Query 034092
Match_columns 104
No_of_seqs 125 out of 1726
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 09:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034092.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034092hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 5.4E-22 1.2E-26 112.3 11.5 102 2-104 17-126 (160)
2 KOG0027 Calmodulin and related 99.9 8E-22 1.7E-26 112.3 12.1 103 2-104 5-119 (151)
3 KOG0037 Ca2+-binding protein, 99.8 1.5E-18 3.3E-23 101.5 11.7 101 4-104 56-158 (221)
4 KOG0030 Myosin essential light 99.8 1.2E-18 2.7E-23 95.3 9.5 104 1-104 7-122 (152)
5 PTZ00183 centrin; Provisional 99.8 4.9E-18 1.1E-22 97.0 12.3 103 2-104 14-124 (158)
6 PTZ00184 calmodulin; Provision 99.8 9.1E-18 2E-22 94.9 11.9 102 3-104 9-118 (149)
7 KOG0028 Ca2+-binding protein ( 99.8 1.8E-17 3.9E-22 92.8 11.2 103 2-104 30-140 (172)
8 KOG0031 Myosin regulatory ligh 99.8 3.4E-17 7.4E-22 91.1 11.7 99 2-104 29-135 (171)
9 KOG0037 Ca2+-binding protein, 99.7 1.8E-16 3.9E-21 92.8 9.9 93 3-95 122-217 (221)
10 KOG0036 Predicted mitochondria 99.6 1.5E-14 3.2E-19 91.7 11.5 102 3-104 12-116 (463)
11 PLN02964 phosphatidylserine de 99.6 5.5E-14 1.2E-18 94.5 12.0 92 3-98 141-243 (644)
12 cd05022 S-100A13 S-100A13: S-1 99.6 2.6E-14 5.7E-19 74.4 7.5 68 3-70 6-76 (89)
13 PF13499 EF-hand_7: EF-hand do 99.6 3.3E-14 7.2E-19 70.4 7.5 62 6-67 1-66 (66)
14 KOG0044 Ca2+ sensor (EF-Hand s 99.5 2E-13 4.4E-18 79.9 9.7 92 6-97 65-174 (193)
15 cd05027 S-100B S-100B: S-100B 99.5 2.2E-13 4.7E-18 71.0 8.4 67 4-70 7-80 (88)
16 KOG0027 Calmodulin and related 99.5 8.8E-13 1.9E-17 75.1 10.2 97 2-98 41-149 (151)
17 COG5126 FRQ1 Ca2+-binding prot 99.5 1.9E-12 4.2E-17 73.6 11.0 95 3-98 54-156 (160)
18 PTZ00183 centrin; Provisional 99.5 3.1E-12 6.8E-17 73.0 11.4 96 3-98 51-154 (158)
19 smart00027 EH Eps15 homology d 99.5 1.1E-12 2.4E-17 69.5 8.1 72 2-75 7-78 (96)
20 KOG0044 Ca2+ sensor (EF-Hand s 99.4 2.9E-12 6.2E-17 75.1 10.2 97 3-99 24-129 (193)
21 cd05025 S-100A1 S-100A1: S-100 99.4 3.3E-12 7.2E-17 67.1 8.6 67 4-70 8-81 (92)
22 cd05031 S-100A10_like S-100A10 99.4 2.6E-12 5.6E-17 67.8 7.9 67 4-70 7-80 (94)
23 PTZ00184 calmodulin; Provision 99.4 1.4E-11 3E-16 69.5 11.5 94 4-97 46-147 (149)
24 cd05026 S-100Z S-100Z: S-100Z 99.4 3.7E-12 8E-17 67.1 8.2 67 4-70 9-82 (93)
25 cd00052 EH Eps15 homology doma 99.4 4.6E-12 1E-16 62.6 7.3 61 8-70 2-62 (67)
26 cd05029 S-100A6 S-100A6: S-100 99.4 8.1E-12 1.8E-16 65.1 8.4 67 4-70 9-80 (88)
27 cd00213 S-100 S-100: S-100 dom 99.4 1.2E-11 2.6E-16 64.5 8.4 69 2-70 5-80 (88)
28 KOG0034 Ca2+/calmodulin-depend 99.3 2.5E-11 5.4E-16 71.0 8.9 93 3-99 31-133 (187)
29 cd00051 EFh EF-hand, calcium b 99.3 2.3E-11 5E-16 58.7 7.5 61 7-67 2-62 (63)
30 PF14658 EF-hand_9: EF-hand do 99.3 1.8E-11 3.8E-16 59.7 6.7 61 9-69 2-64 (66)
31 PF13833 EF-hand_8: EF-hand do 99.3 2.6E-11 5.6E-16 57.6 7.0 52 18-69 1-53 (54)
32 KOG0034 Ca2+/calmodulin-depend 99.3 1E-10 2.2E-15 68.5 10.6 92 8-99 69-176 (187)
33 cd05023 S-100A11 S-100A11: S-1 99.3 1.2E-10 2.6E-15 60.8 8.2 67 4-70 8-81 (89)
34 cd00252 SPARC_EC SPARC_EC; ext 99.3 6.2E-11 1.3E-15 64.6 7.3 62 3-68 46-107 (116)
35 KOG0028 Ca2+-binding protein ( 99.2 1.1E-10 2.4E-15 65.8 7.5 97 3-99 67-171 (172)
36 KOG0041 Predicted Ca2+-binding 99.1 2E-09 4.3E-14 63.0 9.9 68 3-70 97-164 (244)
37 KOG0031 Myosin regulatory ligh 99.1 1.3E-09 2.7E-14 61.3 7.9 67 3-69 99-165 (171)
38 cd05030 calgranulins Calgranul 99.1 1.2E-09 2.5E-14 57.0 7.3 67 4-70 7-80 (88)
39 PF13499 EF-hand_7: EF-hand do 99.1 1.2E-09 2.7E-14 53.8 6.9 54 43-96 2-66 (66)
40 KOG0040 Ca2+-binding actin-bun 99.0 3E-09 6.6E-14 76.7 9.1 91 3-93 2251-2356(2399)
41 KOG0377 Protein serine/threoni 99.0 1.9E-08 4.2E-13 65.2 10.4 94 4-99 463-576 (631)
42 PF00036 EF-hand_1: EF hand; 98.9 2.4E-09 5.2E-14 44.4 3.5 28 6-33 1-28 (29)
43 KOG4223 Reticulocalbin, calume 98.9 6.5E-09 1.4E-13 64.6 6.5 95 3-97 75-190 (325)
44 PLN02964 phosphatidylserine de 98.8 3.3E-08 7.1E-13 67.3 8.3 63 7-69 181-243 (644)
45 PF13405 EF-hand_6: EF-hand do 98.8 1.3E-08 2.9E-13 42.8 3.6 30 6-35 1-31 (31)
46 PF12763 EF-hand_4: Cytoskelet 98.8 3.3E-07 7E-12 49.1 9.1 66 2-70 7-72 (104)
47 KOG0030 Myosin essential light 98.8 4.8E-08 1E-12 54.2 5.9 62 5-67 88-149 (152)
48 KOG4223 Reticulocalbin, calume 98.7 5.6E-08 1.2E-12 60.6 6.6 91 7-97 165-268 (325)
49 cd05024 S-100A10 S-100A10: A s 98.7 4.1E-07 9E-12 47.4 8.4 66 4-70 7-77 (91)
50 smart00027 EH Eps15 homology d 98.7 2.7E-07 5.9E-12 48.8 7.6 59 41-99 10-73 (96)
51 PF14788 EF-hand_10: EF hand; 98.7 2E-07 4.2E-12 43.2 6.1 49 22-70 2-50 (51)
52 KOG0036 Predicted mitochondria 98.7 1.3E-07 2.8E-12 60.8 7.0 66 3-68 80-145 (463)
53 PF00036 EF-hand_1: EF hand; 98.6 8.3E-08 1.8E-12 39.7 3.8 26 43-68 2-27 (29)
54 KOG0377 Protein serine/threoni 98.6 2.2E-07 4.7E-12 60.5 7.1 68 3-70 545-616 (631)
55 cd00213 S-100 S-100: S-100 dom 98.6 5.6E-07 1.2E-11 46.8 6.9 59 41-99 8-80 (88)
56 cd00051 EFh EF-hand, calcium b 98.6 4.5E-07 9.7E-12 43.3 6.1 54 43-96 2-62 (63)
57 cd05031 S-100A10_like S-100A10 98.6 5.1E-07 1.1E-11 47.6 6.4 61 41-101 8-82 (94)
58 cd00052 EH Eps15 homology doma 98.5 6.1E-07 1.3E-11 44.0 5.8 56 44-99 2-62 (67)
59 cd05025 S-100A1 S-100A1: S-100 98.5 1.2E-06 2.6E-11 45.9 7.2 59 41-99 9-81 (92)
60 KOG2643 Ca2+ binding protein, 98.5 5.7E-07 1.2E-11 58.3 6.9 95 5-99 233-347 (489)
61 cd05022 S-100A13 S-100A13: S-1 98.5 1.5E-06 3.3E-11 45.3 7.2 59 41-99 8-76 (89)
62 KOG2562 Protein phosphatase 2 98.5 1.1E-06 2.4E-11 57.4 7.5 86 10-98 283-379 (493)
63 PF13405 EF-hand_6: EF-hand do 98.5 2.9E-07 6.3E-12 38.6 3.3 29 72-100 1-31 (31)
64 cd05027 S-100B S-100B: S-100B 98.5 2.4E-06 5.1E-11 44.5 7.2 59 41-99 8-80 (88)
65 cd05026 S-100Z S-100Z: S-100Z 98.5 2.3E-06 5E-11 45.0 7.2 59 41-99 10-82 (93)
66 PRK12309 transaldolase/EF-hand 98.4 1.3E-06 2.9E-11 56.7 7.0 57 35-98 328-385 (391)
67 PF13202 EF-hand_5: EF hand; P 98.4 4.7E-07 1E-11 36.1 3.1 24 7-30 1-24 (25)
68 cd00252 SPARC_EC SPARC_EC; ext 98.4 1.8E-06 4E-11 47.1 6.2 57 40-96 47-106 (116)
69 KOG0038 Ca2+-binding kinase in 98.4 1.2E-06 2.5E-11 49.3 4.9 91 8-98 74-177 (189)
70 KOG0038 Ca2+-binding kinase in 98.4 5.3E-06 1.2E-10 46.7 7.2 67 7-73 110-181 (189)
71 PF13833 EF-hand_8: EF-hand do 98.3 3E-06 6.4E-11 40.0 5.4 44 55-98 2-53 (54)
72 PF10591 SPARC_Ca_bdg: Secrete 98.3 4.2E-07 9.2E-12 49.4 2.4 60 4-65 53-112 (113)
73 KOG2643 Ca2+ binding protein, 98.3 3.9E-06 8.4E-11 54.6 6.7 96 3-99 316-454 (489)
74 PRK12309 transaldolase/EF-hand 98.3 5.6E-06 1.2E-10 53.9 7.3 55 3-70 332-386 (391)
75 cd05023 S-100A11 S-100A11: S-1 98.3 1.3E-05 2.8E-10 41.9 7.2 58 42-99 10-81 (89)
76 KOG4666 Predicted phosphate ac 98.2 8.6E-06 1.9E-10 51.4 6.8 95 5-99 259-360 (412)
77 cd05029 S-100A6 S-100A6: S-100 98.2 2.7E-05 5.8E-10 40.6 7.1 57 43-99 12-80 (88)
78 KOG4251 Calcium binding protei 98.1 7.3E-06 1.6E-10 50.0 4.7 65 3-67 99-166 (362)
79 KOG0751 Mitochondrial aspartat 98.1 2.7E-05 5.9E-10 51.7 7.1 95 5-102 108-211 (694)
80 KOG0169 Phosphoinositide-speci 98.0 6.3E-05 1.4E-09 52.0 8.6 95 5-99 136-233 (746)
81 PF13202 EF-hand_5: EF hand; P 98.0 9.1E-06 2E-10 32.3 2.7 20 75-94 3-23 (25)
82 cd05030 calgranulins Calgranul 98.0 0.0001 2.3E-09 38.3 6.9 58 42-99 9-80 (88)
83 KOG0751 Mitochondrial aspartat 97.9 0.00027 5.9E-09 47.2 9.5 97 3-99 31-137 (694)
84 KOG0046 Ca2+-binding actin-bun 97.9 7.6E-05 1.7E-09 49.9 7.0 66 4-70 18-86 (627)
85 PF14788 EF-hand_10: EF hand; 97.9 8.5E-05 1.8E-09 34.5 4.7 42 58-99 2-50 (51)
86 smart00054 EFh EF-hand, calciu 97.8 3.6E-05 7.8E-10 30.6 3.1 27 7-33 2-28 (29)
87 PF14658 EF-hand_9: EF-hand do 97.7 0.00028 6.1E-09 34.6 5.8 54 45-98 2-64 (66)
88 PF05042 Caleosin: Caleosin re 97.5 0.0023 5E-08 37.2 7.9 96 4-99 6-125 (174)
89 KOG4065 Uncharacterized conser 97.5 0.00089 1.9E-08 36.4 5.8 65 2-66 64-142 (144)
90 KOG2562 Protein phosphatase 2 97.5 0.00063 1.4E-08 45.0 6.2 88 7-94 313-420 (493)
91 PF09279 EF-hand_like: Phospho 97.4 0.001 2.2E-08 34.1 5.6 62 6-68 1-68 (83)
92 KOG1029 Endocytic adaptor prot 97.2 0.00092 2E-08 47.0 5.0 66 3-70 193-258 (1118)
93 KOG0035 Ca2+-binding actin-bun 97.2 0.0051 1.1E-07 44.0 8.6 91 4-94 746-848 (890)
94 cd05024 S-100A10 S-100A10: A s 97.2 0.0066 1.4E-07 31.8 7.1 56 43-99 10-77 (91)
95 smart00054 EFh EF-hand, calciu 97.2 0.00058 1.3E-08 26.8 2.6 25 44-68 3-27 (29)
96 PF12763 EF-hand_4: Cytoskelet 97.0 0.0094 2E-07 32.0 6.7 56 41-97 10-70 (104)
97 KOG1955 Ral-GTPase effector RA 96.8 0.0054 1.2E-07 41.3 5.6 66 2-69 228-293 (737)
98 KOG0041 Predicted Ca2+-binding 96.8 0.014 3E-07 35.0 6.7 55 43-97 101-162 (244)
99 KOG0040 Ca2+-binding actin-bun 96.8 0.0056 1.2E-07 46.2 5.9 63 37-99 2246-2325(2399)
100 KOG0042 Glycerol-3-phosphate d 96.6 0.0075 1.6E-07 41.3 5.2 68 3-70 591-658 (680)
101 KOG3555 Ca2+-binding proteogly 96.5 0.0074 1.6E-07 38.9 4.7 61 4-68 249-309 (434)
102 KOG4578 Uncharacterized conser 96.4 0.0028 6.1E-08 40.5 2.3 63 7-69 335-398 (421)
103 PF09279 EF-hand_like: Phospho 96.3 0.036 7.7E-07 28.3 5.9 57 42-99 1-70 (83)
104 PF05517 p25-alpha: p25-alpha 96.3 0.093 2E-06 30.2 8.1 63 8-70 2-70 (154)
105 KOG4666 Predicted phosphate ac 96.0 0.021 4.5E-07 36.7 4.6 72 4-76 295-366 (412)
106 KOG4347 GTPase-activating prot 95.9 0.026 5.7E-07 39.2 5.2 70 22-92 535-612 (671)
107 PF05042 Caleosin: Caleosin re 95.9 0.085 1.8E-06 30.9 6.4 27 41-67 96-122 (174)
108 KOG1707 Predicted Ras related/ 95.8 0.28 6E-06 34.2 9.3 97 4-100 194-345 (625)
109 PF10591 SPARC_Ca_bdg: Secrete 95.7 0.005 1.1E-07 33.6 1.1 56 38-93 51-111 (113)
110 KOG4251 Calcium binding protei 95.1 0.088 1.9E-06 32.7 4.9 59 40-98 100-168 (362)
111 KOG2243 Ca2+ release channel ( 94.7 0.1 2.2E-06 40.1 5.1 57 10-67 4062-4118(5019)
112 KOG4347 GTPase-activating prot 94.2 0.073 1.6E-06 37.1 3.5 57 6-63 556-612 (671)
113 PLN02952 phosphoinositide phos 93.8 1.5 3.4E-05 30.9 9.2 80 18-98 13-110 (599)
114 KOG3555 Ca2+-binding proteogly 93.8 0.16 3.5E-06 33.1 4.2 92 5-96 211-308 (434)
115 KOG4065 Uncharacterized conser 93.0 0.4 8.6E-06 26.4 4.4 70 26-95 48-142 (144)
116 KOG0998 Synaptic vesicle prote 93.0 0.054 1.2E-06 39.3 1.4 65 3-69 281-345 (847)
117 PLN02952 phosphoinositide phos 93.0 0.38 8.3E-06 33.7 5.3 46 54-99 13-66 (599)
118 KOG2871 Uncharacterized conser 92.6 0.13 2.8E-06 33.7 2.6 64 4-67 308-372 (449)
119 PF09069 EF-hand_3: EF-hand; 92.6 0.84 1.8E-05 23.9 7.6 63 4-69 2-75 (90)
120 KOG1955 Ral-GTPase effector RA 91.9 0.21 4.6E-06 34.1 2.9 31 3-33 263-293 (737)
121 PF08726 EFhand_Ca_insen: Ca2+ 91.6 0.26 5.6E-06 24.5 2.4 27 71-97 6-32 (69)
122 KOG1707 Predicted Ras related/ 91.0 0.35 7.6E-06 33.7 3.4 62 5-69 315-377 (625)
123 PF12174 RST: RCD1-SRO-TAF4 (R 90.9 1.1 2.5E-05 22.3 4.4 48 20-70 7-54 (70)
124 KOG1265 Phospholipase C [Lipid 90.9 3.1 6.6E-05 30.9 7.8 81 16-99 159-250 (1189)
125 KOG0046 Ca2+-binding actin-bun 90.2 2.6 5.7E-05 29.3 6.7 61 38-99 13-86 (627)
126 KOG1029 Endocytic adaptor prot 89.2 3.2 6.9E-05 30.4 6.8 61 6-69 17-77 (1118)
127 KOG0506 Glutaminase (contains 88.0 4.8 0.0001 27.8 6.7 77 10-86 91-197 (622)
128 PLN02228 Phosphoinositide phos 87.8 5.7 0.00012 28.0 7.2 65 2-68 21-91 (567)
129 KOG0169 Phosphoinositide-speci 87.3 5.6 0.00012 28.8 7.0 62 40-101 135-203 (746)
130 PF09068 EF-hand_2: EF hand; 85.8 1.5 3.3E-05 24.5 3.2 28 7-34 99-126 (127)
131 PLN02230 phosphoinositide phos 85.5 7.4 0.00016 27.7 6.9 65 3-68 27-101 (598)
132 PLN02222 phosphoinositide phos 85.4 7.2 0.00016 27.6 6.8 63 4-68 24-89 (581)
133 PF08414 NADPH_Ox: Respiratory 85.3 4.1 8.9E-05 21.8 7.0 60 39-100 28-94 (100)
134 KOG3449 60S acidic ribosomal p 84.8 4.6 0.0001 22.0 6.2 45 7-51 3-47 (112)
135 KOG3866 DNA-binding protein of 84.3 4.3 9.2E-05 26.5 4.9 58 11-68 250-323 (442)
136 cd08315 Death_TRAILR_DR4_DR5 D 83.7 4.8 0.0001 21.3 8.0 41 3-49 2-42 (96)
137 KOG3866 DNA-binding protein of 83.5 3 6.4E-05 27.2 4.0 24 74-97 299-323 (442)
138 PF08976 DUF1880: Domain of un 82.7 1.6 3.5E-05 24.0 2.3 31 38-68 4-34 (118)
139 PF00404 Dockerin_1: Dockerin 82.7 2 4.3E-05 16.1 2.1 15 15-29 1-15 (21)
140 smart00513 SAP Putative DNA-bi 82.3 2.3 5.1E-05 17.8 2.4 19 86-104 3-21 (35)
141 KOG1785 Tyrosine kinase negati 81.6 14 0.0003 25.1 7.7 83 17-99 186-275 (563)
142 KOG1265 Phospholipase C [Lipid 80.6 14 0.00031 27.8 6.8 67 2-68 218-298 (1189)
143 PF02037 SAP: SAP domain; Int 80.2 2.3 4.9E-05 18.0 2.0 18 87-104 4-21 (35)
144 KOG2301 Voltage-gated Ca2+ cha 79.8 1.9 4.2E-05 33.9 2.6 66 2-68 1414-1483(1592)
145 KOG4286 Dystrophin-like protei 79.8 17 0.00037 26.8 6.9 59 7-66 472-530 (966)
146 KOG3077 Uncharacterized conser 77.0 16 0.00035 23.2 8.0 66 4-69 63-129 (260)
147 KOG1264 Phospholipase C [Lipid 75.0 8.2 0.00018 28.7 4.4 91 8-99 147-250 (1267)
148 PF07308 DUF1456: Protein of u 74.5 8.9 0.00019 19.0 4.8 38 22-59 14-51 (68)
149 PLN02228 Phosphoinositide phos 73.8 30 0.00064 24.7 7.0 61 37-99 20-93 (567)
150 PF08461 HTH_12: Ribonuclease 73.4 8.7 0.00019 18.8 3.2 37 18-54 10-46 (66)
151 PRK00819 RNA 2'-phosphotransfe 73.4 13 0.00028 22.2 4.4 36 16-51 28-63 (179)
152 KOG0869 CCAAT-binding factor, 73.3 9.6 0.00021 22.2 3.7 27 76-102 75-102 (168)
153 KOG0871 Class 2 transcription 72.6 11 0.00023 21.8 3.7 36 62-102 46-82 (156)
154 PF08349 DUF1722: Protein of u 72.1 14 0.0003 20.2 6.6 28 72-99 70-98 (117)
155 PF05517 p25-alpha: p25-alpha 71.8 17 0.00036 21.0 5.8 46 55-100 16-71 (154)
