Query 034084
Match_columns 104
No_of_seqs 110 out of 587
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 16:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034084.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034084hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e0q_A COP9 signalosome comple 100.0 7E-31 2.4E-35 183.1 8.4 83 21-104 4-91 (141)
2 4b4t_U RPN8, 26S proteasome re 99.9 4.3E-28 1.5E-32 188.5 9.1 83 22-104 5-92 (338)
3 2o95_A 26S proteasome non-ATPa 99.9 5.5E-26 1.9E-30 163.0 8.7 86 19-104 4-95 (187)
4 4b4t_V 26S proteasome regulato 99.9 8.6E-24 2.9E-28 162.7 9.1 87 18-104 20-107 (306)
5 2znr_A AMSH-like protease; met 98.9 2.3E-09 8E-14 76.6 6.0 81 19-104 5-87 (178)
6 3rzv_A STAM-binding protein; u 98.5 5.3E-07 1.8E-11 66.2 8.2 79 21-104 40-120 (211)
7 2kks_A Uncharacterized protein 98.5 1.2E-06 4.1E-11 60.0 9.2 77 25-104 2-79 (146)
8 2kcq_A MOV34/MPN/PAD-1 family; 98.3 6E-07 2E-11 62.0 4.5 76 26-104 2-81 (153)
9 1oi0_A AF2198, hypothetical pr 97.5 6.4E-05 2.2E-09 49.9 3.2 44 25-73 4-47 (124)
10 2p8r_A PRP8, PRE-mRNA-splicing 34.6 9.3 0.00032 28.7 0.3 50 25-77 40-94 (273)
11 3s6n_E Small nuclear ribonucle 32.2 50 0.0017 20.3 3.4 49 22-70 10-66 (92)
12 1qzm_A ATP-dependent protease 23.1 44 0.0015 20.9 1.9 22 23-44 29-50 (94)
No 1
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=99.97 E-value=7e-31 Score=183.07 Aligned_cols=83 Identities=24% Similarity=0.438 Sum_probs=75.4
Q ss_pred CceeEEEeehHHHHHHHHHhhh-----CCceeEEEEeeeEeCCEEEEEEEeecccccCcchhhcccHHHHHHHHHHHHhh
Q 034084 21 PLRVVQIEGLVMLKIIKHCKEF-----SPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREV 95 (104)
Q Consensus 21 ~~~~V~vhplVll~I~dh~~r~-----~~~~viG~LLG~~~~~~veVtnsF~vP~~~~~~~~~~~~~~y~~~m~~~~k~v 95 (104)
+..+|+|||||||||+|||+|. .+.+|+|+|||.++++++||+|||++|++++++++.++ .+|+++|++++|+|
T Consensus 4 ~~~~V~ihplvll~I~dH~~R~~~~~g~~~~V~G~LLG~~~~~~veV~nsF~~p~~~~~~~~~~d-~~y~~~m~~~~k~v 82 (141)
T 4e0q_A 4 MSVTISLHPLVIMNISEHWTRFRAQHGEPRQVYGALIGKQKGRNIEIMNSFELKTDVIGDETVIN-KDYYNKKEQQYKQV 82 (141)
T ss_dssp -CEEEEECHHHHHHHHHHHHCC------CCEEEEEEEEEEETTEEEEEEEEECCEEEETTEEEEC-HHHHHHHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHhhhcccCCCCcEEEEEEEEEEeCCEEEEEEEEEecccCCCCceeec-HHHHHHHHHHHHHh
Confidence 4567999999999999999985 35899999999999999999999999999877767665 99999999999999
Q ss_pred CCCCCcccC
Q 034084 96 NVDNNTVGW 104 (104)
Q Consensus 96 ~~~e~iVGW 104 (104)
||++++|||
T Consensus 83 ~~~e~iVGW 91 (141)
