BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034089
         (104 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8LCA1|TMP14_ARATH Thylakoid membrane phosphoprotein 14 kDa, chloroplastic
           OS=Arabidopsis thaliana GN=TMP14 PE=1 SV=2
          Length = 174

 Score = 34.3 bits (77), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 60  VFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLIT 97
           + K+ Q  W+   +D+  +  L FAG+VALW S  +I+
Sbjct: 86  IVKTAQEAWEKV-DDKYAIGSLAFAGVVALWGSAGMIS 122


>sp|Q9KW13|RPOC_SHEVI DNA-directed RNA polymerase subunit beta' OS=Shewanella violacea
            GN=rpoC PE=3 SV=1
          Length = 1409

 Score = 30.0 bits (66), Expect = 4.3,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 27/35 (77%), Gaps = 1/35 (2%)

Query: 35   NEKQNCLAIVAKASGESSESSTSLTVFKSVQNVWD 69
            ++K+N  A+ AKASG++SE +T++T  ++ +N+ D
Sbjct: 1367 HQKRNA-ALAAKASGKTSEQATTITASEAERNLAD 1400


>sp|Q02896|YDC1_YEAST Alkaline ceramidase YDC1 OS=Saccharomyces cerevisiae (strain ATCC
          204508 / S288c) GN=YDC1 PE=1 SV=1
          Length = 317

 Score = 29.6 bits (65), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 44 VAKASGESSESSTSLTVFKSVQNVWDNSSEDRLGLIGLGFA 84
          +A+ S   + S   +T F S  + W N  E R  LIG+GF+
Sbjct: 36 IAEWSNTITNSIFLMTAFYSTYSAWRNKLETRYILIGMGFS 76


>sp|Q9ZFG9|ALGE7_AZOVI Poly(beta-D-mannuronate) C5 epimerase 7 OS=Azotobacter vinelandii
           GN=algE7 PE=1 SV=1
          Length = 856

 Score = 29.3 bits (64), Expect = 7.4,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 16/62 (25%)

Query: 47  ASGESSESSTSLTVFKSVQNVWDNSS---------EDRLGLIGLGFAGI-------VALW 90
           + GE ++     +V  S QN  DN S         EDR+ L GLGF+G+       + LW
Sbjct: 591 SGGEGADIFRFTSVADSYQNSGDNFSDLILDFDPGEDRIDLSGLGFSGLGDGHNGTLLLW 650

Query: 91  AS 92
            S
Sbjct: 651 TS 652


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.129    0.363 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,933,910
Number of Sequences: 539616
Number of extensions: 1005402
Number of successful extensions: 2645
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2640
Number of HSP's gapped (non-prelim): 10
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)