156 PLN02223 phosphoinositide phos 70.9 34 0.00075 24.2 6.6 65 3-68 14-91 (537)
157 PLN02222 phosphoinositide phos 70.9 36 0.00078 24.4 6.9 59 38-98 22-90 (581)
158 PF05099 TerB: Tellurite resis 70.5 5.8 0.00013 22.0 2.5 83 19-102 37-131 (140)
159 PF09336 Vps4_C: Vps4 C termin 70.4 9.7 0.00021 18.4 2.9 26 21-46 29-54 (62)
160 KOG2871 Uncharacterized conser 70.1 6.3 0.00014 26.4 2.8 30 71-100 309-339 (449)
161 TIGR01848 PHA_reg_PhaR polyhyd 69.9 16 0.00034 19.9 5.2 55 13-67 11-75 (107)
162 KOG4578 Uncharacterized conser 69.1 5.2 0.00011 26.3 2.3 55 43-97 335-397 (421)
163 PF01023 S_100: S-100/ICaBP ty 69.0 9.5 0.00021 17.0 4.3 29 70-98 5-36 (44)
164 PF01885 PTS_2-RNA: RNA 2'-pho 68.7 15 0.00032 22.0 4.0 38 15-52 26-63 (186)
165 PF08414 NADPH_Ox: Respiratory 67.3 18 0.00038 19.5 6.2 60 6-70 31-93 (100)
166 KOG0039 Ferric reductase, NADH 66.9 35 0.00076 24.7 6.1 65 4-69 17-89 (646)
167 cd07313 terB_like_2 tellurium 65.2 18 0.0004 18.9 6.8 74 19-93 13-95 (104)
168 PF07879 PHB_acc_N: PHB/PHA ac 65.1 15 0.00033 18.0 3.6 21 13-33 11-31 (64)
169 PF03979 Sigma70_r1_1: Sigma-7 64.6 14 0.00031 18.8 3.0 45 5-53 7-51 (82)
170 PRK00523 hypothetical protein; 63.1 18 0.0004 18.2 3.8 32 19-50 37-68 (72)
171 PTZ00373 60S Acidic ribosomal 62.7 24 0.00052 19.4 5.6 43 9-51 7-49 (112)
172 PF03672 UPF0154: Uncharacteri 62.2 18 0.00039 17.8 3.8 32 19-50 29-60 (64)
173 PF03556 Cullin_binding: Culli 62.0 25 0.00054 19.3 5.7 86 11-96 30-116 (117)
174 COG2818 Tag 3-methyladenine DN 61.6 12 0.00025 22.6 2.6 39 63-101 47-86 (188)
175 PRK09430 djlA Dna-J like membr 60.4 41 0.0009 21.4 8.3 50 19-69 69-120 (267)
176 PF12486 DUF3702: ImpA domain 59.8 32 0.0007 19.9 6.0 44 56-99 54-98 (148)
177 cd07176 terB tellurite resista 59.8 24 0.00052 18.5 4.8 72 19-91 16-98 (111)
178 COG3636 Predicted transcriptio 58.2 20 0.00044 19.2 2.9 30 74-104 64-93 (100)
179 COG2818 Tag 3-methyladenine DN 56.4 15 0.00033 22.0 2.5 43 3-45 53-95 (188)
180 cd05833 Ribosomal_P2 Ribosomal 55.4 33 0.00072 18.7 5.4 42 10-51 6-47 (109)
181 PF11116 DUF2624: Protein of u 55.3 29 0.00064 18.1 7.7 49 20-68 13-61 (85)
182 KOG4004 Matricellular protein 54.8 7.6 0.00017 23.7 1.1 25 43-67 224-248 (259)
183 PHA01351 putative minor struct 54.6 88 0.0019 23.4 6.4 30 75-104 483-514 (1070)
184 cd06404 PB1_aPKC PB1 domain is 54.5 18 0.00039 18.7 2.3 17 71-87 59-76 (83)
185 PF09107 SelB-wing_3: Elongati 54.0 23 0.00049 16.3 3.2 30 19-53 8-37 (50)
186 KOG4301 Beta-dystrobrevin [Cyt 53.9 31 0.00067 23.0 3.7 58 9-67 114-171 (434)
187 PF11020 DUF2610: Domain of un 53.8 30 0.00066 17.8 4.0 48 20-67 27-75 (82)
188 KOG0998 Synaptic vesicle prote 53.4 12 0.00027 27.8 2.2 64 5-70 11-74 (847)
189 PF10281 Ish1: Putative stress 53.4 19 0.00041 15.3 2.2 17 88-104 5-21 (38)
190 KOG1954 Endocytosis/signaling 52.1 38 0.00083 23.2 4.0 57 7-66 446-502 (532)
191 PHA02335 hypothetical protein 51.5 40 0.00086 18.4 5.4 27 56-82 23-49 (118)
192 KOG0035 Ca2+-binding actin-bun 50.9 58 0.0012 24.7 5.0 58 41-98 747-816 (890)
193 PLN02230 phosphoinositide phos 50.7 94 0.002 22.5 6.7 61 38-99 26-103 (598)
194 PRK01844 hypothetical protein; 50.0 34 0.00073 17.2 3.8 32 19-50 36-67 (72)
195 PF11593 Med3: Mediator comple 49.5 64 0.0014 21.8 4.7 49 20-70 6-55 (379)
196 cd08313 Death_TNFR1 Death doma 49.2 37 0.0008 17.4 6.7 64 21-102 8-73 (80)
197 COG3763 Uncharacterized protei 48.0 37 0.00079 17.0 4.0 32 19-50 36-67 (71)
198 cd08316 Death_FAS_TNFRSF6 Deat 47.4 44 0.00096 17.8 6.6 26 20-47 16-41 (97)
199 PRK13654 magnesium-protoporphy 45.8 33 0.00071 22.8 3.0 94 4-102 44-144 (355)
200 KOG2243 Ca2+ release channel ( 45.8 67 0.0015 26.5 4.8 49 47-95 4063-4117(5019)
201 PF00690 Cation_ATPase_N: Cati 45.7 37 0.00079 16.4 3.6 29 74-102 7-36 (69)
202 PF15244 HSD3: Hydroxy-steroid 45.7 63 0.0014 22.2 4.3 46 57-102 359-414 (419)
203 TIGR00624 tag DNA-3-methyladen 45.0 30 0.00065 20.7 2.6 36 65-100 47-83 (179)
204 TIGR03798 ocin_TIGR03798 bacte 43.9 39 0.00085 16.2 4.1 15 89-103 27-41 (64)
205 PF01316 Arg_repressor: Argini 43.4 28 0.00061 17.3 2.0 19 86-104 19-37 (70)
206 PF07862 Nif11: Nitrogen fixat 43.1 34 0.00074 15.3 4.0 17 88-104 28-44 (49)
207 KOG4070 Putative signal transd 43.0 69 0.0015 18.8 4.5 65 6-70 13-86 (180)
208 PRK10353 3-methyl-adenine DNA 42.9 29 0.00063 20.9 2.3 36 65-100 48-84 (187)
209 PF03484 B5: tRNA synthetase B 42.1 17 0.00037 17.8 1.1 18 86-103 18-35 (70)
210 smart00540 LEM in nuclear memb 41.9 37 0.00079 15.3 2.1 18 86-103 5-22 (44)
211 PF12983 DUF3867: Protein of u 41.7 78 0.0017 19.0 6.3 80 20-103 2-89 (186)
212 COG1423 ATP-dependent DNA liga 41.4 81 0.0017 21.2 4.2 16 87-102 329-344 (382)
213 CHL00185 ycf59 magnesium-proto 41.2 44 0.00095 22.2 3.0 94 4-102 40-140 (351)
214 PLN00138 large subunit ribosom 41.0 63 0.0014 17.8 5.6 39 13-51 9-47 (113)
215 PF04433 SWIRM: SWIRM domain; 40.3 22 0.00047 18.1 1.4 35 47-81 43-79 (86)
216 cd07894 Adenylation_RNA_ligase 39.9 75 0.0016 21.1 4.0 17 87-103 288-304 (342)
217 smart00874 B5 tRNA synthetase 39.5 30 0.00065 16.7 1.8 18 86-103 18-35 (71)
218 cd01047 ACSF Aerobic Cyclase S 39.0 64 0.0014 21.2 3.4 94 4-102 24-124 (323)
219 TIGR01639 P_fal_TIGR01639 Plas 38.7 49 0.0011 15.8 3.9 31 20-50 8-38 (61)
220 PF03948 Ribosomal_L9_C: Ribos 38.6 51 0.0011 17.0 2.6 20 84-103 29-49 (87)
221 cd00076 H4 Histone H4, one of 38.3 62 0.0013 16.8 7.8 64 37-103 13-82 (85)
222 KOG3423 Transcription initiati 38.0 31 0.00068 20.4 1.8 20 85-104 151-170 (176)
223 PF13344 Hydrolase_6: Haloacid 38.0 42 0.00091 17.7 2.3 22 83-104 38-59 (101)
224 COG1059 Thermostable 8-oxoguan 37.8 77 0.0017 19.4 3.5 31 72-102 53-86 (210)
225 PF14513 DAG_kinase_N: Diacylg 37.7 81 0.0018 18.0 4.5 32 20-51 47-79 (138)
226 COG1859 KptA RNA:NAD 2'-phosph 37.5 93 0.002 19.3 3.8 37 16-52 54-90 (211)
227 PF08671 SinI: Anti-repressor 37.0 35 0.00076 13.9 1.5 12 87-98 17-28 (30)
228 cd08784 Death_DRs Death Domain 36.9 60 0.0013 16.3 4.6 64 21-102 8-72 (79)
229 PF13041 PPR_2: PPR repeat fam 36.5 20 0.00044 15.8 0.8 25 58-82 4-28 (50)
230 TIGR01209 RNA ligase, Pab1020 36.5 81 0.0017 21.4 3.8 17 87-103 321-337 (374)
231 PRK15047 N-hydroxyarylamine O- 36.4 1.2E+02 0.0026 19.6 5.9 32 73-104 53-88 (281)
232 COG2036 HHT1 Histones H3 and H 36.4 70 0.0015 16.9 6.2 78 23-103 5-88 (91)
233 PLN02508 magnesium-protoporphy 36.1 59 0.0013 21.6 3.0 94 4-102 40-140 (357)
234 COG5069 SAC6 Ca2+-binding acti 36.1 1.1E+02 0.0024 21.7 4.4 77 9-86 489-570 (612)
235 PF09415 CENP-X: CENP-S associ 35.9 62 0.0013 16.2 4.7 57 43-99 5-68 (72)
236 COG1062 AdhC Zn-dependent alco 35.8 50 0.0011 22.2 2.7 42 38-82 315-356 (366)
237 PF12419 DUF3670: SNF2 Helicas 35.4 87 0.0019 17.7 4.1 41 55-95 81-138 (141)
238 PF02761 Cbl_N2: CBL proto-onc 35.3 71 0.0015 16.7 5.8 49 19-67 20-68 (85)
239 TIGR02684 dnstrm_HI1420 probab 35.3 54 0.0012 17.1 2.4 23 82-104 65-87 (89)
240 cd00086 homeodomain Homeodomai 35.2 50 0.0011 14.9 5.1 39 4-49 12-50 (59)
241 KOG1954 Endocytosis/signaling 34.8 57 0.0012 22.4 2.9 26 5-30 477-502 (532)
242 PF03352 Adenine_glyco: Methyl 34.4 30 0.00066 20.7 1.5 36 65-100 43-79 (179)
243 PF09454 Vps23_core: Vps23 cor 34.3 63 0.0014 15.8 4.2 16 55-70 37-52 (65)
244 PTZ00315 2'-phosphotransferase 34.1 1.2E+02 0.0026 22.0 4.4 37 16-52 400-436 (582)
245 PF01535 PPR: PPR repeat; Int 33.5 36 0.00078 12.7 1.9 8 61-68 4-11 (31)
246 cd08327 CARD_RAIDD Caspase act 33.5 80 0.0017 16.7 6.6 55 18-77 32-86 (94)
247 PF00046 Homeobox: Homeobox do 33.1 56 0.0012 14.8 4.7 38 4-48 12-49 (57)
248 PF09373 PMBR: Pseudomurein-bi 32.8 46 0.00099 13.7 3.1 16 55-70 2-17 (33)
249 PF07021 MetW: Methionine bios 32.3 45 0.00097 20.3 2.0 27 77-103 135-162 (193)
250 PF10437 Lip_prot_lig_C: Bacte 32.1 76 0.0016 16.0 4.0 43 23-67 43-86 (86)
251 PF01475 FUR: Ferric uptake re 32.0 83 0.0018 16.9 2.9 17 86-102 23-39 (120)
252 KOG2301 Voltage-gated Ca2+ cha 31.5 53 0.0012 26.7 2.6 33 71-103 1417-1450(1592)
253 PF08044 DUF1707: Domain of un 31.0 66 0.0014 15.0 2.5 14 83-96 20-33 (53)
254 PRK09462 fur ferric uptake reg 30.7 1.1E+02 0.0023 17.4 4.8 32 18-49 30-61 (148)
255 PF09851 SHOCT: Short C-termin 30.7 49 0.0011 13.4 1.9 15 83-97 13-27 (31)
256 PF08002 DUF1697: Protein of u 30.6 51 0.0011 18.6 2.0 23 80-102 11-34 (137)
257 COG3820 Uncharacterized protei 30.1 40 0.00088 20.3 1.5 25 72-96 44-69 (230)
258 TIGR03573 WbuX N-acetyl sugar 29.6 1.7E+02 0.0037 19.3 4.9 37 55-96 300-342 (343)
259 PF12631 GTPase_Cys_C: Catalyt 29.4 74 0.0016 15.7 2.2 10 38-47 60-69 (73)
260 PF11848 DUF3368: Domain of un 29.1 66 0.0014 14.4 3.4 31 19-49 15-46 (48)
261 KOG4403 Cell surface glycoprot 29.1 2.1E+02 0.0045 20.1 6.9 60 4-67 67-127 (575)
262 PF07524 Bromo_TP: Bromodomain 28.0 88 0.0019 15.5 7.2 22 83-104 55-76 (77)
263 PF12854 PPR_1: PPR repeat 28.0 47 0.001 13.5 1.2 24 58-81 8-31 (34)
264 PF03683 UPF0175: Uncharacteri 27.9 81 0.0018 15.7 2.2 16 87-102 46-61 (76)
265 PF15601 Imm42: Immunity prote 27.8 1.2E+02 0.0026 17.3 3.0 27 55-81 47-73 (134)
266 COG5562 Phage envelope protein 27.5 44 0.00096 19.1 1.3 23 14-36 81-103 (137)
267 PF12949 HeH: HeH/LEM domain; 27.0 43 0.00092 14.2 0.9 17 86-102 3-19 (35)
268 PF13829 DUF4191: Domain of un 26.8 1.7E+02 0.0037 18.4 4.5 35 16-50 162-196 (224)
269 KOG4169 15-hydroxyprostaglandi 26.5 1.8E+02 0.0039 18.6 4.1 40 19-58 197-237 (261)
270 PF05788 Orbi_VP1: Orbivirus R 26.5 91 0.002 24.4 3.0 40 15-54 1131-1170(1301)
271 TIGR02029 AcsF magnesium-proto 26.4 78 0.0017 20.9 2.4 48 50-102 82-134 (337)
272 PF08100 Dimerisation: Dimeris 26.2 74 0.0016 14.7 1.8 23 75-97 10-33 (51)
273 PF12995 DUF3879: Domain of un 26.2 1.5E+02 0.0033 17.7 5.5 36 22-57 2-37 (186)
274 PF08672 APC2: Anaphase promot 25.9 90 0.002 14.9 3.4 28 72-99 16-45 (60)
275 PF14237 DUF4339: Domain of un 25.5 74 0.0016 13.9 1.7 20 15-34 7-26 (45)
276 PF00797 Acetyltransf_2: N-ace 25.1 74 0.0016 19.5 2.1 31 73-103 33-67 (240)
277 COG5162 Transcription initiati 24.8 64 0.0014 19.1 1.7 21 84-104 171-191 (197)
278 COG3077 RelB DNA-damage-induci 24.8 49 0.0011 17.4 1.1 7 87-93 28-34 (88)
279 smart00481 POLIIIAc DNA polyme 24.8 93 0.002 14.7 2.2 19 84-102 12-30 (67)
280 TIGR03734 PRTRC_parB PRTRC sys 24.6 2.8E+02 0.006 20.1 5.2 15 87-101 499-513 (554)
281 cd08780 Death_TRADD Death Doma 24.6 1.2E+02 0.0026 16.0 6.4 64 25-102 14-81 (90)
282 PRK13710 plasmid maintenance p 24.3 55 0.0012 16.4 1.2 15 90-104 11-25 (72)
283 PF01397 Terpene_synth: Terpen 24.1 1.7E+02 0.0037 17.5 4.9 16 21-36 46-61 (183)
284 COG2058 RPP1A Ribosomal protei 24.1 1.4E+02 0.003 16.4 4.8 40 21-65 16-55 (109)
285 COG5150 Class 2 transcription 24.0 1.5E+02 0.0032 16.8 3.1 23 79-101 57-80 (148)
286 PRK11639 zinc uptake transcrip 23.9 1.6E+02 0.0035 17.2 3.4 41 26-68 12-52 (169)
287 PF06226 DUF1007: Protein of u 23.5 66 0.0014 19.6 1.7 23 12-34 57-79 (212)
288 PF09412 XendoU: Endoribonucle 23.2 1.5E+02 0.0033 19.0 3.2 32 71-102 102-134 (265)
289 PF11171 DUF2958: Protein of u 22.9 34 0.00073 18.8 0.3 20 84-103 66-85 (112)
290 cd04411 Ribosomal_P1_P2_L12p R 22.8 1.4E+02 0.0031 16.1 6.3 29 22-50 17-45 (105)
291 PRK03745 signal recognition pa 22.5 1E+02 0.0022 16.6 2.0 17 87-103 32-48 (100)
292 PF07499 RuvA_C: RuvA, C-termi 22.2 94 0.002 13.8 3.9 36 25-64 4-39 (47)
293 PF05901 Excalibur: Excalibur 22.2 49 0.0011 14.0 0.7 9 13-21 26-34 (37)
294 PF01922 SRP19: SRP19 protein; 22.0 86 0.0019 16.6 1.7 16 87-102 29-44 (95)
295 PRK00754 signal recognition pa 22.0 1E+02 0.0022 16.4 2.0 16 87-102 35-50 (95)
296 cd05831 Ribosomal_P1 Ribosomal 21.8 1.5E+02 0.0032 16.0 4.8 34 17-50 13-46 (103)
297 PF05383 La: La domain; Inter 21.6 1.1E+02 0.0025 14.6 2.5 18 11-28 21-38 (61)
298 smart00500 SFM Splicing Factor 21.5 1E+02 0.0022 13.9 1.9 16 89-104 3-18 (44)
299 TIGR00735 hisF imidazoleglycer 21.5 1E+02 0.0023 19.2 2.3 21 83-103 233-253 (254)
300 cd08332 CARD_CASP2 Caspase act 21.3 1.4E+02 0.003 15.5 4.4 46 19-69 32-77 (90)
301 PRK04280 arginine repressor; P 21.2 89 0.0019 18.0 1.8 17 88-104 20-36 (148)
302 PF09868 DUF2095: Uncharacteri 21.0 1.6E+02 0.0035 16.5 2.6 39 60-101 67-110 (128)
303 KOG0713 Molecular chaperone (D 20.4 2.5E+02 0.0054 18.9 3.8 47 2-49 28-80 (336)
304 COG1110 Reverse gyrase [DNA re 20.4 3.7E+02 0.008 21.5 5.0 24 8-31 4-27 (1187)
305 PF02042 RWP-RK: RWP-RK domain 20.4 1.2E+02 0.0025 14.2 2.1 16 87-102 27-42 (52)
306 TIGR00158 L9 ribosomal protein 20.3 1E+02 0.0023 17.8 2.0 20 85-104 91-110 (148)
307 PF10897 DUF2713: Protein of u 20.1 2.3E+02 0.005 17.5 3.9 34 55-88 175-227 (246)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.89 E-value=5.4e-22 Score=112.25 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=96.0
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH-------HHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQ 74 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~ 74 (104)
.++++++.+|..+|++++|.|+..+|..+++.+|.+++...+..++..++. +.+.|+|.+|+.++... +++.
T Consensus 17 ~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~ 95 (160)
T COG5126 17 EQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELR 95 (160)
T ss_pred HHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHH
Confidence 467899999999999999999999999999999999999999999999998 88999999999999754 7899
Q ss_pred HHHhhhhc-CCCccCHHHHHHHHHhccccCC