T 4e0q_A 83 FSDLDFIGW 91 (141)
T ss_dssp STTCEEEEE
T ss_pred CCCccEEEE
Confidence 999999999
No 2
>4b4t_U RPN8, 26S proteasome regulatory subunit RPN8; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.3e-28 Score=188.51 Aligned_cols=83 Identities=27% Similarity=0.442 Sum_probs=74.7
Q ss_pred ceeEEEeehHHHHHHHHHhhhC---CceeEEEEeeeEeCCEEEEEEEeecccccCcchh--hcccHHHHHHHHHHHHhhC
Q 034084 22 LRVVQIEGLVMLKIIKHCKEFS---PALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEI--EADGANYQLEMMRCLREVN 96 (104)
Q Consensus 22 ~~~V~vhplVll~I~dh~~r~~---~~~viG~LLG~~~~~~veVtnsF~vP~~~~~~~~--~~~~~~y~~~m~~~~k~v~ 96 (104)
-++|.|||||||+|+|||+|.. +.+|+|+|||.++|++|||+|||++|+++++++. .+.|.+|+++|+++||+||
T Consensus 5 ~~~V~vhPlVll~I~dH~~R~~~~~~~rViG~LLG~~~~~~veV~nsF~~p~~e~~~~~~~~~~D~~y~~~m~~~~kkV~ 84 (338)
T 4b4t_U 5 HEKVTIAPLVLLSALDHYERTQTKENKRCVGVILGDANSSTIRVTNSFALPFEEDEKNSDVWFLDHNYIENMNEMCKKIN 84 (338)
T ss_dssp CSEEEECHHHHHHHHHHHHHHTTTCCSCCEEEEEEEECSSEEEEEEEEECCEEECSSSTTCEEECHHHHHHHHHHHHHHC
T ss_pred CCEEEEecHHHHHHHHHHHHhhcCCCCeEEEEEEeEEcCCEEEEEEEEEeccccCCCCCccccccHHHHHHHHHHHhhcC
Confidence 3679999999999999999953 3799999999999999999999999998876543 3446999999999999999
Q ss_pred CCCCcccC
Q 034084 97 VDNNTVGW 104 (104)
Q Consensus 97 ~~e~iVGW 104 (104)
|++.+|||
T Consensus 85 ~~e~iVGW 92 (338)
T 4b4t_U 85 AKEKLIGW 92 (338)
T ss_dssp CSCEEEEE
T ss_pred ccCCEEEE
Confidence 99999999
No 3
>2o95_A 26S proteasome non-ATPase regulatory subunit 7; PSMD7, MOV34, JAB1/MPN, metal-free dimer, UN function; HET: SO4 12P ETE PG4 PGE; 1.95A {Homo sapiens} PDB: 2o96_A
Probab=99.93 E-value=5.5e-26 Score=163.02 Aligned_cols=86 Identities=29% Similarity=0.513 Sum_probs=77.0
Q ss_pred CCCceeEEEeehHHHHHHHHHhhh----CCceeEEEEeeeEeCCEEEEEEEeecccccCcch--hhcccHHHHHHHHHHH
Q 034084 19 APPLRVVQIEGLVMLKIIKHCKEF----SPALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEE--IEADGANYQLEMMRCL 92 (104)
Q Consensus 19 ~~~~~~V~vhplVll~I~dh~~r~----~~~~viG~LLG~~~~~~veVtnsF~vP~~~~~~~--~~~~~~~y~~~m~~~~ 92 (104)
..|+++|+|||+|++||+|||.|. .+.+|+|+|||...+++++|+|||++|+.+++.+ ....|.+|+++|++++
T Consensus 4 ~~~~~~V~i~plvllkI~~H~~r~~~~~~~~~V~G~LLG~~~~~~v~V~~~f~lp~~~~~~~~~~~~~d~ey~~~m~~~~ 83 (187)
T 2o95_A 4 ELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDEDDKDDSVWFLDHDYLENMYGMF 83 (187)
T ss_dssp CCSCSEEEECHHHHHHHHHHHHHHHHTTCCSCCEEEEEEEESSSEEEEEEEEEECEEECSSCTTSEEECHHHHHHHHHHH
T ss_pred CCCCCEEEEchHHHHHHHHHHhhhcccCCCcEEEEEEEEEEcCCEEEEEEEEEeCCcccCCCcchhhcCHHHHHHHHHHH
