Query 034085
Match_columns 104
No_of_seqs 107 out of 129
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034085.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034085hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2av4_A Thioredoxin-like protei 100.0 1E-38 3.5E-43 237.4 9.4 103 2-104 58-160 (160)
2 1qgv_A Spliceosomal protein U5 99.9 2.5E-22 8.7E-27 138.1 9.4 102 3-104 41-142 (142)
3 3gix_A Thioredoxin-like protei 99.8 5.3E-21 1.8E-25 132.4 10.1 103 2-104 40-142 (149)
4 3m9j_A Thioredoxin; oxidoreduc 96.2 0.019 6.4E-07 34.8 6.2 67 2-80 37-103 (105)
5 3zzx_A Thioredoxin; oxidoreduc 95.9 0.029 9.8E-07 36.3 6.7 66 3-80 38-103 (105)
6 3tco_A Thioredoxin (TRXA-1); d 95.7 0.056 1.9E-06 32.6 6.9 69 3-81 39-107 (109)
7 3qfa_C Thioredoxin; protein-pr 95.6 0.035 1.2E-06 35.3 5.9 66 3-80 49-114 (116)
8 4euy_A Uncharacterized protein 95.6 0.051 1.7E-06 33.5 6.4 69 3-82 36-104 (105)
9 3gnj_A Thioredoxin domain prot 95.4 0.094 3.2E-06 31.9 7.1 70 2-81 39-108 (111)
10 2e0q_A Thioredoxin; electron t 94.9 0.16 5.3E-06 30.1 7.0 68 3-81 34-101 (104)
11 3f3q_A Thioredoxin-1; His TAG, 94.9 0.11 3.7E-06 32.5 6.5 66 3-80 42-107 (109)
12 2trx_A Thioredoxin; electron t 94.7 0.28 9.5E-06 29.7 7.9 69 3-81 38-106 (108)
13 2vlu_A Thioredoxin, thioredoxi 94.7 0.11 3.7E-06 32.5 6.2 67 3-81 52-118 (122)
14 2j23_A Thioredoxin; immune pro 94.5 0.095 3.2E-06 33.4 5.6 68 3-81 51-119 (121)
15 3hz4_A Thioredoxin; NYSGXRC, P 94.5 0.13 4.4E-06 33.7 6.4 76 2-87 41-116 (140)
16 1xwb_A Thioredoxin; dimerizati 94.5 0.24 8.2E-06 29.7 7.1 67 3-80 38-104 (106)
17 1ep7_A Thioredoxin CH1, H-type 94.4 0.2 6.8E-06 30.5 6.7 68 3-81 42-109 (112)
18 2i4a_A Thioredoxin; acidophIle 94.2 0.35 1.2E-05 29.0 7.5 68 3-80 38-105 (107)
19 3die_A Thioredoxin, TRX; elect 94.1 0.28 9.6E-06 29.4 6.9 67 3-79 37-103 (106)
20 1syr_A Thioredoxin; SGPP, stru 94.0 0.16 5.6E-06 31.5 5.8 66 3-80 44-109 (112)
21 2yzu_A Thioredoxin; redox prot 93.9 0.34 1.1E-05 28.9 6.9 69 3-81 36-104 (109)
22 1r26_A Thioredoxin; redox-acti 93.9 0.26 9.1E-06 32.0 6.8 67 3-81 55-121 (125)
23 1v98_A Thioredoxin; oxidoreduc 93.7 0.45 1.5E-05 30.7 7.7 70 3-82 68-137 (140)
24 1fb6_A Thioredoxin M; electron 93.6 0.42 1.4E-05 28.5 6.9 68 3-80 36-103 (105)
25 1thx_A Thioredoxin, thioredoxi 93.5 0.51 1.7E-05 28.6 7.3 69 3-81 43-111 (115)
26 2oe3_A Thioredoxin-3; electron 93.5 0.28 9.6E-06 31.1 6.3 65 3-79 48-112 (114)
27 3p2a_A Thioredoxin 2, putative 93.3 0.43 1.5E-05 31.1 7.2 72 2-83 72-143 (148)
28 1t00_A Thioredoxin, TRX; redox 93.2 0.43 1.5E-05 29.1 6.7 69 3-81 41-109 (112)
29 1dby_A Chloroplast thioredoxin 93.1 0.49 1.7E-05 28.5 6.7 69 3-81 37-105 (107)
30 2o8v_B Thioredoxin 1; disulfid 93.0 1.1 3.6E-05 29.0 8.7 69 3-81 58-126 (128)
31 3hxs_A Thioredoxin, TRXP; elec 92.9 0.34 1.2E-05 31.0 6.1 69 3-81 69-137 (141)
32 3aps_A DNAJ homolog subfamily 92.9 0.42 1.4E-05 29.7 6.3 75 3-86 39-116 (122)
33 1ti3_A Thioredoxin H, PTTRXH1; 92.8 0.61 2.1E-05 28.2 7.0 68 3-82 44-111 (113)
34 2vim_A Thioredoxin, TRX; thior 92.6 0.25 8.7E-06 29.4 4.9 66 3-80 37-102 (104)
35 1gh2_A Thioredoxin-like protei 92.3 0.28 9.6E-06 29.9 4.9 46 3-49 39-84 (107)
36 3d22_A TRXH4, thioredoxin H-ty 92.2 0.58 2E-05 29.9 6.5 70 3-84 64-133 (139)
37 3uvt_A Thioredoxin domain-cont 92.2 0.65 2.2E-05 27.9 6.4 67 3-79 39-108 (111)
38 1w4v_A Thioredoxin, mitochondr 92.1 0.88 3E-05 28.6 7.2 69 3-81 49-117 (119)
39 2dj1_A Protein disulfide-isome 92.1 0.86 2.9E-05 28.9 7.2 73 2-85 51-126 (140)
40 2dj0_A Thioredoxin-related tra 92.0 0.5 1.7E-05 30.5 6.1 74 2-75 43-123 (137)
41 3ul3_B Thioredoxin, thioredoxi 91.5 0.54 1.9E-05 29.9 5.7 49 2-50 59-107 (128)
42 2ppt_A Thioredoxin-2; thiredox 91.3 1.1 3.8E-05 30.1 7.4 69 3-81 82-150 (155)
43 2dml_A Protein disulfide-isome 91.2 0.26 8.9E-06 31.0 3.9 72 2-82 52-123 (130)
44 2l57_A Uncharacterized protein 90.3 1.1 3.6E-05 28.2 6.2 77 3-88 44-122 (126)
45 1mek_A Protein disulfide isome 90.1 0.58 2E-05 28.3 4.7 72 2-81 41-115 (120)
46 1fo5_A Thioredoxin; disulfide 90.0 1.7 5.8E-05 24.9 6.7 65 2-80 19-83 (85)
47 2i1u_A Thioredoxin, TRX, MPT46 89.9 0.78 2.7E-05 28.2 5.2 48 3-50 48-95 (121)
48 3h79_A Thioredoxin-like protei 89.7 1.1 3.8E-05 28.3 6.0 69 3-79 51-124 (127)
49 3dxb_A Thioredoxin N-terminall 89.6 3.5 0.00012 28.9 9.2 74 2-85 47-120 (222)
50 1nsw_A Thioredoxin, TRX; therm 89.6 0.84 2.9E-05 27.3 5.1 44 3-46 35-78 (105)
51 2qsi_A Putative hydrogenase ex 89.3 0.38 1.3E-05 34.0 3.8 70 3-82 53-122 (137)
52 3fk8_A Disulphide isomerase; A 89.3 1.2 4E-05 28.2 5.9 76 3-81 47-131 (133)
53 1x5d_A Protein disulfide-isome 89.2 1.3 4.4E-05 27.7 5.9 73 2-84 42-118 (133)
54 1nho_A Probable thioredoxin; b 89.0 2.1 7.1E-05 24.5 7.1 65 3-81 19-83 (85)
55 2dj3_A Protein disulfide-isome 88.8 2.1 7E-05 26.9 6.7 76 3-85 43-120 (133)
56 1xfl_A Thioredoxin H1; AT3G510 88.8 2.4 8.3E-05 27.0 7.2 67 3-81 56-122 (124)
57 2voc_A Thioredoxin; electron t 88.6 1.5 5.3E-05 27.0 6.0 68 3-80 35-102 (112)
58 2vm1_A Thioredoxin, thioredoxi 88.5 0.98 3.4E-05 27.5 4.9 71 3-85 46-116 (118)
59 1x5e_A Thioredoxin domain cont 87.9 2.9 0.0001 26.0 7.0 67 3-80 40-107 (126)
60 2djk_A PDI, protein disulfide- 87.7 1.8 6.1E-05 28.2 6.1 74 3-85 40-117 (133)
61 1faa_A Thioredoxin F; electron 87.6 2.7 9.3E-05 26.0 6.7 66 3-80 55-121 (124)
62 2xc2_A Thioredoxinn; oxidoredu 87.5 2.4 8.1E-05 26.2 6.3 65 3-80 51-115 (117)
63 2f51_A Thioredoxin; electron t 87.5 1.1 3.9E-05 28.3 4.9 43 3-46 41-83 (118)
64 2qgv_A Hydrogenase-1 operon pr 87.4 0.72 2.5E-05 32.6 4.3 70 3-82 54-124 (140)
65 3ga4_A Dolichyl-diphosphooligo 86.7 0.81 2.8E-05 33.3 4.3 47 3-49 62-113 (178)
66 3dml_A Putative uncharacterize 86.6 1.1 3.7E-05 30.6 4.7 61 18-88 53-115 (116)
67 3d6i_A Monothiol glutaredoxin- 86.5 1.5 5.2E-05 26.7 5.0 68 3-82 39-108 (112)
68 2l5l_A Thioredoxin; structural 86.5 3.3 0.00011 26.5 6.8 70 3-82 56-125 (136)
69 3apq_A DNAJ homolog subfamily 86.4 2 7E-05 29.7 6.1 70 3-82 132-201 (210)
70 3evi_A Phosducin-like protein 86.3 1.2 4.1E-05 29.5 4.7 48 2-53 40-87 (118)
71 3qou_A Protein YBBN; thioredox 85.5 2.2 7.7E-05 30.5 6.1 49 2-50 43-91 (287)
72 3idv_A Protein disulfide-isome 85.1 1.4 4.8E-05 30.3 4.7 68 3-81 165-235 (241)
73 3cxg_A Putative thioredoxin; m 84.9 2 7E-05 27.8 5.2 69 3-82 58-128 (133)
74 1oaz_A Thioredoxin 1; immune s 84.9 2.4 8.3E-05 27.1 5.5 68 2-79 52-119 (123)
75 1wmj_A Thioredoxin H-type; str 84.4 0.7 2.4E-05 28.8 2.7 72 2-85 53-124 (130)
76 2wz9_A Glutaredoxin-3; protein 81.9 2.7 9.1E-05 27.7 4.9 72 3-86 50-121 (153)
77 2pu9_C TRX-F, thioredoxin F-ty 81.3 2.7 9.3E-05 25.5 4.5 67 3-81 42-109 (111)
78 2ywm_A Glutaredoxin-like prote 80.6 9.7 0.00033 26.2 7.6 68 6-83 46-115 (229)
79 3emx_A Thioredoxin; structural 80.4 2.2 7.7E-05 27.5 4.1 73 3-87 49-130 (135)
80 2l6c_A Thioredoxin; oxidoreduc 79.3 2.5 8.5E-05 26.1 3.8 68 3-81 37-104 (110)
81 1a8l_A Protein disulfide oxido 77.4 12 0.00041 25.5 7.3 69 3-81 152-224 (226)
82 3idv_A Protein disulfide-isome 76.5 3.3 0.00011 28.4 4.1 71 3-84 50-123 (241)
83 1a8l_A Protein disulfide oxido 74.2 9.8 0.00033 25.9 6.1 71 3-83 41-113 (226)
84 2dbc_A PDCL2, unnamed protein 73.4 6.3 0.00021 25.5 4.7 72 2-80 47-118 (135)
85 1sji_A Calsequestrin 2, calseq 73.3 7.1 0.00024 29.2 5.6 46 5-50 54-100 (350)
86 2es7_A Q8ZP25_salty, putative 73.1 1.3 4.6E-05 30.0 1.4 69 3-82 54-124 (142)
87 2yj7_A LPBCA thioredoxin; oxid 75.4 0.72 2.4E-05 27.2 0.0 44 3-46 37-80 (106)
88 1wou_A Thioredoxin -related pr 72.2 3.5 0.00012 26.1 3.2 46 3-49 49-101 (123)
89 2djj_A PDI, protein disulfide- 72.1 11 0.00038 22.9 5.5 67 3-80 43-114 (121)
90 1sen_A Thioredoxin-like protei 72.1 1.5 5E-05 29.8 1.4 81 5-85 66-150 (164)
91 2qc7_A ERP31, ERP28, endoplasm 69.6 5.8 0.0002 29.6 4.3 47 4-50 39-94 (240)
92 3q6o_A Sulfhydryl oxidase 1; p 69.5 8.2 0.00028 27.2 4.9 45 3-47 48-97 (244)
93 3us3_A Calsequestrin-1; calciu 68.8 8 0.00027 29.5 5.1 46 6-51 57-103 (367)
94 3f9u_A Putative exported cytoc 68.5 12 0.00041 24.6 5.3 27 63-89 146-172 (172)
95 2hls_A Protein disulfide oxido 66.7 12 0.0004 27.0 5.4 68 3-83 45-117 (243)
96 2zci_A Phosphoenolpyruvate car 64.6 4.5 0.00016 35.5 3.2 37 54-96 95-131 (610)
97 2c0g_A ERP29 homolog, windbeut 64.2 7.8 0.00027 29.1 4.1 69 4-81 50-130 (248)
98 2r2j_A Thioredoxin domain-cont 63.5 12 0.0004 28.5 5.1 50 3-52 40-95 (382)
99 1a0r_P Phosducin, MEKA, PP33; 60.8 9 0.00031 28.7 3.9 46 3-50 151-196 (245)
100 2b5e_A Protein disulfide-isome 59.5 9.9 0.00034 29.8 4.1 48 3-50 49-97 (504)
101 3f8u_A Protein disulfide-isome 59.4 11 0.00038 29.1 4.3 48 3-51 39-86 (481)
102 3ed3_A Protein disulfide-isome 58.9 11 0.00038 28.2 4.1 48 3-50 53-102 (298)
103 3ph9_A Anterior gradient prote 58.8 6.8 0.00023 27.0 2.8 65 21-85 81-147 (151)
104 2fgx_A Putative thioredoxin; N 58.7 4.1 0.00014 27.2 1.5 46 4-52 47-92 (107)
105 3apo_A DNAJ homolog subfamily 56.1 11 0.00038 31.3 4.0 49 3-52 151-199 (780)
106 3mjd_A Orotate phosphoribosylt 54.6 4.3 0.00015 30.6 1.2 23 53-80 10-32 (232)
107 1zma_A Bacterocin transport ac 54.3 32 0.0011 20.9 5.1 45 4-51 48-98 (118)
108 2kuc_A Putative disulphide-iso 54.0 35 0.0012 20.9 5.6 64 8-82 53-120 (130)
109 3qcp_A QSOX from trypanosoma b 53.6 33 0.0011 28.5 6.5 79 3-81 60-150 (470)
110 2fwh_A Thiol:disulfide interch 50.2 9.4 0.00032 24.3 2.2 64 8-80 57-125 (134)
111 2faf_A Phosphoenolpyruvate car 48.4 10 0.00035 33.3 2.7 28 69-96 104-131 (608)
112 2lst_A Thioredoxin; structural 53.3 3.9 0.00013 25.5 0.0 73 8-88 45-121 (130)
113 3ira_A Conserved protein; meth 46.3 39 0.0013 23.9 5.1 38 9-46 66-111 (173)
114 3apo_A DNAJ homolog subfamily 44.9 58 0.002 26.9 6.6 72 4-84 694-768 (780)
115 3t58_A Sulfhydryl oxidase 1; o 44.7 34 0.0012 28.1 5.2 71 3-83 48-127 (519)
116 2ywm_A Glutaredoxin-like prote 44.7 52 0.0018 22.4 5.4 69 4-86 155-223 (229)
117 2lrn_A Thiol:disulfide interch 42.7 61 0.0021 20.4 7.8 71 6-88 50-146 (152)
118 3moe_A Phosphoenolpyruvate car 40.9 10 0.00035 33.4 1.6 27 70-96 120-146 (624)
119 3f8u_A Protein disulfide-isome 40.4 82 0.0028 24.2 6.5 70 3-81 388-459 (481)
120 1gxg_A Colicin E8 immunity pro 38.5 16 0.00056 24.1 1.9 17 69-85 10-26 (85)
121 1fr2_A Colicin E9 immunity pro 38.1 16 0.00055 24.2 1.9 17 69-85 10-26 (86)
122 2hls_A Protein disulfide oxido 35.5 1.2E+02 0.0041 21.6 7.7 72 5-90 158-233 (243)
123 1ego_A Glutaredoxin; electron 35.3 25 0.00085 20.1 2.2 60 4-82 18-83 (85)
124 1unk_A Colicin E7; immunity pr 35.2 19 0.00064 24.2 1.8 17 69-85 10-26 (87)
125 2wvq_A Small S protein; prion- 34.1 26 0.00088 26.1 2.7 24 58-81 144-167 (225)
126 2dlx_A UBX domain-containing p 33.8 1.1E+02 0.0039 20.9 7.1 66 9-85 69-138 (153)
127 2ju5_A Thioredoxin disulfide i 33.2 99 0.0034 20.0 6.3 65 8-82 74-151 (154)
128 3uem_A Protein disulfide-isome 32.4 1E+02 0.0034 22.6 5.6 72 5-85 155-232 (361)
129 3u5i_q A0, L10E, 60S acidic ri 31.4 34 0.0012 27.0 3.1 75 5-81 10-103 (312)
130 3u43_A Colicin-E2 immunity pro 29.9 26 0.00088 23.7 1.9 17 69-85 10-26 (94)
131 2trc_P Phosducin, MEKA, PP33; 29.8 56 0.0019 23.3 3.8 47 3-52 138-184 (217)
132 2k0d_X IMME7, colicin-E7 immun 28.5 27 0.00091 24.2 1.8 18 68-85 16-33 (101)
133 1ilo_A Conserved hypothetical 27.1 84 0.0029 17.2 3.7 45 3-52 17-61 (77)
134 1ttz_A Conserved hypothetical 25.7 70 0.0024 19.8 3.3 46 20-80 29-74 (87)
135 2b5e_A Protein disulfide-isome 24.6 1.1E+02 0.0037 23.8 4.8 69 3-81 394-465 (504)
136 3kp8_A Vkorc1/thioredoxin doma 24.3 42 0.0014 21.1 2.0 36 3-44 30-71 (106)
137 3uem_A Protein disulfide-isome 24.0 2.1E+02 0.0072 20.8 6.5 42 3-46 285-328 (361)
138 3i7t_A RV2704, putative unchar 24.0 17 0.00059 25.5 0.1 35 3-37 52-88 (149)
139 1qu9_A YJGF protein; structura 23.3 18 0.00062 24.0 0.1 34 4-37 58-93 (128)
140 3o5y_A Sensor protein; GAF dom 23.3 74 0.0025 21.4 3.3 26 1-26 4-34 (165)
141 3k12_A Uncharacterized protein 22.9 20 0.00069 23.9 0.3 35 3-37 46-82 (122)
142 2zmf_A CAMP and CAMP-inhibited 21.8 78 0.0027 19.8 2.9 26 2-27 28-58 (189)
143 1v5r_A Growth-arrest-specific 21.6 56 0.0019 22.4 2.3 49 3-59 10-63 (97)
144 2guk_A Hypothetical protein PG 21.4 71 0.0024 22.7 2.9 21 60-81 61-81 (120)
145 2gpr_A Glucose-permease IIA co 21.2 42 0.0014 23.9 1.7 18 80-97 27-44 (154)
146 3gtz_A Putative translation in 20.9 22 0.00075 23.8 0.1 34 4-37 49-84 (124)
147 3hcz_A Possible thiol-disulfid 20.5 1.5E+02 0.0052 17.9 8.0 27 4-30 50-77 (148)
148 1z6n_A Hypothetical protein PA 20.2 72 0.0025 21.9 2.7 43 5-49 74-119 (167)
No 1
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=100.00 E-value=1e-38 Score=237.38 Aligned_cols=103 Identities=81% Similarity=1.362 Sum_probs=95.7
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+|+.+|.++|++.++.+.||.||++|+|++.++|++.+++|+|||++++|++||+|||||||++|++++||+|+++||.+
T Consensus 58 ~m~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fFk~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~ 137 (160)
T 2av4_A 58 KMDELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFFYRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETI 137 (160)
T ss_dssp HHHHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEEETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCceeEEccCCccccccC
Q 034085 82 YRGARKGRGLVIAPKDYSTKYRY 104 (104)
Q Consensus 82 yrgA~kGkglV~sP~dy~~~~~~ 104 (104)
||||+||||||+||+||||+|||
T Consensus 138 ~r~a~~g~~~v~~p~~~~~~~~~ 160 (160)
T 2av4_A 138 FRGARKGRGLVISPKDYSTKYKY 160 (160)
T ss_dssp HHHHHTTCSEEECSSCC------
T ss_pred HHHhhcCCeEEECCCccchhccC
Confidence 99999999999999999999987
No 2
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=99.87 E-value=2.5e-22 Score=138.08 Aligned_cols=102 Identities=86% Similarity=1.407 Sum_probs=84.8
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
+...|.+++++.+.-..++.||+++-|++.+-|.+.-.+|++||-+++.+..++|+|++++++|+++++++|+++|+.++
T Consensus 41 ~~p~l~~l~~~~~~~v~~~~vd~d~~~~~~~~~~i~~~Pt~~~~~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~ 120 (142)
T 1qgv_A 41 MDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVY 120 (142)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEETTTCCTTTTSSCSCSSCEEEEEETTEEEEEECC------CCSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEEEEccccCHHHHHHcCCCCCCEEEEEECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHH
Confidence 56678888888866688999999999999999999888888888889999999999999999999999999999999999
Q ss_pred hccccCceeEEccCCccccccC
Q 034085 83 RGARKGRGLVIAPKDYSTKYRY 104 (104)
Q Consensus 83 rgA~kGkglV~sP~dy~~~~~~ 104 (104)
+||++||||++||++||++|||
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~ 142 (142)
T 1qgv_A 121 RGARKGRGLVVSPKDYSTKYRY 142 (142)
T ss_dssp HHHTTTCSEEECCCCCC-----
T ss_pred HHHhcCCeEEeCCCCccccccC
Confidence 9999999999999999999998
No 3
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=99.85 E-value=5.3e-21 Score=132.38 Aligned_cols=103 Identities=32% Similarity=0.666 Sum_probs=94.1
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
++...|.+++++.++-..++.||+++.|++.+-|.+.-.+|++||-+++.+++|+|+|++.++.+++.++++|++.++.+
T Consensus 40 ~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~ 119 (149)
T 3gix_A 40 QLDDILSKTSSDLSKMAAIYLVDVDQTAVYTQYFDISYIPSTVFFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVI 119 (149)
T ss_dssp HHHHHHHHHHTTTTTTEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCceEEEEEECCcCHHHHHHcCCCccCeEEEEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHH
Confidence 35678899999988888999999999999999999976555568888999999999999999999999999999999999
Q ss_pred hhccccCceeEEccCCccccccC
Q 034085 82 YRGARKGRGLVIAPKDYSTKYRY 104 (104)
Q Consensus 82 yrgA~kGkglV~sP~dy~~~~~~ 104 (104)
+|||++|||+|.||++|++++++
T Consensus 120 ~~~~~~g~~~~~s~~~~~~~~~~ 142 (149)
T 3gix_A 120 YRGAMRGKLIVQSPIDPKNIPKY 142 (149)
T ss_dssp HHHHHTTCSEEECCSCGGGSCCC
T ss_pred HHHhhcCCceEECCccccccccc
Confidence 99999999999999999998775
No 4
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=96.18 E-value=0.019 Score=34.80 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=48.7
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
++...|.+++++.++ ..++.+|.++-|+..+.|.+..-+|+++|-+++.+. ++.+. +.+++.+.++.