Q 034092 75 HAFSDLER-GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 75 ~~f~~~d~-~~g~i~~~e~~~~l~~~~~~~s 104 (104)
.+|+.||. ++|+|+..++..++..+|.+++
T Consensus 96 ~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~ 126 (160)
T COG5126 96 EAFKLFDKDHDGYISIGELRRVLKSLGERLS 126 (160)
T ss_pred HHHHHhCCCCCceecHHHHHHHHHhhcccCC
Confidence 99999999 9999999999999999998764
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.89 E-value=8e-22 Score=112.27 Aligned_cols=103 Identities=23% Similarity=0.417 Sum_probs=96.6
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH-----------
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL----------- 70 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~----------- 70 (104)
++..+++.+|..+|.+++|.|+..++..+++.+|..++..++..++...|.+++|.|++.+|+.++...
T Consensus 5 ~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~ 84 (151)
T KOG0027|consen 5 EQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASS 84 (151)
T ss_pred HHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccH
Confidence 356789999999999999999999999999999999999999999999999999999999999998744
Q ss_pred HHHHHHHhhhhc-CCCccCHHHHHHHHHhccccCC
Q 034092 71 LKVQHAFSDLER-GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 71 ~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~~~~s 104 (104)
+++..+|+.||. ++|+||.+||..++..+|.+.|
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~ 119 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSLGEKLT 119 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCC
Confidence 289999999999 9999999999999999998865
No 3
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.81 E-value=1.5e-18 Score=101.45 Aligned_cols=101 Identities=29% Similarity=0.530 Sum_probs=95.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHHHHhhhhc
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER 82 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d~ 82 (104)
...+..+|...|.|++|.|+.+|++.+|.... -.++.+.++.|+..+|.+..|.|+++||..++..+..+..+|+.+|.
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~ 135 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDR 135 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhccc
Confidence 34788899999999999999999999998654 47889999999999999999999999999999999999999999999
Q ss_pred -CCCccCHHHHHHHHHhccccCC
Q 034092 83 -GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 83 -~~g~i~~~e~~~~l~~~~~~~s 104 (104)
++|.|+..||..+|..+|++||
T Consensus 136 D~SG~I~~sEL~~Al~~~Gy~Ls 158 (221)
T KOG0037|consen 136 DRSGTIDSSELRQALTQLGYRLS 158 (221)
T ss_pred CCCCcccHHHHHHHHHHcCcCCC
Confidence 9999999999999999999986
No 4
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.80 E-value=1.2e-18 Score=95.33 Aligned_cols=104 Identities=13% Similarity=0.191 Sum_probs=95.0
Q ss_pred CchHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC--CCcceehHHHHHHHHHH--------
Q 034092 1 MENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD--RNGTMSFEEFVELNKFL-------- 70 (104)
Q Consensus 1 ~~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~--~~~~i~~~ef~~~~~~~-------- 70 (104)
+++..+++.+|..||..++|.|+..+...+|+++|.+++..++.+....+.++ +--.++|++|+.++.++
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence 35778999999999999999999999999999999999999999999888776 34679999999998766
Q ss_pred -HHHHHHHhhhhc-CCCccCHHHHHHHHHhccccCC
Q 034092 71 -LKVQHAFSDLER-GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 71 -~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~~~~s 104 (104)
+...+.++.||+ ++|.|...|++++|..+|.++|
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~ 122 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLT 122 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhcc
Confidence 678899999999 9999999999999999998875
No 5
>PTZ00183 centrin; Provisional
Probab=99.80 E-value=4.9e-18 Score=96.98 Aligned_cols=103 Identities=25% Similarity=0.371 Sum_probs=92.9
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH-------HHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQ 74 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~ 74 (104)
.+..++..+|..+|.+++|.|+..||..++..++...+...+..++..++.+++|.|+|.+|+..+... ..+.
T Consensus 14 ~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~ 93 (158)
T PTZ00183 14 DQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEIL 93 (158)
T ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHH
Confidence 356789999999999999999999999999999888888999999999999999999999999887542 4788
Q ss_pred HHHhhhhc-CCCccCHHHHHHHHHhccccCC
Q 034092 75 HAFSDLER-GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 75 ~~f~~~d~-~~g~i~~~e~~~~l~~~~~~~s 104 (104)
.+|+.+|. ++|+|+.++|..++...|.+++
T Consensus 94 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~ 124 (158)
T PTZ00183 94 KAFRLFDDDKTGKISLKNLKRVAKELGETIT 124 (158)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHhCCCCC
Confidence 99999999 9999999999999998876653
No 6
>PTZ00184 calmodulin; Provisional
Probab=99.79 E-value=9.1e-18 Score=94.89 Aligned_cols=102 Identities=25% Similarity=0.381 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH-------HHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQH 75 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~ 75 (104)
+.++++..|..+|.+++|.|+..+|..++..++..++...+..++..++.+++|.|+|++|+.++... ..+..
T Consensus 9 ~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~ 88 (149)
T PTZ00184 9 QIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKE 88 (149)
T ss_pred HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHH
Confidence 45688999999999999999999999999998888888899999999999999999999999987643 56889
Q ss_pred HHhhhhc-CCCccCHHHHHHHHHhccccCC
Q 034092 76 AFSDLER-GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 76 ~f~~~d~-~~g~i~~~e~~~~l~~~~~~~s 104 (104)
+|+.+|. ++|+|+.+++..++...|.+++
T Consensus 89 ~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~ 118 (149)
T PTZ00184 89 AFKVFDRDGNGFISAAELRHVMTNLGEKLT 118 (149)
T ss_pred HHHhhCCCCCCeEeHHHHHHHHHHHCCCCC
Confidence 9999999 9999999999999998877653
No 7
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.8e-17 Score=92.76 Aligned_cols=103 Identities=18% Similarity=0.317 Sum_probs=96.4
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH-------HHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQ 74 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~ 74 (104)
++.++++..|..||++++|+|+..+|+.+++++|+.+...++.+++..++.++.|.|+|++|...+... +++.
T Consensus 30 ~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~ 109 (172)
T KOG0028|consen 30 EQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIK 109 (172)
T ss_pred HHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999999999997643 7899
Q ss_pred HHHhhhhc-CCCccCHHHHHHHHHhccccCC
Q 034092 75 HAFSDLER-GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 75 ~~f~~~d~-~~g~i~~~e~~~~l~~~~~~~s 104 (104)
.+|+.+|- ++|.|+..+|..+...+|.+++
T Consensus 110 ~afrl~D~D~~Gkis~~~lkrvakeLgenlt 140 (172)
T KOG0028|consen 110 KAFRLFDDDKTGKISQRNLKRVAKELGENLT 140 (172)
T ss_pred HHHHcccccCCCCcCHHHHHHHHHHhCcccc
Confidence 99999999 9999999999999999999875
No 8
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.77 E-value=3.4e-17 Score=91.15 Aligned_cols=99 Identities=19% Similarity=0.239 Sum_probs=90.5
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH-------HHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQ 74 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~ 74 (104)
.++++++++|...|.|++|.|+..+++..+..+|..++++++..++... .|.|+|--|+.++.-. +.+.
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdpe~~I~ 104 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDPEEVIL 104 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCHHHHHH
Confidence 3678999999999999999999999999999999999999999999664 6789999999998633 6789
Q ss_pred HHHhhhhc-CCCccCHHHHHHHHHhccccCC
Q 034092 75 HAFSDLER-GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 75 ~~f~~~d~-~~g~i~~~e~~~~l~~~~~~~s 104 (104)
.+|+.||+ ++|.|..+.++++|..+|-++|
T Consensus 105 ~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~ 135 (171)
T KOG0031|consen 105 NAFKTFDDEGSGKIDEDYLRELLTTMGDRFT 135 (171)
T ss_pred HHHHhcCccCCCccCHHHHHHHHHHhcccCC
Confidence 99999999 9999999999999999988764
No 9
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.72 E-value=1.8e-16 Score=92.84 Aligned_cols=93 Identities=20% Similarity=0.399 Sum_probs=84.9
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHHHHhhhhc
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER 82 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d~ 82 (104)
..+.|+.+|+.+|.|++|.|+..||+.+|..+|..++.+..+.+++.++..++|.|.|++|++++..+..+.++|+.+|.
T Consensus 122 ~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~~D~ 201 (221)
T KOG0037|consen 122 YINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRRRDT 201 (221)
T ss_pred HHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999999999999999999999999999999998878999999999999999999999999999
Q ss_pred -CCCcc--CHHHHHHH
Q 034092 83 -GRGYL--VPDNVYEV 95 (104)
Q Consensus 83 -~~g~i--~~~e~~~~ 95 (104)
..|.| +.++|..+
T Consensus 202 ~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 202 AQQGSITISYDDFLQM 217 (221)
T ss_pred ccceeEEEeHHHHHHH
Confidence 88876 45665543
No 10
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.63 E-value=1.5e-14 Score=91.69 Aligned_cols=102 Identities=18% Similarity=0.331 Sum_probs=93.5
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCC-CCHHHHHHHHHHhCCCCCcceehHHHHHHHHH-HHHHHHHHhhh
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-LLKVQHAFSDL 80 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~f~~~ 80 (104)
...+++.+|..+|.+++|.++..++...+..+..+ .+.+..+.++..+|.+.+|.++|.+|...+.. ..++.++|+..
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~i 91 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSI 91 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhh
Confidence 34578999999999999999999999999999776 77788889999999999999999999999874 46789999999
Q ss_pred hc-CCCccCHHHHHHHHHhccccCC
Q 034092 81 ER-GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 81 d~-~~g~i~~~e~~~~l~~~~~~~s 104 (104)
|. ++|.|..+|+.+.|+.+|+++|
T Consensus 92 D~~hdG~i~~~Ei~~~l~~~gi~l~ 116 (463)
T KOG0036|consen 92 DLEHDGKIDPNEIWRYLKDLGIQLS 116 (463)
T ss_pred ccccCCccCHHHHHHHHHHhCCccC
Confidence 99 9999999999999999999886
No 11
>PLN02964 phosphatidylserine decarboxylase
Probab=99.59 E-value=5.5e-14 Score=94.49 Aligned_cols=92 Identities=22% Similarity=0.342 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC-CCCCHHH---HHHHHHHhCCCCCcceehHHHHHHHHHH------HH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSV---VQQMIRMYDFDRNGTMSFEEFVELNKFL------LK 72 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~---~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~ 72 (104)
+.++++++|..+|+|++|.+ +..+++.++ ..++..+ ++.++..+|.+++|.|+++||+.++..+ ++
T Consensus 141 qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEE 216 (644)
T PLN02964 141 EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANK 216 (644)
T ss_pred HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHH
Confidence 45789999999999999986 888889888 4777765 8999999999999999999999998754 56
Q ss_pred HHHHHhhhhc-CCCccCHHHHHHHHHh
Q 034092 73 VQHAFSDLER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 73 ~~~~f~~~d~-~~g~i~~~e~~~~l~~ 98 (104)
+..+|+.+|+ ++|+|+.+||.+++..
T Consensus 217 L~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 217 KEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 9999999999 9999999999999887
No 12
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.57 E-value=2.6e-14 Score=74.42 Aligned_cols=68 Identities=19% Similarity=0.240 Sum_probs=62.1
Q ss_pred hHHHHHHHHHhhCC-CCCCcccHHHHHHHHHh-CCCCCCH-HHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 3 NTAVLREWFDRVDS-EKTGSIAAAQLKHAFAV-GNLDFSL-SVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 3 ~~~~~~~~f~~~D~-~~~g~i~~~el~~~l~~-~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
....+..+|..||. +++|+|+..||+.++.. ++..++. +.++.+++..|.+++|.|+|+||+.++..+
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35678999999999 99999999999999998 8876777 899999999999999999999999998765
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.57 E-value=3.3e-14 Score=70.37 Aligned_cols=62 Identities=31% Similarity=0.550 Sum_probs=54.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHH----HHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLS----VVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 6 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~----~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
+++.+|..+|.|++|.|+..|+..++..++...+.. .++.++..+|.+++|.|+|+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 478999999999999999999999999998766544 45556999999999999999998864
No 14
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.53 E-value=2e-13 Score=79.91 Aligned_cols=92 Identities=21% Similarity=0.322 Sum_probs=55.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH---------------
Q 034092 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------------- 70 (104)
Q Consensus 6 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------------- 70 (104)
-...+|+.+|.|++|.|++.||..++.........+.++=.|+.||.+++|.|+++|++.++...
