BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034085
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P83877|TXN4A_MOUSE Thioredoxin-like protein 4A OS=Mus musculus GN=Txnl4a PE=2 SV=1
Length = 142
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 89/104 (85%), Positives = 99/104 (95%)
Query: 1 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 60
M+MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGN
Sbjct: 39 MKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGN 98
Query: 61 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 104
NNKINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct: 99 NNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
>sp|P83876|TXN4A_HUMAN Thioredoxin-like protein 4A OS=Homo sapiens GN=TXNL4A PE=1 SV=1
Length = 142
Score = 196 bits (497), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 89/104 (85%), Positives = 99/104 (95%)
Query: 1 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 60
M+MDEVL S+AE +KNFAVIYLVDI+EVPDFN MYELYDP TVMFFFRNKHIMIDLGTGN
Sbjct: 39 MKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGN 98
Query: 61 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 104
NNKINWA++DKQE +DI+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct: 99 NNKINWAMEDKQEMVDIIETVYRGARKGRGLVVSPKDYSTKYRY 142
>sp|P87215|DIMI_SCHPO Mitosis protein dim1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dim1 PE=1 SV=1
Length = 142
Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 77/104 (74%), Positives = 93/104 (89%)
Query: 1 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 60
++ DEVL +AE + N AVIYLVDI EVPDFN MYELYD +T+MFF+RNKH+MIDLGTGN
Sbjct: 39 IKQDEVLYRIAEKVVNMAVIYLVDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGN 98
Query: 61 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 104
NNKINW L+DKQE IDI+ET++RGARKG+GLVI+PKDYST++RY
Sbjct: 99 NNKINWPLEDKQEMIDIIETIFRGARKGKGLVISPKDYSTRHRY 142
>sp|Q553S5|TXN4A_DICDI Thioredoxin-like protein 4A homolog OS=Dictyostelium discoideum
GN=txnl4a PE=3 SV=4
Length = 160
Score = 163 bits (413), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 92/104 (88%)
Query: 1 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 60
M+ D++L+S+AE +KN AVIY+VDI+EVPD N+MYELYD MFF+RNKHIM+DLGTGN
Sbjct: 30 MKQDDILASIAEKVKNMAVIYVVDITEVPDLNSMYELYDDCPTMFFYRNKHIMVDLGTGN 89
Query: 61 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTKYRY 104
NNKINWAL +KQ+ IDI+ETVY+GARKG+GLV +P+D+S +Y++
Sbjct: 90 NNKINWALTNKQDMIDIIETVYKGARKGKGLVNSPRDFSPQYKF 133
>sp|Q06819|DIB1_YEAST Spliceosomal protein DIB1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=DIB1 PE=1 SV=1
Length = 143
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 84/101 (83%)
Query: 1 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 60
M MDE+LSS+AE ++NFAVIYL DI EV DF+ MYEL DP TVMFF+ NKH+M D GTGN
Sbjct: 40 MIMDELLSSIAERVRNFAVIYLCDIDEVSDFDEMYELTDPMTVMFFYHNKHMMCDFGTGN 99
Query: 61 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 101
NNK+N+ + DKQE IDI+ET++RGARK +GLV++P DY+ K
Sbjct: 100 NNKLNFIVDDKQEMIDILETIFRGARKNKGLVVSPYDYNHK 140
>sp|Q75BD8|DIB1_ASHGO Spliceosomal protein DIB1 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DIB1 PE=3 SV=1
Length = 143
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 82/101 (81%)
Query: 1 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 60
M MDE+L S+AE + NFA IY+ D +EVPDFN MYEL DP TVMFF++NKH+ D GTGN
Sbjct: 40 MLMDEILYSIAEKVVNFAAIYVCDTTEVPDFNEMYELQDPMTVMFFYKNKHMRCDFGTGN 99
Query: 61 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 101
NNK+N+ + +KQE IDI+ETV+RGAR+ +GLV++P DY+ K