Confidence 456789999999999999999996 6899999999999999999999999999877653 2233589999999999
Q ss_pred HhhCCCCCcccC
Q 034084 93 REVNVDNNTVGW 104 (104)
Q Consensus 93 k~v~~~e~iVGW 104 (104)
|++++++.+|||
T Consensus 84 ~~v~~~~~iVGW 95 (187)
T 2o95_A 84 KKVNARERIVGW 95 (187)
T ss_dssp HTTSSSCEEEEE
T ss_pred HHhCCCCCEEEE
Confidence 999999999999
No 4
>4b4t_V 26S proteasome regulatory subunit RPN11; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=8.6e-24 Score=162.68 Aligned_cols=87 Identities=28% Similarity=0.425 Sum_probs=79.9
Q ss_pred CCCCceeEEEeehHHHHHHHHHhhhCCceeEEEEeeeE-eCCEEEEEEEeecccccCcchhhcccHHHHHHHHHHHHhhC
Q 034084 18 VAPPLRVVQIEGLVMLKIIKHCKEFSPALVTGQLLGLD-VGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVN 96 (104)
Q Consensus 18 ~~~~~~~V~vhplVll~I~dh~~r~~~~~viG~LLG~~-~~~~veVtnsF~vP~~~~~~~~~~~~~~y~~~m~~~~k~v~ 96 (104)
.+.++++|+|+|+|+|||++||.++.+.+|+|+|||.. ++++++|||||++|+.+++++++..+..|+.+|++++++++
T Consensus 20 ~~~~~~~V~is~lallkm~~Ha~~~~~~eV~GlLlG~~~~~~~v~Vt~~f~~P~~~~~~~v~~~d~~y~~~m~~~~~~v~ 99 (306)
T 4b4t_V 20 RDDTKETVYISSIALLKMLKHGRAGVPMEVMGLMLGEFVDDYTVNVVDVFAMPQSGTGVSVEAVDDVFQAKMMDMLKQTG 99 (306)
T ss_dssp CCSSCCEEEECHHHHHHHHHHTCSCSSSCCEEEEEEEEETTTEEEEEEEECCCCEESSSCEECCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEeHHHHHHHHHHhcCCCCceEEEEEeeEEcCCeEEEEEEEEeCCcCCCCCchhcCCHHHHHHHHHHHHHhC
Confidence 34568999999999999999999999999999999985 56699999999999999888887667999999999999999
Q ss_pred CCCCcccC
Q 034084 97 VDNNTVGW 104 (104)
Q Consensus 97 ~~e~iVGW 104 (104)
+++.+|||
T Consensus 100 ~~~~vVGW 107 (306)
T 4b4t_V 100 RDQMVVGW 107 (306)
T ss_dssp CCCCCSEE
T ss_pred CCcceeeE
Confidence 99999999
No 5
>2znr_A AMSH-like protease; metal binding protein, alternative splicing, hydrolase, metal-binding, metalloprotease, UBL conjugation pathway, zinc; 1.20A {Homo sapiens} PDB: 2znv_A
Probab=98.89 E-value=2.3e-09 Score=76.56 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=63.2
Q ss_pred CCCceeEEEeehHHHHHHHHHhhhCC--ceeEEEEeeeEeCCEEEEEEEeecccccCcchhhcccHHHHHHHHHHHHhhC
Q 034084 19 APPLRVVQIEGLVMLKIIKHCKEFSP--ALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVN 96 (104)
Q Consensus 19 ~~~~~~V~vhplVll~I~dh~~r~~~--~~viG~LLG~~~~~~veVtnsF~vP~~~~~~~~~~~~~~y~~~m~~~~k~v~ 96 (104)
..++..+.|...++.+|+.|+.++.+ .+++|.|+|...++..+|+++|++|...+.+.+...+.+- .++. ..+
T Consensus 5 ~~~~~~v~i~~~~l~k~l~hA~~~~~~~~EvcGlL~G~~~~~~~~V~~v~~~pq~~t~~~~~~~~~~e---~~~~--~~~ 79 (178)