T Consensus 37 ~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~~~g~--~~~~l~~~l~~ 103 (105)
T 3m9j_A 37 MIKPFFHSLSEKYSN-VIFLEVDVDDCQDVASESEVKSMPTFQFFKKGQKVG---------EFSGA--NKEKLEATINE 103 (105)
T ss_dssp HHHHHHHHHHHHSTT-SEEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEEE---------EEESS--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-eEEEEEEhhhhHHHHHHcCCCcCcEEEEEECCeEEE---------EEeCC--CHHHHHHHHHH
Confidence 356678888888877 778899999999999999998777777774454443 23333 56777776664
No 5
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=95.95 E-value=0.029 Score=36.30 Aligned_cols=66 Identities=18% Similarity=0.372 Sum_probs=47.6
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
|...+.++++..++. .++-||+++-|+..+-|.+.--+|++||-+++-+ + ++.++ +++++.+.|+.
T Consensus 38 ~~p~~~~~~~~~~~~-~~~~vd~d~~~~l~~~~~V~~~PT~~~~~~G~~v--~-------~~~G~--~~~~l~~~i~k 103 (105)
T 3zzx_A 38 IAPKLEELSQSMSDV-VFLKVDVDECEDIAQDNQIACMPTFLFMKNGQKL--D-------SLSGA--NYDKLLELVEK 103 (105)
T ss_dssp HHHHHHHHHHHCTTE-EEEEEETTTCHHHHHHTTCCBSSEEEEEETTEEE--E-------EEESC--CHHHHHHHHHH
T ss_pred CCcchhhhhhccCCe-EEEEEecccCHHHHHHcCCCeecEEEEEECCEEE--E-------EEeCc--CHHHHHHHHHh
Confidence 566788888887774 5788999999999999999776687776444432 2 33442 56777777763
No 6
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=95.71 E-value=0.056 Score=32.59 Aligned_cols=69 Identities=19% Similarity=0.254 Sum_probs=49.4
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.-..++.+|+++-|++.+.|.+..-+|++|| ++..+.- ++.+ ..+.+++...++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~--------~~~g-~~~~~~l~~~l~~~ 107 (109)
T 3tco_A 39 YEPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIF-VNGQLVD--------SLVG-AVDEDTLESTVNKY 107 (109)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEEE--------EEES-CCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEE-cCCcEEE--------eeec-cCCHHHHHHHHHHH
Confidence 55678888888886678899999999999999999876676666 4433221 1222 23567888877764
No 7
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=95.58 E-value=0.035 Score=35.29 Aligned_cols=66 Identities=18% Similarity=0.337 Sum_probs=47.9
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.++ ..++.||+++-|+..+.|.+.--+|++||-+++.+. ++.+. +++++.+.|+.
T Consensus 49 ~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~--~~~~l~~~l~~ 114 (116)
T 3qfa_C 49 IKPFFHSLSEKYSN-VIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVG---------EFSGA--NKEKLEATINE 114 (116)
T ss_dssp HHHHHHHHHTTCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEESSSSEEE---------EEESC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCccccEEEEEeCCeEEE---------EEcCC--CHHHHHHHHHH
Confidence 56678888888888 788999999999999999998766766663333322 23333 66777777764
No 8
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=95.56 E-value=0.051 Score=33.52 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=39.7
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
+...|.+++++..+ ..++.||+++-|+..+.|.+..-+|+++|-+++-+ + ++.+ ..+++++.+.++..+
T Consensus 36 ~~p~~~~~~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~--~-------~~~g-~~~~~~l~~~l~~~~ 104 (105)
T 4euy_A 36 MLRKVNYVLENYNY-VEKIEILLQDMQEIAGRYAVFTGPTVLLFYNGKEI--L-------RESR-FISLENLERTIQLFE 104 (105)
T ss_dssp HHHHHHHHHHTCTT-EEEEEEEECCC---------CCCCEEEEEETTEEE--E-------EEES-SCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC-ceEEEEECCCCHHHHHhcCCCCCCEEEEEeCCeEE--E-------EEeC-CcCHHHHHHHHHHhh
Confidence 56678888887765 67789999999999999999876676666434322 1 1222 236788888877543
No 9
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=95.35 E-value=0.094 Score=31.89 Aligned_cols=70 Identities=14% Similarity=0.194 Sum_probs=49.0
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
++...|.+++++.++-..++.+|+++-|++.+-|.+.--+|++||-+++.+.- +.+ ..+.+++...++..
T Consensus 39 ~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~---------~~g-~~~~~~l~~~l~~~ 108 (111)
T 3gnj_A 39 KVTPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKGVPQILYFKDGEYKGK---------MAG-DVEDDEVEQMIADV 108 (111)
T ss_dssp HHHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEEE---------EES-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCcCCEEEEEECCEEEEE---------Eec-cCCHHHHHHHHHHH
Confidence 35677888888887657889999999999999999976667666644443321 111 24567777777654
No 10
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=94.93 E-value=0.16 Score=30.08 Aligned_cols=68 Identities=18% Similarity=0.253 Sum_probs=46.4
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.++ ..++.+|+++-+++.+-|.+..-+|+++|-+++.+. ++.+ ..+.+++.+.++.+
T Consensus 34 ~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~~~g-~~~~~~l~~~l~~~ 101 (104)
T 2e0q_A 34 LAPIIEELAEDYPQ-VGFGKLNSDENPDIAARYGVMSLPTVIFFKDGEPVD---------EIIG-AVPREEIEIRIKNL 101 (104)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSCEEEEEETTEEEE---------EEES-CCCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHcCC-ceEEEEECCCCHHHHHhCCccccCEEEEEECCeEhh---------hccC-CCCHHHHHHHHHHH
Confidence 45677888888877 888999999999999999997666766663333332 1122 13467777777643
No 11
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=94.91 E-value=0.11 Score=32.49 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=46.1
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.++ ..++.+|+++-+++.+-|.+.--+|++||-+++-+. ++.+. +.+++.+.|+.
T Consensus 42 ~~p~l~~l~~~~~~-~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~--~~~~l~~~i~~ 107 (109)
T 3f3q_A 42 IAPMIEKFSEQYPQ-ADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVA---------KVVGA--NPAAIKQAIAA 107 (109)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEESS--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCCccCEEEEEECCEEEE---------EEeCC--CHHHHHHHHHh
Confidence 55678888888877 677899999999999999997666766665444332 23333 44666666653
No 12
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=94.74 E-value=0.28 Score=29.70 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=47.5
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.-..++.+|+++-|++.+-|.+.--+|+++|-+++-+. ++.+ ..+.+++.+.++..
T Consensus 38 ~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~G-~~~~~~l~~~l~~~ 106 (108)
T 2trx_A 38 IAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAA---------TKVG-ALSKGQLKEFLDAN 106 (108)
T ss_dssp HHHHHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEEETTEEEE---------EEES-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEEeCCEEEE---------EEec-CCCHHHHHHHHHHh
Confidence 456788888888756888999999999999999997666765663333322 1222 23567787777653
No 13
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=94.72 E-value=0.11 Score=32.46 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=47.3
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.++ ..++.||+++-+++.+-|.+.--+|+++|-+++-+ .++.+.. ++++.+.++..
T Consensus 52 ~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~---------~~~~G~~--~~~l~~~l~~~ 118 (122)
T 2vlu_A 52 MAPVFADLAKKFPN-AVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVK---------DRVVGAI--KEELTAKVGLH 118 (122)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE---------EEEESSC--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-cEEEEEECCCCHHHHHHcCCCcccEEEEEeCCEEE---------EEEeCcC--HHHHHHHHHHH
Confidence 45678888888877 77899999999999999999765676555333322 1334444 67888877754
No 14
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=94.51 E-value=0.095 Score=33.38 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=46.3
Q ss_pred chHHHHHhHHhhhcc-eEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~f-a~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.++- ..++.||+++-|++.+-|.+.--+|+++|-+++-+. ++.+. +++++.+.|+.+
T Consensus 51 ~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~--~~~~l~~~l~~~ 119 (121)
T 2j23_A 51 IGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRAMPTFVFFKNGQKID---------TVVGA--DPSKLQAAITQH 119 (121)
T ss_dssp HHHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCSSSEEEEEETTEEEE---------EEESS--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCcccEEEEEECCeEEe---------eEcCC--CHHHHHHHHHHh
Confidence 456677788777664 677899999999999999997656766653333322 22333 567777777653
No 15
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=94.51 E-value=0.13 Score=33.67 Aligned_cols=76 Identities=14% Similarity=0.127 Sum_probs=54.6
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
.+...|.+++++.++-..++.||+++-|++.+-|.+.--+|+++|-+++-+ . ++.+ ..+.+++.+.++.+
T Consensus 41 ~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~--~-------~~~G-~~~~~~l~~~l~~~ 110 (140)
T 3hz4_A 41 AMEPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPV--W-------EQVG-QIYPSILKNAVRDM 110 (140)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEETTEEE--E-------EEES-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEeCCcEE--E-------EEcC-CCCHHHHHHHHHHH
Confidence 356788889998888788899999999999999999654576666434332 1 1222 24578899988888
Q ss_pred hhcccc
Q 034085 82 YRGARK 87 (104)
Q Consensus 82 yrgA~k 87 (104)
...+.+
T Consensus 111 l~~~~~ 116 (140)
T 3hz4_A 111 LQHGEE 116 (140)
T ss_dssp HHHHHH
T ss_pred hccccc
Confidence 766544
No 16
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=94.48 E-value=0.24 Score=29.65 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=45.9
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.+.-..++.+|.++-+++.+-|.+..-+|+++|-+++-+. ++.+ .+.+++.+.++.
T Consensus 38 ~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~g--~~~~~l~~~i~~ 104 (106)
T 1xwb_A 38 ISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVE---------EFAG--ANAKRLEDVIKA 104 (106)
T ss_dssp HHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEES--CCHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCcccEEEEEcCCcEEE---------EEcC--CCHHHHHHHHHH
Confidence 456678888887556788999999999999999997666766664444332 2233 245667776654
No 17
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=94.41 E-value=0.2 Score=30.54 Aligned_cols=68 Identities=9% Similarity=0.123 Sum_probs=46.8
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.=..++.+|.++-+++.+-|.+..-+|+++|-+++-+. ++.+. +.+++.+.++.+
T Consensus 42 ~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~--~~~~l~~~l~~~ 109 (112)
T 1ep7_A 42 IAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKAD---------DLVGA--SQDKLKALVAKH 109 (112)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEEEEEETTEEEE---------EEESC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEEEEEECCeEEE---------EEcCC--CHHHHHHHHHHH
Confidence 456678888877744678899999999999999997656765553333222 23333 567888887764
No 18
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=94.24 E-value=0.35 Score=28.97 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=46.5
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.++-..++.+|+++-|++.+-|.+.--+|+++|-+++-+.- +.+ ..+++++.+.++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~---------~~G-~~~~~~l~~~l~~ 105 (107)
T 2i4a_A 38 IGPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLVRDGKVIDK---------KVG-ALPKSQLKAWVES 105 (107)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEEETTEEEEE---------EES-CCCHHHHHHHHHH
T ss_pred HhHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEEeCCEEEEE---------ecC-CCCHHHHHHHHHh
Confidence 4567788888887667889999999999999999876667666633333221 112 2356777777654
No 19
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=94.12 E-value=0.28 Score=29.36 Aligned_cols=67 Identities=21% Similarity=0.374 Sum_probs=46.7
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 79 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie 79 (104)
+...|.+++++.++-..++.+|+++-|+..+.|.+..-+|+++|-+++.+.--.| ..+.+++...++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~g----------~~~~~~l~~~l~ 103 (106)
T 3die_A 37 IAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVG----------FQPKENLAEVLD 103 (106)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSBSEEEEEETTEEEEEEES----------CCCHHHHHHHHH
T ss_pred HhHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcccCEEEEEeCCeEEEEEeC----------CCCHHHHHHHHH
Confidence 5667888888888768889999999999999999976567666643443332112 234566666665
No 20
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=93.98 E-value=0.16 Score=31.51 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=44.8
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.++ ..++.+|+++-+++.+-|.+..-+|+++| ++.-+ ++ ++.+. +++++.+.++.
T Consensus 44 ~~~~l~~l~~~~~~-v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~-~~-------~~~G~--~~~~l~~~l~~ 109 (112)
T 1syr_A 44 IAPFYEECSKTYTK-MVFIKVDVDEVSEVTEKENITSMPTFKVY-KNGSS-VD-------TLLGA--NDSALKQLIEK 109 (112)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEETTTTHHHHHHTTCCSSSEEEEE-ETTEE-EE-------EEESC--CHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC-CEEEEEECCCCHHHHHHcCCCcccEEEEE-ECCcE-EE-------EEeCC--CHHHHHHHHHH
Confidence 45667788887776 67788999999999999998655576555 43222 11 23333 67888777764
No 21
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=93.87 E-value=0.34 Score=28.92 Aligned_cols=69 Identities=17% Similarity=0.338 Sum_probs=46.6
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.-..++.+|+++-|++.+-|.+.--+|+++|-+++.+..-.| ..+.+++.+.++..
T Consensus 36 ~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~g----------~~~~~~l~~~l~~~ 104 (109)
T 2yzu_A 36 IAPILEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILFKDGQPVEVLVG----------AQPKRNYQAKIEKH 104 (109)
T ss_dssp HHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEEEES----------CCCHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEEeCCcEeeeEeC----------CCCHHHHHHHHHHH
Confidence 4566788888877557789999999999999999976667666633443322112 23567777777643
No 22
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=93.86 E-value=0.26 Score=32.01 Aligned_cols=67 Identities=7% Similarity=0.141 Sum_probs=46.6
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.++ ..++.||+++-+++.+-|.+.--+|++|| ++..+. . ++.+ .+.+++.+.|+..
T Consensus 55 ~~p~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~-~~G~~~-~-------~~~G--~~~~~l~~~l~~~ 121 (125)
T 1r26_A 55 IERPMEKIAYEFPT-VKFAKVDADNNSEIVSKCRVLQLPTFIIA-RSGKML-G-------HVIG--ANPGMLRQKLRDI 121 (125)
T ss_dssp THHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEE-E-------EEES--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHcCCCcccEEEEE-eCCeEE-E-------EEeC--CCHHHHHHHHHHH
Confidence 55677888887766 57789999999999999999766676655 443321 1 3334 2557787777764
No 23
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=93.70 E-value=0.45 Score=30.69 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=48.4
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
+...|.+++++.++=..++.||+++-+++.+-|.+..-+|+++|-+++-+. ++.+. .+.+++.+.|+.+-
T Consensus 68 ~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~-~~~~~l~~~i~~~l 137 (140)
T 1v98_A 68 VSPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLFRRGAPVA---------TWVGA-SPRRVLEERLRPYL 137 (140)
T ss_dssp HHHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEESC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEEeCCcEEE---------EEeCC-CCHHHHHHHHHHHH
Confidence 556788888888744788999999999999999997666765554333322 22222 34678888877654
No 24
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=93.58 E-value=0.42 Score=28.52 Aligned_cols=68 Identities=24% Similarity=0.362 Sum_probs=45.8
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.+.=..++.+|+++-|++.+-|.+.--+|+++|-+++-+. ++.+. .+.+++.+.++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~~~G~-~~~~~l~~~l~~ 103 (105)
T 1fb6_A 36 IAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKE---------SIIGA-VPKSTLTDSIEK 103 (105)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEEEC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEEeCCeEEE---------EEecC-CCHHHHHHHHHh
Confidence 456778888888755778899999999999999986655765553344332 12222 345677777664
No 25
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=93.48 E-value=0.51 Score=28.59 Aligned_cols=69 Identities=13% Similarity=0.238 Sum_probs=47.5
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.-..++.+|+++-|++.+-|.+.--+|+++| ++-.+.-. +.+ ..+.+++.+.++.+
T Consensus 43 ~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~--------~~g-~~~~~~l~~~l~~~ 111 (115)
T 1thx_A 43 MSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLV-KGEQILDS--------TEG-VISKDKLLSFLDTH 111 (115)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCSSSEEEEE-ETTEEEEE--------EES-CCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCceeEEEEE-cCCEEEEE--------ecC-CCCHHHHHHHHHHH
Confidence 45667788888764478899999999999999999766676566 54333211 122 23568888888765
No 26
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=93.45 E-value=0.28 Score=31.09 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=44.6
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 79 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie 79 (104)
+...|.+++++.++ ..++.+|+++-+++.+-|.+.--+|+++| ++-.+. .++.+.. ++++.+.|+
T Consensus 48 ~~p~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~--------~~~~G~~--~~~l~~~l~ 112 (114)
T 2oe3_A 48 MQPHLTKLIQAYPD-VRFVKCDVDESPDIAKECEVTAMPTFVLG-KDGQLI--------GKIIGAN--PTALEKGIK 112 (114)
T ss_dssp THHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSBSEEEEE-ETTEEE--------EEEESSC--HHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHCCCCcccEEEEE-eCCeEE--------EEEeCCC--HHHHHHHHH
Confidence 45677888888877 78899999999999999999765665555 443221 1233433 567766665
No 27
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=93.32 E-value=0.43 Score=31.07 Aligned_cols=72 Identities=17% Similarity=0.300 Sum_probs=50.1
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+|...|.+++++.+.=..++.||.++-+++.+-|.+..-+|++|| ++-.+. +--+| ..+.++|.+.|+..
T Consensus 72 ~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~~~~G--------~~~~~~l~~~l~~~ 141 (148)
T 3p2a_A 72 SFAPIFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLY-RNGKMI-DMLNG--------AVPKAPFDNWLDEQ 141 (148)
T ss_dssp HHHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEE-EEESS--------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEE-ECCeEE-EEEeC--------CCCHHHHHHHHHHH
Confidence 356678888888865578889999999999999999776676565 433322 22222 24568888888765
Q ss_pred hh
Q 034085 82 YR 83 (104)
Q Consensus 82 yr 83 (104)
-.
