BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034089
MASITACLPSPLLVQGRQKLSLFITLPKLPLSPLNEKQNCLAIVAKASGESSESSTSLTV
FKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATSYV

High Scoring Gene Products

Symbol, full name Information P value
AT1G52220 protein from Arabidopsis thaliana 7.7e-16

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034089
        (104 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2037435 - symbol:AT1G52220 "AT1G52220" species...   198  7.7e-16   1


>TAIR|locus:2037435 [details] [associations]
            symbol:AT1G52220 "AT1G52220" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM;IDA] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA]
            [GO:0009657 "plastid organization" evidence=RCA] [GO:0010103
            "stomatal complex morphogenesis" evidence=RCA] [GO:0010207
            "photosystem II assembly" evidence=RCA] [GO:0019684
            "photosynthesis, light reaction" evidence=RCA] [GO:0035304
            "regulation of protein dephosphorylation" evidence=RCA] [GO:0043085
            "positive regulation of catalytic activity" evidence=RCA]
            EMBL:CP002684 GO:GO:0009535 UniGene:At.16830 EMBL:AC022354
            InterPro:IPR025564 Pfam:PF14159 EMBL:AF410269 EMBL:AY097365
            IPI:IPI00529609 PIR:B96562 RefSeq:NP_564603.1 IntAct:Q9M812
            STRING:Q9M812 PRIDE:Q9M812 EnsemblPlants:AT1G52220.1 GeneID:841652
            KEGG:ath:AT1G52220 TAIR:At1g52220 InParanoid:Q9M812 OMA:AVWASAN
            PhylomeDB:Q9M812 ProtClustDB:CLSN2688710 Genevestigator:Q9M812
            Uniprot:Q9M812
        Length = 156

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 51/106 (48%), Positives = 61/106 (57%)

Query:     1 MASITACLPSPLLVQGR-------QKLSLFITLPKLPLSPLNEKQN--CLAIXXXXXXXX 51
             MASI+A LPSPLL+  R       QKL   +T     LSPL+  +N   +++        
Sbjct:     1 MASISATLPSPLLLTQRKSNLTSIQKLPFSLTRGTNDLSPLSLTRNPSSISLMVKASGES 60

Query:    52 XXXXXXXXXXXXVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
                         +QNVWD S EDRLGLIGLGFAGIVALWAS+NLIT
Sbjct:    61 SDSSTDLDVVSTIQNVWDKS-EDRLGLIGLGFAGIVALWASLNLIT 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      104        84   0.00091  102 3  11 22  0.42    29
                                                     29  0.45    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  536 (57 KB)
  Total size of DFA:  102 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  7.41u 0.17s 7.58t   Elapsed:  00:00:00
  Total cpu time:  7.41u 0.17s 7.58t   Elapsed:  00:00:00
  Start:  Fri May 10 14:16:05 2013   End:  Fri May 10 14:16:05 2013

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