T 2znr_A 5 MEGLRCVVLPEDLCHKFLQLAESNTVRGIETCGILCGKLTHNEFTITHVIVPKQSAGPDYCDMENVEE---LFNV--QDQ 79 (178)
T ss_dssp CCSCCCEEEETTHHHHHHHHHHHHHTTTCCCEEEEEEEEETTEEEEEEEEECCEEEETTEEEECCHHH---HHHH--HHH
T ss_pred cCCcEEEEECHHHHHHHHHHHHhCCCCCceEEEEEeeEecCCCeEEEEEEeCCcCCCCCeeccCCHHH---HHHH--HHh
Confidence 35678899999999999999999854 6999999999998899999999999876655554433221 1222 345
Q ss_pred CCCCcccC
Q 034084 97 VDNNTVGW 104 (104)
Q Consensus 97 ~~e~iVGW 104 (104)
.++.+|||
T Consensus 80 ~~l~~vGw 87 (178)
T 2znr_A 80 HDLLTLGW 87 (178)
T ss_dssp HTCEEEEE
T ss_pred CCCEEEEE
Confidence 68899999
No 6
>3rzv_A STAM-binding protein; ubiquitin hydrolase, endosome-associated deubiquitinat enzyme, hydrolase; 1.67A {Homo sapiens} PDB: 3rzu_A
Probab=98.48 E-value=5.3e-07 Score=66.18 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=60.5
Q ss_pred CceeEEEeehHHHHHHHHHhhhC--CceeEEEEeeeEeCCEEEEEEEeecccccCcchhhcccHHHHHHHHHHHHhhCCC
Q 034084 21 PLRVVQIEGLVMLKIIKHCKEFS--PALVTGQLLGLDVGSVLEVTNCFPFPIQEEDEEIEADGANYQLEMMRCLREVNVD 98 (104)
Q Consensus 21 ~~~~V~vhplVll~I~dh~~r~~--~~~viG~LLG~~~~~~veVtnsF~vP~~~~~~~~~~~~~~y~~~m~~~~k~v~~~ 98 (104)
.+..|.|..-++-+|+.|+..+. +.+++|.|+|...++.++|+++|..|...+++.++..+.+.+-+ ...+ .+
T Consensus 40 ~lr~v~Ipk~ll~kfL~~A~~~tp~~~EvcGlL~Gk~~~~~~~I~~v~~ppq~gt~~~v~~~~~~e~~~---~~~~--~~ 114 (211)
T 3rzv_A 40 GLRHVVVPGRLCPQFLQLASANTARGVATCGILCGKLMRNEFTITHVLIPKQSAGSDYCNTENEEELFL---IQDQ--QG 114 (211)
T ss_dssp TBCCEEEETTHHHHHHHHHHHHHHTTCCCEEEEEEEEETTEEEEEEEEECCEEECSSCEEECCHHHHHH---HHHH--HT
T ss_pred ccEEEEECHHHHHHHHHHHHhCCCCCceEEEEEEeEcCCCCEEEEEEEeCCccCCCCceeccChHHHHH---HHhh--CC
Confidence 35789999999999999999984 47999999999999999999999998877766555443321111 1111 58
Q ss_pred CCcccC
Q 034084 99 NNTVGW 104 (104)
Q Consensus 99 e~iVGW 104 (104)
+.+|||
T Consensus 115 l~~vGW 120 (211)
T 3rzv_A 115 LITLGW 120 (211)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 999999
No 7
>2kks_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; NMR {Desulfitobacterium hafniense}
Probab=98.47 E-value=1.2e-06 Score=59.99 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=58.9
Q ss_pred EEEeehHHHHHHHHHhhhCCceeEEEEeeeEeCCEEEEEEEeecccccCc-chhhcccHHHHHHHHHHHHhhCCCCCccc
Q 034084 25 VQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEED-EEIEADGANYQLEMMRCLREVNVDNNTVG 103 (104)
Q Consensus 25 V~vhplVll~I~dh~~r~~~~~viG~LLG~~~~~~veVtnsF~vP~~~~~-~~~~~~~~~y~~~m~~~~k~v~~~e~iVG 103 (104)
++|...++.+|++|+.+..|..+.|.|+|...++...|+..|++|..... +...++ .+.+.++.+..++ .++.+||
