Query 034082
Match_columns 104
No_of_seqs 126 out of 154
Neff 3.1
Searched_HMMs 29240
Date Mon Mar 25 16:13:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034082.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034082hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2imj_A Hypothetical protein DU 19.8 51 0.0017 24.7 1.9 35 18-52 4-41 (166)
2 3mmy_B Nuclear pore complex pr 12.9 1.5E+02 0.0051 18.5 2.5 21 23-43 33-53 (56)
3 1wj7_A Hypothetical protein (R 8.7 5E+02 0.017 17.6 4.3 19 24-42 13-31 (104)
4 1scf_A Stem cell factor; steel 8.3 79 0.0027 25.4 0.0 17 46-62 219-235 (273)
5 4h62_V Mediator of RNA polymer 7.8 3E+02 0.01 15.2 2.3 17 33-49 9-25 (31)
6 1rh5_C Secbeta; protein transl 6.2 5.1E+02 0.017 15.5 3.0 23 76-98 27-49 (53)
7 2eje_A General transcription f 5.9 2.4E+02 0.0082 19.9 1.5 36 15-50 3-38 (114)
8 4dox_A Coat protein; all helix 5.8 4.3E+02 0.015 20.2 3.1 29 19-47 151-179 (226)
9 2ks1_B Epidermal growth factor 5.4 5.4E+02 0.018 14.8 3.3 25 79-103 13-38 (44)
10 2l2t_A Receptor tyrosine-prote 5.3 5.5E+02 0.019 14.9 3.5 23 81-103 14-37 (44)
No 1
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Probab=19.80 E-value=51 Score=24.72 Aligned_cols=35 Identities=20% Similarity=0.328 Sum_probs=23.6
Q ss_pred CCCCCccccccCCCCHHHH--HHHHHHhh-hhhHHHhh
Q 034082 18 KEPEKPQIEAFRMPTMEEM--RAQEVWNN-CAVRSVAS 52 (104)
Q Consensus 18 ~~~e~~~~~~~~~~t~ee~--~~~~~mes-C~~Ksv~S 52 (104)
++..+++++||..-|.-+| ..++.+|| ++.|.+++
T Consensus 4 ~~~~rpplPPFt~EtA~~KVr~AEDaWNsrdP~rValA 41 (166)
T 2imj_A 4 NAQVRPPLPPFTRESAIEKIRLAEDGWNSRDPERVSLA 41 (166)
T ss_dssp -CCCCSSCSSCCHHHHHHHHHHHHHHHTTTCHHHHHTT
T ss_pred CCcCCCCCCCCCHHHHHHHHHHHHhhhcccChHHHhhc
Confidence 4556778888877764444 48999999 66666553
No 2
>3mmy_B Nuclear pore complex protein NUP98; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=12.86 E-value=1.5e+02 Score=18.51 Aligned_cols=21 Identities=14% Similarity=0.401 Sum_probs=17.4
Q ss_pred ccccccCCCCHHHHHHHHHHh
Q 034082 23 PQIEAFRMPTMEEMRAQEVWN 43 (104)
Q Consensus 23 ~~~~~~~~~t~ee~~~~~~me 43 (104)
..+++.+-.+.||+|.++.+.
T Consensus 33 s~M~~Y~~~S~EELR~eDY~~ 53 (56)
T 3mmy_B 33 TAMKEYESKSLEELRLEDYQA 53 (56)
T ss_dssp GGSTTTTTSCHHHHHHHHHHT
T ss_pred ecchhhhcCCHHHHHHHHHHc
Confidence 467788889999999998764
No 3
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=8.67 E-value=5e+02 Score=17.64 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=12.4
Q ss_pred cccccCCCCHHHHHHHHHH
Q 034082 24 QIEAFRMPTMEEMRAQEVW 42 (104)
Q Consensus 24 ~~~~~~~~t~ee~~~~~~m 42 (104)
+-.+...||.|++++.+..