T Consensus 142 l~ 143 (148)
T 3p2a_A 142 LS 143 (148)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 28
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=93.20 E-value=0.43 Score=29.12 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=46.4
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.-..++.+|+++-++..+-|.+.--+|+++|-+++-+. ++.+. .+++++.+.++.+
T Consensus 41 ~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~-~~~~~l~~~l~~~ 109 (112)
T 1t00_A 41 IAPSLEAIAAEYGDKIEIVKLNIDENPGTAAKYGVMSIPTLNVYQGGEVAK---------TIVGA-KPKAAIVRDLEDF 109 (112)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEESC-CCHHHHHHHTHHH
T ss_pred cCHHHHHHHHHhcCCeEEEEEEcCCCHHHHHhCCCCcccEEEEEeCCEEEE---------EEeCC-CCHHHHHHHHHHH
Confidence 456677888887655788999999999999999997656765553333321 22222 3467777777654
No 29
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=93.09 E-value=0.49 Score=28.50 Aligned_cols=69 Identities=20% Similarity=0.239 Sum_probs=45.8
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.-..++.+|.++-|++.+-|.+.--+|+++|-+++.+. ++.+ ..+++++.+.++.+
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~G-~~~~~~l~~~l~~~ 105 (107)
T 1dby_A 37 IAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCE---------TIIG-AVPKATIVQTVEKY 105 (107)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEESSSSEEE---------EEES-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEEeCCEEEE---------EEeC-CCCHHHHHHHHHHH
Confidence 455677888877655778899999999999999987655655553333322 1222 23457777777654
No 30
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=93.01 E-value=1.1 Score=28.99 Aligned_cols=69 Identities=13% Similarity=0.264 Sum_probs=47.2
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.-..++.||+++-+++.+-|.+.--+|+++| ++.-+. . ++.+ ..+.+++.+.++.+
T Consensus 58 ~~p~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G-~~~~~~l~~~l~~~ 126 (128)
T 2o8v_B 58 IAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVA-A-------TKVG-ALSKGQLKEFLDAN 126 (128)
T ss_dssp THHHHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEE-ETTEEE-E-------EEES-CCCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEE-eCCEEE-E-------EEcC-CCCHHHHHHHHHHh
Confidence 45678888888875578899999999999999999765565555 543321 1 1222 23567788777653
No 31
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=92.89 E-value=0.34 Score=30.97 Aligned_cols=69 Identities=13% Similarity=0.225 Sum_probs=48.5
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.-..++.||+++-+++.+-|.+.--+|++||-++..+.. ..+ ..+.+++.+.|+.+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~~g~~~~---------~~G-~~~~~~l~~~l~~~ 137 (141)
T 3hxs_A 69 VAPILEELSKEYAGKIYIYKVNVDKEPELARDFGIQSIPTIWFVPMKGEPQV---------NMG-ALSKEQLKGYIDKV 137 (141)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEECSSSCCEE---------EES-CCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCceEEEEEECCCCHHHHHHcCCCCcCEEEEEeCCCCEEE---------EeC-CCCHHHHHHHHHHH
Confidence 4567888888888668889999999999999999977667555534433321 122 23567787777654
No 32
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=92.88 E-value=0.42 Score=29.73 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=53.2
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEee---cCChhHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWA---LKDKQEFIDIVE 79 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~---~~~kQefIDiie 79 (104)
+...|.+++++.+.-..++.||+++-+++.+-|.+.--+|+++|-+++. -.++.+. -.+.+++.+.++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~~~~---------~~~~~g~~~~~~~~~~l~~~l~ 109 (122)
T 3aps_A 39 FAPEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLYQYERA---------KKSIWEEQINSRDAKTIAALIY 109 (122)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEEEEGG---------GTEEEEEEECCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCcCCHHHHHHcCCCccceEEEEeCCCc---------cceeeccccCcCCHHHHHHHHH
Confidence 5567888888887557788999999999999999976667655533332 1234443 257889999998
Q ss_pred HHhhccc
Q 034085 80 TVYRGAR 86 (104)
Q Consensus 80 ~iyrgA~ 86 (104)
..-..+.
T Consensus 110 ~~l~~~~ 116 (122)
T 3aps_A 110 GKLETLQ 116 (122)
T ss_dssp HHHHCC-
T ss_pred HHHHhhh
Confidence 8876553
No 33
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=92.85 E-value=0.61 Score=28.23 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=45.6
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
+...|.+++++.++ ..++.+|+++-|++.+-|.+..-+|++||-+++-+. ++.+ .+++++.+.++.+-
T Consensus 44 ~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~---------~~~g--~~~~~l~~~l~~~~ 111 (113)
T 1ti3_A 44 IAPIFAELAKKFPN-VTFLKVDVDELKAVAEEWNVEAMPTFIFLKDGKLVD---------KTVG--ADKDGLPTLVAKHA 111 (113)
T ss_dssp HHHHHHHHHHHCSS-EEEEEEETTTCHHHHHHHHCSSTTEEEEEETTEEEE---------EEEC--CCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cEEEEEEccccHHHHHhCCCCcccEEEEEeCCEEEE---------EEec--CCHHHHHHHHHHhh
Confidence 45667777777664 677889999999999999997666765653333222 2223 14577888777653
No 34
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=92.63 E-value=0.25 Score=29.45 Aligned_cols=66 Identities=12% Similarity=0.226 Sum_probs=45.0
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.++ ..++.+|+++-|++.+.|.+...+|+++|-+++.+. ++.+ . +.+++.+.++.
T Consensus 37 ~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~---------~~~G-~-~~~~l~~~l~~ 102 (104)
T 2vim_A 37 IAPKVEALAKEIPE-VEFAKVDVDQNEEAAAKYSVTAMPTFVFIKDGKEVD---------RFSG-A-NETKLRETITR 102 (104)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE---------EEES-S-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHCCC-CEEEEEeccCCHHHHHHcCCccccEEEEEeCCcEEE---------EEeC-C-CHHHHHHHHHh
Confidence 45667778877665 567889999999999999997766766654444332 2333 1 45677777664
No 35
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=92.31 E-value=0.28 Score=29.94 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=35.3
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeC
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 49 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrn 49 (104)
+...|.+++++.++ ..++.+|+++-|++.+-|.+.--+|++||-++
T Consensus 39 ~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G 84 (107)
T 1gh2_A 39 IAPAFSSMSNKYPQ-AVFLEVDVHQCQGTAATNNISATPTFQFFRNK 84 (107)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSSSEEEEEETT
T ss_pred HHHHHHHHHHHCCC-cEEEEEECccCHHHHHhcCCCcccEEEEEECC
Confidence 45677888887765 56789999999999999999765686666333
No 36
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=92.23 E-value=0.58 Score=29.92 Aligned_cols=70 Identities=20% Similarity=0.415 Sum_probs=47.6
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
+...|.+++++.++ ..++.||+++-+++.+-|.+.--+|+++| ++..+. . ++.+. +.+++.+.++.+-
T Consensus 64 ~~~~l~~l~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G~--~~~~l~~~l~~~~ 131 (139)
T 3d22_A 64 IAPYYIELSENYPS-LMFLVIDVDELSDFSASWEIKATPTFFFL-RDGQQV-D-------KLVGA--NKPELHKKITAIL 131 (139)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCEESEEEEE-ETTEEE-E-------EEESC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CEEEEEeCcccHHHHHHcCCCcccEEEEE-cCCeEE-E-------EEeCC--CHHHHHHHHHHHh
Confidence 45567777777665 56788999999999999999655565555 543332 1 23333 5688888888766
Q ss_pred hc
Q 034085 83 RG 84 (104)
Q Consensus 83 rg 84 (104)
.+
T Consensus 132 ~~ 133 (139)
T 3d22_A 132 DS 133 (139)
T ss_dssp HT
T ss_pred cc
Confidence 54
No 37
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=92.19 E-value=0.65 Score=27.93 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=43.9
Q ss_pred chHHHHHhHHhhh---cceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034085 3 MDEVLSSVAETIK---NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 79 (104)
Q Consensus 3 mDe~L~~~a~~v~---~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie 79 (104)
+...|.+++++.+ .-..++.+|.++-+++.+-|.+.--+|+++|-+++.+.- -+| ..+.+++.+.++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~~--~~g--------~~~~~~l~~~l~ 108 (111)
T 3uvt_A 39 LAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLFRGGKKVSE--HSG--------GRDLDSLHRFVL 108 (111)
T ss_dssp HHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEEE--ECS--------CCSHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEEeCCcEEEe--ccC--------CcCHHHHHHHHH
Confidence 4566777777654 246778999999999999999976557666644443322 222 134566666654
No 38
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=92.10 E-value=0.88 Score=28.56 Aligned_cols=69 Identities=20% Similarity=0.305 Sum_probs=46.4
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.-..++.+|+++-+++.+-|.+.--+|+++| ++..+.- ++.+ ..+.+++.+.++.+
T Consensus 49 ~~~~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~--------~~~G-~~~~~~l~~~l~~~ 117 (119)
T 1w4v_A 49 LGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAM-KNGDVVD--------KFVG-IKDEDQLEAFLKKL 117 (119)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEE-ETTEEEE--------EEES-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEE-eCCcEEE--------EEcC-CCCHHHHHHHHHHH
Confidence 55677888887765577899999999999999999765566555 5433321 1222 22567787777654
No 39
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.09 E-value=0.86 Score=28.93 Aligned_cols=73 Identities=15% Similarity=0.297 Sum_probs=50.4
Q ss_pred cchHHHHHhHHhhhcc---eEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHH
Q 034085 2 QMDEVLSSVAETIKNF---AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 78 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~f---a~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDii 78 (104)
++...|.+++++.++- ..++.||+++-+++.+-|.+.--+|+++| ++..+ ..+ .| ..+.++|.+.+
T Consensus 51 ~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~-~~~-~g--------~~~~~~l~~~l 119 (140)
T 2dj1_A 51 QFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKIL-KKGQA-VDY-DG--------SRTQEEIVAKV 119 (140)
T ss_dssp TTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEEE-ETTEE-EEC-CS--------CCCHHHHHHHH
T ss_pred HhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEEE-ECCcE-EEc-CC--------CCCHHHHHHHH
Confidence 3566788888888764 77889999999999999999765666566 44322 111 12 23568888888
Q ss_pred HHHhhcc
Q 034085 79 ETVYRGA 85 (104)
Q Consensus 79 e~iyrgA 85 (104)
+..-..+
T Consensus 120 ~~~~~~~ 126 (140)
T 2dj1_A 120 REVSQPD 126 (140)
T ss_dssp HHHHSSS
T ss_pred HHhcCCC
Confidence 8765544
No 40
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.00 E-value=0.5 Score=30.45 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=47.5
Q ss_pred cchHHHHHhHHhhhc-ceEEEEEeCCCccccccccccc------ccceEEEEEeCceeEEecCCCCCceEEeecCChhHH
Q 034085 2 QMDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELY------DPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEF 74 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~-fa~IY~vDi~eVpdfn~myeL~------dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQef 74 (104)
++...|.+++++.+. -..++.||+++-|++.+-|.+. --+|++||-+++-+.-=.|.-+...+.=.+..+..+
T Consensus 43 ~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~~~~~~~Pt~~~~~~G~~~~~~~G~~~~~~l~~~l~~~~~~ 122 (137)
T 2dj0_A 43 SFAPIYADLSLKYNCTGLNFGKVDVGRYTDVSTRYKVSTSPLTKQLPTLILFQGGKEAMRRPQIDKKGRAVSWTFSEENV 122 (137)
T ss_dssp TTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHHHTTCCCCSSSSCSSEEEEESSSSEEEEESCBCSSSCBCCCCCCHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHHHccCcccCCcCCCCEEEEEECCEEEEEecCcCchHHHHHHHhcccch
Confidence 456678888888863 4677899999999999999986 555766664454443333433334444445554444
Q ss_pred H
Q 034085 75 I 75 (104)
Q Consensus 75 I 75 (104)
+
T Consensus 123 ~ 123 (137)
T 2dj0_A 123 I 123 (137)
T ss_dssp H
T ss_pred h
Confidence 3
No 41
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=91.50 E-value=0.54 Score=29.94 Aligned_cols=49 Identities=6% Similarity=0.135 Sum_probs=38.6
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCc
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 50 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnk 50 (104)
++...|.+++++.+.-..++.||+++-++..+-|.+.--+|+++|-+++
T Consensus 59 ~~~p~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~~~G~ 107 (128)
T 3ul3_B 59 MQSTEMDKLQKYYGKRIYLLKVDLDKNESLARKFSVKSLPTIILLKNKT 107 (128)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEEGGGCHHHHHHTTCCSSSEEEEEETTE
T ss_pred HHhHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCCcCEEEEEECCE
Confidence 3566788889888767888999999999999999997766766663344
No 42
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=91.29 E-value=1.1 Score=30.11 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=48.2
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.=..++.||+++-|+..+-|.+.--+|+++| ++-.+. + ++.+. .+++++.+.++..
T Consensus 82 ~~p~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~-~~G~~~-~-------~~~G~-~~~~~l~~~l~~~ 150 (155)
T 2ppt_A 82 MAPQFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF-HKGREL-A-------RAAGA-RPASELVGFVRGK 150 (155)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEE-ETTEEE-E-------EEESC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEE-eCCeEE-E-------EecCC-CCHHHHHHHHHHH
Confidence 56678888888875578899999999999999999766676666 543331 1 12222 3567888887764
No 43
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.24 E-value=0.26 Score=31.03 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=48.8
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
++...|.+++++.++-..++.||+++-+++.+-|.+.--+|++||-+++.+. .++.+ ..+.+++++.++..
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~~~~~--------~~~~G-~~~~~~l~~~l~~~ 122 (130)
T 2dml_A 52 RLTPEWKKAATALKDVVKVGAVNADKHQSLGGQYGVQGFPTIKIFGANKNKP--------EDYQG-GRTGEAIVDAALSA 122 (130)
T ss_dssp GGHHHHHHHHHHTTTTSEEEEEETTTCHHHHHHHTCCSSSEEEEESSCTTSC--------EECCS-CCSHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHhcCceEEEEEeCCCCHHHHHHcCCCccCEEEEEeCCCCeE--------EEeec-CCCHHHHHHHHHHH
Confidence 4567788889888887888999999999999999997666755554333211 12222 23557777766654
Q ss_pred h
Q 034085 82 Y 82 (104)
Q Consensus 82 y 82 (104)
-
T Consensus 123 l 123 (130)
T 2dml_A 123 L 123 (130)
T ss_dssp H
T ss_pred H
Confidence 3
No 44
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=90.28 E-value=1.1 Score=28.16 Aligned_cols=77 Identities=17% Similarity=0.118 Sum_probs=50.5
Q ss_pred chHHHHHhHHhhhcceEEEEEe--CCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVD--ISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vD--i~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.+.=..++.|| +++-+++.+.|.+.--+|+++|-++..+. .++.+ ..++++|.+.++.
T Consensus 44 ~~~~l~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~~v~~~Pt~~~~~~~G~~~--------~~~~G-~~~~~~l~~~l~~ 114 (126)
T 2l57_A 44 MQKELSYVSKEREGKFNIYYARLEEEKNIDLAYKYDANIVPTTVFLDKEGNKF--------YVHQG-LMRKNNIETILNS 114 (126)
T ss_dssp HHHHHHHHHHHSSSSCEEEEEETTSSHHHHHHHHTTCCSSSEEEEECTTCCEE--------EEEES-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCCCCchHHHHHHcCCcceeEEEEECCCCCEE--------EEecC-CCCHHHHHHHHHH
Confidence 4556778888775556788899 99999999999986655644442121111 11222 3467899999998
Q ss_pred HhhccccC
Q 034085 81 VYRGARKG 88 (104)
Q Consensus 81 iyrgA~kG 88 (104)
.......|
T Consensus 115 ~~~~~~~~ 122 (126)
T 2l57_A 115 LGVKEGHH 122 (126)
T ss_dssp HCCCCCCC
T ss_pred Hhcccccc
Confidence 87666544
No 45
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=90.15 E-value=0.58 Score=28.32 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=46.1
Q ss_pred cchHHHHHhHHhhhc---ceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHH
Q 034085 2 QMDEVLSSVAETIKN---FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 78 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~---fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDii 78 (104)
++...+.+++++.+. -..++.+|.++-+++.+.|.+.--+|++||-+++-+.-.--+| ..+.+++...+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~~~~~~~g--------~~~~~~l~~~l 112 (120)
T 1mek_A 41 ALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFRNGDTASPKEYTA--------GREADDIVNWL 112 (120)
T ss_dssp TTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEEESSCSSSCEECCC--------CSSHHHHHHHH
T ss_pred HhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEEeCCCcCCcccccC--------ccCHHHHHHHH
Confidence 456778888887763 3567889999999999999997666766663333210011122 33567777777
Q ss_pred HHH
Q 034085 79 ETV 81 (104)
Q Consensus 79 e~i 81 (104)
+..
T Consensus 113 ~~~ 115 (120)
T 1mek_A 113 KKR 115 (120)
T ss_dssp HTT
T ss_pred Hhc
Confidence 643
No 46
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=90.04 E-value=1.7 Score=24.93 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=44.4
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
++...|.+++++.+.-..++.+|+++-++..+-|.+.--+|+++ +++- ++.+. .+.+++.+.++.
T Consensus 19 ~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-----------~~~G~-~~~~~l~~~l~~ 83 (85)
T 1fo5_A 19 AAKRVVEEVANEMPDAVEVEYINVMENPQKAMEYGIMAVPTIVI--NGDV-----------EFIGA-PTKEALVEAIKK 83 (85)
T ss_dssp THHHHHHHHHHHCSSSEEEEEEESSSSCCTTTSTTTCCSSEEEE--TTEE-----------ECCSS-SSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHCCCcccCEEEE--CCEE-----------eeecC-CCHHHHHHHHHH
Confidence 35567888888777557789999999999999999875556433 4432 22332 356777777764
No 47
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=89.91 E-value=0.78 Score=28.20 Aligned_cols=48 Identities=15% Similarity=0.264 Sum_probs=36.3
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCc
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 50 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnk 50 (104)
+...|.+++++.++=..++.+|+++-|++.+-|.+.--+|+++|-+++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~g~ 95 (121)
T 2i1u_A 48 VAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQ 95 (121)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTE
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEECCE
Confidence 556778888887655778999999999999999987656765553333
No 48
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=89.66 E-value=1.1 Score=28.29 Aligned_cols=69 Identities=10% Similarity=-0.036 Sum_probs=44.8
Q ss_pred chHHHHHhHHhhh-----cceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHH
Q 034085 3 MDEVLSSVAETIK-----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI 77 (104)
Q Consensus 3 mDe~L~~~a~~v~-----~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDi 77 (104)
|...+.++|++.+ .-..++.||.++-+++.+-|.+.--+|+++|-+++.+. ..+..+ ..+.+++.+.
T Consensus 51 ~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~-------~~~~~G-~~~~~~l~~~ 122 (127)
T 3h79_A 51 AMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPDVIERMRVSGFPTMRYYTRIDKQE-------PFEYSG-QRYLSLVDSF 122 (127)
T ss_dssp HHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEECSSCSSS-------CEECCS-CCCHHHHHHH
T ss_pred HhHHHHHHHHHHHhcccCCCeEEEEEEccccHhHHHhcCCccCCEEEEEeCCCCCC-------ceEecC-CccHHHHHHH
Confidence 4556777777653 34788999999999999999998777866665443321 011222 2456777666
Q ss_pred HH
Q 034085 78 VE 79 (104)
Q Consensus 78 ie 79 (104)
|+
T Consensus 123 i~ 124 (127)
T 3h79_A 123 VF 124 (127)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 49
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=89.64 E-value=3.5 Score=28.94 Aligned_cols=74 Identities=14% Similarity=0.271 Sum_probs=52.3
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+|...|.+++++.+.-..++.||+++-++..+-|.+.--+|+++| ++..+.- ++.+ ..+++++.+.++.+
T Consensus 47 ~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~--------~~~G-~~~~~~l~~~l~~~ 116 (222)
T 3dxb_A 47 MIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVAA--------TKVG-ALSKGQLKEFLDAN 116 (222)
T ss_dssp HHHHHHHHHHHHTTTTCEEEEEETTTCTTTGGGGTCCSBSEEEEE-ETTEEEE--------EEES-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCCCHHHHHHcCCCcCCEEEEE-ECCeEEE--------Eecc-ccChHHHHHHHHhh
Confidence 356788889998887678899999999999999999765575555 4322211 2222 24678999999887
Q ss_pred hhcc
Q 034085 82 YRGA 85 (104)
Q Consensus 82 yrgA 85 (104)
-.+.