T Consensus 2 l~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~v~~~~p~~n~~~~~~~f~~d-p~~~~~~~~~~~~--~g~~ivG 78 (146)
T 2kks_A 2 ITLTKKQMEEMLAHARQALPNEACGLLGGRRDGDDRWVERVYPLNNLDQSPEHFSMD-PREQLTAVKDMRK--NGWVMLG 78 (146)
T ss_dssp EEEEHHHHHHHHHHHHHHTTSCEEEEEEEEEETTEEEEEEEECCCCCSCCSSSCCCC-HHHHHHHHHHHHH--HTCEEEE
T ss_pred EEECHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCcEEEEEEECCCcCCCCceEEEC-HHHHHHHHHHHHH--CCCEEEE
Confidence 67889999999999999999999999999998888999999999954432 344454 4444444444443 3467888
Q ss_pred C
Q 034084 104 W 104 (104)
Q Consensus 104 W 104 (104)
|
T Consensus 79 ~ 79 (146)
T 2kks_A 79 N 79 (146)
T ss_dssp E
T ss_pred E
Confidence 7
No 8
>2kcq_A MOV34/MPN/PAD-1 family; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Salinibacter ruber dsm 13855}
Probab=98.31 E-value=6e-07 Score=61.97 Aligned_cols=76 Identities=18% Similarity=0.133 Sum_probs=55.8
Q ss_pred EEeehHHHHHHHHHhhhCCceeEEEEeeeEe-CCEEEEEEEeecccc--cC-cchhhcccHHHHHHHHHHHHhhCCCCCc
Q 034084 26 QIEGLVMLKIIKHCKEFSPALVTGQLLGLDV-GSVLEVTNCFPFPIQ--EE-DEEIEADGANYQLEMMRCLREVNVDNNT 101 (104)
Q Consensus 26 ~vhplVll~I~dh~~r~~~~~viG~LLG~~~-~~~veVtnsF~vP~~--~~-~~~~~~~~~~y~~~m~~~~k~v~~~e~i 101 (104)
+|...++.+|+.|+.+..|..+.|.|+|... ++.+.|+..|++|.. ++ .....++..+| .++.+..++. ++.+
T Consensus 2 ~i~~~~l~~i~~ha~~~~p~E~cGlL~G~~~~~~~~~v~~~~p~~n~~~~~~~~~f~~dp~~~-~~~~~~~~~~--g~~i 78 (153)
T 2kcq_A 2 KTTPDILDQIRVHGADAYPEEGCGFLLGTVTDDGDNRVAALHRATNRRSEQRTRRYELTADDY-RAADAAAQEQ--GLDV 78 (153)
T ss_dssp BCCHHHHHHHHHHHHHHTTSCCCEEEEEEECTTSCEEEEEEEESSCCCCCCCSCCSSCCCCSH-HHHHHHHHHH--TCEE
T ss_pred EeCHHHHHHHHHHHHhcCCcceEEEEEEeeccCCCeEEEEEEECCCCCCCCCCcEEEECHHHH-HHHHHHHHHC--CCeE
Confidence 4667899999999999999999999999987 788999999999965 22 23344542333 3333444333 5789
Q ss_pred ccC
Q 034084 102 VGW 104 (104)
Q Consensus 102 VGW 104 (104)
|||
T Consensus 79 vG~ 81 (153)
T 2kcq_A 79 VGV 81 (153)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
No 9
>1oi0_A AF2198, hypothetical protein AF2198; proteasome, deubiquitination, archaea, hydrolase; 1.5A {Archaeoglobus fulgidus} SCOP: c.97.3.1 PDB: 1r5x_A
Probab=97.50 E-value=6.4e-05 Score=49.94 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=39.1
Q ss_pred EEEeehHHHHHHHHHhhhCCceeEEEEeeeEeCCEEEEEEEeecccccC
Q 034084 25 VQIEGLVMLKIIKHCKEFSPALVTGQLLGLDVGSVLEVTNCFPFPIQEE 73 (104)
Q Consensus 25 V~vhplVll~I~dh~~r~~~~~viG~LLG~~~~~~veVtnsF~vP~~~~ 73 (104)
++|...++.+|++|+++..|.++.|.|+|... .|++.|++| +..