T Consensus 65 y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~ 144 (193)
T KOG0044|consen 65 YAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEET 144 (193)
T ss_pred HHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCccccc
Confidence 34555666666666666666666666655555555555555666666666666666666655322
Q ss_pred --HHHHHHHhhhhc-CCCccCHHHHHHHHH
Q 034092 71 --LKVQHAFSDLER-GRGYLVPDNVYEVSF 97 (104)
Q Consensus 71 --~~~~~~f~~~d~-~~g~i~~~e~~~~l~ 97 (104)
+....+|+.+|. ++|.||.+||...+.
T Consensus 145 ~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 145 PEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 335566666666 666666666665543
No 15
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.52 E-value=2.2e-13 Score=70.97 Aligned_cols=67 Identities=19% Similarity=0.284 Sum_probs=61.4
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-----CCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-----GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 4 ~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
...+..+|..|| .+++| .|+..+++.+|+. ++...+.+.+..+++..|.+++|.|+|.+|+.++...
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 568899999998 79999 5999999999999 8888899999999999999999999999999987654
No 16
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.50 E-value=8.8e-13 Score=75.14 Aligned_cols=97 Identities=15% Similarity=0.238 Sum_probs=84.6
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCC-----CHHHHHHHHHHhCCCCCcceehHHHHHHHHHH------
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDF-----SLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------ 70 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~-----~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------ 70 (104)
+...++..++...|.+++|.|+..+|..++....... +.+.+..+|+.+|.+++|.|+..++..++..+
T Consensus 41 ~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~ 120 (151)
T KOG0027|consen 41 PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTD 120 (151)
T ss_pred CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCH
Confidence 3567899999999999999999999999998765432 34589999999999999999999999999876
Q ss_pred HHHHHHHhhhhc-CCCccCHHHHHHHHHh
Q 034092 71 LKVQHAFSDLER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 71 ~~~~~~f~~~d~-~~g~i~~~e~~~~l~~ 98 (104)
+.+..+++..|. ++|.|+.++|..++..
T Consensus 121 ~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 121 EECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 689999999999 9999999998887754
No 17
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.49 E-value=1.9e-12 Score=73.62 Aligned_cols=95 Identities=16% Similarity=0.298 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH------HHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQH 75 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~ 75 (104)
+.+++.+++..+|. +++.|++.+|..++... ....+.+++..+|+.+|.+++|.|+..++..++..+ +++..
T Consensus 54 s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ 132 (160)
T COG5126 54 SEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEK 132 (160)
T ss_pred cHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHH
Confidence 45678888888888 88999999999999765 466778899999999999999999999999888765 78889
Q ss_pred HHhhhhc-CCCccCHHHHHHHHHh
Q 034092 76 AFSDLER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 76 ~f~~~d~-~~g~i~~~e~~~~l~~ 98 (104)
+++.+|+ ++|.|+.++|.+.+..
T Consensus 133 ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 133 LLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred HHHhcCCCCCceEeHHHHHHHHhc
Confidence 9999998 9999999999887654
No 18
>PTZ00183 centrin; Provisional
Probab=99.47 E-value=3.1e-12 Score=72.96 Aligned_cols=96 Identities=17% Similarity=0.332 Sum_probs=83.2
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH------HHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQH 75 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~ 75 (104)
....+..+|..+|.+++|.|++.+|..++... ....+...++.+|+.+|.+++|.|+..+|..++... ..+..
T Consensus 51 ~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~ 130 (158)
T PTZ00183 51 KKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQE 130 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHH
Confidence 34578899999999999999999999988764 345567788999999999999999999999998753 57889
Q ss_pred HHhhhhc-CCCccCHHHHHHHHHh
Q 034092 76 AFSDLER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 76 ~f~~~d~-~~g~i~~~e~~~~l~~ 98 (104)
+|..+|. ++|.|+.++|..++..
T Consensus 131 ~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 131 MIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred HHHHhCCCCCCcCcHHHHHHHHhc
Confidence 9999999 9999999999988765
No 19
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.46 E-value=1.1e-12 Score=69.49 Aligned_cols=72 Identities=18% Similarity=0.377 Sum_probs=63.7
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQH 75 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~ 75 (104)
++..+++.+|..+|.+++|.|+..+++.+++..+ ++.+.+..++..++.+++|.|+|++|+.++..+.....
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~ 78 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLN 78 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999999999865 67888999999999999999999999999887755544
No 20
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.45 E-value=2.9e-12 Score=75.10 Aligned_cols=97 Identities=18% Similarity=0.402 Sum_probs=83.0
Q ss_pred hHHHHHHHHHhhCCC-CCCcccHHHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH------HHHH
Q 034092 3 NTAVLREWFDRVDSE-KTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQ 74 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~-~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~ 74 (104)
+..+++.+++.|-.+ ++|.++..+++.++..... +-+...++.+|+.+|.+++|.|+|.||+..+... +.+.
T Consensus 24 ~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~ 103 (193)
T KOG0044|consen 24 SKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLK 103 (193)
T ss_pred CHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhh
Confidence 356788888888665 4899999999999998865 5566778889999999999999999999988754 6788
Q ss_pred HHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 75 HAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 75 ~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
.+|+.+|. ++|+|+.+|+..+....
T Consensus 104 w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 104 WAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred hhheeecCCCCceEcHHHHHHHHHHH
Confidence 99999999 99999999988877653
No 21
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.43 E-value=3.3e-12 Score=67.14 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=59.1
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-CC----CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-GN----LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 4 ~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
.+.+.++|..|| .+++| .|+..+++.+++. ++ ..++...++.++..+|.+++|.|+|.+|+.++..+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 467899999997 99999 4999999999985 43 35678899999999999999999999999988765
No 22
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.42 E-value=2.6e-12 Score=67.79 Aligned_cols=67 Identities=24% Similarity=0.316 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh-----CCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 4 TAVLREWFDRVDS-EK-TGSIAAAQLKHAFAV-----GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 4 ~~~~~~~f~~~D~-~~-~g~i~~~el~~~l~~-----~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
...+..+|..+|. ++ +|.|+..|++.++.. ++..++...++.++..++.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4578999999997 87 799999999999986 4567788999999999999999999999999988755
No 23
>PTZ00184 calmodulin; Provisional
Probab=99.42 E-value=1.4e-11 Score=69.50 Aligned_cols=94 Identities=19% Similarity=0.283 Sum_probs=80.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH------HHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHA 76 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~ 76 (104)
.+.+..+|..+|.+++|.|++.+|..++... ........+..+|..+|.+++|.|+..+|..++... ..+..+
T Consensus 46 ~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~ 125 (149)
T PTZ00184 46 EAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEM 125 (149)
T ss_pred HHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHH
Confidence 4578899999999999999999999988764 334455678899999999999999999999888654 668889
Q ss_pred Hhhhhc-CCCccCHHHHHHHHH
Q 034092 77 FSDLER-GRGYLVPDNVYEVSF 97 (104)
Q Consensus 77 f~~~d~-~~g~i~~~e~~~~l~ 97 (104)
|+.+|. ++|.|+.++|..++.
T Consensus 126 ~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 126 IREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHhcCCCCCCcCcHHHHHHHHh
Confidence 999999 999999999988764
No 24
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.41 E-value=3.7e-12 Score=67.05 Aligned_cols=67 Identities=19% Similarity=0.266 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHh-C----CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 4 TAVLREWFDRVD-SEKTG-SIAAAQLKHAFAV-G----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 4 ~~~~~~~f~~~D-~~~~g-~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
...+.++|..|| .|++| .|+..||+.++.. + ....+...+..++..+|.+++|.|+|.||+.++..+
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 457788899999 78998 5999999999976 2 334477889999999999999999999999998766
No 25
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.39 E-value=4.6e-12 Score=62.63 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=55.4
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 8 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
+.+|..+|++++|.|+..|++.++...+. +.+.++.++..++.+++|.|+|.+|+.++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999998764 78889999999999999999999999987654
No 26
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.39 E-value=8.1e-12 Score=65.05 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHh---CCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 4 TAVLREWFDRVDS-EK-TGSIAAAQLKHAFAV---GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 4 ~~~~~~~f~~~D~-~~-~g~i~~~el~~~l~~---~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
...+-.+|.+||. ++ +|+|+..||+.++.. +|..++.+++..+++..|.+++|.|+|.+|+.++..+
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3467789999998 67 899999999999973 6888899999999999999999999999999988765
No 27
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.37 E-value=1.2e-11 Score=64.50 Aligned_cols=69 Identities=16% Similarity=0.286 Sum_probs=60.1
Q ss_pred chHHHHHHHHHhhCC--CCCCcccHHHHHHHHHh-CCCC----CCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 2 ENTAVLREWFDRVDS--EKTGSIAAAQLKHAFAV-GNLD----FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~--~~~g~i~~~el~~~l~~-~~~~----~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
.+.+.++.+|..+|. +++|.|+..++..+++. ++.. .+...+..++..++.+++|.|+|++|+.++...
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 356789999999999 89999999999999986 4433 358899999999999999999999999988755
No 28
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.33 E-value=2.5e-11 Score=71.05 Aligned_cols=93 Identities=25% Similarity=0.454 Sum_probs=76.0
Q ss_pred hHHHHHHHHHhhCCC-CCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcc-eehHHHHHHHHHH-------HHH
Q 034092 3 NTAVLREWFDRVDSE-KTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGT-MSFEEFVELNKFL-------LKV 73 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~-~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~-i~~~ef~~~~~~~-------~~~ 73 (104)
+...+...|..+|.+ +.|.++..||..+.... .+ .....++..++.+++|. |+|++|+..+... .++
T Consensus 31 EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~-~N---p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl 106 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYLTKEEFLSIPELA-LN---PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKL 106 (187)
T ss_pred HHHHHHHHHHHhccccccCccCHHHHHHHHHHh-cC---cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHH
Confidence 345677889999999 99999999999998332 22 22345777777777777 9999999998754 488
Q ss_pred HHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 74 QHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 74 ~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
.-+|+.||. ++|+|+.+++.+++..+
T Consensus 107 ~faF~vYD~~~~G~I~reel~~iv~~~ 133 (187)
T KOG0034|consen 107 RFAFRVYDLDGDGFISREELKQILRMM 133 (187)
T ss_pred HHHHHHhcCCCCCcCcHHHHHHHHHHH
Confidence 999999999 99999999999999877
No 29
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.33 E-value=2.3e-11 Score=58.70 Aligned_cols=61 Identities=39% Similarity=0.548 Sum_probs=57.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
+..+|..+|.+++|.|+..++..+++.++.+.+.+.+..++..++.+++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5778999999999999999999999999999999999999999999999999999998764
No 30
>PF14658 EF-hand_9: EF-hand domain
Probab=99.32 E-value=1.8e-11 Score=59.73 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=56.8
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCC-cceehHHHHHHHHH
Q 034092 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNL-DFSLSVVQQMIRMYDFDRN-GTMSFEEFVELNKF 69 (104)
Q Consensus 9 ~~f~~~D~~~~g~i~~~el~~~l~~~~~-~~~~~~~~~~~~~~d~~~~-~~i~~~ef~~~~~~ 69 (104)
.+|..+|.++.|.|...++...|++++. .++++.++.+...+|+++. |.|++++|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999987 8899999999999999888 99999999999874
No 31
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.31 E-value=2.6e-11 Score=57.63 Aligned_cols=52 Identities=27% Similarity=0.523 Sum_probs=48.6
Q ss_pred CCCcccHHHHHHHHHhCCCC-CCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 18 KTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 18 ~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
++|.|+..+|+.++..+|.. ++..+++.++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888988 99999999999999999999999999998864
No 32
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.31 E-value=1e-10 Score=68.54 Aligned_cols=92 Identities=21% Similarity=0.343 Sum_probs=78.8
Q ss_pred HHHHHhhCCCCCCc-ccHHHHHHHHHhCCCCCCH-HHHHHHHHHhCCCCCcceehHHHHHHHHHH-------------HH
Q 034092 8 REWFDRVDSEKTGS-IAAAQLKHAFAVGNLDFSL-SVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------------LK 72 (104)
Q Consensus 8 ~~~f~~~D~~~~g~-i~~~el~~~l~~~~~~~~~-~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------------~~ 72 (104)
.+++..++.+++|. |++.+|..++.......+. ..++-.|+.||.+++|.|+.+++..++..+ .-
T Consensus 69 ~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 69 DRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred HHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 56788999999888 9999999999988654444 488999999999999999999999988654 33
Q ss_pred HHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 73 VQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 73 ~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
+...|..+|. ++|.|+.+||..+....
T Consensus 149 ~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 149 VDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 6678999999 99999999999887654
No 33
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.26 E-value=1.2e-10 Score=60.75 Aligned_cols=67 Identities=16% Similarity=0.328 Sum_probs=57.1
Q ss_pred HHHHHHHHHh-hCCCCCC-cccHHHHHHHHHhC-----CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 4 TAVLREWFDR-VDSEKTG-SIAAAQLKHAFAVG-----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 4 ~~~~~~~f~~-~D~~~~g-~i~~~el~~~l~~~-----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
...+..+|.. +|.+++| .|+..||+.++... +...+...+..+++.+|.+++|.|+|+||+.++..+
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4578889999 6788875 99999999999875 234567889999999999999999999999988765
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.26 E-value=6.2e-11 Score=64.58 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=53.1
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (104)
...++..+|..+|.|++|.|+..|+..+. .......+..++..+|.+++|.|+++||+..+.
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45678899999999999999999999876 345567778899999999999999999998874
No 35
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=1.1e-10 Score=65.83 Aligned_cols=97 Identities=16% Similarity=0.288 Sum_probs=81.7
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHh-CCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH------HHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAV-GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQH 75 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~ 75 (104)
..+++..+..-+|++++|.|++.+|..++.. ++...+.+++..+|+.+|.+.+|.|++.+|+.+...+ +++..
T Consensus 67 ~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~e 146 (172)
T KOG0028|consen 67 KKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELME 146 (172)
T ss_pred chHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHH
Confidence 3567777778888888999999999998865 4666689999999999999999999999999998876 46778
Q ss_pred HHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 76 AFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 76 ~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
.-.-+|. ++|-|..+||..+++..
T Consensus 147 MIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 147 MIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHHhcccccccccHHHHHHHHhcC
Confidence 8888898 99999999998887653
No 36
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=99.13 E-value=2e-09 Score=63.01 Aligned_cols=68 Identities=22% Similarity=0.278 Sum_probs=63.0
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
++..+..+|+.||.+.+|+|+..|++..|..+|-+-+.-.++.++...|.+.+|+|+|.+|+-+++..
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999988754
No 37
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.10 E-value=1.3e-09 Score=61.31 Aligned_cols=67 Identities=21% Similarity=0.338 Sum_probs=62.0
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
+++.+..+|..||++++|.|....++++|...|-+++.+++..+++.+..+..|.++|..|+.++.+
T Consensus 99 pe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 99 PEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 5678899999999999999999999999999999999999999999999988999999999998864
No 38
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=99.10 E-value=1.2e-09 Score=56.99 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhCCC--CCCcccHHHHHHHHH-hCCCCCC----HHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 4 TAVLREWFDRVDSE--KTGSIAAAQLKHAFA-VGNLDFS----LSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 4 ~~~~~~~f~~~D~~--~~g~i~~~el~~~l~-~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
...+-..|..|+.. ++|.|+..||+.++. .++..++ ...++.++..+|.+++|.|+|++|+.++..+
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45677889999865 479999999999997 4555555 8899999999999999999999999988644
No 39
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.09 E-value=1.2e-09 Score=53.79 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCCCcceehHHHHHHHHHH----------HHHHHHHhhhhc-CCCccCHHHHHHHH
Q 034092 43 VQQMIRMYDFDRNGTMSFEEFVELNKFL----------LKVQHAFSDLER-GRGYLVPDNVYEVS 96 (104)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~----------~~~~~~f~~~d~-~~g~i~~~e~~~~l 96 (104)
++.+|..+|.+++|.|+.+|+..++..+ +.+..+|+.+|. ++|.|+.+||..++
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 6789999999999999999999998754 456777999999 99999999998764
No 40
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=99.02 E-value=3e-09 Score=76.68 Aligned_cols=91 Identities=19% Similarity=0.415 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCC-------HHHHHHHHHHhCCCCCcceehHHHHHHHHHH-----
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFS-------LSVVQQMIRMYDFDRNGTMSFEEFVELNKFL----- 70 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~-------~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~----- 70 (104)
+..++.-+|.+||++++|.+++.+|+.+|+.+|+.+| .+.++.++...|++.+|+|+..+|+.+|...
T Consensus 2251 ~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI 2330 (2399)
T KOG0040|consen 2251 QLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETENI 2330 (2399)
T ss_pred HHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccc
Confidence 3467888999999999999999999999999987652 4578999999999999999999999998643
Q ss_pred ---HHHHHHHhhhhcCCCccCHHHHH
Q 034092 71 ---LKVQHAFSDLERGRGYLVPDNVY 93 (104)
Q Consensus 71 ---~~~~~~f~~~d~~~g~i~~~e~~ 93 (104)
+++..+|+.++.+..|++..++.
T Consensus 2331 ~s~~eIE~AfraL~a~~~yvtke~~~ 2356 (2399)
T KOG0040|consen 2331 LSSEEIEDAFRALDAGKPYVTKEELY 2356 (2399)
T ss_pred cchHHHHHHHHHhhcCCccccHHHHH
Confidence 68999999999988889888873
No 41
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.97 E-value=1.9e-08 Score=65.22 Aligned_cols=94 Identities=11% Similarity=0.198 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH-------------
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF------------- 69 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~------------- 69 (104)
..++...|+.+|++++|+++...+..+++.+ +.+++...++.-. .....+|.+.|.+....+..