T Consensus 117 l~~~ 120 (222)
T 3dxb_A 117 LAGS 120 (222)
T ss_dssp SCCS
T ss_pred cccc
Confidence 6554
No 50
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=89.62 E-value=0.84 Score=27.33 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=34.2
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEE
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 46 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFF 46 (104)
+...|.+++++.++-..++.+|+++-++..+-|.+.--+|+++|
T Consensus 35 ~~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 78 (105)
T 1nsw_A 35 MAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILF 78 (105)
T ss_dssp HHHHHHHHHHHSTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEEECcCCHHHHHHcCCccccEEEEE
Confidence 45567788887776578899999999999999998665565555
No 51
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=89.30 E-value=0.38 Score=33.96 Aligned_cols=70 Identities=9% Similarity=0.073 Sum_probs=53.2
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
|.=+|.+++++...=..|+-||+++-|+.-.-|.+..=+|++||=+++-+. ++.++ .+|+++.+.|+.+-
T Consensus 53 iaPvleela~e~~~~v~~~KVdvDe~~~la~~ygV~siPTlilFkdG~~v~---------~~vG~-~~k~~l~~~l~~~l 122 (137)
T 2qsi_A 53 LAVVLPELINAFPGRLVAAEVAAEAERGLMARFGVAVCPSLAVVQPERTLG---------VIAKI-QDWSSYLAQIGAML 122 (137)
T ss_dssp HHHHHHHHHHTSTTTEEEEEECGGGHHHHHHHHTCCSSSEEEEEECCEEEE---------EEESC-CCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEE---------EEeCC-CCHHHHHHHHHHHh
Confidence 455788888888766889999999999999999998888988886665543 44443 45677777776544
No 52
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=89.29 E-value=1.2 Score=28.23 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=46.8
Q ss_pred chHHHH--HhHHhhhcceEEEEEeC---CCcccccccccc---cccceEEEE-EeCceeEEecCCCCCceEEeecCChhH
Q 034085 3 MDEVLS--SVAETIKNFAVIYLVDI---SEVPDFNTMYEL---YDPSTVMFF-FRNKHIMIDLGTGNNNKINWALKDKQE 73 (104)
Q Consensus 3 mDe~L~--~~a~~v~~fa~IY~vDi---~eVpdfn~myeL---~dP~tvMFF-frnkHm~vD~GTgnnnKin~~~~~kQe 73 (104)
+...|. +++++.++-..++.||+ ++-+++.+-|.+ .--+|++|| -+++-+.--.|..-.+. ...+.++
T Consensus 47 ~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~---~~~~~~~ 123 (133)
T 3fk8_A 47 LDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAYGDPIQDGIPAVVVVNSDGKVRYTTKGGELANA---RKMSDQG 123 (133)
T ss_dssp HHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHTTCGGGGCSSEEEEECTTSCEEEECCSCTTTTG---GGSCHHH
T ss_pred HHHHhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHhCCccCCccceEEEECCCCCEEEEecCCccccc---ccCCHHH
Confidence 344566 77777755577889999 899999999998 665564444 23443333333211111 2446677
Q ss_pred HHHHHHHH
Q 034085 74 FIDIVETV 81 (104)
Q Consensus 74 fIDiie~i 81 (104)
+.+.++.+
T Consensus 124 l~~~l~~l 131 (133)
T 3fk8_A 124 IYDFFAKI 131 (133)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77777654
No 53
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.21 E-value=1.3 Score=27.65 Aligned_cols=73 Identities=11% Similarity=0.157 Sum_probs=49.7
Q ss_pred cchHHHHHhHHhhh----cceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHH
Q 034085 2 QMDEVLSSVAETIK----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI 77 (104)
Q Consensus 2 ~mDe~L~~~a~~v~----~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDi 77 (104)
++...|.+++++.+ .-..++.||+++-+++.+-|.+.--+|+++|-+++. +.--.| ..+.+++.+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~--~~~~~G--------~~~~~~l~~~ 111 (133)
T 1x5d_A 42 NLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLASRYGIRGFPTIKIFQKGES--PVDYDG--------GRTRSDIVSR 111 (133)
T ss_dssp THHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHHHHHTCCSSSEEEEEETTEE--EEEECS--------CCSHHHHHHH
T ss_pred hhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHHHhCCCCeeCeEEEEeCCCc--eEEecC--------CCCHHHHHHH
Confidence 35567788888886 557889999999999999999976566555544442 221222 2356888888
Q ss_pred HHHHhhc
Q 034085 78 VETVYRG 84 (104)
Q Consensus 78 ie~iyrg 84 (104)
++.....
T Consensus 112 l~~~~~~ 118 (133)
T 1x5d_A 112 ALDLFSD 118 (133)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 8776544
No 54
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=89.03 E-value=2.1 Score=24.55 Aligned_cols=65 Identities=12% Similarity=0.132 Sum_probs=44.7
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.+.-..++.+|+++-|+..+-|.+.--+|+++ +++. ++.+. .+.+++.+.++..
T Consensus 19 ~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~--~G~~-----------~~~G~-~~~~~l~~~l~~~ 83 (85)
T 1nho_A 19 AIEVVDEAKKEFGDKIDVEKIDIMVDREKAIEYGLMAVPAIAI--NGVV-----------RFVGA-PSREELFEAINDE 83 (85)
T ss_dssp HHHHHHHHHHHHCSSCCEEEECTTTCGGGGGGTCSSCSSEEEE--TTTE-----------EEECS-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCHHHHHhCCceeeCEEEE--CCEE-----------EEccC-CCHHHHHHHHHHH
Confidence 4567778888777556788999999999999999876556433 4432 33442 3567887777643
No 55
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=88.79 E-value=2.1 Score=26.85 Aligned_cols=76 Identities=16% Similarity=0.154 Sum_probs=48.7
Q ss_pred chHHHHHhHHhhh--cceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIK--NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~--~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.+ .-..++.||.++-+...+-|.+.--+|++||-+++.+ ..-++.+...+.+++...|+.
T Consensus 43 ~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~~~-------~~~~~~gg~~~~~~l~~~l~~ 115 (133)
T 2dj3_A 43 LEPIYTSLGKKYKGQKDLVIAKMDATANDITNDQYKVEGFPTIYFAPSGDKK-------NPIKFEGGNRDLEHLSKFIDE 115 (133)
T ss_dssp HHHHHHHHHHHHTTSSSEEEEEECTTTSCCCCSSCCCSSSSEEEEECTTCTT-------SCEECCSSCCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEEecCCcCHHHHhhcCCCcCCEEEEEeCCCcc-------cceEecCCCcCHHHHHHHHHH
Confidence 4566788888876 3467788999999998888898766675554322211 111122223467888888887
Q ss_pred Hhhcc
Q 034085 81 VYRGA 85 (104)
Q Consensus 81 iyrgA 85 (104)
.-...
T Consensus 116 ~~~~~ 120 (133)
T 2dj3_A 116 HATKR 120 (133)
T ss_dssp HSSSC
T ss_pred hcccc
Confidence 65443
No 56
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=88.76 E-value=2.4 Score=27.01 Aligned_cols=67 Identities=19% Similarity=0.354 Sum_probs=44.7
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.++ ..++.||+++-+++.+-|.+.--+|++|| ++..+. + ++.+ . +.+++.+.|+..
T Consensus 56 ~~~~l~~l~~~~~~-v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G-~-~~~~l~~~l~~~ 122 (124)
T 1xfl_A 56 IAPFFADLAKKLPN-VLFLKVDTDELKSVASDWAIQAMPTFMFL-KEGKIL-D-------KVVG-A-KKDELQSTIAKH 122 (124)
T ss_dssp HHHHHHHHHHHCSS-EEEEEEETTTSHHHHHHTTCCSSSEEEEE-ETTEEE-E-------EEES-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-cEEEEEECccCHHHHHHcCCCccCEEEEE-ECCEEE-E-------EEeC-C-CHHHHHHHHHHh
Confidence 44567777777665 66788999999999999999765576555 443322 1 2333 1 567888777653
No 57
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=88.64 E-value=1.5 Score=27.01 Aligned_cols=68 Identities=15% Similarity=0.297 Sum_probs=45.7
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.++-..++.+|+++-+++.+-|.+.--+|+++| ++..+. . ++.+ ..++++|.+.++.
T Consensus 35 ~~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G-~~~~~~l~~~l~~ 102 (112)
T 2voc_A 35 IAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL-KDGEVV-E-------TSVG-FKPKEALQELVNK 102 (112)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEE-ETTEEE-E-------EEES-CCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEE-eCCEEE-E-------EEeC-CCCHHHHHHHHHH
Confidence 45677888888875578899999999999999999765565555 543321 1 1222 2345777776653
No 58
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=88.50 E-value=0.98 Score=27.50 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=46.5
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
+...|.+++++.++ ..++.+|+++-+++.+-|.+.--+|++|| ++..+. + ++.+ .+.+++.+.|+.+-
T Consensus 46 ~~~~l~~~~~~~~~-~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~-~-------~~~g--~~~~~l~~~l~~~~ 113 (118)
T 2vm1_A 46 IAPVFAEYAKKFPG-AIFLKVDVDELKDVAEAYNVEAMPTFLFI-KDGEKV-D-------SVVG--GRKDDIHTKIVALM 113 (118)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSBSEEEEE-ETTEEE-E-------EEES--CCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHCCC-cEEEEEEcccCHHHHHHcCCCcCcEEEEE-eCCeEE-E-------EecC--CCHHHHHHHHHHHh
Confidence 45667778877665 55788999999999999999766676555 543221 1 1223 14678888887765
Q ss_pred hcc
Q 034085 83 RGA 85 (104)
Q Consensus 83 rgA 85 (104)
..+
T Consensus 114 ~~~ 116 (118)
T 2vm1_A 114 GSA 116 (118)
T ss_dssp C--
T ss_pred ccc
Confidence 443
No 59
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.89 E-value=2.9 Score=26.05 Aligned_cols=67 Identities=19% Similarity=0.288 Sum_probs=44.9
Q ss_pred chHHHHHhHHhhhc-ceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKN-FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~-fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.+. =..++.||+++-+++.+-|.+.--+|++|| ++..+ .--.| ..+.++|...++.
T Consensus 40 ~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~--~~~~G--------~~~~~~l~~~l~~ 107 (126)
T 1x5e_A 40 LQPEWESFAEWGEDLEVNIAKVDVTEQPGLSGRFIINALPTIYHC-KDGEF--RRYQG--------PRTKKDFINFISD 107 (126)
T ss_dssp HHHHHHHHHHHHGGGTCEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEE--EECCS--------CCCHHHHHHHHHT
T ss_pred HhHHHHHHHHHhccCCeEEEEEECcCCHHHHHHcCCcccCEEEEE-eCCeE--EEeec--------CCCHHHHHHHHHH
Confidence 45677788887763 356788999999999999999766676666 55433 22223 2345777777664
No 60
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=87.70 E-value=1.8 Score=28.15 Aligned_cols=74 Identities=9% Similarity=0.067 Sum_probs=49.2
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccc--cceEEEEEeCceeEEecCCCCCceEE--eecCChhHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYD--PSTVMFFFRNKHIMIDLGTGNNNKIN--WALKDKQEFIDIV 78 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~d--P~tvMFFfrnkHm~vD~GTgnnnKin--~~~~~kQefIDii 78 (104)
+-.+|.++|++.+.=..++.||+++-|+.-+.|.+.. -+|+++| ++. .|...++. ++ -+++++.+.|
T Consensus 40 ~~p~l~~~A~~~~gk~~f~~vd~d~~~~~a~~~gi~~~~iPtl~i~-~~~-------~g~~~~~~~~g~-~~~~~l~~fi 110 (133)
T 2djk_A 40 LSDKLKPIAEAQRGVINFGTIDAKAFGAHAGNLNLKTDKFPAFAIQ-EVA-------KNQKFPFDQEKE-ITFEAIKAFV 110 (133)
T ss_dssp HHHHHHHHHHSSTTTSEEEEECTTTTGGGTTTTTCCSSSSSEEEEE-CTT-------TCCBCCCCSSSC-CCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCeEEEEEEchHHhHHHHHHcCCCcccCCEEEEE-ecC-------cCcccCCCCccc-cCHHHHHHHH
Confidence 4567888898876557889999999999999999965 5676554 431 12222222 22 2456777777
Q ss_pred HHHhhcc
Q 034085 79 ETVYRGA 85 (104)
Q Consensus 79 e~iyrgA 85 (104)
+.+-.|.
T Consensus 111 ~~~l~Gk 117 (133)
T 2djk_A 111 DDFVAGK 117 (133)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 7766553
No 61
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=87.55 E-value=2.7 Score=26.04 Aligned_cols=66 Identities=11% Similarity=0.219 Sum_probs=42.0
Q ss_pred chHHHHHhHHhhhcceEEEEEeCC-CcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~-eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++.++ ..++.+|.+ +-++..+-|.+.--+|+++| ++..+. + ++.+. +.+++.+.++.
T Consensus 55 ~~~~l~~~~~~~~~-~~~~~vd~~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G~--~~~~l~~~i~~ 121 (124)
T 1faa_A 55 MAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPTFKIL-KENSVV-G-------EVTGA--KYDKLLEAIQA 121 (124)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSSSSEEEEE-ETTEEE-E-------EEESS--CHHHHHHHHHH
T ss_pred HhHHHHHHHHHCCC-CEEEEEecCcchHHHHHHcCCCeeeEEEEE-eCCcEE-E-------EEcCC--CHHHHHHHHHH
Confidence 45567778887766 567889997 68888888998765575554 443321 1 12222 25677777765
No 62
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=87.54 E-value=2.4 Score=26.16 Aligned_cols=65 Identities=12% Similarity=0.275 Sum_probs=41.3
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++. + ..++.||+++-+++.+-|.+.--+|+++| ++..+ ++ ++.+ .+.+++.+.++.
T Consensus 51 ~~~~~~~~~~~~-~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~-~~-------~~~G--~~~~~l~~~l~~ 115 (117)
T 2xc2_A 51 IAPLFKELSEKY-D-AIFVKVDVDKLEETARKYNISAMPTFIAI-KNGEK-VG-------DVVG--ASIAKVEDMIKK 115 (117)
T ss_dssp HHHHHHHHHTTS-S-SEEEEEETTTSHHHHHHTTCCSSSEEEEE-ETTEE-EE-------EEES--SCHHHHHHHHHH
T ss_pred HhHHHHHHHHHc-C-cEEEEEECCccHHHHHHcCCCccceEEEE-eCCcE-EE-------EEeC--CCHHHHHHHHHH
Confidence 445666777665 3 56788999999999999998765575555 44322 11 2333 245677776654
No 63
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=87.50 E-value=1.1 Score=28.25 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=33.4
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEE
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 46 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFF 46 (104)
+...|.+++++. +-..++.||+++-+++.+-|.+..-+|++||
T Consensus 41 ~~~~l~~l~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 83 (118)
T 2f51_A 41 LGQILPSIAEAN-KDVTFIKVDVDKNGNAADAYGVSSIPALFFV 83 (118)
T ss_dssp HHHHHHHHHHHC-TTSEEEEEETTTCHHHHHHTTCCSSSEEEEE
T ss_pred HHHHHHHHHHHC-CCeEEEEEECCCCHHHHHhcCCCCCCEEEEE
Confidence 456677888877 4467789999999999999999776675555
No 64
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=87.44 E-value=0.72 Score=32.65 Aligned_cols=70 Identities=7% Similarity=0.174 Sum_probs=53.9
Q ss_pred chHHHHHhHHhhhcc-eEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~f-a~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
|.-+|.++|++...= +.|+-||+++-|+.-.-|.+..=+|++||=+++-+ .++.++ .+|+++.+.|+..
T Consensus 54 iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G~~v---------~~~~G~-~~k~~l~~~i~~~ 123 (140)
T 2qgv_A 54 NPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNYR---------GVLNGI-HPWAELINLMRGL 123 (140)
T ss_dssp HHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETTEEE---------EEEESC-CCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEE---------EEEecC-CCHHHHHHHHHHH
Confidence 456788888887655 78999999999999999999877788888666654 244443 5678888888765
Q ss_pred h
Q 034085 82 Y 82 (104)
Q Consensus 82 y 82 (104)
-
T Consensus 124 l 124 (140)
T 2qgv_A 124 V 124 (140)
T ss_dssp H
T ss_pred h
Confidence 4
No 65
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=86.68 E-value=0.81 Score=33.32 Aligned_cols=47 Identities=19% Similarity=0.447 Sum_probs=38.6
Q ss_pred chHHHHHhHHhhh-----cceEEEEEeCCCcccccccccccccceEEEEEeC
Q 034085 3 MDEVLSSVAETIK-----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRN 49 (104)
Q Consensus 3 mDe~L~~~a~~v~-----~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrn 49 (104)
|.-++.++|++.. .=..++-||+++-|+.-+.|.+..=+|+++|-.+
T Consensus 62 l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~~I~siPtl~~F~~g 113 (178)
T 3ga4_A 62 FEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQLVKDLKLQNVPHLVVYPPA 113 (178)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHHHHHTTCCSSCEEEEECCC
T ss_pred HHHHHHHHHHHhhhccCCCCEEEEEEECccCHHHHHHcCCCCCCEEEEEcCC
Confidence 4567888888776 4578899999999999999999988898777544
No 66
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=86.57 E-value=1.1 Score=30.60 Aligned_cols=61 Identities=10% Similarity=0.109 Sum_probs=45.2
Q ss_pred eEEEEEeCCCc--ccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhccccC
Q 034085 18 AVIYLVDISEV--PDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKG 88 (104)
Q Consensus 18 a~IY~vDi~eV--pdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iyrgA~kG 88 (104)
+.+..||+++- ++....|.+.-++|++||=+++-+- ++.+.+. +++|...++.+-.++..|
T Consensus 53 ~~l~~vdv~~~~~~~la~~~~V~g~PT~i~f~~G~ev~---------Ri~G~~~-~~~f~~~L~~~l~~~~~~ 115 (116)
T 3dml_A 53 APVQRLQMRDPLPPGLELARPVTFTPTFVLMAGDVESG---------RLEGYPG-EDFFWPMLARLIGQAEPG 115 (116)
T ss_dssp SCEEEEETTSCCCTTCBCSSCCCSSSEEEEEETTEEEE---------EEECCCC-HHHHHHHHHHHHHHHC--
T ss_pred ceEEEEECCCCCchhHHHHCCCCCCCEEEEEECCEEEe---------eecCCCC-HHHHHHHHHHHHhhcCCC
Confidence 56788999874 5888999999999988886665443 6776554 589999999887666544
No 67
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=86.55 E-value=1.5 Score=26.66 Aligned_cols=68 Identities=15% Similarity=0.363 Sum_probs=43.6
Q ss_pred chHHHHHhHHhh--hcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v--~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++. ++ ..++.||+++-|++.+-|.+.--+|++|| ++..+ ++- +.+. +.+++.+.++.
T Consensus 39 ~~~~~~~~~~~~~~~~-~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~-~~~-------~~G~--~~~~l~~~l~~ 106 (112)
T 3d6i_A 39 LKQVFEAISNEPSNSN-VSFLSIDADENSEISELFEISAVPYFIII-HKGTI-LKE-------LSGA--DPKEYVSLLED 106 (112)
T ss_dssp HHHHHHHHHHCGGGTT-SEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEE-EEE-------ECSC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-EEEEEEecccCHHHHHHcCCCcccEEEEE-ECCEE-EEE-------ecCC--CHHHHHHHHHH
Confidence 455677777774 34 67889999999999999999766666555 44332 222 2222 23457777766
Q ss_pred Hh
Q 034085 81 VY 82 (104)
Q Consensus 81 iy 82 (104)
.-
T Consensus 107 ~~ 108 (112)
T 3d6i_A 107 CK 108 (112)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 68
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=86.46 E-value=3.3 Score=26.54 Aligned_cols=70 Identities=14% Similarity=0.227 Sum_probs=46.7
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
+...|.+++++.++-..++.||+++-+++.+-|.+.--+|++||=++..+. +..+ ..+.+++.+.|+..-
T Consensus 56 ~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~G~~~---------~~~G-~~~~~~l~~~l~~~~ 125 (136)
T 2l5l_A 56 VAPILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRSIPSILFIPMEGKPE---------MAQG-AMPKASFKKAIDEFL 125 (136)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSCEEEEECSSSCCE---------EEES-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCCCCEEEEECCCCcEE---------EEeC-CCCHHHHHHHHHHHh
Confidence 456678888888765788999999999999999997666654441322111 1222 235678888877653
No 69
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=86.44 E-value=2 Score=29.74 Aligned_cols=70 Identities=11% Similarity=0.119 Sum_probs=48.8
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
+...+.+++++.+.-..++.||+++-+++.+-|.+.--+|+++| ++..+ +.--+| ..+.+++.+.|+..-
T Consensus 132 ~~p~~~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~-~~~~~G--------~~~~~~l~~~i~~~l 201 (210)
T 3apq_A 132 LAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIF-RSGMA-AVKYNG--------DRSKESLVAFAMQHV 201 (210)
T ss_dssp HHHHHHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEE-CTTSC-CEECCS--------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEEEEECCccHHHHHHcCCCcCCeEEEE-ECCCc-eeEecC--------CCCHHHHHHHHHHhC
Confidence 45677888888877688899999999999999999765576565 54332 222222 235678888877654
No 70
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=86.33 E-value=1.2 Score=29.53 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=35.7
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeE
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIM 53 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~ 53 (104)
.|+.+|.++|++-.+ ..++-||+++.+ +-|.+..=+|+++|-+++-+.
T Consensus 40 ~~~p~l~~la~~~~~-v~f~kvd~d~~~---~~~~v~~~PT~~~fk~G~~v~ 87 (118)
T 3evi_A 40 LVNQHLSLLARKFPE-TKFVKAIVNSCI---QHYHDNCLPTIFVYKNGQIEA 87 (118)
T ss_dssp HHHHHHHHHHHHCTT-SEEEEEEGGGTS---TTCCGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHCCC-CEEEEEEhHHhH---HHCCCCCCCEEEEEECCEEEE
Confidence 477889999998766 567899999864 667776666777777666543
No 71
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.45 E-value=2.2 Score=30.53 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=38.5
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCc
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 50 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnk 50 (104)
.+...+.+++++.+.-..++.||+++-|++.+-|.+.-.+|++||-+++
T Consensus 43 ~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~ 91 (287)
T 3qou_A 43 QLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQ 91 (287)
T ss_dssp TTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEEEEEETTE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeEEEEECCE
Confidence 3556788888888766778899999999999999997766876664444
No 72
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=85.08 E-value=1.4 Score=30.29 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=47.8
Q ss_pred chHHHHHhHHhhhcc---eEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034085 3 MDEVLSSVAETIKNF---AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 79 (104)
Q Consensus 3 mDe~L~~~a~~v~~f---a~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie 79 (104)
+...+.++|++++.- ..++.+|.++-++..+-|.+..-+|++||-+++.+. + .|. .+.+++++.++
T Consensus 165 ~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~~--~-~g~--------~~~~~l~~~l~ 233 (241)
T 3idv_A 165 LAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYD--Y-NGP--------REKYGIVDYMI 233 (241)
T ss_dssp THHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEEE--C-CSC--------CSHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEEEECCeEEE--e-cCC--------CCHHHHHHHHH
Confidence 445677888887653 678889999999999999997766877765555432 2 232 35677777776
Q ss_pred HH
Q 034085 80 TV 81 (104)
Q Consensus 80 ~i 81 (104)
..