T Consensus 4 v~i~~~~l~~i~~ha~~~~P~E~cGlL~g~~~----~v~~~~~~p-~~~ 47 (124)
T 1oi0_A 4 MKISRGLLKTILEAAKSAHPDEFIALLSGSKD----VMDELIFLP-FVS 47 (124)
T ss_dssp CEECHHHHHHHHHHHHHHTTSCCEEEEEESTT----EECEEEECC-CCC
T ss_pred EEEcHHHHHHHHHHHHhcCCCeeEEEEecccC----EEEEEEECC-CCC
Confidence 67888999999999999999999999999863 789999999 543
No 10
>2p8r_A PRP8, PRE-mRNA-splicing factor PRP8; alpha-beta, translation; 2.10A {Caenorhabditis elegans} PDB: 2p87_A
Probab=34.57 E-value=9.3 Score=28.72 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=31.4
Q ss_pred EEEeehHHHHHHHHHhhhCC--ceeEEEEeeeE---eCCEEEEEEEeecccccCcchh
Q 034084 25 VQIEGLVMLKIIKHCKEFSP--ALVTGQLLGLD---VGSVLEVTNCFPFPIQEEDEEI 77 (104)
Q Consensus 25 V~vhplVll~I~dh~~r~~~--~~viG~LLG~~---~~~~veVtnsF~vP~~~~~~~~ 77 (104)
..|=|.-| ++-+-.... .++-|.|.|.. ..+..||+..--+|...+.+.+
T Consensus 40 t~vlPknl---lkkFi~IADlrTq~~G~LyG~s~~d~~~vkeI~~ivipPQ~gt~~sv 94 (273)
T 2p8r_A 40 TYILPKNI---LKKFITISDLRTQIAGFMYGVSPPDNPQVKEIRCIVLVPQTGSHQQV 94 (273)
T ss_dssp EEEEEHHH---HHHHHHTSCSSSCCEEEEEEECCTTCTTEEEEEEEECCSBEECSSCE
T ss_pred EEEecHHH---HHHHHHHhhccceEEEEEeccCCCCCCCeEEEEEEEECCccCCCceE
Confidence 45555543 444444332 67999999995 3468889877777765544433
No 11
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=32.24 E-value=50 Score=20.34 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=30.5
Q ss_pred ceeEEEeehHHHH-HHHHHhh-------hCCceeEEEEeeeEeCCEEEEEEEeeccc
Q 034084 22 LRVVQIEGLVMLK-IIKHCKE-------FSPALVTGQLLGLDVGSVLEVTNCFPFPI 70 (104)
Q Consensus 22 ~~~V~vhplVll~-I~dh~~r-------~~~~~viG~LLG~~~~~~veVtnsF~vP~ 70 (104)
.+++-+.|+-+|. .+++-.+ .....+.|.|.|++.--.+-..||...-.
T Consensus 10 ~~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~ 66 (92)
T 3s6n_E 10 VQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS 66 (92)
T ss_dssp ----CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECS
T ss_pred cceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEec
Confidence 4567778876553 3332222 22368999999998777888888887753
No 12
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=23.09 E-value=44 Score=20.88 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=19.2
Q ss_pred eeEEEeehHHHHHHHHHhhhCC
Q 034084 23 RVVQIEGLVMLKIIKHCKEFSP 44 (104)
Q Consensus 23 ~~V~vhplVll~I~dh~~r~~~ 44 (104)
..+.+..-++..|+++|+|...
T Consensus 29 ~~~~i~d~al~~iI~~YTREaG 50 (94)
T 1qzm_A 29 GELTVDDSAIIGIIRYYTREAG 50 (94)
T ss_dssp TTEEECHHHHHHHHHHHCCCSS
T ss_pred hhceECHHHHHHHHHHhccccc
Confidence 3599999999999999999753
Done!