Query 034089
Match_columns 104
No_of_seqs 78 out of 80
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 09:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034089.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034089hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02777 photosystem I P subun 99.9 3.2E-24 6.9E-29 162.4 8.6 95 7-102 6-120 (167)
2 PF14159 CAAD: CAAD domains of 98.0 5.8E-06 1.3E-10 56.9 3.3 41 61-102 1-45 (90)
3 PF04418 DUF543: Domain of unk 77.4 2.4 5.1E-05 28.6 2.4 30 63-92 17-48 (75)
4 TIGR00766 ribonuclease, putati 69.1 7.5 0.00016 29.8 3.8 43 58-102 64-106 (263)
5 PF08606 Prp19: Prp19/Pso4-lik 65.2 5.8 0.00012 26.8 2.1 16 56-71 5-20 (70)
6 TIGR00765 yihY_not_rbn YihY fa 45.7 22 0.00047 27.4 2.8 22 81-102 85-106 (259)
7 PF12911 OppC_N: N-terminal TM 39.8 47 0.001 19.6 3.1 27 63-89 4-30 (56)
8 COG1295 Rbn Ribonuclease BN fa 35.9 44 0.00094 26.8 3.2 28 73-101 96-123 (303)
9 PF00756 Esterase: Putative es 27.0 21 0.00046 26.0 0.0 36 57-93 99-134 (251)
10 PF08592 DUF1772: Domain of un 26.5 1.4E+02 0.003 20.1 4.0 32 58-91 107-138 (139)
11 TIGR02427 protocat_pcaD 3-oxoa 24.6 59 0.0013 22.0 1.9 38 57-94 62-99 (251)
12 KOG0289 mRNA splicing factor [ 24.4 52 0.0011 29.4 1.9 16 57-72 69-84 (506)
13 TIGR02240 PHA_depoly_arom poly 24.3 58 0.0012 24.1 1.9 37 57-94 74-111 (276)
14 PF12697 Abhydrolase_6: Alpha/ 22.0 53 0.0012 21.7 1.2 38 57-94 49-86 (228)
15 PRK08105 flavodoxin; Provision 21.0 28 0.00061 24.9 -0.3 35 49-84 60-95 (149)
16 PF10031 DUF2273: Small integr 20.9 1.4E+02 0.0031 18.5 2.9 29 66-97 2-31 (51)
No 1
>PLN02777 photosystem I P subunit (PSI-P)
Probab=99.91 E-value=3.2e-24 Score=162.44 Aligned_cols=95 Identities=31% Similarity=0.514 Sum_probs=79.9
Q ss_pred cCCCcccccccccccccccCCC------CCCCCch-----------hhhhhhhHhHhhcCCCCCCc--c-hhhhHHHHHH
Q 034089 7 CLPSPLLVQGRQKLSLFITLPK------LPLSPLN-----------EKQNCLAIVAKASGESSESS--T-SLTVFKSVQN 66 (104)
Q Consensus 7 ~~~~~~L~~~r~p~s~~~~~p~------~p~~~l~-----------~r~~~~~v~a~At~e~~~s~--~-~~eivk~lq~ 66 (104)
+..++++++++.|++.+...|+ +|.|+++ ||+..|+|++||++|++++. + .+|++|++||
T Consensus 6 ~~~~~~~~~~~~~~~~~a~~~~~~~lp~lppp~~~~~~~~~~~~~~c~~~~r~vv~~a~ge~s~~~~~~~~~ei~k~~~e 85 (167)
T PLN02777 6 ISSSSTLIDSKAPRSSAAASPQCVSLPTLPPPPVQSHNRPAKATAYCRKIARNVVTMATGEAPAEVETTELPEIVKTVQE 85 (167)
T ss_pred cccccccccCCCCCcCcccCCccccCCCCCCCCcccCCCcchhHHHHHHhHHHHHHHhccCCCcccccccHHHHHHHHHH
Confidence 4556789999888876665555 4444433 99999999999999987653 2 3599999999
Q ss_pred HhhhcccchhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 034089 67 VWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATS 102 (104)
Q Consensus 67 ~Wd~~~EdK~av~~~g~aaivalW~s~~vv~AId~~ 102 (104)
+||+ +||||+|++|+++|||++|++.++|+|||+.
T Consensus 86 ~Wd~-~EdK~av~~l~~aaiVal~v~~~VL~AId~l 120 (167)
T PLN02777 86 AWDK-VEDKYAVSSLAFAGVVALWGSAGMISAIDRL 120 (167)
T ss_pred HHhh-hcchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999 8999999999999999999999999999985
No 2
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=98.00 E-value=5.8e-06 Score=56.89 Aligned_cols=41 Identities=22% Similarity=0.379 Sum_probs=37.8
Q ss_pred HHHHHHHhhhcccchhHHHHHHHHH----HHHHHHhhhhhhhhccc
Q 034089 61 FKSVQNVWDNSSEDRLGLIGLGFAG----IVALWASVNLITVSATS 102 (104)
Q Consensus 61 vk~lq~~Wd~~~EdK~av~~~g~aa----ivalW~s~~vv~AId~~ 102 (104)
++++++.|++ .+|||....+++|+ ++++|.+.++++|||+.