T Consensus 234 ~~ 235 (241)
T 3idv_A 234 EQ 235 (241)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 73
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=84.88 E-value=2 Score=27.79 Aligned_cols=69 Identities=13% Similarity=0.286 Sum_probs=43.7
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEE--eCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFF--RNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFf--rnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.+++++. + ..++.||+++-+++.+-|.+.--+|++||. +++-..+. ++.+. +.+++.+.|+.
T Consensus 58 ~~p~l~~l~~~~-~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~~~g~g~~~~-------~~~G~--~~~~l~~~l~~ 126 (133)
T 3cxg_A 58 IKEYFKNQLNYY-Y-VTLVDIDVDIHPKLNDQHNIKALPTFEFYFNLNNEWVLVH-------TVEGA--NQNDIEKAFQK 126 (133)
T ss_dssp THHHHHGGGGTE-E-CEEEEEETTTCHHHHHHTTCCSSSEEEEEEEETTEEEEEE-------EEESC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-C-EEEEEEeccchHHHHHhcCCCCCCEEEEEEecCCCeEEEE-------EEcCC--CHHHHHHHHHH
Confidence 445666666654 2 567889999999999989986655654553 34311222 23333 57888888876
Q ss_pred Hh
Q 034085 81 VY 82 (104)
Q Consensus 81 iy 82 (104)
.-
T Consensus 127 ~l 128 (133)
T 3cxg_A 127 YC 128 (133)
T ss_dssp HS
T ss_pred HH
Confidence 64
No 74
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=84.87 E-value=2.4 Score=27.13 Aligned_cols=68 Identities=15% Similarity=0.288 Sum_probs=40.6
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 79 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie 79 (104)
+++..+.+++++.++-..++.+|+++-++..+-|.+.--+|++|| ++-.+. .++.+. .+++++.+.++
T Consensus 52 ~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~--------~~~~G~-~~~~~l~~~l~ 119 (123)
T 1oaz_A 52 MIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVA--------ATKVGA-LSKGQLKEFLD 119 (123)
T ss_dssp TTHHHHTTC-------CEEEEEETTSCTTTGGGGTCCBSSEEEEE-ESSSEE--------EEEESC-CCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEE-ECCEEE--------EEEeCC-CCHHHHHHHHH
Confidence 355667777777764477899999999999999999766676666 543221 123332 34577777665
No 75
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=84.37 E-value=0.7 Score=28.76 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=47.8
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
++...|.+++++.++ ..++.||+++-+++.+-|.+.--+|+++|-+++.+ . ++.+ .+.+++.+.++..
T Consensus 53 ~~~~~l~~~~~~~~~-v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~--~-------~~~g--~~~~~l~~~l~~~ 120 (130)
T 1wmj_A 53 FIAPVFAEYAKKFPG-AVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEA--D-------KVVG--ARKDDLQNTIVKH 120 (130)
T ss_dssp SSHHHHHHHHHHCTT-BCCEECCTTTSGGGHHHHTCCSSCCCCBCTTTTCC--B-------CCCT--TCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-CEEEEEeccchHHHHHHcCCCccceEEEEeCCeEE--E-------EEeC--CCHHHHHHHHHHH
Confidence 456678888887765 56788999999999999998654565555223322 1 2222 2467888888876
Q ss_pred hhcc
Q 034085 82 YRGA 85 (104)
Q Consensus 82 yrgA 85 (104)
-..+
T Consensus 121 ~~~~ 124 (130)
T 1wmj_A 121 VGAT 124 (130)
T ss_dssp TSSS
T ss_pred Hhcc
Confidence 6544
No 76
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=81.93 E-value=2.7 Score=27.70 Aligned_cols=72 Identities=21% Similarity=0.378 Sum_probs=48.1
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
+...|.+++++.++ ..++.||+++-|++.+-|.+.--+|++||-+++-+. ++.+. +.+++.+.|+..-
T Consensus 50 ~~p~l~~l~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~---------~~~G~--~~~~l~~~i~~~l 117 (153)
T 2wz9_A 50 MNEVMAELAKELPQ-VSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKID---------RLDGA--HAPELTKKVQRHA 117 (153)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEETTTSHHHHHHTTCCSSSEEEEEETTEEEE---------EEESS--CHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCC-eEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEE---------EEeCC--CHHHHHHHHHHHh
Confidence 45567777777655 567889999999999999997666655554343322 23331 4577888888776
Q ss_pred hccc
Q 034085 83 RGAR 86 (104)
Q Consensus 83 rgA~ 86 (104)
..+.
T Consensus 118 ~~~~ 121 (153)
T 2wz9_A 118 SSGS 121 (153)
T ss_dssp CTTS
T ss_pred cccc
Confidence 5543
No 77
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=81.29 E-value=2.7 Score=25.53 Aligned_cols=67 Identities=10% Similarity=0.217 Sum_probs=42.6
Q ss_pred chHHHHHhHHhhhcceEEEEEeCC-CcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDIS-EVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~-eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.++ ..++.+|++ +-+++.+-|.+.--+|+++ |++..+. + ++.+. +.+++.+.|+.+
T Consensus 42 ~~~~l~~~~~~~~~-v~~~~vd~~~~~~~~~~~~~v~~~Pt~~~-~~~G~~~-~-------~~~G~--~~~~l~~~l~~~ 109 (111)
T 2pu9_C 42 MAPKYEKLAEEYLD-VIFLKLDCNQENKTLAKELGIRVVPTFKI-LKENSVV-G-------EVTGA--KYDKLLEAIQAA 109 (111)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEECSSTTHHHHHHHCCSBSSEEEE-ESSSSEE-E-------EEESS--CHHHHHHHHHHH
T ss_pred HCHHHHHHHHHCCC-eEEEEEecCcchHHHHHHcCCCeeeEEEE-EeCCcEE-E-------EEcCC--CHHHHHHHHHHh
Confidence 45567788887777 567889998 7888888899865456544 4442221 1 22332 256777777653
No 78
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=80.56 E-value=9.7 Score=26.18 Aligned_cols=68 Identities=10% Similarity=0.083 Sum_probs=43.5
Q ss_pred HHHHhHHhh--hcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034085 6 VLSSVAETI--KNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 83 (104)
Q Consensus 6 ~L~~~a~~v--~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iyr 83 (104)
.+.++|.+. +.-..+..||.++-|+..+-|.+.--+|+++| ++.. ......+ ..+.+++.+.++....
T Consensus 46 ~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~-~~~~--------~~~~~~G-~~~~~~l~~~~~~~~~ 115 (229)
T 2ywm_A 46 ETVEVIGEAVGQDKIKLDIYSPFTHKEETEKYGVDRVPTIVIE-GDKD--------YGIRYIG-LPAGLEFTTLINGIFH 115 (229)
T ss_dssp HHHHHHHHHHCTTTEEEEEECTTTCHHHHHHTTCCBSSEEEEE-SSSC--------CCEEEES-CCCTTHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCceEEEEecCcccHHHHHHcCCCcCcEEEEE-CCCc--------ccceecC-CccHHHHHHHHHHHHh
Confidence 345555545 55677889999999999999999776676555 3321 1122333 3455777777766553
No 79
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=80.45 E-value=2.2 Score=27.48 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=45.6
Q ss_pred chHHHHHhHHhhhcceEEEEEeC---------CCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDI---------SEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQE 73 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi---------~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQe 73 (104)
+...|.+++++.+ ..++.||+ ++-++..+-|.+.--+|++||-+++-+ + ++.+ ..+++.
T Consensus 49 ~~p~l~~l~~~~~--v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~~~G~~v--~-------~~~G-~~~~~~ 116 (135)
T 3emx_A 49 DWPQLIQASKEVD--VPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFYKEGRIV--D-------KLVG-ATPWSL 116 (135)
T ss_dssp HHHHHHHHHTTCC--SCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEEETTEEE--E-------EEES-CCCHHH
T ss_pred hChhHHHHHHHCC--CEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEEcCCEEE--E-------EEeC-CCCHHH
Confidence 4556777877765 67888999 888888888998643376555433322 1 2222 345678
Q ss_pred HHHHHHHHhhcccc
Q 034085 74 FIDIVETVYRGARK 87 (104)
Q Consensus 74 fIDiie~iyrgA~k 87 (104)
+-.+++....+..+
T Consensus 117 ~~~~i~~~~~~~~~ 130 (135)
T 3emx_A 117 KVEKAREIYGGEGH 130 (135)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHHHHHHhCCCcc
Confidence 88888887766543
No 80
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=79.27 E-value=2.5 Score=26.14 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=44.2
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~i 81 (104)
+...|.+++++.++ ..++.+|+++-++..+-|.+.--+|++||-+++.+. ++.+. .++++|...++..
T Consensus 37 ~~~~l~~~~~~~~~-v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~v~---------~~~G~-~~~~~l~~~~~~~ 104 (110)
T 2l6c_A 37 MEKVLDKFGARAPQ-VAISSVDSEARPELMKELGFERVPTLVFIRDGKVAK---------VFSGI-MNPRELQALYASI 104 (110)
T ss_dssp HHHHHHHHHTTCTT-SCEEEEEGGGCHHHHHHTTCCSSCEEEEEESSSEEE---------EEESC-CCHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCC-cEEEEEcCcCCHHHHHHcCCcccCEEEEEECCEEEE---------EEcCC-CCHHHHHHHHHHH
Confidence 45567777776554 467889999999999999987666766663344332 23332 3567777766643
No 81
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=77.41 E-value=12 Score=25.46 Aligned_cols=69 Identities=12% Similarity=0.105 Sum_probs=44.2
Q ss_pred chHHHHHhHHhhh----cceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHH
Q 034085 3 MDEVLSSVAETIK----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIV 78 (104)
Q Consensus 3 mDe~L~~~a~~v~----~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDii 78 (104)
+...|.+++++.+ .-..++.+|+++-++..+-|.+.--+|+.+| ++.... . ++.+. .+.++|.+.+
T Consensus 152 ~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~-~-------~~~G~-~~~~~l~~~l 221 (226)
T 1a8l_A 152 AVRMAHKFAIENTKAGKGKILGDMVEAIEYPEWADQYNVMAVPKIVIQ-VNGEDR-V-------EFEGA-YPEKMFLEKL 221 (226)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHTTCCSSCEEEEE-ETTEEE-E-------EEESC-CCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccCCcEEEEEEEcccCHHHHHhCCCcccCeEEEE-eCCcee-E-------EEcCC-CCHHHHHHHH
Confidence 3456777888776 3567889999999999898998765565444 443321 1 22222 3456777777
Q ss_pred HHH
Q 034085 79 ETV 81 (104)
Q Consensus 79 e~i 81 (104)
+..
T Consensus 222 ~~~ 224 (226)
T 1a8l_A 222 LSA 224 (226)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 82
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=76.46 E-value=3.3 Score=28.40 Aligned_cols=71 Identities=13% Similarity=0.261 Sum_probs=47.8
Q ss_pred chHHHHHhHHhhhcc---eEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034085 3 MDEVLSSVAETIKNF---AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 79 (104)
Q Consensus 3 mDe~L~~~a~~v~~f---a~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie 79 (104)
+...|.+++++.+.- ..++.||.++-+++.+-|.+.--+|+++|-+++.+ ++ .| ..+.+++...++
T Consensus 50 ~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~~~--~~-~g--------~~~~~~l~~~i~ 118 (241)
T 3idv_A 50 FAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAV--DY-EG--------SRTQEEIVAKVR 118 (241)
T ss_dssp HHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEEEETTEEE--EC-CS--------CSCHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhcCCceEEEEEeccCCHHHHHhcCCCcCCEEEEEcCCCcc--cc-cC--------cccHHHHHHHHh
Confidence 445678888887765 67889999999999999999765576666444433 32 22 234566666666
Q ss_pred HHhhc
Q 034085 80 TVYRG 84 (104)
Q Consensus 80 ~iyrg 84 (104)
..-..
T Consensus 119 ~~~~~ 123 (241)
T 3idv_A 119 EVSQP 123 (241)
T ss_dssp HHHST
T ss_pred hccCc
Confidence 65443
No 83
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=74.15 E-value=9.8 Score=25.95 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=45.1
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCC--cccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~e--Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+...|.++|+. +.-..+..||.++ -|+..+-|.+..-+|+++|-.++.. ..+..+ ..+.+++.+.++.
T Consensus 41 ~~~~~~~la~~-~~~v~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~~~g~~~--------~~~~~G-~~~~~~l~~~l~~ 110 (226)
T 1a8l_A 41 LKQLVQELSEL-TDKLSYEIVDFDTPEGKELAKRYRIDRAPATTITQDGKDF--------GVRYFG-LPAGHEFAAFLED 110 (226)
T ss_dssp HHHHHHHHHTT-CTTEEEEEEETTSHHHHHHHHHTTCCSSSEEEEEETTBCC--------SEEEES-CCCTTHHHHHHHH
T ss_pred HHHHHHHHHhh-CCceEEEEEeCCCcccHHHHHHcCCCcCceEEEEcCCcee--------eEEEec-cCcHHHHHHHHHH
Confidence 45567777754 4456788999998 8998888998776676565333321 122333 2345677777776
Q ss_pred Hhh
Q 034085 81 VYR 83 (104)
Q Consensus 81 iyr 83 (104)
...
T Consensus 111 ~l~ 113 (226)
T 1a8l_A 111 IVD 113 (226)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 84
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=73.41 E-value=6.3 Score=25.54 Aligned_cols=72 Identities=10% Similarity=-0.032 Sum_probs=41.8
Q ss_pred cchHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 2 QMDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
.|...|.+++++..+ ..++.||+++.+ +-|.+.-.+|++||-+++-+.-=.|.-. +...=-+.+++...++.
T Consensus 47 ~~~p~l~~la~~~~~-v~~~~vd~~~~~---~~~~i~~~Pt~~~~~~G~~v~~~~G~~~---~~~~~~~~~~l~~~l~~ 118 (135)
T 2dbc_A 47 VVNQHLSVLARKFPE-TKFVKAIVNSCI---EHYHDNCLPTIFVYKNGQIEGKFIGIIE---CGGINLKLEELEWKLSE 118 (135)
T ss_dssp HHHHHHHHHHHHCSS-EEEEEECCSSSC---SSCCSSCCSEEEEESSSSCSEEEESTTT---TTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-cEEEEEEhhcCc---ccCCCCCCCEEEEEECCEEEEEEEeEEe---eCCCcCCHHHHHHHHHH
Confidence 356678888887654 567889998876 5677776667666644443322222110 00000156777777765
No 85
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=73.25 E-value=7.1 Score=29.21 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=37.0
Q ss_pred HHHHHhHHhhhcc-eEEEEEeCCCcccccccccccccceEEEEEeCc
Q 034085 5 EVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 50 (104)
Q Consensus 5 e~L~~~a~~v~~f-a~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnk 50 (104)
.++.++|+.++.- ..+..||.++-++..+-|.+.--+|+++|-+++
T Consensus 54 ~~~~~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 100 (350)
T 1sji_A 54 IVLELVAQVLEHKDIGFVMVDAKKEAKLAKKLGFDEEGSLYVLKGDR 100 (350)
T ss_dssp HHHHHHHHHGGGSSEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTE
T ss_pred HHHHHHHHHHhhcCcEEEEEeCCCCHHHHHhcCCCccceEEEEECCc
Confidence 4578889888764 788999999999999999998777876764444
No 86
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=73.14 E-value=1.3 Score=29.96 Aligned_cols=69 Identities=4% Similarity=0.168 Sum_probs=45.6
Q ss_pred chHHHHHhHHhhhcceE--EEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKNFAV--IYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~--IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
|.-+|.+++++..+ .. ++-||+++-|+..+-|.+.-=+|++|| ++-.+ + .++.+. .+++++.+.|+.
T Consensus 54 l~P~l~~la~~~~~-v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~f-k~G~~-v-------~~~~G~-~~~~~l~~~i~~ 122 (142)
T 2es7_A 54 NPVMIAELLREFPQ-FDWQVAVADLEQSEAIGDRFNVRRFPATLVF-TDGKL-R-------GALSGI-HPWAELLTLMRS 122 (142)
T ss_dssp HHHHHHHHHHTCTT-SCCEEEEECHHHHHHHHHTTTCCSSSEEEEE-SCC------------CEESC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-cceeEEEEECCCCHHHHHhcCCCcCCeEEEE-eCCEE-E-------EEEeCC-CCHHHHHHHHHH
Confidence 45567788877633 45 789999999999999999765565555 55332 2 234443 356788888876
Q ss_pred Hh
Q 034085 81 VY 82 (104)
Q Consensus 81 iy 82 (104)
..
T Consensus 123 ~l 124 (142)
T 2es7_A 123 IV 124 (142)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 87
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=75.36 E-value=0.72 Score=27.18 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=32.6
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEE
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFF 46 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFF 46 (104)
+...|.+++++.++-..++.+|.++-+++.+-|.+.--+|+++|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~ 80 (106)
T 2yj7_A 37 IAPIIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRSIPTLLLF 80 (106)
Confidence 44566777777765567788999999999999998665565555
No 88
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=72.19 E-value=3.5 Score=26.10 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=33.6
Q ss_pred chHHHHHhHHhhhcceEEEEEeC-------CCcccccccccccccceEEEEEeC
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDI-------SEVPDFNTMYELYDPSTVMFFFRN 49 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi-------~eVpdfn~myeL~dP~tvMFFfrn 49 (104)
+...|.+++++.+.=..++.||+ ++-+++.+-|.+.--+|++|| ++
T Consensus 49 ~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~~i~~~Pt~~~~-~~ 101 (123)
T 1wou_A 49 AEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKY-GT 101 (123)
T ss_dssp HHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEET-TS
T ss_pred hhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHCCCCeeCEEEEE-cC
Confidence 45567778887754567888999 788888888998765675444 44
No 89
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=72.11 E-value=11 Score=22.86 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=38.6
Q ss_pred chHHHHHhHHhhhc-----ceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHH
Q 034085 3 MDEVLSSVAETIKN-----FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI 77 (104)
Q Consensus 3 mDe~L~~~a~~v~~-----fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDi 77 (104)
+...|.+++++.+. -..++.||.++-+ ..+ .+.--+|+++|-+++.+.+. ++.+ ..+.+++.+.
T Consensus 43 ~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~~--~v~~~Pt~~~~~~~~~~~~~-------~~~G-~~~~~~l~~~ 111 (121)
T 2djj_A 43 LAPKYEELGALYAKSEFKDRVVIAKVDATAND-VPD--EIQGFPTIKLYPAGAKGQPV-------TYSG-SRTVEDLIKF 111 (121)
T ss_dssp HHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-CSS--CCSSSSEEEEECSSCTTSCC-------CCCC-CSCHHHHHHH
T ss_pred hhHHHHHHHHHHhhcccCCceEEEEEECcccc-ccc--ccCcCCeEEEEeCcCCCCce-------EecC-CCCHHHHHHH
Confidence 45677888888875 4667889988755 333 66555565555333221111 2222 2356777777
Q ss_pred HHH
Q 034085 78 VET 80 (104)
Q Consensus 78 ie~ 80 (104)
|+.
T Consensus 112 i~~ 114 (121)
T 2djj_A 112 IAE 114 (121)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
No 90
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=72.06 E-value=1.5 Score=29.77 Aligned_cols=81 Identities=6% Similarity=0.045 Sum_probs=44.0
Q ss_pred HHHHHhHHhhhcceEEEEEeCCCccc-cccccccc--ccceEEEE-EeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 5 EVLSSVAETIKNFAVIYLVDISEVPD-FNTMYELY--DPSTVMFF-FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 5 e~L~~~a~~v~~fa~IY~vDi~eVpd-fn~myeL~--dP~tvMFF-frnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
..|.++++..+.-..++.||+++-++ ..+-|.+. --+|++|| -+++-+.-=.|.-....+.+...+.+++++.++.
T Consensus 66 p~l~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~ 145 (164)
T 1sen_A 66 PKFAESTEISELSHNFVMVNLEDEEEPKDEDFSPDGGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKE 145 (164)
T ss_dssp HHHHTCHHHHHHHTTSEEEEEEGGGSCSCGGGCTTCSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCeEEEEEecCCchHHHHHhcccCCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHH
Confidence 34555444332223456788877776 67777763 24554444 2333332223332223333445788999999988
Q ss_pred Hhhcc
Q 034085 81 VYRGA 85 (104)
Q Consensus 81 iyrgA 85 (104)
+....