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kl--a~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slve 540 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKL--ANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVE 540 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhc--cCCCcCcceehHhHHHHhhhhhHHHHHHhHHHH
Confidence 4678899999999999999999999999875 6677655443322 22334455666555443321
Q ss_pred -----HHHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 70 -----LLKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 70 -----~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
...++.+|+..|. ++|.|+.+||..+++-+
T Consensus 541 tLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~ 576 (631)
T KOG0377|consen 541 TLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLL 576 (631)
T ss_pred HHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHH
Confidence 1345556666666 66666666666665544
No 42
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.93 E-value=2.4e-09 Score=44.36 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=20.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 034092 6 VLREWFDRVDSEKTGSIAAAQLKHAFAV 33 (104)
Q Consensus 6 ~~~~~f~~~D~~~~g~i~~~el~~~l~~ 33 (104)
+++.+|+.+|.|++|.|+.+||+.+++.
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4667777777777777777777777764
No 43
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=6.5e-09 Score=64.64 Aligned_cols=95 Identities=16% Similarity=0.307 Sum_probs=79.5
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH-------------
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF------------- 69 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~------------- 69 (104)
+...+..++...|.+++|.|+..+++..+..............-+..++.+.+|.|+|+++...+..
T Consensus 75 ~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~ 154 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEED 154 (325)
T ss_pred hHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchh
Confidence 4568899999999999999999999999987655455566677788999999999999999987652
Q ss_pred -------HHHHHHHHhhhhc-CCCccCHHHHHHHHH
Q 034092 70 -------LLKVQHAFSDLER-GRGYLVPDNVYEVSF 97 (104)
Q Consensus 70 -------~~~~~~~f~~~d~-~~g~i~~~e~~~~l~ 97 (104)
+..-++-|+..|. ++|.+|++||..++-
T Consensus 155 ~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH 190 (325)
T KOG4223|consen 155 NEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH 190 (325)
T ss_pred cHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC
Confidence 1356688999999 999999999998874
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.83 E-value=3.3e-08 Score=67.29 Aligned_cols=63 Identities=13% Similarity=0.262 Sum_probs=59.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
+..+|..+|.|++|.|+..||..++..++...+.+++..+|+.+|.+++|.|+++||..++..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 789999999999999999999999998887788999999999999999999999999998875
No 45
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.79 E-value=1.3e-08 Score=42.77 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=25.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-hCC
Q 034092 6 VLREWFDRVDSEKTGSIAAAQLKHAFA-VGN 35 (104)
Q Consensus 6 ~~~~~f~~~D~~~~g~i~~~el~~~l~-~~~ 35 (104)
+++.+|..+|.|++|.|+..||+.+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578899999999999999999999998 554
No 46
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.76 E-value=3.3e-07 Score=49.13 Aligned_cols=66 Identities=24% Similarity=0.464 Sum_probs=57.3
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
++.+.+..+|...|+ ++|.|+-.+.+.++...+ ++.+.+..++...|.+++|.++++||+-.+...
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 456789999999986 589999999999998776 677999999999999999999999999887755
No 47
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.75 E-value=4.8e-08 Score=54.17 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=54.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 5 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
+.+-+-.+.||++++|.|...|++.+|..+|..++.+++..++.-. .+.+|.|+|+.|++.+
T Consensus 88 edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i 149 (152)
T KOG0030|consen 88 EDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHI 149 (152)
T ss_pred HHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHH
Confidence 4566778899999999999999999999999999999999887665 4567999999998764
No 48
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=5.6e-08 Score=60.61 Aligned_cols=91 Identities=18% Similarity=0.220 Sum_probs=71.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH-----------HHHH
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----------LKVQ 74 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----------~~~~ 74 (104)
-+.-|+..|.|++|.++..||...|---. ..+..-.++.-+...|.|++|.|+++||+.=+... .+-.
T Consensus 165 De~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere 244 (325)
T KOG4223|consen 165 DEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTERE 244 (325)
T ss_pred HHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHH
Confidence 45679999999999999999998875332 23334556777888999999999999999766432 3456
Q ss_pred HHHhhhhc-CCCccCHHHHHHHHH
Q 034092 75 HAFSDLER-GRGYLVPDNVYEVSF 97 (104)
Q Consensus 75 ~~f~~~d~-~~g~i~~~e~~~~l~ 97 (104)
+.+..+|+ ++|+++.+|+...+.
T Consensus 245 ~F~~~~DknkDG~L~~dEl~~WI~ 268 (325)
T KOG4223|consen 245 QFFEFRDKNKDGKLDGDELLDWIL 268 (325)
T ss_pred HHHHHhhcCCCCccCHHHHhcccC
Confidence 77888899 999999999886553
No 49
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.72 E-value=4.1e-07 Score=47.38 Aligned_cols=66 Identities=17% Similarity=0.196 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHh-C----CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAV-G----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
...+-.+|..|..+ .+.++..||+.++.. + ....+...+..+++..|.+++|.|+|.||+.++..+
T Consensus 7 i~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45677889999844 579999999999964 2 234467889999999999999999999999998765
No 50
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.70 E-value=2.7e-07 Score=48.76 Aligned_cols=59 Identities=14% Similarity=0.077 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCCCCCcceehHHHHHHHHHH----HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL----LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~----~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
..+..+|..+|.+++|.|+++++..++... +.+..+++.+|. ++|.|+.++|..++...
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 456778999999999999999999998754 678899999999 99999999999887654
No 51
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.70 E-value=2e-07 Score=43.21 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=40.5
Q ss_pred ccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 22 IAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 22 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
++++|++.+|+.++..++...+..+|..+|.+++|.+.-+||...+..+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6889999999999999999999999999999999999999999887654
No 52
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.68 E-value=1.3e-07 Score=60.84 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (104)
.+.++..+|+..|.+.+|.|+.+|+...|+.++..++.+.++.+++..|+++.+.|+++||...+.
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~l 145 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLL 145 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhh
Confidence 456788899999999999999999999999999999999999999999999999999999987654
No 53
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.65 E-value=8.3e-08 Score=39.69 Aligned_cols=26 Identities=38% Similarity=0.731 Sum_probs=15.1
Q ss_pred HHHHHHHhCCCCCcceehHHHHHHHH
Q 034092 43 VQQMIRMYDFDRNGTMSFEEFVELNK 68 (104)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (104)
++.+|+.+|.+++|.|+++||+.++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHH
Confidence 44555666666666666666655554
No 54
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.63 E-value=2.2e-07 Score=60.50 Aligned_cols=68 Identities=22% Similarity=0.474 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhC----CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG----NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~----~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
+...+..+|+..|.|++|.|+.+||..+...+ +...+.+.+.++.+.+|-+++|.|+++||+..++..
T Consensus 545 ~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred chhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 34578889999999999999999999888754 457788888899999999999999999999887644
No 55
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.59 E-value=5.6e-07 Score=46.77 Aligned_cols=59 Identities=17% Similarity=0.153 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCC--CCCcceehHHHHHHHHH-----------HHHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 41 SVVQQMIRMYDF--DRNGTMSFEEFVELNKF-----------LLKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 41 ~~~~~~~~~~d~--~~~~~i~~~ef~~~~~~-----------~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
..+..+|..+|. +++|.|+..++..++.. ...+..+++.+|. ++|.|+.++|..++...
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 456778999999 89999999999999864 3678899999999 99999999999988765
No 56
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.59 E-value=4.5e-07 Score=43.27 Aligned_cols=54 Identities=22% Similarity=0.439 Sum_probs=47.2
Q ss_pred HHHHHHHhCCCCCcceehHHHHHHHHHH------HHHHHHHhhhhc-CCCccCHHHHHHHH
Q 034092 43 VQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLER-GRGYLVPDNVYEVS 96 (104)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~d~-~~g~i~~~e~~~~l 96 (104)
+..+|..++.+++|.|++.+|..++... +.+..+|+.++. ++|.|+.++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4568889999999999999999998765 567889999999 99999999998765
No 57
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.57 E-value=5.1e-07 Score=47.56 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCC-CC-CcceehHHHHHHHHH-----------HHHHHHHHhhhhc-CCCccCHHHHHHHHHhccc
Q 034092 41 SVVQQMIRMYDF-DR-NGTMSFEEFVELNKF-----------LLKVQHAFSDLER-GRGYLVPDNVYEVSFDMVL 101 (104)
Q Consensus 41 ~~~~~~~~~~d~-~~-~~~i~~~ef~~~~~~-----------~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~~ 101 (104)
..+..+|..+|. ++ +|.|+..++..++.. .+.+..+++.+|. ++|.|+.++|..++...++
T Consensus 8 ~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 8 ESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 456788999986 86 699999999998864 1568899999999 9999999999998887653
No 58
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.53 E-value=6.1e-07 Score=44.00 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=48.5
Q ss_pred HHHHHHhCCCCCcceehHHHHHHHHHH----HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 44 QQMIRMYDFDRNGTMSFEEFVELNKFL----LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 44 ~~~~~~~d~~~~~~i~~~ef~~~~~~~----~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
+.+|..+|.+++|.|+.+++..++... +.+..+|+.+|. ++|.|+.++|..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 457888999999999999999988654 568899999999 99999999998887654
No 59
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.53 E-value=1.2e-06 Score=45.93 Aligned_cols=59 Identities=14% Similarity=0.179 Sum_probs=51.3
Q ss_pred HHHHHHHHHhC-CCCCc-ceehHHHHHHHHH-H----------HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 41 SVVQQMIRMYD-FDRNG-TMSFEEFVELNKF-L----------LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 41 ~~~~~~~~~~d-~~~~~-~i~~~ef~~~~~~-~----------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
+.+...|..+| .+++| .|+..++..++.. + +.+..+++.+|. ++|.|+.++|..++..+
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 56788999997 99999 5999999999864 2 568899999999 99999999999888765
No 60
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.53 E-value=5.7e-07 Score=58.32 Aligned_cols=95 Identities=16% Similarity=0.254 Sum_probs=69.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhC------CC--------CC-CHHHHHH--HHHHhCCCCCcceehHHHHHHH
Q 034092 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVG------NL--------DF-SLSVVQQ--MIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 5 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~------~~--------~~-~~~~~~~--~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
..++-+|+.||.|+||.|+.+||..+.+-+ +. .. -...+.. ....+..++++++++++|...+
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 345667999999999999999998887522 11 00 0112221 2233567889999999999999
Q ss_pred HHH--HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 68 KFL--LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 68 ~~~--~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
..+ +-+.--|..+|+ ..|.|+..+|...+..+
T Consensus 313 e~Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 313 ENLQEEILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred HHHHHHHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 877 345566999999 77999999999888765
No 61
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.52 E-value=1.5e-06 Score=45.34 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=51.4
Q ss_pred HHHHHHHHHhCC-CCCcceehHHHHHHHHH-H-------HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 41 SVVQQMIRMYDF-DRNGTMSFEEFVELNKF-L-------LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 41 ~~~~~~~~~~d~-~~~~~i~~~ef~~~~~~-~-------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
..+...|..++. +++|.|+..|+..++.. + +.+..+++.+|. ++|.|+.+||..++..+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 456778999999 99999999999999876 3 458889999999 99999999998887765
No 62
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.49 E-value=1.1e-06 Score=57.37 Aligned_cols=86 Identities=19% Similarity=0.281 Sum_probs=69.8
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHH----HhCCCCCcceehHHHHHHHHHH------HHHHHHHhh
Q 034092 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIR----MYDFDRNGTMSFEEFVELNKFL------LKVQHAFSD 79 (104)
Q Consensus 10 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~----~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~ 79 (104)
.|..+|.|++|.|+.++++..-. ..++...+..+|. ..-...+|+++|++|+-.+..+ ..++..|+.
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrc 359 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRC 359 (493)
T ss_pred HHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheee
Confidence 37778999999999999987753 3455677788887 2233467899999999998766 568999999
Q ss_pred hhc-CCCccCHHHHHHHHHh
Q 034092 80 LER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 80 ~d~-~~g~i~~~e~~~~l~~ 98 (104)
+|- ++|.|+..|+..+.+.
T Consensus 360 lDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 360 LDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred eeccCCCcccHHHHHHHHHH
Confidence 999 9999999998877654
No 63
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.48 E-value=2.9e-07 Score=38.60 Aligned_cols=29 Identities=14% Similarity=0.413 Sum_probs=21.9
Q ss_pred HHHHHHhhhhc-CCCccCHHHHHHHHH-hcc
Q 034092 72 KVQHAFSDLER-GRGYLVPDNVYEVSF-DMV 100 (104)
Q Consensus 72 ~~~~~f~~~d~-~~g~i~~~e~~~~l~-~~~ 100 (104)
++..+|+.+|. ++|+|+.+||..+++ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 35678888888 888888888888887 565
No 64
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.47 E-value=2.4e-06 Score=44.52 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=50.9
Q ss_pred HHHHHHHHHhC-CCCCc-ceehHHHHHHHHH-----H------HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 41 SVVQQMIRMYD-FDRNG-TMSFEEFVELNKF-----L------LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 41 ~~~~~~~~~~d-~~~~~-~i~~~ef~~~~~~-----~------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
..+..+|..++ .+++| .|+..++..++.. + ..+..+++.+|. ++|.|+.++|..++...
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45678899998 78999 6999999999987 3 458999999999 99999999999887654
No 65
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.46 E-value=2.3e-06 Score=45.02 Aligned_cols=59 Identities=14% Similarity=0.159 Sum_probs=49.5
Q ss_pred HHHHHHHHHhC-CCCCc-ceehHHHHHHHHHH-----------HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 41 SVVQQMIRMYD-FDRNG-TMSFEEFVELNKFL-----------LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 41 ~~~~~~~~~~d-~~~~~-~i~~~ef~~~~~~~-----------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
..+..+|..++ .+++| .|+..|+..++... ..+..+++.+|. ++|.|+.+||..++..+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 34566788998 67888 59999999998652 358999999999 99999999999988765
No 66
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.44 E-value=1.3e-06 Score=56.69 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHHHHhhhhc-CCCccCHHHHHHHHHh
Q 034092 35 NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 35 ~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~ 98 (104)
+.......+..+|+.+|.+++|.|+.+||.. ...+|..+|. ++|.|+.+||...+..
T Consensus 328 ~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 328 GGEAFTHAAQEIFRLYDLDGDGFITREEWLG-------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred ccChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 5566667777788888888888888888753 3566778887 7888888887777664
No 67
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.42 E-value=4.7e-07 Score=36.11 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=18.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHH
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHA 30 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~ 30 (104)
++.+|..+|.|++|.|+..|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 456778888888888888887765
No 68
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.42 E-value=1.8e-06 Score=47.14 Aligned_cols=57 Identities=16% Similarity=0.109 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhCCCCCcceehHHHHHHHH--HHHHHHHHHhhhhc-CCCccCHHHHHHHH
Q 034092 40 LSVVQQMIRMYDFDRNGTMSFEEFVELNK--FLLKVQHAFSDLER-GRGYLVPDNVYEVS 96 (104)
Q Consensus 40 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~--~~~~~~~~f~~~d~-~~g~i~~~e~~~~l 96 (104)
...+.-.|..+|.+++|.|+.+|+..+.. ....+...|+.+|. ++|.||.+||...+
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45577789999999999999999998752 12557789999999 99999999999887
No 69
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.38 E-value=1.2e-06 Score=49.28 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=65.0
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhCCCC-CCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH-------HH----HHH
Q 034092 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNLD-FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LK----VQH 75 (104)
Q Consensus 8 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~-~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~----~~~ 75 (104)
+++...|-.|+.|.+++.+|..++..+... +-.-.+.-.|+.||-++++.|.-+++...+..+ ++ ...
T Consensus 74 ~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ek 153 (189)
T KOG0038|consen 74 RRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEK 153 (189)
T ss_pred HHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 345666677888888888888888776543 334456677888888888888888888777655 22 334
Q ss_pred HHhhhhc-CCCccCHHHHHHHHHh
Q 034092 76 AFSDLER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 76 ~f~~~d~-~~g~i~~~e~~~~l~~ 98 (104)
+..-.|. |+|.|+.++|..+...
T Consensus 154 vieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 154 VIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred HHHHhcCCCCCcccHHHHHHHHHh
Confidence 5555677 8888888888876543
No 70
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.36 E-value=5.3e-06 Score=46.67 Aligned_cols=67 Identities=21% Similarity=0.222 Sum_probs=33.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCC-CCCCHHHH----HHHHHHhCCCCCcceehHHHHHHHHHHHHH
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSVV----QQMIRMYDFDRNGTMSFEEFVELNKFLLKV 73 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~~----~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~ 73 (104)
...+|+.||-|+++.|...++...+..+. ..++.+++ .+++...|.+++|++++.+|-+++.+.+..
T Consensus 110 ~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDF 181 (189)
T KOG0038|consen 110 AKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDF 181 (189)
T ss_pred hhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcch
Confidence 33445555555555555555555555542 23443332 233444455555555555555555444433
No 71
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.35 E-value=3e-06 Score=39.96 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=38.6
Q ss_pred CcceehHHHHHHHHHH-------HHHHHHHhhhhc-CCCccCHHHHHHHHHh
Q 034092 55 NGTMSFEEFVELNKFL-------LKVQHAFSDLER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 55 ~~~i~~~ef~~~~~~~-------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~ 98 (104)
+|.|+.++|..++..+ +++..+|..+|. ++|+|+.+||..++..