T Consensus 13 ~~~~~~~aTaeQ~rLAq~i 31 (104)
T 1wj7_A 13 QHKQRPQATAEQIRLAQMI 31 (104)
T ss_dssp TTCCSSSSSHHHHHHHHHH
T ss_pred ccccccccCHHHHHHHHHH
Confidence 3345567899998855543
No 4
>1scf_A Stem cell factor; steel factor, KIT ligand, MAST cell growth factor, hormone/growth factor complex; HET: 1PE; 2.20A {Homo sapiens} SCOP: a.26.1.2 PDB: 1exz_A 2e9w_C* 2o27_A 2o26_A
Probab=8.26 E-value=79 Score=25.35 Aligned_cols=17 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred hhHHHhhhhhhhhHHHH
Q 034082 46 AVRSVASGVMECSLILY 62 (104)
Q Consensus 46 ~~Ksv~SgVmG~gLG~~ 62 (104)
+.-+..|-|+||.+|++
T Consensus 219 ~l~al~slvigf~~ga~ 235 (273)
T 1scf_A 219 ALPALFSLIIGFAFGAL 235 (273)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45677899999999998
No 5
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=7.75 E-value=3e+02 Score=15.19 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhhhHH
Q 034082 33 MEEMRAQEVWNNCAVRS 49 (104)
Q Consensus 33 ~ee~~~~~~mesC~~Ks 49 (104)
.+|+.+++..+||.-..
T Consensus 9 fdekqieelldncietf 25 (31)
T 4h62_V 9 FDEKQIEELLDNCIETF 25 (31)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 45788999999997543
No 6
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=6.20 E-value=5.1e+02 Score=15.49 Aligned_cols=23 Identities=9% Similarity=0.157 Sum_probs=20.1
Q ss_pred CCchhHHhhhhHHHHHHHHHHHH
Q 034082 76 SGGPKAACAGCAGFAAFSVLIEK 98 (104)
Q Consensus 76 ~~Gp~Aa~~GcagFAAFS~aId~ 98 (104)
+=+|+..+.-|..|.++-.++..
T Consensus 27 Ki~P~~Vl~~si~~i~~V~~L~~ 49 (53)
T 1rh5_C 27 RVKPEHVIGVTVAFVIIEAILTY 49 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeehhhhHHHHHHHHHHHHH
Confidence 77899999999999999887764
No 7
>2eje_A General transcription factor II-I; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=5.89 E-value=2.4e+02 Score=19.87 Aligned_cols=36 Identities=3% Similarity=0.059 Sum_probs=21.4
Q ss_pred CCCCCCCCccccccCCCCHHHHHHHHHHhhhhhHHH
Q 034082 15 SIAKEPEKPQIEAFRMPTMEEMRAQEVWNNCAVRSV 50 (104)
Q Consensus 15 ~~~~~~e~~~~~~~~~~t~ee~~~~~~mesC~~Ksv 50 (104)
+.+.+.++...-.+++-..=.+.+++..+-|..|++
T Consensus 3 ~~~~~~~~~~~s~~d~i~~LrkqVedLFn~kYgkAL 38 (114)
T 2eje_A 3 SGSSGDDNERLSKVEKARQLREQVNDLFSRKFGEAI 38 (114)
T ss_dssp CCCCCSSTTTCSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 344444444444444433344568999999998863
No 8
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=5.84 E-value=4.3e+02 Score=20.21 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=17.8
Q ss_pred CCCCccccccCCCCHHHHHHHHHHhhhhh
Q 034082 19 EPEKPQIEAFRMPTMEEMRAQEVWNNCAV 47 (104)
Q Consensus 19 ~~e~~~~~~~~~~t~ee~~~~~~mesC~~ 47 (104)
.+-+|.-+.++.||++|+......-.-..
T Consensus 151 AAl~P~~GLiR~PT~~E~iA~~t~K~iaL 179 (226)
T 4dox_A 151 AAMQPPSGLTRSPTQEERIANATNKQVHL 179 (226)
T ss_dssp TSCCCTTCCSSCCCHHHHHHHHTC-----
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 33444445789999999998877665544
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=5.37 E-value=5.4e+02 Score=14.84 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=15.7
Q ss_pred hhHHhhh-hHHHHHHHHHHHHHhhhC
Q 034082 79 PKAACAG-CAGFAAFSVLIEKFLDRH 103 (104)
Q Consensus 79 p~Aa~~G-cagFAAFS~aId~~m~~~ 103 (104)
.-+.++| -+.+++...++=+|+|++
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 3444454 455677777777888765
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=5.27 E-value=5.5e+02 Score=14.89 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=14.3
Q ss_pred HHhhh-hHHHHHHHHHHHHHhhhC
Q 034082 81 AACAG-CAGFAAFSVLIEKFLDRH 103 (104)
Q Consensus 81 Aa~~G-cagFAAFS~aId~~m~~~ 103 (104)
+.++| -+.+++...++=+|+|++
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeehHHHHHHHHHHHHHHHHhhhh
Confidence 34444 455667777777777764
Done!