T Consensus 146 ~l~~~ 150 (164)
T 1sen_A 146 AQERL 150 (164)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 76543
No 91
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=69.59 E-value=5.8 Score=29.57 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=34.8
Q ss_pred hHHHHHhHHhhh--cceEEEEEeCCC-----ccccccccccc--ccceEEEEEeCc
Q 034085 4 DEVLSSVAETIK--NFAVIYLVDISE-----VPDFNTMYELY--DPSTVMFFFRNK 50 (104)
Q Consensus 4 De~L~~~a~~v~--~fa~IY~vDi~e-----Vpdfn~myeL~--dP~tvMFFfrnk 50 (104)
..++.++|+.++ .=..|+-||+++ -|+..+-|.+. .-+|++||-+++
T Consensus 39 ~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~~V~~~~~PTl~~f~~G~ 94 (240)
T 2qc7_A 39 QDEFKRLAENSASSDDLLVAEVGISDYGDKLNMELSEKYKLDKESYPVFYLFRDGD 94 (240)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHTTCCGGGCSEEEEEETTC
T ss_pred hHHHHHHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHcCCCCCCCCEEEEEeCCC
Confidence 346677787775 247789999765 78899999998 788877775444
No 92
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=69.46 E-value=8.2 Score=27.16 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=34.9
Q ss_pred chHHHHHhHHhhhc---ceEEEEEeC--CCcccccccccccccceEEEEE
Q 034085 3 MDEVLSSVAETIKN---FAVIYLVDI--SEVPDFNTMYELYDPSTVMFFF 47 (104)
Q Consensus 3 mDe~L~~~a~~v~~---fa~IY~vDi--~eVpdfn~myeL~dP~tvMFFf 47 (104)
+...+.+++++.+. -..++.||. ++-++..+-|.+.--+|++||-
T Consensus 48 ~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~~Pt~~~~~ 97 (244)
T 3q6o_A 48 FAPTWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPGFPTVRFFX 97 (244)
T ss_dssp HHHHHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCSSSEEEEEC
T ss_pred HHHHHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCccCEEEEEe
Confidence 45577888888876 678899998 6788899999997766755554
No 93
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=68.82 E-value=8 Score=29.50 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=36.4
Q ss_pred HHHHhHHhhhcc-eEEEEEeCCCcccccccccccccceEEEEEeCce
Q 034085 6 VLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 51 (104)
Q Consensus 6 ~L~~~a~~v~~f-a~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkH 51 (104)
.+.++|..++.- ..+..||.++-|+..+-|.+.--+|+++|-+++.
T Consensus 57 ~~e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~~V~~~PTl~~f~~G~~ 103 (367)
T 3us3_A 57 ILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEEDSIYVFKEDEV 103 (367)
T ss_dssp HHHHHHHHHTTTTEEEEEEETTTTHHHHHHHTCCSTTEEEEEETTEE
T ss_pred HHHHHHHHhhcCCceEEEEeCcccHHHHHHcCCCcCceEEEEECCcE
Confidence 466777777653 7789999999999999999988888777655544
No 94
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=68.49 E-value=12 Score=24.59 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=20.5
Q ss_pred eEEeecCChhHHHHHHHHHhhccccCc
Q 034085 63 KINWALKDKQEFIDIVETVYRGARKGR 89 (104)
Q Consensus 63 Kin~~~~~kQefIDiie~iyrgA~kGk 89 (104)
+..+..++.++|++.++.+-+...|+|
T Consensus 146 ~~~G~~~~~~~l~~~l~~~l~~~~~~~ 172 (172)
T 3f9u_A 146 KSYAYDEDISKYINFLQTGLENYRKEK 172 (172)
T ss_dssp CCBCSCCCHHHHHHHHHHHHHHHHHTC
T ss_pred eccCCCCCHHHHHHHHHHHHHHhhccC
Confidence 345667669999999999887766654
No 95
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=66.75 E-value=12 Score=27.03 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=43.0
Q ss_pred chHHHHHhHHhhhcc-----eEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHH
Q 034085 3 MDEVLSSVAETIKNF-----AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI 77 (104)
Q Consensus 3 mDe~L~~~a~~v~~f-----a~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDi 77 (104)
|-++|.++|+.-.++ ..+..+|.++-|+..+-|.+..-+|+.+| ++ .-+..+ ..+++++-+.
T Consensus 45 ~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~gv~~~Pt~~i~-~g-----------~~~~~G-~~~~~~l~~f 111 (243)
T 2hls_A 45 TLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDKFSEFKVERVPTVAFL-GG-----------EVRWTG-IPAGEEIRAL 111 (243)
T ss_dssp HHHHHHHHHHHSCEETTEESEEEEEEETTTTHHHHHHTTCCSSSEEEET-TT-----------TEEEES-CCCTTHHHHH
T ss_pred HHHHHHHHHHhccCCCCCceeEEEEecCCcCHHHHHhcCCCcCCEEEEE-CC-----------ceeEcC-CCcHHHHHHH
Confidence 445666777642222 66788999999998889999876676555 32 222222 2355677777
Q ss_pred HHHHhh
Q 034085 78 VETVYR 83 (104)
Q Consensus 78 ie~iyr 83 (104)
++....
T Consensus 112 v~~~l~ 117 (243)
T 2hls_A 112 VEVIMR 117 (243)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 776654
No 96
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=64.64 E-value=4.5 Score=35.48 Aligned_cols=37 Identities=32% Similarity=0.465 Sum_probs=30.1
Q ss_pred EecCCCCCceEEeecCChhHHHHHHHHHhhccccCceeEEccC
Q 034085 54 IDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGLVIAPK 96 (104)
Q Consensus 54 vD~GTgnnnKin~~~~~kQefIDiie~iyrgA~kGkglV~sP~ 96 (104)
-|.|..|| --+.+|+...+...|+|.||||.+-|-|.
T Consensus 95 ~dagptnn------w~~p~e~~~~l~~~f~G~M~GRTMYViPf 131 (610)
T 2zci_A 95 EDAGPTNN------WAPPQAMKDEMSKHYAGSMKGRTMYVVPF 131 (610)
T ss_dssp TTTCTTSC------CCCHHHHHHHHHHHHTTTTTTSEEEEEEE
T ss_pred hhcCCCcC------ccCHHHHHHHHHHhCCcccCCCEEEEEee
Confidence 35555555 34789999999999999999999998775
No 97
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=64.17 E-value=7.8 Score=29.12 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=45.8
Q ss_pred hHHHHHhHHhhhc---ceEEEEEeCCC-----ccccccccccc--ccceEEEEEeCc-eeEEecC-CCCCceEEeecCCh
Q 034085 4 DEVLSSVAETIKN---FAVIYLVDISE-----VPDFNTMYELY--DPSTVMFFFRNK-HIMIDLG-TGNNNKINWALKDK 71 (104)
Q Consensus 4 De~L~~~a~~v~~---fa~IY~vDi~e-----Vpdfn~myeL~--dP~tvMFFfrnk-Hm~vD~G-TgnnnKin~~~~~k 71 (104)
..++.++|+..+. =..|+-||+++ -|+..+-|.+. .-+|++||- ++ .-..++- +| -.++
T Consensus 50 ~P~~e~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~~V~~~~~PTl~~F~-G~~~~~~~y~~~G--------~~~~ 120 (248)
T 2c0g_A 50 HEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIFLFK-GNADEYVQLPSHV--------DVTL 120 (248)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEEEES-SSSSSEEECCTTS--------CCCH
T ss_pred HHHHHHHHHHHhccCCCeEEEEEECCcccccccHHHHHHhCCCcCCCCeEEEEe-CCcCcceeecccC--------CCCH
Confidence 4567778887743 57889999988 88999999998 778877774 55 2233331 12 2345
Q ss_pred hHHHHHHHHH
Q 034085 72 QEFIDIVETV 81 (104)
Q Consensus 72 QefIDiie~i 81 (104)
+++.+.|+..
T Consensus 121 ~~L~~fi~~~ 130 (248)
T 2c0g_A 121 DNLKAFVSAN 130 (248)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666653
No 98
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=63.51 E-value=12 Score=28.49 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=36.5
Q ss_pred chHHHHHhHHhhh------cceEEEEEeCCCcccccccccccccceEEEEEeCcee
Q 034085 3 MDEVLSSVAETIK------NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 52 (104)
Q Consensus 3 mDe~L~~~a~~v~------~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm 52 (104)
+...+.++|++++ .-..+..||.++-++..+-|.+.--+|++||-+++.+
T Consensus 40 ~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~~v~~~Pt~~~f~~G~~~ 95 (382)
T 2r2j_A 40 LHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYRISKYPTLKLFRNGMMM 95 (382)
T ss_dssp HHHHHHHHHHHHTTCC---CCEEEEEEETTTCHHHHHHTTCCEESEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHhhcCCCCceEEEEEECCccHHHHHhcCCCcCCEEEEEeCCcEe
Confidence 3456778888873 3478899999999999999999776676655434433
No 99
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=60.83 E-value=9 Score=28.66 Aligned_cols=46 Identities=9% Similarity=0.086 Sum_probs=33.8
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCc
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 50 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnk 50 (104)
|..+|.++|.+..+ ..++-||+++ +++.+-|.+.--+|++||-+++
T Consensus 151 l~p~l~~La~~~~~-v~f~kVd~d~-~~l~~~~~I~~~PTll~~~~G~ 196 (245)
T 1a0r_P 151 LNSSLICLAAEYPM-VKFCKIKASN-TGAGDRFSSDVLPTLLVYKGGE 196 (245)
T ss_dssp HHHHHHHHHHHCTT-SEEEEEEHHH-HCCTTSSCTTTCSEEEEEETTE
T ss_pred HHHHHHHHHHHCCC-CEEEEEeCCc-HHHHHHCCCCCCCEEEEEECCE
Confidence 56678888888776 6778899888 8888888887666765554333
No 100
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=59.51 E-value=9.9 Score=29.75 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=37.5
Q ss_pred chHHHHHhHHhhhcc-eEEEEEeCCCcccccccccccccceEEEEEeCc
Q 034085 3 MDEVLSSVAETIKNF-AVIYLVDISEVPDFNTMYELYDPSTVMFFFRNK 50 (104)
Q Consensus 3 mDe~L~~~a~~v~~f-a~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnk 50 (104)
+...+.++|++++.. ..+..||.++-++..+-|.+.--+|++||-+++
T Consensus 49 ~~p~~~~~a~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g~ 97 (504)
T 2b5e_A 49 MAPEYVKAAETLVEKNITLAQIDCTENQDLCMEHNIPGFPSLKIFKNSD 97 (504)
T ss_dssp HHHHHHHHHHHTTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEEETTC
T ss_pred hHHHHHHHHHHhccCCeEEEEEECCCCHHHHHhcCCCcCCEEEEEeCCc
Confidence 445678888888876 888999999999999999997666765654333
No 101
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=59.36 E-value=11 Score=29.13 Aligned_cols=48 Identities=17% Similarity=0.230 Sum_probs=37.8
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCce
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKH 51 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkH 51 (104)
+...+.++|++++.-..++.||.++-++..+-|.+.--+|++|| ++..
T Consensus 39 ~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Ptl~~~-~~g~ 86 (481)
T 3f8u_A 39 LAPEYEAAATRLKGIVPLAKVDCTANTNTCNKYGVSGYPTLKIF-RDGE 86 (481)
T ss_dssp HHHHHHHHHHHTTTTCCEEEEETTTCHHHHHHTTCCEESEEEEE-ETTE
T ss_pred hHHHHHHHHHHhcCceEEEEEECCCCHHHHHhcCCCCCCEEEEE-eCCc
Confidence 45678888998887788899999999999999999654576666 5443
No 102
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=58.86 E-value=11 Score=28.16 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=36.2
Q ss_pred chHHHHHhHHhhhcceEEEEEeCC--CcccccccccccccceEEEEEeCc
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDIS--EVPDFNTMYELYDPSTVMFFFRNK 50 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~--eVpdfn~myeL~dP~tvMFFfrnk 50 (104)
+-..+.+++++++.-..+..||++ +-+++.+-|.+.--+|++||-+++
T Consensus 53 ~~p~~~~la~~~~~~~~~~~v~~d~~~~~~l~~~~~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 53 LSSTFRKAAKRLDGVVQVAAVNCDLNKNKALCAKYDVNGFPTLMVFRPPK 102 (298)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEETTSTTTHHHHHHTTCCBSSEEEEEECCC
T ss_pred HHHHHHHHHHHccCCcEEEEEEccCccCHHHHHhCCCCccceEEEEECCc
Confidence 345678888888776778888877 678899999998767766665554
No 103
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=58.83 E-value=6.8 Score=27.05 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=34.0
Q ss_pred EEEeCC-CcccccccccccccceEEEEE-eCceeEEecCCCCCceEEeecCChhHHHHHHHHHhhcc
Q 034085 21 YLVDIS-EVPDFNTMYELYDPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 85 (104)
Q Consensus 21 Y~vDi~-eVpdfn~myeL~dP~tvMFFf-rnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iyrgA 85 (104)
+.|+++ +-++-..-|+..-.+|++||= +++-+.-=.|...+....|.-++..++++-++..++-.
T Consensus 81 v~V~vD~e~~~~~~~~~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~ 147 (151)
T 3ph9_A 81 IMLNLMHETTDKNLSPDGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLI 147 (151)
T ss_dssp EEEEESSCCSCGGGCTTCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred EEEEecCCchhhHhhcCCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHH
Confidence 444553 334445566666677755553 23332211343334444455566677777777666543
No 104
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=58.72 E-value=4.1 Score=27.16 Aligned_cols=46 Identities=11% Similarity=0.146 Sum_probs=32.7
Q ss_pred hHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCcee
Q 034085 4 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 52 (104)
Q Consensus 4 De~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm 52 (104)
-++|.+++++.. ..+..+||++-|+.-+-|...-| ++++|-.++++
T Consensus 47 ~~~L~~l~~e~~--i~~~~vDId~d~~l~~~ygv~VP-~l~~~~dG~~v 92 (107)
T 2fgx_A 47 IASLRVLQKKSW--FELEVINIDGNEHLTRLYNDRVP-VLFAVNEDKEL 92 (107)
T ss_dssp HHHHHHHHHHSC--CCCEEEETTTCHHHHHHSTTSCS-EEEETTTTEEE
T ss_pred HHHHHHHHHhcC--CeEEEEECCCCHHHHHHhCCCCc-eEEEEECCEEE
Confidence 456777766543 56678999998888777777644 55677677765
No 105
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=56.08 E-value=11 Score=31.25 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=31.8
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCcee
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 52 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm 52 (104)
+...+.++|++++.-..++.||.++-++..+-|.+.--+|++|| ++...
T Consensus 151 ~~p~~~~~a~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~g~~ 199 (780)
T 3apo_A 151 LAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIF-RSGMA 199 (780)
T ss_dssp HHHHHHHHHHHTTTTSEEEEEETTTCSSCC--------CEEEEE-CTTSC
T ss_pred hhHHHHHHHHHhcCceEEEEEeCCCcHHHHHHcCCceeeeEEEE-eCCcE
Confidence 45567888888887788999999999999999999766686555 55443
No 106
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=54.58 E-value=4.3 Score=30.57 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=12.6
Q ss_pred EEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 53 MIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 53 ~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
-+|+||||++ |.++++|++++..
T Consensus 10 ~~~~~~~~~~-----~~~~~~~~~~l~~ 32 (232)
T 3mjd_A 10 GVDLGTENLY-----FQSNAMFIEFALK 32 (232)
T ss_dssp -------CCS-----SCCCCCHHHHHHH
T ss_pred ccccCCCCCC-----CCcHHHHHHHHHH
Confidence 4899999985 7888999887654
No 107
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=54.35 E-value=32 Score=20.93 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=26.7
Q ss_pred hHHHHHhHHhhhcceEEEEEeCCCc------ccccccccccccceEEEEEeCce
Q 034085 4 DEVLSSVAETIKNFAVIYLVDISEV------PDFNTMYELYDPSTVMFFFRNKH 51 (104)
Q Consensus 4 De~L~~~a~~v~~fa~IY~vDi~eV------pdfn~myeL~dP~tvMFFfrnkH 51 (104)
-..|.+++++.+ ..++.+|+++- +++.+-|.+.-.+|+++| ++..
T Consensus 48 ~p~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~-~~G~ 98 (118)
T 1zma_A 48 AGTLSGVVAETK--AHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHI-TDGQ 98 (118)
T ss_dssp HHHHHHHHHHHC--CCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEE-ETTE
T ss_pred HHHHHHHHHhcC--CeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEE-ECCE
Confidence 345666666543 24566766543 466677888766676555 4433
No 108
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=54.03 E-value=35 Score=20.87 Aligned_cols=64 Identities=19% Similarity=0.241 Sum_probs=37.3
Q ss_pred HHhHHhhhcceEEEEEeCC--CcccccccccccccceEEEEE-eC-ceeEEecCCCCCceEEeecCChhHHHHHHHHHh
Q 034085 8 SSVAETIKNFAVIYLVDIS--EVPDFNTMYELYDPSTVMFFF-RN-KHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 82 (104)
Q Consensus 8 ~~~a~~v~~fa~IY~vDi~--eVpdfn~myeL~dP~tvMFFf-rn-kHm~vD~GTgnnnKin~~~~~kQefIDiie~iy 82 (104)
..+++..+.-..++.+|.+ +-+++.+-|.+.--+|+ ++| ++ +-+. ++.+ ..+.++|.+.++..-
T Consensus 53 ~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~-~~~d~~G~~~~---------~~~G-~~~~~~l~~~l~~~~ 120 (130)
T 2kuc_A 53 SLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYPTL-LFINSSGEVVY---------RLVG-AEDAPELLKKVKLGV 120 (130)
T ss_dssp HHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSCEE-EEECTTSCEEE---------EEES-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCCEE-EEECCCCcEEE---------EecC-CCCHHHHHHHHHHHH
Confidence 3444444444566788887 57788888888665564 444 22 2211 1222 235678888887653
No 109
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=53.64 E-value=33 Score=28.45 Aligned_cols=79 Identities=15% Similarity=0.231 Sum_probs=51.3
Q ss_pred chHHHHHhHHhhhc--------ceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCc--eEEee--cCC
Q 034085 3 MDEVLSSVAETIKN--------FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNN--KINWA--LKD 70 (104)
Q Consensus 3 mDe~L~~~a~~v~~--------fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnn--Kin~~--~~~ 70 (104)
|...+.+++++.++ -..++.||+++-|+..+-|.+.-.+|++||-+++-....--.|..+ .+.|. .-+
T Consensus 60 ~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y~V~~~PTlilf~~gg~~~~~~y~G~r~~e~L~fI~k~l~ 139 (470)
T 3qcp_A 60 YASTFSKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKYDINFVPRLFFFYPRDSCRSNEECGTSSLEHVAFENSHLE 139 (470)
T ss_dssp HHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHTTCCSSCEEEEEEESSCCCTTSCCCCCCEEEEECSCTTCC
T ss_pred HHHHHHHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHcCCCccCeEEEEECCCceEEEEeeCCCCHHHHHHHHHhcC
Confidence 44567778877752 3678999999999999999998888877776655433333344332 24343 124
Q ss_pred hhHHHHHHHHH
Q 034085 71 KQEFIDIVETV 81 (104)
Q Consensus 71 kQefIDiie~i 81 (104)
++++...++.+
T Consensus 140 ~~eLe~~~e~L 150 (470)
T 3qcp_A 140 VDELESEVRRL 150 (470)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 56666666644
No 110
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=50.21 E-value=9.4 Score=24.31 Aligned_cols=64 Identities=11% Similarity=0.230 Sum_probs=37.2
Q ss_pred HHhHHhhhcceEEEEEeC----CCcccccccccccccceEEEEE-eCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 8 SSVAETIKNFAVIYLVDI----SEVPDFNTMYELYDPSTVMFFF-RNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 8 ~~~a~~v~~fa~IY~vDi----~eVpdfn~myeL~dP~tvMFFf-rnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
.+++++.++ ..++.||+ ++-+++.+-|.+.--+|+ +|| ++..+. . ..++.+. .++++|.+.++.
T Consensus 57 ~~l~~~~~~-~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~-~~~d~~G~~v-~-----~~~~~G~-~~~~~l~~~l~~ 125 (134)
T 2fwh_A 57 PQVQKALAD-TVLLQANVTANDAQDVALLKHLNVLGLPTI-LFFDGQGQEH-P-----QARVTGF-MDAETFSAHLRD 125 (134)
T ss_dssp HHHHHHTTT-SEEEEEECTTCCHHHHHHHHHTTCCSSSEE-EEECTTSCBC-G-----GGCBCSC-CCHHHHHHHHHH
T ss_pred HHHHHHhcC-cEEEEEeCCCCcchHHHHHHHcCCCCCCEE-EEECCCCCEe-e-----eeeeeec-cCHHHHHHHHHh
Confidence 567777777 56788998 556777788888655564 444 221110 0 0123332 356788777764
No 111
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=48.45 E-value=10 Score=33.26 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=25.3
Q ss_pred CChhHHHHHHHHHhhccccCceeEEccC
Q 034085 69 KDKQEFIDIVETVYRGARKGRGLVIAPK 96 (104)
Q Consensus 69 ~~kQefIDiie~iyrgA~kGkglV~sP~ 96 (104)
-+.+|+-..+...|+|.||||.+-|-|.