Sbjct: 100 NNKMNFVVDNKQEMIDIIETVFRGARRNKGLVVSPYDYNYK 140
>sp|Q6FMI2|DIB1_CANGA Spliceosomal protein DIB1 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DIB1 PE=3
SV=1
Length = 142
Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/101 (62%), Positives = 81/101 (80%)
Query: 1 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGN 60
M MDE+L+SVAE ++NF IYL DI EVPDFN MYEL D +MFF++NKH+M D GTGN
Sbjct: 38 MLMDEMLASVAEKVRNFVAIYLCDIDEVPDFNDMYELNDNMCLMFFYKNKHMMCDFGTGN 97
Query: 61 NNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 101
NNK+N+ DKQE IDI+ET++RGARK +G+V++P DY+ K
Sbjct: 98 NNKMNFLPDDKQELIDIMETIFRGARKNKGIVVSPYDYNHK 138
>sp|Q9NX01|TXN4B_HUMAN Thioredoxin-like protein 4B OS=Homo sapiens GN=TXNL4B PE=1 SV=1
Length = 149
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Query: 1 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTG 59
+Q+D++LS + + A IYLVD+ + + +++ Y PSTV FFF +H+ +D G+
Sbjct: 39 LQLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTV-FFFNGQHMKVDYGSP 97
Query: 60 NNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 97
++ K + K KQ+FID++E +YRGA +G+ +V +P D
Sbjct: 98 DHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
>sp|Q8BUH1|TXN4B_MOUSE Thioredoxin-like protein 4B OS=Mus musculus GN=Txnl4b PE=2 SV=1
Length = 149
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 1 MQMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL-YDPSTVMFFFRNKHIMIDLGTG 59
+Q+D++LS + + A IYL D+ P + +++ Y PSTV FFF +H+ D G+
Sbjct: 39 LQLDDILSKTSADLSKMAAIYLGDVDHTPVYTQYFDISYIPSTV-FFFNGQHMKGDYGSP 97
Query: 60 NNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKD 97
++ K + K KQ+FID++E +YRGA +G+ +V +P D
Sbjct: 98 DHTKFVGSFKTKQDFIDLIEVIYRGAMRGKLIVQSPID 135
>sp|Q9PR63|GYRA_UREPA DNA gyrase subunit A OS=Ureaplasma parvum serovar 3 (strain ATCC
700970) GN=gyrA PE=3 SV=1
Length = 840
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 7 LSSVAETIKNFAVIYLVDISEV------PDFNTMYELYDPSTVMFFF---------RNKH 51
L+ V + IK +A + V ISE+ PDF T E+Y S ++ +F R+K+
Sbjct: 204 LTEVCQAIKAYAKNHNVTISEIMEYLKGPDFPTGAEIYGDSGIIKYFNTGRGSVTIRSKY 263
Query: 52 IMIDLGTG 59
+ D+G G
Sbjct: 264 EIEDIGQG 271
>sp|Q73TS2|PCKG_MYCPA Phosphoenolpyruvate carboxykinase [GTP] OS=Mycobacterium
paratuberculosis (strain ATCC BAA-968 / K-10) GN=pckG
PE=3 SV=1
Length = 609
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 32 NTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 91
N+ L DPS V +I + +G NW D E I+ +YRG +GR +
Sbjct: 68 NSYLALSDPSDVARVESRTYICTEEESGAGPTNNWM--DPTEMRSIMTDLYRGCMRGRTM 125
Query: 92 VIAP 95
+ P
Sbjct: 126 WVVP 129
>sp|P02567|MYO1_CAEEL Myosin-1 OS=Caenorhabditis elegans GN=let-75 PE=2 SV=3
Length = 1938
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 57 GTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPKDYSTK 101
GT N +NW K+K D V +V + ++K LV +DY+T+
Sbjct: 584 GTVRYNVLNWLEKNKDPLNDTVVSVMKASKKNDLLVEIWQDYTTQ 628
>sp|Q54DP7|MYBR_DICDI Myb-like protein R OS=Dictyostelium discoideum GN=mybR PE=4 SV=2
Length = 394
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 28 VPDFNTMYELYDPSTVMF----FFRNKHIMIDLGT-GNNNKINWALKDKQEFIDIVETVY 82
V +F + E+ PS V+ K +M+++ T GN ++INW KQ F+ + +
Sbjct: 307 VKNFKSTQEIIKPSPVISGNWSLDEQKALMVEVSTLGNKSEINWFFISKQLFL---KGIS 363
Query: 83 RGARKGR 89
R AR+ +
Sbjct: 364 RNARECQ 370
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,643,182
Number of Sequences: 539616
Number of extensions: 1570368
Number of successful extensions: 3199
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 3187
Number of HSP's gapped (non-prelim): 17
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)