T Consensus 1 l~~~~~~~~~-~~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~i 45 (90)
T PF14159_consen 1 LSKLPEYWGE-FFDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSI 45 (90)
T ss_pred CchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3689999999 89999999999988 99999999999999984
No 3
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=77.40 E-value=2.4 Score=28.56 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=23.2
Q ss_pred HHHHHhhhcccc--hhHHHHHHHHHHHHHHHh
Q 034089 63 SVQNVWDNSSED--RLGLIGLGFAGIVALWAS 92 (104)
Q Consensus 63 ~lq~~Wd~~~Ed--K~av~~~g~aaivalW~s 92 (104)
.+.+|||+..+| +.+..++++|+++.|++.
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l~f 48 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVVFSLLFF 48 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 788999997777 456677778888887753
No 4
>TIGR00766 ribonuclease, putative. This family shows similarity to ribonuclease BN
Probab=69.11 E-value=7.5 Score=29.83 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=28.1
Q ss_pred hhhHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhhhhhccc
Q 034089 58 LTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVNLITVSATS 102 (104)
Q Consensus 58 ~eivk~lq~~Wd~~~EdK~av~~~g~aaivalW~s~~vv~AId~~ 102 (104)
+|+.+.+++..++..++...+ .++|-++.+|.+++.+++|++.
T Consensus 64 ~~~~~~v~~~l~~~~~~~~~l--~~ig~~~ll~tas~~~~~l~~a 106 (263)
T TIGR00766 64 PALAQTLKNTMNTAVDARTTV--GLIGLATALYSGLNWMGNLREA 106 (263)
T ss_pred HHHHHHHHHHHHHHHhcccHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666633443333 4466689999999998887653
No 5
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=65.16 E-value=5.8 Score=26.76 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=13.9
Q ss_pred chhhhHHHHHHHhhhc
Q 034089 56 TSLTVFKSVQNVWDNS 71 (104)
Q Consensus 56 ~~~eivk~lq~~Wd~~ 71 (104)
+.+.+++.+|+.||.+
T Consensus 5 SIP~lL~~lQnEWDa~ 20 (70)
T PF08606_consen 5 SIPSLLSTLQNEWDAL 20 (70)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 3679999999999983
No 6
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=45.73 E-value=22 Score=27.38 Aligned_cols=22 Identities=9% Similarity=0.064 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhhhhhhhhccc
Q 034089 81 LGFAGIVALWASVNLITVSATS 102 (104)
Q Consensus 81 ~g~aaivalW~s~~vv~AId~~ 102 (104)
.++|.+.++|.+++.++++.+.
T Consensus 85 ~~ig~~~~lwsas~~~~~l~~~ 106 (259)
T TIGR00765 85 TAVGIVSLIVTALLLINNIDST 106 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577799999999999887653
No 7
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=39.85 E-value=47 Score=19.64 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=20.3
Q ss_pred HHHHHhhhcccchhHHHHHHHHHHHHH
Q 034089 63 SVQNVWDNSSEDRLGLIGLGFAGIVAL 89 (104)
Q Consensus 63 ~lq~~Wd~~~EdK~av~~~g~aaival 89 (104)
..|+.|.+...||.+++++.+-.++.+
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl 30 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVL 30 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 467889888899999988776554433
No 8
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=35.87 E-value=44 Score=26.78 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=20.5
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 034089 73 EDRLGLIGLGFAGIVALWASVNLITVSAT 101 (104)
Q Consensus 73 EdK~av~~~g~aaivalW~s~~vv~AId~ 101 (104)
.++-+.++.+ +.++++|++++.++++++
T Consensus 96 ~~~~~~~~~~-g~~~~lwtas~~~~al~~ 123 (303)
T COG1295 96 SQSRGSLLSL-GLVVALWTASNGMSALRD 123 (303)
T ss_pred cCCCCCcHHH-HHHHHHHHHHHHHHHHHH
Confidence 3444444443 889999999999998875
No 9
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=26.97 E-value=21 Score=25.97 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=30.6
Q ss_pred hhhhHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhh
Q 034089 57 SLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASV 93 (104)
Q Consensus 57 ~~eivk~lq~~Wd~~~EdK~av~~~g~aaivalW~s~ 93 (104)
.+||+..|++++-. ..++-+|.|...||..||++..
T Consensus 99 ~~el~p~i~~~~~~-~~~~~~i~G~S~GG~~Al~~~l 134 (251)
T PF00756_consen 99 TEELIPYIEANYRT-DPDRRAIAGHSMGGYGALYLAL 134 (251)
T ss_dssp HTHHHHHHHHHSSE-EECCEEEEEETHHHHHHHHHHH
T ss_pred hccchhHHHHhccc-ccceeEEeccCCCcHHHHHHHH
Confidence 34999999999987 5665899999999999999764
No 10
>PF08592 DUF1772: Domain of unknown function (DUF1772); InterPro: IPR013901 This entry represents proteins of unknown function.