T Consensus 104 ~~p~e~~~~l~~~f~G~M~GRTMYViPF 131 (608)
T 2faf_A 104 MSPNAFQAAVQERFPGCMAGRPLYVIPF 131 (608)
T ss_dssp ECHHHHHHHHHHHSTTTTTTSEEEEEEE
T ss_pred CCHHHHHHHHHHhCCcccCCCEEEEEee
Confidence 3779999999999999999999998775
No 112
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=53.32 E-value=3.9 Score=25.51 Aligned_cols=73 Identities=14% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHhHHhhhcceEEEEEeC--CCcccccccccccccceEEEEE-e-CceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034085 8 SSVAETIKNFAVIYLVDI--SEVPDFNTMYELYDPSTVMFFF-R-NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 83 (104)
Q Consensus 8 ~~~a~~v~~fa~IY~vDi--~eVpdfn~myeL~dP~tvMFFf-r-nkHm~vD~GTgnnnKin~~~~~kQefIDiie~iyr 83 (104)
.++++..++-..++.||+ ++-+++.+.|.+.--+|++||= + ++--.+. ++.+. .++++|...++.+-.
T Consensus 45 ~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~Pt~~~~d~~~G~~~~~~-------~~~G~-~~~~~l~~~l~~~~~ 116 (130)
T 2lst_A 45 PGVSRLLEARFVVASVSVDTPEGQELARRYRVPGTPTFVFLVPKAGAWEEVG-------RLFGS-RPRAEFLKELRQVCV 116 (130)
Confidence 555555555455677887 4668888888886555644441 2 2210011 12222 345778888887665
Q ss_pred ccccC
Q 034085 84 GARKG 88 (104)
Q Consensus 84 gA~kG 88 (104)
+...|
T Consensus 117 ~~~~~ 121 (130)
T 2lst_A 117 KGGAC 121 (130)
Confidence 55444
No 113
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=46.35 E-value=39 Score=23.90 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=24.9
Q ss_pred HhHHhhhcceEEEEEeCCCcccccccc--------cccccceEEEE
Q 034085 9 SVAETIKNFAVIYLVDISEVPDFNTMY--------ELYDPSTVMFF 46 (104)
Q Consensus 9 ~~a~~v~~fa~IY~vDi~eVpdfn~my--------eL~dP~tvMFF 46 (104)
++++.+.+-.+++-||+++-|+..+.| .+.-.+|++||
T Consensus 66 ~va~~l~~~fv~ikVD~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l 111 (173)
T 3ira_A 66 EVAGLMNEAFVSIKVDREERPDIDNIYMTVCQIILGRGGWPLNIIM 111 (173)
T ss_dssp HHHHHHHHHCEEEEEETTTCHHHHHHHHHHHHHHHSCCCSSEEEEE
T ss_pred HHHHHHHhcCceeeeCCcccCcHHHHHHHHHHHHcCCCCCcceeeE
Confidence 445555544566789999999988777 56544554444
No 114
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=44.90 E-value=58 Score=26.92 Aligned_cols=72 Identities=13% Similarity=0.080 Sum_probs=49.9
Q ss_pred hHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEee---cCChhHHHHHHHH
Q 034085 4 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWA---LKDKQEFIDIVET 80 (104)
Q Consensus 4 De~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~---~~~kQefIDiie~ 80 (104)
-..|.+++++.+.=..+..+|.++-|+..+.|.+..-+|+++| ++.. .-.++.+. -.+.+++.+.|+.
T Consensus 694 ~p~~~~la~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~--------~~~~~~G~~~g~~~~~~l~~~l~~ 764 (780)
T 3apo_A 694 APEFELLARMIKGKVRAGKVDCQAYPQTCQKAGIKAYPSVKLY-QYER--------AKKSIWEEQINSRDAKTIAALIYG 764 (780)
T ss_dssp HHHHHHHHHHHTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE-EEET--------TTTEEEEEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCceEEEEECCCCHHHHHhcCCCcCCEEEEE-cCCC--------ccccccCcccCCcCHHHHHHHHHH
Confidence 4567778887765577899999999999999999765675555 4311 11234443 3577899999888
Q ss_pred Hhhc
Q 034085 81 VYRG 84 (104)
Q Consensus 81 iyrg 84 (104)
.-..
T Consensus 765 ~l~~ 768 (780)
T 3apo_A 765 KLET 768 (780)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7644
No 115
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=44.72 E-value=34 Score=28.09 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=47.1
Q ss_pred chHHHHHhHHhhhc---ceEEEEEeCC--CcccccccccccccceEEEEEeC----ceeEEecCCCCCceEEeecCChhH
Q 034085 3 MDEVLSSVAETIKN---FAVIYLVDIS--EVPDFNTMYELYDPSTVMFFFRN----KHIMIDLGTGNNNKINWALKDKQE 73 (104)
Q Consensus 3 mDe~L~~~a~~v~~---fa~IY~vDi~--eVpdfn~myeL~dP~tvMFFfrn----kHm~vD~GTgnnnKin~~~~~kQe 73 (104)
+.-.+.+++++.+. -..++.||++ +-++..+-|.+.--+|++||-++ +-+....|. .+.++
T Consensus 48 ~~P~l~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~~V~~~PTl~~f~~g~~~G~~~~~~~g~----------~~~~~ 117 (519)
T 3t58_A 48 FAPTWKELANDVKDWRPALNLAVLDCAEETNSAVCREFNIAGFPTVRFFQAFTKNGSGATLPGAG----------ANVQT 117 (519)
T ss_dssp HHHHHHHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHTTCCSBSEEEEECTTCCSCCCEEECCSS----------CCHHH
T ss_pred HHHHHHHHHHHhhCcCCcEEEEEEECCccccHHHHHHcCCcccCEEEEEcCcccCCCceeEecCC----------CCHHH
Confidence 45578888888887 6888999994 58999999999877776555422 112222221 35677
Q ss_pred HHHHHHHHhh
Q 034085 74 FIDIVETVYR 83 (104)
Q Consensus 74 fIDiie~iyr 83 (104)
+.+.|+....
T Consensus 118 L~~~l~~~l~ 127 (519)
T 3t58_A 118 LRMRLIDALE 127 (519)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 7776666544
No 116
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=44.66 E-value=52 Score=22.43 Aligned_cols=69 Identities=12% Similarity=0.226 Sum_probs=45.5
Q ss_pred hHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHHHhh
Q 034085 4 DEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYR 83 (104)
Q Consensus 4 De~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~iyr 83 (104)
-..|.+++.+.. -..++.+|+++-|+..+-|.+..-+|+++ +++ + .+..+ ..+.+++.+.++....
T Consensus 155 ~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~--~G~-~---------~~~~G-~~~~~~l~~~l~~~~~ 220 (229)
T 2ywm_A 155 AVMAWDFALAND-YITSKVIDASENQDLAEQFQVVGVPKIVI--NKG-V---------AEFVG-AQPENAFLGYIMAVYE 220 (229)
T ss_dssp HHHHHHHHHHCT-TEEEEEEEGGGCHHHHHHTTCCSSSEEEE--GGG-T---------EEEES-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CeEEEEEECCCCHHHHHHcCCcccCEEEE--CCE-E---------EEeeC-CCCHHHHHHHHHHHhh
Confidence 345667777653 46778999999999999999965455333 544 2 12333 2456788888887766
Q ss_pred ccc
Q 034085 84 GAR 86 (104)
Q Consensus 84 gA~ 86 (104)
.++
T Consensus 221 ~~~ 223 (229)
T 2ywm_A 221 KLK 223 (229)
T ss_dssp HHH
T ss_pred hhh
Confidence 543
No 117
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=42.74 E-value=61 Score=20.38 Aligned_cols=71 Identities=21% Similarity=0.246 Sum_probs=42.2
Q ss_pred HHHHhHHhhhcc-eEEEEEeCCC-------------------------cccccccccccccceEEEEEeCceeEEecCCC
Q 034085 6 VLSSVAETIKNF-AVIYLVDISE-------------------------VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTG 59 (104)
Q Consensus 6 ~L~~~a~~v~~f-a~IY~vDi~e-------------------------Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTg 59 (104)
.|.+++++.+.- ..|+.|++++ -..+.+.|.+.--+|+ |++.
T Consensus 50 ~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~-~lid----------- 117 (152)
T 2lrn_A 50 YLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHI-ILVD----------- 117 (152)
T ss_dssp HHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEE-EEEC-----------
T ss_pred HHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeE-EEEC-----------
Confidence 466667666553 6677788775 2445555666433342 4441
Q ss_pred CCceEEeecCChhHHHHHHHHHhhccccC
Q 034085 60 NNNKINWALKDKQEFIDIVETVYRGARKG 88 (104)
Q Consensus 60 nnnKin~~~~~kQefIDiie~iyrgA~kG 88 (104)
.+-++.+..-+.+++.+.++.+-.++..+
T Consensus 118 ~~G~i~~~~~~~~~l~~~l~~l~~~~~~~ 146 (152)
T 2lrn_A 118 PEGKIVAKELRGDDLYNTVEKFVNGAKEG 146 (152)
T ss_dssp TTSEEEEECCCTTHHHHHHHHHHTSSSSC
T ss_pred CCCeEEEeeCCHHHHHHHHHHHHhhcccc
Confidence 12244444446789999999887776543
No 118
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=40.86 E-value=10 Score=33.39 Aligned_cols=27 Identities=22% Similarity=0.507 Sum_probs=24.6
Q ss_pred ChhHHHHHHHHHhhccccCceeEEccC
Q 034085 70 DKQEFIDIVETVYRGARKGRGLVIAPK 96 (104)
Q Consensus 70 ~kQefIDiie~iyrgA~kGkglV~sP~ 96 (104)
+.+|+-..+...|+|.||||.+-|-|.
T Consensus 120 ~p~e~~~~l~~~f~G~M~GRTMYViPF 146 (624)
T 3moe_A 120 SEEDFEKAFNARFPGCMKGRTMYVIPF 146 (624)
T ss_dssp CHHHHHHHHHTTSTTTTTTSEEEEEEE
T ss_pred CHHHHHHHHHhhCcccccCCeEEEEee
Confidence 578999999999999999999998775
No 119
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=40.36 E-value=82 Score=24.19 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=43.3
Q ss_pred chHHHHHhHHhhhc--ceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 3 MDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 3 mDe~L~~~a~~v~~--fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
+-..|.+++++.+. -.+++.+|.++- +..+-|.+.--+|+.||-+++.+...--.| -.+.++|++.++.
T Consensus 388 ~~p~~~~l~~~~~~~~~v~~~~id~~~~-~~~~~~~v~~~Pt~~~~~~~~~~~~~~~~G--------~~~~~~l~~~l~~ 458 (481)
T 3f8u_A 388 LEPKYKELGEKLSKDPNIVIAKMDATAN-DVPSPYEVRGFPTIYFSPANKKLNPKKYEG--------GRELSDFISYLQR 458 (481)
T ss_dssp HHHHHHHHHHHTTTCSSEEEEEEETTSS-CCCTTCCCCSSSEEEEECTTCTTSCEECCS--------CCSHHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCEEEEEEECCch-hhHhhCCCcccCEEEEEeCCCeEeeeEeCC--------CCCHHHHHHHHHH
Confidence 44567888888776 377788998765 565667776655765554333321222222 2466888888776
Q ss_pred H
Q 034085 81 V 81 (104)
Q Consensus 81 i 81 (104)
.
T Consensus 459 ~ 459 (481)
T 3f8u_A 459 E 459 (481)
T ss_dssp H
T ss_pred h
Confidence 4
No 120
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=38.45 E-value=16 Score=24.11 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=14.7
Q ss_pred CChhHHHHHHHHHhhcc
Q 034085 69 KDKQEFIDIVETVYRGA 85 (104)
Q Consensus 69 ~~kQefIDiie~iyrgA 85 (104)
-+.+|||++|+.|+.+.
T Consensus 10 yTe~Efi~lv~~I~~~~ 26 (85)
T 1gxg_A 10 YTETEFKKIIEDIINCE 26 (85)
T ss_dssp SCHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHHHHHHhCC
Confidence 36799999999999884
No 121
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=38.06 E-value=16 Score=24.19 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.8
Q ss_pred CChhHHHHHHHHHhhcc
Q 034085 69 KDKQEFIDIVETVYRGA 85 (104)
Q Consensus 69 ~~kQefIDiie~iyrgA 85 (104)
-+.+|||++|+.|+.+.
T Consensus 10 yTe~Efi~lv~~I~~~~ 26 (86)
T 1fr2_A 10 YTEAEFLQLVTTICNAD 26 (86)
T ss_dssp SBHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHhCC
Confidence 36799999999999884
No 122
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=35.52 E-value=1.2e+02 Score=21.61 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=45.3
Q ss_pred HHHHHhHHhhh----cceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 5 EVLSSVAETIK----NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 5 e~L~~~a~~v~----~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
..|.+++.+.+ .-..+..+|+++-|+..+-|.+.-=+|+ ++ +++.+ ..+ ..+.++|++.++.
T Consensus 158 p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~~V~~vPt~-~i-~G~~~-----------~~G-~~~~~~l~~~l~~ 223 (243)
T 2hls_A 158 LLAHMFAYEAWKQGNPVILSEAVEAYENPDIADKYGVMSVPSI-AI-NGYLV-----------FVG-VPYEEDFLDYVKS 223 (243)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEEETTTCHHHHHHTTCCSSSEE-EE-TTEEE-----------EES-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHcccccCCcEEEEEEECccCHHHHHHcCCeeeCeE-EE-CCEEE-----------EeC-CCCHHHHHHHHHH
Confidence 45666776652 3356789999999988888888654453 33 54421 222 2356889988888
Q ss_pred HhhccccCce
Q 034085 81 VYRGARKGRG 90 (104)
Q Consensus 81 iyrgA~kGkg 90 (104)
.....+.-.|
T Consensus 224 ~~~~~~~~~g 233 (243)
T 2hls_A 224 AAEGRLTVKG 233 (243)
T ss_dssp HHTTCCCCCC
T ss_pred HhhcccccCC
Confidence 7655444333
No 123
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=35.32 E-value=25 Score=20.13 Aligned_cols=60 Identities=17% Similarity=0.242 Sum_probs=35.8
Q ss_pred hHHHHHhHHhhhcceEEEEEeCCCcc----ccccccc--ccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHH
Q 034085 4 DEVLSSVAETIKNFAVIYLVDISEVP----DFNTMYE--LYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI 77 (104)
Q Consensus 4 De~L~~~a~~v~~fa~IY~vDi~eVp----dfn~mye--L~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDi 77 (104)
-.+|.+++++-++ ..+..+|+++-| ++.+.|. ...-+++ |.+++++- | -+++...
T Consensus 18 ~~~l~~l~~~~~~-i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i--~~~g~~i~---~-------------~~~l~~~ 78 (85)
T 1ego_A 18 KDLAEKLSNERDD-FQYQYVDIRAEGITKEDLQQKAGKPVETVPQI--FVDQQHIG---G-------------YTDFAAW 78 (85)
T ss_dssp HHHHHHHHHHHSS-CEEEEECHHHHTCCSHHHHHHTCCCSCCSCEE--EETTEEEE---S-------------SHHHHHH
T ss_pred HHHHHHHHhcCCC-ceEEEEecccChHHHHHHHHHhCCCCceeCeE--EECCEEEE---C-------------HHHHHHH
Confidence 3456666665445 445778886644 6777776 4443453 56777651 1 2577777
Q ss_pred HHHHh
Q 034085 78 VETVY 82 (104)
Q Consensus 78 ie~iy 82 (104)
++.-|
T Consensus 79 ~~~~~ 83 (85)
T 1ego_A 79 VKENL 83 (85)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77665
No 124
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=35.17 E-value=19 Score=24.17 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=15.0
Q ss_pred CChhHHHHHHHHHhhcc
Q 034085 69 KDKQEFIDIVETVYRGA 85 (104)
Q Consensus 69 ~~kQefIDiie~iyrgA 85 (104)
-+.+|||++|+.||.+.
T Consensus 10 YTE~EFl~fv~~i~~~~ 26 (87)
T 1unk_A 10 YTEAEFVQLLKEIEKEN 26 (87)
T ss_dssp SCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCC
Confidence 47899999999999885
No 125
>2wvq_A Small S protein; prion-binding protein, prion, prion regulatory domain, heter incompatibility, prion- binding protein; 2.00A {Podospora anserina} PDB: 2wvn_A 2wvo_A
Probab=34.12 E-value=26 Score=26.08 Aligned_cols=24 Identities=38% Similarity=0.554 Sum_probs=20.0
Q ss_pred CCCCceEEeecCChhHHHHHHHHH
Q 034085 58 TGNNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 58 TgnnnKin~~~~~kQefIDiie~i 81 (104)
++--.|+.||+.||..|-.+|+.|
T Consensus 144 ~s~~~r~~Wai~Dk~~F~~LV~~i 167 (225)
T 2wvq_A 144 TSLAKKTAWALYDGKSLEKIVDQV 167 (225)
T ss_dssp CCSCCCCCEEECSHHHHHHHHHHH
T ss_pred CCccceeeeeeechHHHHHHHHHH
Confidence 334479999999999999998875
No 126
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=33.81 E-value=1.1e+02 Score=20.87 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=39.6
Q ss_pred HhHHhhh-cceEEEEEeCCC--cccccccccccccceEEEEEeCceeEEecCCCCC-ceEEeecCChhHHHHHHHHHhhc
Q 034085 9 SVAETIK-NFAVIYLVDISE--VPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNN-NKINWALKDKQEFIDIVETVYRG 84 (104)
Q Consensus 9 ~~a~~v~-~fa~IY~vDi~e--Vpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnn-nKin~~~~~kQefIDiie~iyrg 84 (104)
.+++.++ +|. ..-+|+++ -..+-+.|.+.-++|+.|+ ..+ ||.. ..+.+ -+.++|++.++.+-..
T Consensus 69 ~V~~~l~~~fv-~v~~d~~~~~~~~l~~~y~v~~~P~~~fl-d~~-------~G~~l~~~~g--~~~~~fl~~L~~~l~~ 137 (153)
T 2dlx_A 69 AVKNIIREHFI-FWQVYHDSEEGQRYIQFYKLGDFPYVSIL-DPR-------TGQKLVEWHQ--LDVSSFLDQVTGFLGE 137 (153)
T ss_dssp HHHHHHHHTEE-EEEEESSSHHHHHHHHHHTCCSSSEEEEE-CTT-------TCCCCEEESS--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCeE-EEEEecCCHhHHHHHHHcCCCCCCEEEEE-eCC-------CCcEeeecCC--CCHHHHHHHHHHHHHh
Confidence 3445553 554 45678865 2346677888778885444 322 2322 22434 5899999999887654
Q ss_pred c
Q 034085 85 A 85 (104)
Q Consensus 85 A 85 (104)
-
T Consensus 138 ~ 138 (153)
T 2dlx_A 138 H 138 (153)
T ss_dssp T
T ss_pred c
Confidence 3
No 127
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=33.22 E-value=99 Score=20.02 Aligned_cols=65 Identities=9% Similarity=0.144 Sum_probs=35.3
Q ss_pred HHhHHhhhcceEEEEEeCCCcc-----------cccccccccccceEEEEE-eCceeEEecCCCCCceEEee-cCChhHH
Q 034085 8 SSVAETIKNFAVIYLVDISEVP-----------DFNTMYELYDPSTVMFFF-RNKHIMIDLGTGNNNKINWA-LKDKQEF 74 (104)
Q Consensus 8 ~~~a~~v~~fa~IY~vDi~eVp-----------dfn~myeL~dP~tvMFFf-rnkHm~vD~GTgnnnKin~~-~~~kQef 74 (104)
.++++....=.+++.+|.++-+ ++.+.|.+.--+|+ +|+ ++-.+.- ++ +. -.+.++|
T Consensus 74 ~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt~-~~~d~~G~~~~--------~~-G~~~~~~~~l 143 (154)
T 2ju5_A 74 SEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYKVTGFPEL-VFIDAEGKQLA--------RM-GFEPGGGAAY 143 (154)
T ss_dssp HHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTTCCSSSEE-EEECTTCCEEE--------EE-CCCTTCHHHH
T ss_pred HHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcCCCCCCEE-EEEcCCCCEEE--------Ee-cCCCCCHHHH
Confidence 3444444222456778988765 56677777654454 444 2222211 12 21 2267888
Q ss_pred HHHHHHHh
Q 034085 75 IDIVETVY 82 (104)
Q Consensus 75 IDiie~iy 82 (104)
++.++.+-
T Consensus 144 ~~~l~~~l 151 (154)
T 2ju5_A 144 VSKVKSAL 151 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887653
No 128
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=32.43 E-value=1e+02 Score=22.61 Aligned_cols=72 Identities=11% Similarity=0.158 Sum_probs=47.3
Q ss_pred HHHHHhHHhhhcceEEEEEeCC--Ccccccccccccc--cceEEEEEeCceeEEecCCCCCceEE--eecCChhHHHHHH
Q 034085 5 EVLSSVAETIKNFAVIYLVDIS--EVPDFNTMYELYD--PSTVMFFFRNKHIMIDLGTGNNNKIN--WALKDKQEFIDIV 78 (104)
Q Consensus 5 e~L~~~a~~v~~fa~IY~vDi~--eVpdfn~myeL~d--P~tvMFFfrnkHm~vD~GTgnnnKin--~~~~~kQefIDii 78 (104)
..+.++|++.+.-..+..+|.+ +-+...+.|.+.. =+|+.+|-.++ +..|.. .-..+.+++.+-+
T Consensus 155 ~~~~~~A~~~~~~i~f~~vd~~~~~~~~~~~~fgi~~~~~P~~~~~~~~~---------~~~ky~~~~~~~~~~~l~~fi 225 (361)
T 3uem_A 155 SNFKTAAESFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEE---------EMTKYKPESEELTAERITEFC 225 (361)
T ss_dssp HHHHHHHGGGTTTCEEEEECTTSGGGHHHHHHTTCCTTTCSEEEEEECC-----------CCEECCSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHccCceEEEEecCChHHHHHHHHHcCCCccCCccEEEEEcCC---------cccccCCCccccCHHHHHHHH
Confidence 5678889888876788889998 6788888898853 34554443222 112222 1135678888888
Q ss_pred HHHhhcc
Q 034085 79 ETVYRGA 85 (104)
Q Consensus 79 e~iyrgA 85 (104)
+....|.