T Consensus 2 ~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 2 DGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred cCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 6889999999988542 579999999999 9999999999998864
No 72
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.33 E-value=4.2e-07 Score=49.44 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (104)
...+...|..+|.|++|.++..|++.+...+ ..++.-++.++..+|.++++.|++.|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3456777999999999999999988776544 44555677889999999999999999875
No 73
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.30 E-value=3.9e-06 Score=54.62 Aligned_cols=96 Identities=18% Similarity=0.286 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC-CCCC--HHHHHHHHHHhCCCCCcceehHHHHHHHHHH---------
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFS--LSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------- 70 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~--~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------- 70 (104)
+++-+.--|..+|+..+|.|+..+|..+|-... .+.. ...++.+-+.+... +..|++.||.+.++.+
T Consensus 316 q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~~Ff~Fl~~l~dfd~A 394 (489)
T KOG2643|consen 316 QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFKAFFRFLNNLNDFDIA 394 (489)
T ss_pred HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHHHHHHHHhhhhHHHHH
Confidence 344555569999999999999999999887653 2222 23456666677655 4459999988776432
Q ss_pred ------------------------------HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 71 ------------------------------LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 71 ------------------------------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
.-+.-+|..||. ++|.|+.+||..+++.-
T Consensus 395 l~fy~~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 395 LRFYHMAGASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 114456999999 99999999999988764
No 74
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.29 E-value=5.6e-06 Score=53.89 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=48.1
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
-...+..+|..+|.+++|.|+..|+.. +..+|..+|.+++|.|+++||...+...
T Consensus 332 ~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 356788999999999999999999842 4678999999999999999999988754
No 75
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.27 E-value=1.3e-05 Score=41.86 Aligned_cols=58 Identities=12% Similarity=0.106 Sum_probs=47.5
Q ss_pred HHHHHHHH-hCCCCCc-ceehHHHHHHHHHH-----------HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 42 VVQQMIRM-YDFDRNG-TMSFEEFVELNKFL-----------LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 42 ~~~~~~~~-~d~~~~~-~i~~~ef~~~~~~~-----------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
.+..+|.. .+.++++ .|+..||..++... ..+..+++.+|. ++|.|+.+||..++..+
T Consensus 10 ~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 10 SLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 34567777 5566655 89999999998754 568999999999 99999999999887765
No 76
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.22 E-value=8.6e-06 Score=51.36 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=80.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH---H--HHHHHHh
Q 034092 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---L--KVQHAFS 78 (104)
Q Consensus 5 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~---~--~~~~~f~ 78 (104)
+.+...|..||.+.+|.+++.+-...+.-++ .+.+...++-.|+.++...||.+.-.+|..++... + .+--.|+
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~ 338 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFP 338 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccch
Confidence 5788899999999999999999988888774 56777889999999999999999998888877644 2 3456799
Q ss_pred hhhc-CCCccCHHHHHHHHHhc
Q 034092 79 DLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 79 ~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
..++ .+|.|+.++|..+....
T Consensus 339 ~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 339 SIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred hhhcccCcceeHHHHHHHHHhC
Confidence 9999 99999999999887655
No 77
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.18 E-value=2.7e-05 Score=40.56 Aligned_cols=57 Identities=16% Similarity=0.135 Sum_probs=47.1
Q ss_pred HHHHHHHhCC-CC-CcceehHHHHHHHHH---------HHHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 43 VQQMIRMYDF-DR-NGTMSFEEFVELNKF---------LLKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 43 ~~~~~~~~d~-~~-~~~i~~~ef~~~~~~---------~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
+-.+|..|+. ++ +|.|+.+||..++.. .+++..+++.+|. ++|.|+.+||..++..+
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3457778876 56 789999999999963 2678999999999 99999999998887654
No 78
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.12 E-value=7.3e-06 Score=49.96 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=50.2
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC---CCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN---LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~---~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
...+++.+|.+.|.|.+|.|+..|++..+..-. +.-..++-+..|+..|.+++|+|+++||..-+
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkF 166 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKF 166 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHH
Confidence 356889999999999999999999998886421 11222334457888899999999999997644
No 79
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.08 E-value=2.7e-05 Score=51.74 Aligned_cols=95 Identities=15% Similarity=0.306 Sum_probs=73.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCCC------CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH--HHHHHHH
Q 034092 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL------DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF--LLKVQHA 76 (104)
Q Consensus 5 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~------~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~--~~~~~~~ 76 (104)
.....+|..||..++|.++++++..++..... ..+.+.++..|.. .....++|.+|.+++.. .+...++
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~---~~~r~~ny~~f~Q~lh~~~~E~~~qa 184 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGD---IRKRHLNYAEFTQFLHEFQLEHAEQA 184 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhh---HHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999987642 3344555554433 33456999999999874 4778999
Q ss_pred Hhhhhc-CCCccCHHHHHHHHHhcccc
Q 034092 77 FSDLER-GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 77 f~~~d~-~~g~i~~~e~~~~l~~~~~~ 102 (104)
|+..|+ +.|+||.=++...+.....+
T Consensus 185 fr~~d~~~ng~is~Ldfq~imvt~~~h 211 (694)
T KOG0751|consen 185 FREKDKAKNGFISVLDFQDIMVTIRIH 211 (694)
T ss_pred HHHhcccCCCeeeeechHhhhhhhhhh
Confidence 999999 99999998888887665433
No 80
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.05 E-value=6.3e-05 Score=52.04 Aligned_cols=95 Identities=22% Similarity=0.347 Sum_probs=81.4
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH---HHHHHHHhhhh
Q 034092 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---LKVQHAFSDLE 81 (104)
Q Consensus 5 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~---~~~~~~f~~~d 81 (104)
.-+..+|...|++++|.++..+...++..++..+....+..+++..+..+.+.+...+|......+ .++..+|..+.
T Consensus 136 ~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s 215 (746)
T KOG0169|consen 136 HWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYS 215 (746)
T ss_pred HHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHh
Confidence 456778999999999999999999999999999999999999999988889999999998887654 46666666666
Q ss_pred cCCCccCHHHHHHHHHhc
Q 034092 82 RGRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 82 ~~~g~i~~~e~~~~l~~~ 99 (104)
.+.++++.+++..++...
T Consensus 216 ~~~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 216 HGKEYLSTDDLLRFLEEE 233 (746)
T ss_pred CCCCccCHHHHHHHHHHh
Confidence 568889999999998765
No 81
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.02 E-value=9.1e-06 Score=32.31 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=9.7
Q ss_pred HHHhhhhc-CCCccCHHHHHH
Q 034092 75 HAFSDLER-GRGYLVPDNVYE 94 (104)
Q Consensus 75 ~~f~~~d~-~~g~i~~~e~~~ 94 (104)
.+|+.+|. ++|.|+.+||.+
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 34444454 455555555444
No 82
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.97 E-value=0.0001 Score=38.32 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=46.9
Q ss_pred HHHHHHHHhCCC--CCcceehHHHHHHHHH-----------HHHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 42 VVQQMIRMYDFD--RNGTMSFEEFVELNKF-----------LLKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 42 ~~~~~~~~~d~~--~~~~i~~~ef~~~~~~-----------~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
.+-.+|..|... .+|.|+.+|+..++.. ...+..+|+.+|. ++|.|+.++|..++..+
T Consensus 9 ~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 9 TIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 344577777654 4689999999999862 3568899999999 99999999999888765
No 83
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.92 E-value=0.00027 Score=47.22 Aligned_cols=97 Identities=19% Similarity=0.299 Sum_probs=72.0
Q ss_pred hHHHHHHHHHhh---CCCCCCcccHHHHHHHHHh-CCC-CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH----HHHH
Q 034092 3 NTAVLREWFDRV---DSEKTGSIAAAQLKHAFAV-GNL-DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF----LLKV 73 (104)
Q Consensus 3 ~~~~~~~~f~~~---D~~~~g~i~~~el~~~l~~-~~~-~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~----~~~~ 73 (104)
+.++++.+|..+ +.++..+++.++|..-.-. .+. ..+...++.+-...|..+||-|+|+||+.+=.. -...
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC~pDal~ 110 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLCAPDALF 110 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhccCchHHH
Confidence 467888888777 5677788999987654433 333 344555555555567778899999999986432 2456
Q ss_pred HHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 74 QHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 74 ~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
..+|+.||. +.|.++.+++.+++.+.
T Consensus 111 ~~aFqlFDr~~~~~vs~~~~~~if~~t 137 (694)
T KOG0751|consen 111 EVAFQLFDRLGNGEVSFEDVADIFGQT 137 (694)
T ss_pred HHHHHHhcccCCCceehHHHHHHHhcc
Confidence 788999999 99999999999998765
No 84
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.92 E-value=7.6e-05 Score=49.89 Aligned_cols=66 Identities=27% Similarity=0.486 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCC---CCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLD---FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~---~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
..++...|...| +++|+++..++..++...+.. ...++++.+....+.+.+|.|+|++|+.++..+
T Consensus 18 l~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 18 LRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 457788899999 999999999999999987643 457889999999999999999999999976543
No 85
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.86 E-value=8.5e-05 Score=34.49 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=33.1
Q ss_pred eehHHHHHHHHHH------HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 58 MSFEEFVELNKFL------LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 58 i~~~ef~~~~~~~------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
++|.|...+++.+ .-+..+|+.+|. ++|++..+||..+++.+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 5677776666543 567889999999 99999999999998764
No 86
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.84 E-value=3.6e-05 Score=30.62 Aligned_cols=27 Identities=26% Similarity=0.416 Sum_probs=19.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHh
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHAFAV 33 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~l~~ 33 (104)
++.+|..+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 556777777777777777777776653
No 87
>PF14658 EF-hand_9: EF-hand domain
Probab=97.75 E-value=0.00028 Score=34.60 Aligned_cols=54 Identities=17% Similarity=0.372 Sum_probs=47.4
Q ss_pred HHHHHhCCCCCcceehHHHHHHHHHH-------HHHHHHHhhhhc-CC-CccCHHHHHHHHHh
Q 034092 45 QMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLER-GR-GYLVPDNVYEVSFD 98 (104)
Q Consensus 45 ~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~d~-~~-g~i~~~e~~~~l~~ 98 (104)
..|..+|.++.|.|....++.+++.. .++..+.+.+|+ +. |.|+.+.|..+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 36889999999999999999998865 678899999999 76 99999999988764
No 88
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.48 E-value=0.0023 Score=37.24 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC---CCccee---hHHHHHHHH---H-----
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD---RNGTMS---FEEFVELNK---F----- 69 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~---~~~~i~---~~ef~~~~~---~----- 69 (104)
...|++=...||.|++|.|.+.|--..++++|.++--+.+..++=..... ..+-+. +.-++.-+. +
T Consensus 6 ~T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 6 MTVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred ccHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 34566667788999999999999999999988776544433222111100 000000 000000000 0
Q ss_pred ---------HHHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 70 ---------LLKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 70 ---------~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
.+..+++|.+++. +.+.+|..|+.++++..
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 1567788888877 77778888887777664
No 89
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.00089 Score=36.41 Aligned_cols=65 Identities=17% Similarity=0.291 Sum_probs=45.5
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhC------CC-C---CCHHHHHHH----HHHhCCCCCcceehHHHHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVG------NL-D---FSLSVVQQM----IRMYDFDRNGTMSFEEFVEL 66 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~------~~-~---~~~~~~~~~----~~~~d~~~~~~i~~~ef~~~ 66 (104)
++.+--...|...|.|+++.++--|+.+++... |. + .++.++..+ .+.-|.+++|.|+|-||...
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 344444567888999999999999999999743 22 1 234454444 44456788899999998753
No 90
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.47 E-value=0.00063 Score=44.98 Aligned_cols=88 Identities=8% Similarity=0.117 Sum_probs=67.1
Q ss_pred HHHHHHh----hCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH----H--------
Q 034092 7 LREWFDR----VDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF----L-------- 70 (104)
Q Consensus 7 ~~~~f~~----~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~----~-------- 70 (104)
+.++|.+ +-...+|.+++.+|...+-++....+...++-+|+-+|.+++|.++..|..-.... +
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l 392 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEAL 392 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4667772 23345788999999999988877777778888999999999999998886655432 2
Q ss_pred ---HHHHHHHhhhhc-CCCccCHHHHHH
Q 034092 71 ---LKVQHAFSDLER-GRGYLVPDNVYE 94 (104)
Q Consensus 71 ---~~~~~~f~~~d~-~~g~i~~~e~~~ 94 (104)
.-+.+++....+ +.+.||+.+|..
T Consensus 393 ~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 393 PFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred cHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 235566666667 799999999887
No 91
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.43 E-value=0.001 Score=34.10 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=48.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCC--CCCHHHHHHHHHHhCCC----CCcceehHHHHHHHH
Q 034092 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDFD----RNGTMSFEEFVELNK 68 (104)
Q Consensus 6 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~ 68 (104)
++..+|..+.. +.+.++..+|...|+.-.. ..+.+.+..++..+.++ ..+.+++++|...+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~ 68 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLF 68 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHC
Confidence 47789999966 7899999999999987633 46788888888887543 357888888888764
No 92
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.21 E-value=0.00092 Score=46.96 Aligned_cols=66 Identities=20% Similarity=0.421 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
+.-++..+|+..|+..+|+++-.+-+.+|-..+ ++...+..++..-|.++||+++.+||+-.+...
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 455788999999999999999999999987666 566778889999999999999999999876544
No 93
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.21 E-value=0.0051 Score=44.00 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=69.6
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCH-----HHHHHHHHHhCCCCCcceehHHHHHHHHHH-------H
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSL-----SVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------L 71 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~-----~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~ 71 (104)
.+++++.|..+++...|..+..++..+|..+|..... .++..++..-+....|.+++.+|...+.+. .
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l~~~~ 825 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDLDTEL 825 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhhcHHH
Confidence 5689999999999999999999999999999987653 233344444555666889999999988643 3
Q ss_pred HHHHHHhhhhcCCCccCHHHHHH
Q 034092 72 KVQHAFSDLERGRGYLVPDNVYE 94 (104)
Q Consensus 72 ~~~~~f~~~d~~~g~i~~~e~~~ 94 (104)
.+...|+.+-+...+|..+|+..
T Consensus 826 r~i~s~~d~~ktk~~lL~eEL~~ 848 (890)
T KOG0035|consen 826 RAILAFEDWAKTKAYLLLEELVR 848 (890)
T ss_pred HHHHHHHHHHcchhHHHHHHHHh
Confidence 45566777666444789988876
No 94
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.20 E-value=0.0066 Score=31.79 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=44.1
Q ss_pred HHHHHHHhCCCCCcceehHHHHHHHHHH-----------HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 43 VQQMIRMYDFDRNGTMSFEEFVELNKFL-----------LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
+-.+|..|.. ..+.++..||..++... ..+..+++..|. ++|.|+..||..++..+
T Consensus 10 lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 10 MMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3346677763 35689999999998643 458899999999 99999999998876554
No 95
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.19 E-value=0.00058 Score=26.83 Aligned_cols=25 Identities=40% Similarity=0.793 Sum_probs=14.0
Q ss_pred HHHHHHhCCCCCcceehHHHHHHHH
Q 034092 44 QQMIRMYDFDRNGTMSFEEFVELNK 68 (104)
Q Consensus 44 ~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (104)
+.++..++.+++|.|++.+|..++.
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555556666666555543
No 96
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.99 E-value=0.0094 Score=32.04 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=44.0
Q ss_pred HHHHHHHHHhCCCCCcceehHHHHHHHHHH----HHHHHHHhhhhc-CCCccCHHHHHHHHH
Q 034092 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL----LKVQHAFSDLER-GRGYLVPDNVYEVSF 97 (104)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~----~~~~~~f~~~d~-~~g~i~~~e~~~~l~ 97 (104)
.....+|...+. .+|.|+-.+-..++..- +.+.++|...|. ++|+++.+||.-++.
T Consensus 10 ~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 10 QKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 345667777764 57999999988887643 789999999999 999999999876554
No 97
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.0054 Score=41.33 Aligned_cols=66 Identities=20% Similarity=0.396 Sum_probs=56.1
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
++++.+-.-|+..-+|.+|.|+-.--++++.... ++-.++..+|+..|-+.+|.+++.|||..+..
T Consensus 228 EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 228 EQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 4666777788888899999999988888887655 55688999999999999999999999998763
No 98
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.78 E-value=0.014 Score=34.98 Aligned_cols=55 Identities=20% Similarity=0.317 Sum_probs=33.8
Q ss_pred HHHHHHHhCCCCCcceehHHHHHHHHHH------HHHHHHHhhhhc-CCCccCHHHHHHHHH
Q 034092 43 VQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLER-GRGYLVPDNVYEVSF 97 (104)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~d~-~~g~i~~~e~~~~l~ 97 (104)
+..+|+.||.+.||.|++.|+..+|..+ -.++.+-+..|. .+|.|+.-||.-+++
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfr 162 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFR 162 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 3456666777777777777776666554 234555556666 666676666555444
No 99
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.76 E-value=0.0056 Score=46.23 Aligned_cols=63 Identities=13% Similarity=0.278 Sum_probs=53.3
Q ss_pred CCCHHHH---HHHHHHhCCCCCcceehHHHHHHHHHH-------------HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 37 DFSLSVV---QQMIRMYDFDRNGTMSFEEFVELNKFL-------------LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 37 ~~~~~~~---~~~~~~~d~~~~~~i~~~ef~~~~~~~-------------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
+++++.+ ..+|..+|.+.+|.+++.+|..+++.+ +.+..+....|| .+|+|++.+++.++...
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 4555544 457999999999999999999998754 478999999999 99999999999988654
No 100
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.59 E-value=0.0075 Score=41.28 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=60.1
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
+....+.-|..+|.|+.|++...++..+|+..+...+.+.++......+...+|.+...+|.+++...
T Consensus 591 ~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 591 DFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 34456677899999999999999999999999889999999999999988889999999999988754
No 101
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.52 E-value=0.0074 Score=38.88 Aligned_cols=61 Identities=16% Similarity=0.260 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (104)
..++..+|.++|.|.+|.++..|+..+ ...-.+.-++.+|..+|.-.+|.|+-.||+..+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I----~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~ 309 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAI----ELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQ 309 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhh----hccCchhHHHHHHhhhcccccCccccchhhhhhc
Confidence 356778888888888888888887654 4445566777888888888888888888888764
No 102
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=96.41 E-value=0.0028 Score=40.48 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=48.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
+...|.++|.|+++.|+.+|++.+=.-+ ...-+..-.+.+++.+|.+++..|++.|+...+..