Probab=26.53 E-value=1.4e+02 Score=20.10 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=20.8
Q ss_pred hhhHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 034089 58 LTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWA 91 (104)
Q Consensus 58 ~eivk~lq~~Wd~~~EdK~av~~~g~aaivalW~ 91 (104)
.+=++++.++|++ =|..=...-++|.++++|+
T Consensus 107 ~~~~~~l~~~W~~--~n~vR~~~~~~a~~~~~~A 138 (139)
T PF08592_consen 107 ADWVRALLDRWGR--LNLVRTVLSLVAFLLLLIA 138 (139)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3447899999999 3444444446666666664
No 11
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=24.60 E-value=59 Score=22.04 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhh
Q 034089 57 SLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVN 94 (104)
Q Consensus 57 ~~eivk~lq~~Wd~~~EdK~av~~~g~aaivalW~s~~ 94 (104)
-.++.+++.+..+..-.+|..++|...||.+++.++..
T Consensus 62 ~~~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~ 99 (251)
T TIGR02427 62 IEDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAAR 99 (251)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCchHHHHHHHHHH
Confidence 45777888888887324689999999999999977654
No 12
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=24.38 E-value=52 Score=29.41 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.5
Q ss_pred hhhhHHHHHHHhhhcc
Q 034089 57 SLTVFKSVQNVWDNSS 72 (104)
Q Consensus 57 ~~eivk~lq~~Wd~~~ 72 (104)
...+++.+|+.||.+.
T Consensus 69 IPalL~~lQdEWDavM 84 (506)
T KOG0289|consen 69 IPALLKTLQDEWDAVM 84 (506)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5689999999999843
No 13
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=24.31 E-value=58 Score=24.12 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHhhhccc-chhHHHHHHHHHHHHHHHhhh
Q 034089 57 SLTVFKSVQNVWDNSSE-DRLGLIGLGFAGIVALWASVN 94 (104)
Q Consensus 57 ~~eivk~lq~~Wd~~~E-dK~av~~~g~aaivalW~s~~ 94 (104)
-+++.+++.+-.+. .+ +|+.|+|...||.+++.++.-
T Consensus 74 ~~~~~~~~~~~i~~-l~~~~~~LvG~S~GG~va~~~a~~ 111 (276)
T TIGR02240 74 FPGLAKLAARMLDY-LDYGQVNAIGVSWGGALAQQFAHD 111 (276)
T ss_pred HHHHHHHHHHHHHH-hCcCceEEEEECHHHHHHHHHHHH
Confidence 46888888888888 55 789999999999999988753
No 14
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=21.96 E-value=53 Score=21.73 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=30.3
Q ss_pred hhhhHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhh
Q 034089 57 SLTVFKSVQNVWDNSSEDRLGLIGLGFAGIVALWASVN 94 (104)
Q Consensus 57 ~~eivk~lq~~Wd~~~EdK~av~~~g~aaivalW~s~~ 94 (104)
-++.++++.+--++.-.+|..+++...||.+++.+...
T Consensus 49 ~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~ 86 (228)
T PF12697_consen 49 IEDYAEDLAELLDALGIKKVILVGHSMGGMIALRLAAR 86 (228)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcccccccccccccccccccccccccccc
Confidence 45777888888888333789999999999999988753
No 15
>PRK08105 flavodoxin; Provisional
Probab=20.99 E-value=28 Score=24.93 Aligned_cols=35 Identities=20% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCCCCCcchhhhHHHHHHHhhhcccc-hhHHHHHHHH
Q 034089 49 GESSESSTSLTVFKSVQNVWDNSSED-RLGLIGLGFA 84 (104)
Q Consensus 49 ~e~~~s~~~~eivk~lq~~Wd~~~Ed-K~av~~~g~a 84 (104)
++..-+.+..+++..+++.... .++ ||+|+++|--
T Consensus 60 G~Ge~p~~~~~f~~~l~~~~~~-l~~~~~avfGlGds 95 (149)
T PRK08105 60 GQGDLPDSIVPLFQALKDTAGY-QPNLRYGVIALGDS 95 (149)
T ss_pred CCCCCChhHHHHHHHHHhcCcc-cCCCEEEEEeeecC
Confidence 3433333356888888876555 455 7999988853
No 16
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.86 E-value=1.4e+02 Score=18.47 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=18.1
Q ss_pred HHhhhcccchhHHHHHHHHHHHHH-HHhhhhhh
Q 034089 66 NVWDNSSEDRLGLIGLGFAGIVAL-WASVNLIT 97 (104)
Q Consensus 66 ~~Wd~~~EdK~av~~~g~aaival-W~s~~vv~ 97 (104)
|-|++ .|+-+++...|-++|+ |...|..+
T Consensus 2 e~~~~---~~~~iiG~~~G~ila~l~l~~GF~~ 31 (51)
T PF10031_consen 2 EFWKN---HRGKIIGGLIGLILALLILTFGFWK 31 (51)
T ss_pred hHHHH---CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 44544 6777777777777665 66555544
Done!