+|--|.-=++.++++ -..++..|..+.- .+-||-++.|=.||.+
T Consensus 18 ~~~~~~~~~T~EE~kvlrEC~~ESFwyRslPls~~s~~~-------t~~lv~~G~l~~~~rfG~~PKv~~ag~~Gy~~GK 90 (111)
T PF07051_consen 18 PHPGMPYQLTEEERKVLRECNEESFWYRSLPLSAGSMLV-------TQGLVKKGYLKSSPRFGSLPKVAFAGILGYFVGK 90 (111)
T ss_pred CCCCcCccCCHHHHHHHHHHHHhhhHhccCcHHHHHHHH-------HHHHHHcCcccCCCccccccHHHHHHHHHHhhhH
Confidence 3444556778888763 22333333333332222 1222556666665 4567888777767544
Q ss_pred ---HHHHHHHHhhhC
Q 034082 92 ---FSVLIEKFLDRH 103 (104)
Q Consensus 92 ---FS~aId~~m~~~ 103 (104)
....-|+||+-+
T Consensus 91 ~SY~~~C~eKf~~L~ 105 (111)
T PF07051_consen 91 ISYQGTCQEKFMQLP 105 (111)
T ss_pred HHHHHHHHHHHHhCc
Confidence 345667777643
Done!