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 4456899999999999999966543332 22334556678999999999999999999988753
No 103
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.32 E-value=0.036 Score=28.28 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHHHHHHhCCCCCcceehHHHHHHHHHH--------HHHHHHHhhhhc-----CCCccCHHHHHHHHHhc
Q 034092 42 VVQQMIRMYDFDRNGTMSFEEFVELNKFL--------LKVQHAFSDLER-----GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 42 ~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------~~~~~~f~~~d~-----~~g~i~~~e~~~~l~~~ 99 (104)
++..+|..+.. +.+.++.++|...+... ..+..+++.+.+ ..+.++.+.|..+|.+-
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 35678888855 67889999999998632 556666766643 47899999999999765
No 104
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.26 E-value=0.093 Score=30.21 Aligned_cols=63 Identities=11% Similarity=0.167 Sum_probs=47.0
Q ss_pred HHHHHhh---CCCCCCcccHHHHHHHHHhCCC---CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 8 REWFDRV---DSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 8 ~~~f~~~---D~~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
+.+|..| -..+...++...|..+++..+. .++...+..+|..+...+...|+|++|...+..+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 3445554 4555678999999999998753 5788889999999877777789999999888755
No 105
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=95.98 E-value=0.021 Score=36.70 Aligned_cols=72 Identities=10% Similarity=0.087 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHA 76 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~ 76 (104)
...++-+|+.|+.+.+|++...++..+++... .+..-.+-.+|+..+...+++|.+.+|..++.....+...
T Consensus 295 ~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~~ 366 (412)
T KOG4666|consen 295 PVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAATEPNLALS 366 (412)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhc-CcceeeccccchhhhcccCcceeHHHHHHHHHhCchhhhh
Confidence 35678899999999999999988888887642 2333334457888888889999999999987655444433
No 106
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.94 E-value=0.026 Score=39.15 Aligned_cols=70 Identities=21% Similarity=0.257 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHhCC-CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH------HHHHHHHhhhhc-CCCccCHHHH
Q 034092 22 IAAAQLKHAFAVGN-LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLER-GRGYLVPDNV 92 (104)
Q Consensus 22 i~~~el~~~l~~~~-~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~d~-~~g~i~~~e~ 92 (104)
++...+..+++.+. ...+...+..+|...|.+.+|.++|.+++..+..+ +.+...|+.+|+ ++ ....++.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 55556666666542 34555667788999999999999999998877643 778888999998 77 7766664
No 107
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=95.88 E-value=0.085 Score=30.91 Aligned_cols=27 Identities=7% Similarity=0.209 Sum_probs=12.2
Q ss_pred HHHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 41 SVVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
+..+.+|..+.....+.+++.|...++
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~ 122 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRML 122 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 344444444444434444444444443
No 108
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.76 E-value=0.28 Score=34.16 Aligned_cols=97 Identities=18% Similarity=0.282 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHH-hCCCCCCHHHHHHH---HHHhCCC--CCcceehHHHHHHHHHH-------
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFA-VGNLDFSLSVVQQM---IRMYDFD--RNGTMSFEEFVELNKFL------- 70 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~-~~~~~~~~~~~~~~---~~~~d~~--~~~~i~~~ef~~~~~~~------- 70 (104)
...+.++|...|.|.+|.++-.|+...=. .++.++....+..+ ....-++ .+..++...|+.+....
T Consensus 194 v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfiergr~E 273 (625)
T KOG1707|consen 194 VKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIERGRHE 273 (625)
T ss_pred HHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHhcccc
Confidence 45788999999999999999998765433 23555555444433 2222121 23345555565543210
Q ss_pred -----------------------------------------HHHHHHHhhhhc-CCCccCHHHHHHHHHhcc
Q 034092 71 -----------------------------------------LKVQHAFSDLER-GRGYLVPDNVYEVSFDMV 100 (104)
Q Consensus 71 -----------------------------------------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~ 100 (104)
.-+..+|..+|. ++|.++..|+...+...+
T Consensus 274 ttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 274 TTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred chhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 347788999999 999999999999887763
No 109
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.75 E-value=0.005 Score=33.57 Aligned_cols=56 Identities=18% Similarity=0.161 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH----HHHHHHHhhhhc-CCCccCHHHHH
Q 034092 38 FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL----LKVQHAFSDLER-GRGYLVPDNVY 93 (104)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~----~~~~~~f~~~d~-~~g~i~~~e~~ 93 (104)
.-...+.=.|..+|.+++|.++..|+..+...+ .=+...|+..|. ++|.|+..|+.
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 344566667999999999999999987765422 226778899999 99999999975
No 110
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=95.08 E-value=0.088 Score=32.72 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhCCCCCcceehHHHHHHHHHH---------HHHHHHHhhhhc-CCCccCHHHHHHHHHh
Q 034092 40 LSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---------LKVQHAFSDLER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 40 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~---------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~ 98 (104)
...+..+|...|-+.++.|+-.|..+.+... ++-+--|+..|+ ++|.|+.+|+.--+..
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 4456778999999999999999988776421 344556899999 9999999998765543
No 111
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.66 E-value=0.1 Score=40.05 Aligned_cols=57 Identities=19% Similarity=0.369 Sum_probs=43.5
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 10 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
-|+-||+|+.|.|+..+|.+++..-. ..+.+++.-+..-...+.+...+|++|+.-+
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k-~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHK-HYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhccc-cchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 46778999999999999999997532 3445566555555566777889999998765
No 112
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=94.23 E-value=0.073 Score=37.10 Aligned_cols=57 Identities=18% Similarity=0.250 Sum_probs=49.3
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHH
Q 034092 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEF 63 (104)
Q Consensus 6 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef 63 (104)
-+.++|..+|.+.+|.++++++...|..+...-..+.+..+|+.++.+++ ..+.++.
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 45789999999999999999999999988776677888889999998887 7777765
No 113
>PLN02952 phosphoinositide phospholipase C
Probab=93.85 E-value=1.5 Score=30.87 Aligned_cols=80 Identities=13% Similarity=0.124 Sum_probs=56.7
Q ss_pred CCCcccHHHHHHHHHhCCC--CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH--------HHHHHHHhhh-------
Q 034092 18 KTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------LKVQHAFSDL------- 80 (104)
Q Consensus 18 ~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------~~~~~~f~~~------- 80 (104)
+.|.+++.+++...+.+.. ..+..++..+|..+..++ +.++.++|...+... .....++..+
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~ 91 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHV 91 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccc
Confidence 4689999999888777642 347888999999986543 679999999988643 2334444322
Q ss_pred hc-CCCccCHHHHHHHHHh
Q 034092 81 ER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 81 d~-~~g~i~~~e~~~~l~~ 98 (104)
.. +.+.++.+.|..+|..
T Consensus 92 ~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 92 TRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred ccccccCcCHHHHHHHHcC
Confidence 12 3455899999988864
No 114
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=93.78 E-value=0.16 Score=33.07 Aligned_cols=92 Identities=12% Similarity=0.137 Sum_probs=66.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCCC---CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH--HHHHHHHHhh
Q 034092 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF--LLKVQHAFSD 79 (104)
Q Consensus 5 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~--~~~~~~~f~~ 79 (104)
+.|+.+|..+=.+.++......+..+-..+.. +.=...+-=||...|.+.++.++-.|...+..- ..=++..|..
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfns 290 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNS 290 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhh
Confidence 46788888887776666666555554333221 222455666899999999999999998776542 2457888999
Q ss_pred hhc-CCCccCHHHHHHHH
Q 034092 80 LER-GRGYLVPDNVYEVS 96 (104)
Q Consensus 80 ~d~-~~g~i~~~e~~~~l 96 (104)
.|. .+|.|+..|+..-+
T Consensus 291 CD~~kDg~iS~~EWC~CF 308 (434)
T KOG3555|consen 291 CDTYKDGSISTNEWCYCF 308 (434)
T ss_pred hcccccCccccchhhhhh
Confidence 999 99999999976543
No 115
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.05 E-value=0.4 Score=26.38 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=49.0
Q ss_pred HHHHHHHhC-C--CCCCHHHHH-HHHHHhCCCCCcceehHHHHHHHHHH--------------------HHHHHHHhhhh
Q 034092 26 QLKHAFAVG-N--LDFSLSVVQ-QMIRMYDFDRNGTMSFEEFVELNKFL--------------------LKVQHAFSDLE 81 (104)
Q Consensus 26 el~~~l~~~-~--~~~~~~~~~-~~~~~~d~~~~~~i~~~ef~~~~~~~--------------------~~~~~~f~~~d 81 (104)
-+++.|... . -.++.+.++ ..|...|.++++.++=-|.+..+.+. .-+..+.+--|
T Consensus 48 HIkeHLegki~~~a~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdD 127 (144)
T KOG4065|consen 48 HIKEHLEGKIEKVAKMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDD 127 (144)
T ss_pred HHHHHHhcccchhhhCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccc
Confidence 355555432 1 245556655 35778889999999988888887653 23566777778
Q ss_pred c-CCCccCHHHHHHH
Q 034092 82 R-GRGYLVPDNVYEV 95 (104)
Q Consensus 82 ~-~~g~i~~~e~~~~ 95 (104)
. ++|+|+..||...
T Consensus 128 fN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 128 FNGDGVIDYGEFLKR 142 (144)
T ss_pred cCCCceeeHHHHHhh
Confidence 8 9999999998654
No 116
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.00 E-value=0.054 Score=39.25 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=55.4
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
+...+..+|...|.+++|.|+..+....+.. .+++...+...+...+....|.+++.+|+..+..
T Consensus 281 d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 281 DKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 4567788999999999999999999888876 5577788889999999999999999988876643
No 117
>PLN02952 phosphoinositide phospholipase C
Probab=92.97 E-value=0.38 Score=33.71 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=37.3
Q ss_pred CCcceehHHHHHHHHHH--------HHHHHHHhhhhcCCCccCHHHHHHHHHhc
Q 034092 54 RNGTMSFEEFVELNKFL--------LKVQHAFSDLERGRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 54 ~~~~i~~~ef~~~~~~~--------~~~~~~f~~~d~~~g~i~~~e~~~~l~~~ 99 (104)
..|.++|++|..+.+.+ +++..+|..+..+.+.++.++|..+|...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~ 66 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLH 66 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHh
Confidence 35789999998776544 58999999997755689999999999763
No 118
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=0.13 Score=33.74 Aligned_cols=64 Identities=23% Similarity=0.221 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHH-HHHHHHHhCCCCCcceehHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSV-VQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~-~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
.+.++++|..+|+.++|+|+..-++.++...+...++.. +..+-...++..-|.|-..+|...+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~ 372 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEF 372 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccc
Confidence 468899999999999999999999999999986655543 3334444566666666666655443
No 119
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=92.56 E-value=0.84 Score=23.93 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHh-------CCC----CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAV-------GNL----DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-------~~~----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
.++++.+|..+ .|++|.++...+...|.. ++. ...+..++..|.... ....|+-++|+..+..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 46889999998 788999999988777762 221 224566666776652 3445888888887653
No 120
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.86 E-value=0.21 Score=34.12 Aligned_cols=31 Identities=16% Similarity=0.353 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHh
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAV 33 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~ 33 (104)
.+.+|..||...|.|++|.++..||+.++-.
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 4679999999999999999999999998863
No 121
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=91.60 E-value=0.26 Score=24.49 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=21.4
Q ss_pred HHHHHHHhhhhcCCCccCHHHHHHHHH
Q 034092 71 LKVQHAFSDLERGRGYLVPDNVYEVSF 97 (104)
Q Consensus 71 ~~~~~~f~~~d~~~g~i~~~e~~~~l~ 97 (104)
+.+.++|+.+..++++||.++|.+.|.
T Consensus 6 eqv~~aFr~lA~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 6 EQVEEAFRALAGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp HHHHHHHHHHCTSSSCEEHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHcC
Confidence 467888999933899999999988764
No 122
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=91.03 E-value=0.35 Score=33.68 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCC-CHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDF-SLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 5 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~-~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
+-+..+|..||.|++|-++..|++.++...+..+ ....-. .....+..|.+++..|+..+..
T Consensus 315 ~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~---~~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 315 RFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYK---DSTVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCccc---ccceecccceeehhhHHHHHHH
Confidence 4578899999999999999999999999875432 100000 0001235788999999887653
No 123
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=90.93 E-value=1.1 Score=22.28 Aligned_cols=48 Identities=19% Similarity=0.177 Sum_probs=24.6
Q ss_pred CcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 20 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
-.+++..+-.++.. .++.+.+..+...|+.=..+.|+.++|+..++..
T Consensus 7 p~~~F~~L~~~l~~---~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSK---HLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34555555544443 2333334444444433335567777777777655
No 124
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.91 E-value=3.1 Score=30.94 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=51.5
Q ss_pred CCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhC--CCCCcce-----ehHHHHHHHHHH---HHHHHHHhhhhc-CC
Q 034092 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD--FDRNGTM-----SFEEFVELNKFL---LKVQHAFSDLER-GR 84 (104)
Q Consensus 16 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d--~~~~~~i-----~~~ef~~~~~~~---~~~~~~f~~~d~-~~ 84 (104)
.+..|.|....+..++.+- -.+..++.....+. .+....| +++.|..++..+ .++..+|..+.. +.
T Consensus 159 vn~~grip~knI~k~F~~~---k~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcpR~eie~iF~ki~~~~k 235 (1189)
T KOG1265|consen 159 VNFEGRIPVKNIIKTFSAD---KKEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCPRPEIEEIFRKISGKKK 235 (1189)
T ss_pred ccccccccHHHHHHHhhcC---CchhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCCchhHHHHHHHhccCCC
Confidence 4567777777766665432 22244444444432 2222334 455555555544 789999999998 77
Q ss_pred CccCHHHHHHHHHhc
Q 034092 85 GYLVPDNVYEVSFDM 99 (104)
Q Consensus 85 g~i~~~e~~~~l~~~ 99 (104)
.++|.++|..++...
T Consensus 236 pylT~~ql~dfln~~ 250 (1189)
T KOG1265|consen 236 PYLTKEQLVDFLNKK 250 (1189)
T ss_pred ccccHHHHHHHHhhh
Confidence 999999999998753
No 125
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=90.23 E-value=2.6 Score=29.32 Aligned_cols=61 Identities=10% Similarity=0.212 Sum_probs=46.1
Q ss_pred CCHHHHH---HHHHHhCCCCCcceehHHHHHHHHHH---------HHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 38 FSLSVVQ---QMIRMYDFDRNGTMSFEEFVELNKFL---------LKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 38 ~~~~~~~---~~~~~~d~~~~~~i~~~ef~~~~~~~---------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
++.++++ .-|...+ ++.|.++..+...++... ++++.+....+. .+|.++.++|..++..+
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 4444443 4456666 888999999988887643 678888888888 89999999999866544
No 126
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.22 E-value=3.2 Score=30.40 Aligned_cols=61 Identities=23% Similarity=0.367 Sum_probs=48.4
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 6 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
+-.+.|..+ +-+.|+|+-.+-+.++-..+ ++...+.+++...|.+.||+++..||.-.|+.
T Consensus 17 K~~~qF~~L-kp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 17 KHDAQFGQL-KPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred HHHHHHhcc-CCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 334445544 34589999999999987776 55678889999999999999999999887764
No 127
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=88.00 E-value=4.8 Score=27.85 Aligned_cols=77 Identities=14% Similarity=0.154 Sum_probs=54.4
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHh---CC-----CCCcceehHHHHHHHH-------------
Q 034092 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY---DF-----DRNGTMSFEEFVELNK------------- 68 (104)
Q Consensus 10 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~---d~-----~~~~~i~~~ef~~~~~------------- 68 (104)
+|..+....++.+++-.|..+|++.|..-++..++.++..+ +. ...+.++-+.|..++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~sSI~lvSqALrkq 170 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFSSIVLVSQALRKQ 170 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhccchhHHHHHHhcC
Confidence 46666555579999999999999999988887777776554 22 2345688888877642
Q ss_pred --------HHHHHHHHHhhhhc-CCCc
Q 034092 69 --------FLLKVQHAFSDLER-GRGY 86 (104)
Q Consensus 69 --------~~~~~~~~f~~~d~-~~g~ 86 (104)
....+..+|+.... ..|.
T Consensus 171 mVIPdw~~Fts~I~tIFEscke~seG~ 197 (622)
T KOG0506|consen 171 MVIPDWEEFTSHIDTIFESCKESSEGK 197 (622)
T ss_pred ccCCcHHHHHHHHHHHHHHHHhcCCcc
Confidence 11467777877776 5554
No 128
>PLN02228 Phosphoinositide phospholipase C
Probab=87.81 E-value=5.7 Score=28.02 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=47.0
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCC--CCCHHHHHHHHHHhCCC----CCcceehHHHHHHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDFD----RNGTMSFEEFVELNK 68 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~~----~~~~i~~~ef~~~~~ 68 (104)
+...++..+|..+-.+ +.++.++|...|..... ..+.+.+..++..+... ..+.++.+.|...+.
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhc
Confidence 3567889999888643 57999999999987643 34566777888777543 235688888887764
No 129
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=87.26 E-value=5.6 Score=28.85 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCCCCcceehHHHHHHHHHH------HHHHHHHhhhhc-CCCccCHHHHHHHHHhccc
Q 034092 40 LSVVQQMIRMYDFDRNGTMSFEEFVELNKFL------LKVQHAFSDLER-GRGYLVPDNVYEVSFDMVL 101 (104)
Q Consensus 40 ~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~~ 101 (104)
...+..++...|.+.+|.+++.+-..++..+ ..+...|+-.+. +++.+...++..+....+.
T Consensus 135 ~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~ 203 (746)
T KOG0169|consen 135 EHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK 203 (746)
T ss_pred HHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc
Confidence 4557788999999999999999988887654 456777888888 9999999999888776643
No 130
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=85.76 E-value=1.5 Score=24.47 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=17.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhC
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHAFAVG 34 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~l~~~ 34 (104)
+..++..||++++|.|..-.++.++..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 4456777788888888888887777554
No 131
>PLN02230 phosphoinositide phospholipase C 4
Probab=85.49 E-value=7.4 Score=27.68 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCC---CCCHHHHHHHHHHhCCC-------CCcceehHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL---DFSLSVVQQMIRMYDFD-------RNGTMSFEEFVELNK 68 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~-------~~~~i~~~ef~~~~~ 68 (104)
...++..+|..+-.++ +.++.++|...|..... ..+.+.+..++..+... ..+.++.+.|..++.