T Consensus 226 ~~~l~g~ 232 (361)
T 3uem_A 226 HRFLEGK 232 (361)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 8887765
No 129
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=31.40 E-value=34 Score=26.95 Aligned_cols=75 Identities=13% Similarity=0.235 Sum_probs=54.7
Q ss_pred HHHHHhHHhhhcceEEEEEeCCCcccccccccc----cccceEEEEEeCceeEEecCCC---------------CCceEE
Q 034085 5 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYEL----YDPSTVMFFFRNKHIMIDLGTG---------------NNNKIN 65 (104)
Q Consensus 5 e~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL----~dP~tvMFFfrnkHm~vD~GTg---------------nnnKin 65 (104)
++..++.+.++++-.++++|.+-++ =++|=+| .+- .++++.+|+-|+.=++.- .++-+-
T Consensus 10 ~~v~el~e~l~~~~~v~vv~~~gl~-v~ql~~LR~~lR~~-~~~~V~KNTL~r~Al~~~~~~~~~le~L~~~L~G~~gl~ 87 (312)
T 3u5i_q 10 EYFAKLREYLEEYKSLFVVGVDNVS-SQQMHEVRKELRGR-AVVLMGKNTMVRRAIRGFLSDLPDFEKLLPFVKGNVGFV 87 (312)
T ss_dssp HHHHHHHHHHHHCSEEEEEECSSCC-HHHHHHHHHHHSSS-CEEEECCHHHHHHHHHTTSSSSCGGGGTGGGCCSSEEEE
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCC-HHHHHHHHHHHhcC-ceEEEeehHHHHHHHhhCcccccChHHHHHhccCCEEEE
Confidence 5778899999999999999998875 3555555 333 468899999999888761 234455
Q ss_pred eecCChhHHHHHHHHH
Q 034085 66 WALKDKQEFIDIVETV 81 (104)
Q Consensus 66 ~~~~~kQefIDiie~i 81 (104)
|.-+|..+..++++.-
T Consensus 88 Ft~~dp~~v~k~l~~~ 103 (312)
T 3u5i_q 88 FTNEPLTEIKNVIVSN 103 (312)
T ss_dssp EESSCHHHHHHHHHTS
T ss_pred EECCCHHHHHHHHHhc
Confidence 5556777777777653
No 130
>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A
Probab=29.89 E-value=26 Score=23.67 Aligned_cols=17 Identities=24% Similarity=0.559 Sum_probs=14.5
Q ss_pred CChhHHHHHHHHHhhcc
Q 034085 69 KDKQEFIDIVETVYRGA 85 (104)
Q Consensus 69 ~~kQefIDiie~iyrgA 85 (104)
-+.+|||++|+.|+.+.
T Consensus 10 yTe~Efi~lv~~I~~~~ 26 (94)
T 3u43_A 10 YTEAEFLEFVKKICRAE 26 (94)
T ss_dssp SBHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 36799999999999864
No 131
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=29.76 E-value=56 Score=23.34 Aligned_cols=47 Identities=9% Similarity=0.127 Sum_probs=32.8
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCcee
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 52 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm 52 (104)
|...|.++|++..+ ..++-+|++ -|+..+-|.+.--+|++|| ++-.+
T Consensus 138 l~p~l~~la~~~~~-v~f~~vd~~-~~~l~~~~~i~~~PTl~~~-~~G~~ 184 (217)
T 2trc_P 138 LNSSLECLAAEYPM-VKFCKIRAS-NTGAGDRFSSDVLPTLLVY-KGGEL 184 (217)
T ss_dssp HHHHHHHHHTTCTT-SEEEEEEHH-HHTCSTTSCGGGCSEEEEE-ETTEE
T ss_pred HHHHHHHHHHHCCC-eEEEEEECC-cHHHHHHCCCCCCCEEEEE-ECCEE
Confidence 56778888887654 466788888 7778888888766676555 55444
No 132
>2k0d_X IMME7, colicin-E7 immunity protein; toxin inhibitor; NMR {Escherichia coli}
Probab=28.51 E-value=27 Score=24.16 Aligned_cols=18 Identities=11% Similarity=0.320 Sum_probs=15.4
Q ss_pred cCChhHHHHHHHHHhhcc
Q 034085 68 LKDKQEFIDIVETVYRGA 85 (104)
Q Consensus 68 ~~~kQefIDiie~iyrgA 85 (104)
=-+++|||++|+.|+...
T Consensus 16 DYTE~EFi~lv~~I~~~~ 33 (101)
T 2k0d_X 16 DYTEAEFVQLLKEIEKEN 33 (101)
T ss_dssp GCBHHHHHHHHHHHHHHH
T ss_pred HhcHHHHHHHHHHHHhcC
Confidence 457899999999999874
No 133
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=27.11 E-value=84 Score=17.24 Aligned_cols=45 Identities=7% Similarity=-0.106 Sum_probs=27.0
Q ss_pred chHHHHHhHHhhhcceEEEEEeCCCcccccccccccccceEEEEEeCcee
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHI 52 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm 52 (104)
+...|.+++++.+.=..++.+| -++..+-|.+.--+|+++ +++.+
T Consensus 17 ~~~~l~~~~~~~~~~~~~~~v~---~~~~~~~~~v~~~Pt~~~--~G~~~ 61 (77)
T 1ilo_A 17 LEKNAREAVKELGIDAEFEKIK---EMDQILEAGLTALPGLAV--DGELK 61 (77)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEC---SHHHHHHHTCSSSSCEEE--TTEEE
T ss_pred HHHHHHHHHHHcCCceEEEEec---CHHHHHHCCCCcCCEEEE--CCEEE
Confidence 4556777777776434455555 456667777765556444 55543
No 134
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=25.74 E-value=70 Score=19.75 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=29.9
Q ss_pred EEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHHH
Q 034085 20 IYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 80 (104)
Q Consensus 20 IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie~ 80 (104)
..-||+++-|+..+-|.+.-| |+++ -+++++- |.+ +++++...++.
T Consensus 29 ~~~vdid~~~~l~~~~g~~vP-tl~~-~~G~~v~------------g~~-~~~~L~~~l~~ 74 (87)
T 1ttz_A 29 FFSVFIDDDAALESAYGLRVP-VLRD-PMGRELD------------WPF-DAPRLRAWLDA 74 (87)
T ss_dssp EEEEECTTCHHHHHHHTTTCS-EEEC-TTCCEEE------------SCC-CHHHHHHHHHT
T ss_pred eEEEECCCCHHHHHHhCCCcC-eEEE-ECCEEEe------------CCC-CHHHHHHHHHH
Confidence 467999999998877877744 5444 4566652 333 56676666654
No 135
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=24.58 E-value=1.1e+02 Score=23.79 Aligned_cols=69 Identities=13% Similarity=0.107 Sum_probs=40.0
Q ss_pred chHHHHHhHHhhh-c--ceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCCCCceEEeecCChhHHHHHHH
Q 034085 3 MDEVLSSVAETIK-N--FAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVE 79 (104)
Q Consensus 3 mDe~L~~~a~~v~-~--fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTgnnnKin~~~~~kQefIDiie 79 (104)
|-..+.+++++.+ . -..+.-+|.++-+.- + |.+.--+|++||-+++-....-.+| ..+.+++++.|+
T Consensus 394 ~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~~v~~~Pt~~~~~~G~~~~~~~~~G--------~~~~~~l~~~i~ 463 (504)
T 2b5e_A 394 LAPTYQELADTYANATSDVLIAKLDHTENDVR-G-VVIEGYPTIVLYPGGKKSESVVYQG--------SRSLDSLFDFIK 463 (504)
T ss_dssp HHHHHHHHHHHHHHHCSSCEEEEEEGGGCCCS-S-CCCSSSSEEEEECCTTSCCCCBCCS--------CCCHHHHHHHHH
T ss_pred HhHHHHHHHHHhhccCCcEEEEEecCCccccc-c-CCceecCeEEEEeCCceecceEecC--------CCCHHHHHHHHH
Confidence 3456677777766 1 356678887654433 3 7786666876664333211222222 236678888777
Q ss_pred HH
Q 034085 80 TV 81 (104)
Q Consensus 80 ~i 81 (104)
..
T Consensus 464 ~~ 465 (504)
T 2b5e_A 464 EN 465 (504)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 136
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=24.28 E-value=42 Score=21.07 Aligned_cols=36 Identities=14% Similarity=0.101 Sum_probs=23.4
Q ss_pred chHHHHHhHHhhhcceEEEEEeCC------CcccccccccccccceEE
Q 034085 3 MDEVLSSVAETIKNFAVIYLVDIS------EVPDFNTMYELYDPSTVM 44 (104)
Q Consensus 3 mDe~L~~~a~~v~~fa~IY~vDi~------eVpdfn~myeL~dP~tvM 44 (104)
|..+|.+++++++ .||++ +-++..+-|.+.-.+|++
T Consensus 30 ~~p~~~~~a~~~~------~v~~~~~~~~~~~~~l~~~~~V~~~PT~~ 71 (106)
T 3kp8_A 30 QKELFGAAFDQVP------YVECSPNGPGTPQAQECTEAGITSYPTWI 71 (106)
T ss_dssp HHHHHGGGGGGSC------EEESCTTCTTSCCCHHHHHTTCCSSSEEE
T ss_pred HHHHHHHHHHhCC------EEEEecccccchhHHHHHHcCCeEeCEEE
Confidence 3445666665543 45555 678888899998777843
No 137
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=24.01 E-value=2.1e+02 Score=20.82 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=29.8
Q ss_pred chHHHHHhHHhhhcc--eEEEEEeCCCcccccccccccccceEEEE
Q 034085 3 MDEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYELYDPSTVMFF 46 (104)
Q Consensus 3 mDe~L~~~a~~v~~f--a~IY~vDi~eVpdfn~myeL~dP~tvMFF 46 (104)
+-..|.+++++.+.- ..+..+|.++-+ .+-|.+.--+|++||
T Consensus 285 ~~p~~~~la~~~~~~~~v~~~~vd~~~~~--~~~~~v~~~Pt~~~~ 328 (361)
T 3uem_A 285 LAPIWDKLGETYKDHENIVIAKMDSTANE--VEAVKVHSFPTLKFF 328 (361)
T ss_dssp HHHHHHHHHHHTTTCSSEEEEEEETTTCB--CSSCCCCSSSEEEEE
T ss_pred HHHHHHHHHHHhccCCcEEEEEEECCccc--hhhcCCcccCeEEEE
Confidence 445788888888764 677888987655 456778776776555
No 138
>3i7t_A RV2704, putative uncharacterized protein; siras, YJGF/YER057C/UK114, homotrimer, quick SOAK NAI deriva unknown function; 1.93A {Mycobacterium tuberculosis}
Probab=23.97 E-value=17 Score=25.50 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=23.5
Q ss_pred chHHHHHhHHhhhcc--eEEEEEeCCCcccccccccc
Q 034085 3 MDEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYEL 37 (104)
Q Consensus 3 mDe~L~~~a~~v~~f--a~IY~vDi~eVpdfn~myeL 37 (104)
++.+|...--.+++. ..+|+.|++..+.+|+.|.=
T Consensus 52 i~aiL~~aG~~l~dVvk~tvyl~d~~df~~~n~v~~~ 88 (149)
T 3i7t_A 52 IEIALGQAGATLADVVRTRIYVTDISRWREVGEVHAQ 88 (149)
T ss_dssp HHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHH
T ss_pred HHHHHHHccCCHhHEEEEEEEECCHHHHHHHHHHHHH
Confidence 344555444444443 67899999988888887764
No 139
>1qu9_A YJGF protein; structural genomics; HET: CSP; 1.20A {Escherichia coli} SCOP: d.79.1.1 PDB: 1j7h_A 2uyk_A 2uyj_A 2uyn_A* 2uyp_A
Probab=23.27 E-value=18 Score=24.03 Aligned_cols=34 Identities=12% Similarity=0.435 Sum_probs=22.8
Q ss_pred hHHHHHhHHhhhcc--eEEEEEeCCCcccccccccc
Q 034085 4 DEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYEL 37 (104)
Q Consensus 4 De~L~~~a~~v~~f--a~IY~vDi~eVpdfn~myeL 37 (104)
+.+|.+.--.+++. ..+|+.|++..+.+|+.|.=
T Consensus 58 ~~~L~~ag~~~~~vvk~~vyl~d~~~~~~~n~~~~~ 93 (128)
T 1qu9_A 58 KAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEA 93 (128)
T ss_dssp HHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHEEEEEEEEcCHHHHHHHHHHHHH
Confidence 44555443334444 56899999888888887764
No 140
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans}
Probab=23.26 E-value=74 Score=21.44 Aligned_cols=26 Identities=15% Similarity=0.359 Sum_probs=20.8
Q ss_pred CcchHHHHHhHHhhhc-----ceEEEEEeCC
Q 034085 1 MQMDEVLSSVAETIKN-----FAVIYLVDIS 26 (104)
Q Consensus 1 m~mDe~L~~~a~~v~~-----fa~IY~vDi~ 26 (104)
|.+||+|..+++.+++ ++.||++|-+
T Consensus 4 ~sldevL~~v~~~l~~~~~~d~~~l~L~~~~ 34 (165)
T 3o5y_A 4 MSLDDIINNMIDKLKLLVHFDRISFLLLANE 34 (165)
T ss_dssp CCHHHHHHHHHHHHHHHSCCSEEEEEEEETT
T ss_pred CCHHHHHHHHHHHHHHhcCcceEEEEEEECC
Confidence 6789999999999885 4678888743
No 141
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein struct initiative; 1.49A {Pseudomonas aeruginosa}
Probab=22.91 E-value=20 Score=23.88 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=23.5
Q ss_pred chHHHHHhHHhhhc--ceEEEEEeCCCcccccccccc
Q 034085 3 MDEVLSSVAETIKN--FAVIYLVDISEVPDFNTMYEL 37 (104)
Q Consensus 3 mDe~L~~~a~~v~~--fa~IY~vDi~eVpdfn~myeL 37 (104)
++.+|.+.--.+++ -..+|+.|++..+.+|+.|.=
T Consensus 46 i~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~~ 82 (122)
T 3k12_A 46 IDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQ 82 (122)
T ss_dssp HHHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHEEEEEEEEcCchHHHHHHHHHHH
Confidence 34455544434444 357899999988888888864
No 142
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens}
Probab=21.82 E-value=78 Score=19.75 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=18.8
Q ss_pred cchHHHHHhHHhhhc-----ceEEEEEeCCC
Q 034085 2 QMDEVLSSVAETIKN-----FAVIYLVDISE 27 (104)
Q Consensus 2 ~mDe~L~~~a~~v~~-----fa~IY~vDi~e 27 (104)
.+|++|..+.+.+.+ .|.||++|-+.
T Consensus 28 dld~ll~~i~~~~~~~l~ad~~~i~l~d~~~ 58 (189)
T 2zmf_A 28 AIDSLLEHIMIYAKNLVNADRCALFQVDHKN 58 (189)
T ss_dssp CHHHHHHHHHHHHHHHHTEEEEEEEEEETTT
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEEecCC
Confidence 367888887777654 47889998654
No 143
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=21.60 E-value=56 Score=22.39 Aligned_cols=49 Identities=27% Similarity=0.525 Sum_probs=28.2
Q ss_pred chHHHHHhHHh--hh---cceEEEEEeCCCcccccccccccccceEEEEEeCceeEEecCCC
Q 034085 3 MDEVLSSVAET--IK---NFAVIYLVDISEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTG 59 (104)
Q Consensus 3 mDe~L~~~a~~--v~---~fa~IY~vDi~eVpdfn~myeL~dP~tvMFFfrnkHm~vD~GTg 59 (104)
+|+...++.++ .+ +|.+..+ + .--|.+-|-.-.+=..|++|+||..|.|
T Consensus 10 LD~~V~~iv~~~~c~c~~~~~v~rv------~--eGkYr~G~k~i~vRil~~~~vMVRVGGG 63 (97)
T 1v5r_A 10 LDDAVKRISEDPPCKCPTKFCVERL------S--QGRYRVGEKILFIRMLHNKHVMVRVGGG 63 (97)
T ss_dssp HHHHHHHHHTSSCCCSSSCCCEEEE------E--TTEEEETTEEEEEEEETTTEEEEEETTE
T ss_pred HHHHHHHHhcCCCccccCCCceEEe------C--CCcEEeCCeEEEEEEecCCEEEEEeCCc
Confidence 56767776654 11 4544332 1 2336666632222234779999999998
No 144
>2guk_A Hypothetical protein PG1857; alpha-beta, alpha-helical bundle, structural genomics, PSI, structure initiative; 1.91A {Porphyromonas gingivalis} SCOP: d.360.1.1
Probab=21.41 E-value=71 Score=22.66 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=18.5
Q ss_pred CCceEEeecCChhHHHHHHHHH
Q 034085 60 NNNKINWALKDKQEFIDIVETV 81 (104)
Q Consensus 60 nnnKin~~~~~kQefIDiie~i 81 (104)
++.|+|-.|.+ .|+|++|..+
T Consensus 61 ~~~kiNlFFG~-~~Ci~vir~~ 81 (120)
T 2guk_A 61 NTERTNLFFGC-KECMEAIRLF 81 (120)
T ss_dssp TSSEEEEEEEC-HHHHHHHHHH
T ss_pred CCCeEEEEeCC-HHHHHHHHHH
Confidence 68899999986 8999999988
No 145
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=21.19 E-value=42 Score=23.92 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=14.7
Q ss_pred HHhhccccCceeEEccCC
Q 034085 80 TVYRGARKGRGLVIAPKD 97 (104)
Q Consensus 80 ~iyrgA~kGkglV~sP~d 97 (104)
.+|.+.+-|.|+.++|.+
T Consensus 27 ~vf~~~~~G~Giai~p~~ 44 (154)
T 2gpr_A 27 EVFKERMLGDGFAINPKS 44 (154)
T ss_dssp HHHHTTSSCEEEEEEESS
T ss_pred ccccccceeCeEEEEeCC
Confidence 367888889999988876
No 146
>3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein struct initiative; 2.50A {Salmonella typhimurium}
Probab=20.85 E-value=22 Score=23.82 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=22.8
Q ss_pred hHHHHHhHHhhhcc--eEEEEEeCCCcccccccccc
Q 034085 4 DEVLSSVAETIKNF--AVIYLVDISEVPDFNTMYEL 37 (104)
Q Consensus 4 De~L~~~a~~v~~f--a~IY~vDi~eVpdfn~myeL 37 (104)
+.+|.+.--.+++. ..+|+.|++..+.+|+.|.=
T Consensus 49 ~~~L~~aG~~~~~Vvk~tvyl~d~~df~~~n~v~~~ 84 (124)
T 3gtz_A 49 DAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWDA 84 (124)
T ss_dssp HHHHHHTTCCGGGEEEEEEEESCGGGHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHH
Confidence 44454443334442 57899999998888888864
No 147
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=20.46 E-value=1.5e+02 Score=17.86 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=18.4
Q ss_pred hHHHHHhHHhhhcc-eEEEEEeCCCccc
Q 034085 4 DEVLSSVAETIKNF-AVIYLVDISEVPD 30 (104)
Q Consensus 4 De~L~~~a~~v~~f-a~IY~vDi~eVpd 30 (104)
-..|.+++++.+.- ..++.|+.++-++
T Consensus 50 ~~~l~~l~~~~~~~~~~~v~v~~d~~~~ 77 (148)
T 3hcz_A 50 TPKLYDWWLKNRAKGIQVYAANIERKDE 77 (148)
T ss_dssp HHHHHHHHHHHGGGTEEEEEEECCSSSH
T ss_pred HHHHHHHHHHhccCCEEEEEEEecCCHH
Confidence 34567777777664 6677888876665
No 148
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=20.15 E-value=72 Score=21.92 Aligned_cols=43 Identities=9% Similarity=-0.017 Sum_probs=28.0
Q ss_pred HHHHHhHHhhhcceEEEEEeCCCccccccccc---ccccceEEEEEeC
Q 034085 5 EVLSSVAETIKNFAVIYLVDISEVPDFNTMYE---LYDPSTVMFFFRN 49 (104)
Q Consensus 5 e~L~~~a~~v~~fa~IY~vDi~eVpdfn~mye---L~dP~tvMFFfrn 49 (104)
-+|.+++++-++ ..+..||+++-|+..+-|. +.--+|+ +||++
T Consensus 74 P~l~~l~~~~~~-v~~~~v~~d~~~~~~~~~~~~~v~~iPt~-i~~~~ 119 (167)
T 1z6n_A 74 AALDFAQRLQPN-IELAIISKGRAEDDLRQRLALERIAIPLV-LVLDE 119 (167)
T ss_dssp HHHHHHHHHCTT-EEEEEECHHHHHHHTTTTTTCSSCCSSEE-EEECT
T ss_pred HHHHHHHHHCCC-cEEEEEECCCCHHHHHHHHHcCCCCcCeE-EEECC
Confidence 467777776655 5678899998888766665 5433443 44444
Done!