T Consensus 27 p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~ 101 (598)
T PLN02230 27 PVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLF 101 (598)
T ss_pred CcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHc
Confidence 4578999999996444 89999999999988653 23556666666544211 234588899888764
No 132
>PLN02222 phosphoinositide phospholipase C 2
Probab=85.40 E-value=7.2 Score=27.63 Aligned_cols=63 Identities=10% Similarity=0.130 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCC--CCCHHHHHHHHHHhCC-CCCcceehHHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNL--DFSLSVVQQMIRMYDF-DRNGTMSFEEFVELNK 68 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~--~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~~~ 68 (104)
..++..+|..+.. ++.++..+|...|..... ..+.+.++.++..+.. ...+.++++.|..++.
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~ 89 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLF 89 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhc
Confidence 4588999999864 479999999999987743 3466777778777532 2345688999888764
No 133
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=85.28 E-value=4.1 Score=21.78 Aligned_cols=60 Identities=13% Similarity=0.087 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHhCCCCCcceehHHHHHHHHHH---HHHHHHHhhhh---c-CCCccCHHHHHHHHHhcc
Q 034092 39 SLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---LKVQHAFSDLE---R-GRGYLVPDNVYEVSFDMV 100 (104)
Q Consensus 39 ~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~---~~~~~~f~~~d---~-~~g~i~~~e~~~~l~~~~ 100 (104)
....++.-|..+.. +|.+....|-.++... +-..++|..+. . ..+.|+.+|+..++.++.
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 46667777777655 7899999999988643 22334444443 3 567799999999988763
No 134
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=84.79 E-value=4.6 Score=21.97 Aligned_cols=45 Identities=7% Similarity=-0.008 Sum_probs=38.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhC
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 51 (104)
+...|-.++.-++..-+.++++.+|...|.....+.++.++....
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~ 47 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK 47 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc
Confidence 445666777888888999999999999999999999999998874
No 135
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=84.26 E-value=4.3 Score=26.48 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=29.6
Q ss_pred HHhhCCCCCCcccHHHHHHHHHh----CCCCC-CHHHH-----------HHHHHHhCCCCCcceehHHHHHHHH
Q 034092 11 FDRVDSEKTGSIAAAQLKHAFAV----GNLDF-SLSVV-----------QQMIRMYDFDRNGTMSFEEFVELNK 68 (104)
Q Consensus 11 f~~~D~~~~g~i~~~el~~~l~~----~~~~~-~~~~~-----------~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (104)
|...|.|++|.++-.++..++.. +..+- ..+.+ ..+++..|.+.+.-|+.++|+.-..
T Consensus 250 F~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 250 FALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred eeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 44456667777777776655542 11111 11111 1234555666666666666666544
No 136
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=83.71 E-value=4.8 Score=21.30 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRM 49 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 49 (104)
+.+.+...|..+ ...++..+++.+.+.+| +++..+..+-..
T Consensus 2 ~~~~l~~~f~~i----~~~V~~~~Wk~laR~LG--Lse~~I~~i~~~ 42 (96)
T cd08315 2 PQETLRRSFDHF----IKEVPFDSWNRLMRQLG--LSENEIDVAKAN 42 (96)
T ss_pred cHhHHHHHHHHH----HHHCCHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 456777777776 34578889999999888 666666555433
No 137
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=83.54 E-value=3 Score=27.16 Aligned_cols=24 Identities=4% Similarity=0.149 Sum_probs=17.6
Q ss_pred HHHHhhhhc-CCCccCHHHHHHHHH
Q 034092 74 QHAFSDLER-GRGYLVPDNVYEVSF 97 (104)
Q Consensus 74 ~~~f~~~d~-~~g~i~~~e~~~~l~ 97 (104)
..+.+..|. .+..||++||...-.
T Consensus 299 EHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 299 EHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred HHHHHhcccchhhhhhHHHHHhhhh
Confidence 456777888 888889988865543
No 138
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=82.75 E-value=1.6 Score=23.98 Aligned_cols=31 Identities=10% Similarity=0.273 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHhCCCCCcceehHHHHHHHH
Q 034092 38 FSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (104)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (104)
++++..+.++..+-.+..|.+.|.+|+.-+.
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 5778888999999889999999999998765
No 139
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=82.69 E-value=2 Score=16.10 Aligned_cols=15 Identities=27% Similarity=0.384 Sum_probs=8.8
Q ss_pred CCCCCCcccHHHHHH
Q 034092 15 DSEKTGSIAAAQLKH 29 (104)
Q Consensus 15 D~~~~g~i~~~el~~ 29 (104)
|.|++|.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 456677776666543
No 140
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=82.31 E-value=2.3 Score=17.81 Aligned_cols=19 Identities=16% Similarity=-0.031 Sum_probs=14.2
Q ss_pred ccCHHHHHHHHHhccccCC
Q 034092 86 YLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~s 104 (104)
.++.+++...|+..|++.|
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4677888888888887754
No 141
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=81.57 E-value=14 Score=25.09 Aligned_cols=83 Identities=17% Similarity=0.080 Sum_probs=55.2
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceeh---HHHHHHHHHHHHHHHHHhhhhc-CCCc---cCH
Q 034092 17 EKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSF---EEFVELNKFLLKVQHAFSDLER-GRGY---LVP 89 (104)
Q Consensus 17 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~---~ef~~~~~~~~~~~~~f~~~d~-~~g~---i~~ 89 (104)
.+...+.+..|..+|.......+.-+...+=.-.|...++.|+- +-|-.++.-...+.+-|+.+.. +.|+ +|.
T Consensus 186 g~k~ivPW~~F~q~L~~~Hpi~~gleAmaLktTIDLtcnd~iS~FEFDvFTRLFqPw~tllkNWq~LavtHPGYmAFLTY 265 (563)
T KOG1785|consen 186 GKKTIVPWKTFRQALHKVHPISSGLEAMALKTTIDLTCNDFISNFEFDVFTRLFQPWKTLLKNWQTLAVTHPGYMAFLTY 265 (563)
T ss_pred CCcccccHHHHHHHHHhcCCCcchhHHHHhhceeccccccceeeehhhhHHHhhccHHHHHHhhhhhhccCCceeEEeeH
Confidence 34567899999999987754444444334444567677777764 4444444444666677777777 7777 689
Q ss_pred HHHHHHHHhc
Q 034092 90 DNVYEVSFDM 99 (104)
Q Consensus 90 ~e~~~~l~~~ 99 (104)
+|+..-|...
T Consensus 266 DEVk~RLqk~ 275 (563)
T KOG1785|consen 266 DEVKARLQKY 275 (563)
T ss_pred HHHHHHHHHH
Confidence 9988877654
No 142
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.62 E-value=14 Score=27.80 Aligned_cols=67 Identities=19% Similarity=0.253 Sum_probs=53.0
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCC----------CCCCHHHHHHHHHHhCCCC----CcceehHHHHHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGN----------LDFSLSVVQQMIRMYDFDR----NGTMSFEEFVELN 67 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~----------~~~~~~~~~~~~~~~d~~~----~~~i~~~ef~~~~ 67 (104)
+.+.++.++|..+-.++.-+++..++...|+.-. .......++.+++.+..+. .|.++-+.|+..+
T Consensus 218 cpR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl 297 (1189)
T KOG1265|consen 218 CPRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYL 297 (1189)
T ss_pred CCchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHh
Confidence 4567899999999888889999999999998432 2345677888998887654 5788999888765
Q ss_pred H
Q 034092 68 K 68 (104)
Q Consensus 68 ~ 68 (104)
.
T Consensus 298 ~ 298 (1189)
T KOG1265|consen 298 M 298 (1189)
T ss_pred h
Confidence 3
No 143
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=80.17 E-value=2.3 Score=17.96 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=12.2
Q ss_pred cCHHHHHHHHHhccccCC
Q 034092 87 LVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 87 i~~~e~~~~l~~~~~~~s 104 (104)
++..++.+.|+..|++.+
T Consensus 4 l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 4 LTVAELKEELKERGLSTS 21 (35)
T ss_dssp SHHHHHHHHHHHTTS-ST
T ss_pred CcHHHHHHHHHHCCCCCC
Confidence 566777788877777653
No 144
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=79.81 E-value=1.9 Score=33.87 Aligned_cols=66 Identities=11% Similarity=0.039 Sum_probs=46.4
Q ss_pred chHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCC----HHHHHHHHHHhCCCCCcceehHHHHHHHH
Q 034092 2 ENTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFS----LSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (104)
Q Consensus 2 ~~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~----~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (104)
.+.+++.++|..+|++.+|.|...++...++.+..++. .+. +.+.-.+....++.|.+.+-+..+.
T Consensus 1414 ~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~-kli~mdmp~~~gd~V~f~d~L~aL~ 1483 (1592)
T KOG2301|consen 1414 DDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR-KLISMDLPMVSGDRVHCLDILFALT 1483 (1592)
T ss_pred ccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc-eeeeeecCcCCCCeeehhhHHHHHH
Confidence 35678999999999999999999999999998754321 111 2222223344667788887766654
No 145
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=79.76 E-value=17 Score=26.83 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=44.7
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHH
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVEL 66 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 66 (104)
+..+++.||+.++|.|..-+|+..+-.++.....+.++.+|.....++. .++-..|-.+
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF~~vA~~~s-q~~q~~l~lL 530 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLFKQVASSTS-QCDQRRLGLL 530 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHHHHHcCchh-hHHHHHHHHH
Confidence 4567889999999999999999999988877778888889988865543 3333334333
No 146
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.01 E-value=16 Score=23.18 Aligned_cols=66 Identities=15% Similarity=0.076 Sum_probs=45.4
Q ss_pred HHHHHHHHHhh-CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 4 TAVLREWFDRV-DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 4 ~~~~~~~f~~~-D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
...+..+|..+ |++.+..|...-+...++.+|..+..-.+--+--.+....-+..+.++|+.-+..
T Consensus 63 ~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~ 129 (260)
T KOG3077|consen 63 EKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTA 129 (260)
T ss_pred HHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 34556666665 6666678999999999999998765544333333445666778889999886543
No 147
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=74.99 E-value=8.2 Score=28.74 Aligned_cols=91 Identities=21% Similarity=0.241 Sum_probs=56.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHH-HHHHHHHHhCCCCCcceehHHHHHHHHHH-----HHHHHHHh---
Q 034092 8 REWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLS-VVQQMIRMYDFDRNGTMSFEEFVELNKFL-----LKVQHAFS--- 78 (104)
Q Consensus 8 ~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~-~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----~~~~~~f~--- 78 (104)
+..+...|......|+.++++..|...+..++.. .+.+-+.....+ .+.++|++|..+...+ ..+..-|.
T Consensus 147 rk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~-k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~ 225 (1267)
T KOG1264|consen 147 RKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGAR-KDDLSFEQFHLLYKKLMFSQQKAILLEFKKDF 225 (1267)
T ss_pred HhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhc-cccccHHHHHHHHHHHhhccchhhhhcccchh
Confidence 3445555666777899999999999887766543 343444444333 4669999999887644 11111111
Q ss_pred ---hhhc-CCCccCHHHHHHHHHhc
Q 034092 79 ---DLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 79 ---~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
.-+. ..-.++..+|.++|...
T Consensus 226 ~~~~~~~~d~~vV~~~ef~rFL~~~ 250 (1267)
T KOG1264|consen 226 ILGNTDRPDASVVYLQEFQRFLIHE 250 (1267)
T ss_pred hhcCCCCccceEeeHHHHHHHHHhh
Confidence 1111 23458889999888654
No 148
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=74.51 E-value=8.9 Score=18.98 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCccee
Q 034092 22 IAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMS 59 (104)
Q Consensus 22 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~ 59 (104)
++-.++..++...+..++..++..+++.-+..+--.++
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~ 51 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECS 51 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccC
Confidence 34457888888888888888888888775544333333
No 149
>PLN02228 Phosphoinositide phospholipase C
Probab=73.85 E-value=30 Score=24.70 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH--------HHHHHHHhhhhc-----CCCccCHHHHHHHHHhc
Q 034092 37 DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------LKVQHAFSDLER-----GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 37 ~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------~~~~~~f~~~d~-----~~g~i~~~e~~~~l~~~ 99 (104)
..+..++..+|..+..+ +.++.++|...+... +....++..+.+ ..|.++.+.|..+|.+.
T Consensus 20 ~~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 20 REPPVSIKRLFEAYSRN--GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCCcHHHHHHHHHhcCC--CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 44678888899888643 579999998887643 345566666643 24679999999988653
No 150
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=73.41 E-value=8.7 Score=18.75 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=28.8
Q ss_pred CCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC
Q 034092 18 KTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDR 54 (104)
Q Consensus 18 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 54 (104)
.++.++..++...|..-+..++...++...+.++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3567888888888888888888888888877776553
No 151
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=73.35 E-value=13 Score=22.20 Aligned_cols=36 Identities=14% Similarity=0.150 Sum_probs=29.1
Q ss_pred CCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhC
Q 034092 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (104)
Q Consensus 16 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 51 (104)
.|.+|+++.+++...++.-+...+.+.+..++..-+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 467899999999999876566788888888876654
No 152
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=73.33 E-value=9.6 Score=22.19 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=21.1
Q ss_pred HHhhhhc-CCCccCHHHHHHHHHhcccc
Q 034092 76 AFSDLER-GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 76 ~f~~~d~-~~g~i~~~e~~~~l~~~~~~ 102 (104)
+=.++.. +.-+|+.+++.+++..+|+.
T Consensus 75 AsekC~~EkRKTIngdDllwAm~tLGFe 102 (168)
T KOG0869|consen 75 ASEKCQREKRKTINGDDLLWAMSTLGFE 102 (168)
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHcCcH
Confidence 3445556 77889999999999999874
No 153
>KOG0871 consensus Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=72.65 E-value=11 Score=21.79 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhc-CCCccCHHHHHHHHHhcccc
Q 034092 62 EFVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 62 ef~~~~~~~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~~~ 102 (104)
+|++++. ..+-+.++. ...+|..+.+..+|..+||.
T Consensus 46 EFI~liS-----sEAneic~~e~KKTIa~EHV~KALe~LgF~ 82 (156)
T KOG0871|consen 46 EFINLIS-----SEANEICNKEAKKTIAPEHVIKALENLGFG 82 (156)
T ss_pred HHHHHHH-----HHHHHHHhHHhcccCCHHHHHHHHHHcchH
Confidence 5665555 234455666 67779999988888888874
No 154
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=72.10 E-value=14 Score=20.19 Aligned_cols=28 Identities=14% Similarity=0.110 Sum_probs=20.2
Q ss_pred HHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 72 KVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 72 ~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
+-....+..+. ..|.|+......+++.+
T Consensus 70 EK~~~~~~i~~yr~g~i~l~~~l~~L~~~ 98 (117)
T PF08349_consen 70 EKQHFLDLIEDYREGKIPLSVPLTLLKHL 98 (117)
T ss_pred HHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 44555666677 88889888887777665
No 155
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=71.83 E-value=17 Score=21.00 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=33.2
Q ss_pred CcceehHHHHHHHHH---------HHHHHHHHhhhhc-CCCccCHHHHHHHHHhcc
Q 034092 55 NGTMSFEEFVELNKF---------LLKVQHAFSDLER-GRGYLVPDNVYEVSFDMV 100 (104)
Q Consensus 55 ~~~i~~~ef~~~~~~---------~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~ 100 (104)
...++-..|..+++. ...+.-+|..+-. +...|+.++|..+|..++
T Consensus 16 ~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA 71 (154)
T PF05517_consen 16 GTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELA 71 (154)
T ss_dssp SSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHH
Confidence 445777777777753 2677888988766 777799999999987653
No 156
>PLN02223 phosphoinositide phospholipase C
Probab=70.89 E-value=34 Score=24.20 Aligned_cols=65 Identities=6% Similarity=0.038 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHH---HhCC--CCCCHHHHHHHHHHhCCCC--------CcceehHHHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAF---AVGN--LDFSLSVVQQMIRMYDFDR--------NGTMSFEEFVELNK 68 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l---~~~~--~~~~~~~~~~~~~~~d~~~--------~~~i~~~ef~~~~~ 68 (104)
..+.++.+|..+- +++|.++...+...| .... ...+.+.++.++..+-... .+.++.+.|..++.
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 4567888999884 667889999988888 4432 2455666666665543221 24588888887764
No 157
>PLN02222 phosphoinositide phospholipase C 2
Probab=70.89 E-value=36 Score=24.39 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=42.6
Q ss_pred CCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH--------HHHHHHHhhhhc--CCCccCHHHHHHHHHh
Q 034092 38 FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL--------LKVQHAFSDLER--GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~--------~~~~~~f~~~d~--~~g~i~~~e~~~~l~~ 98 (104)
.+..++..+|..+.. ++.++.++|...+... +....++..+.. ..+.++.+.|..+|.+
T Consensus 22 ~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 22 EAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 355688888888854 3689999998887643 345556666543 5667999999999865
No 158
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=70.55 E-value=5.8 Score=22.00 Aligned_cols=83 Identities=10% Similarity=0.161 Sum_probs=41.2
Q ss_pred CCcccHHHHHHHHHhC--CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH---HH----HHHHHHhhhhcCCCccCH
Q 034092 19 TGSIAAAQLKHAFAVG--NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF---LL----KVQHAFSDLERGRGYLVP 89 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~--~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~---~~----~~~~~f~~~d~~~g~i~~ 89 (104)
+|.++..|...+...+ ....+......+...++.......++.+++..+.. .+ -+..++.... -||.++.
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~r~~ll~~l~~ia~-ADG~~~~ 115 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPEEREDLLRMLIAIAY-ADGEISP 115 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HHHHHHHHHHHHHHCT-CTTC-SC
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchHHHHHHHHHHHHHHh-cCCCCCH
Confidence 6888888877665544 22334444555555554333345677777665533 11 2223333333 5677777
Q ss_pred HH---HHHHHHhcccc
Q 034092 90 DN---VYEVSFDMVLT 102 (104)
Q Consensus 90 ~e---~~~~l~~~~~~ 102 (104)
.| +..+...+|++
T Consensus 116 ~E~~~l~~ia~~L~i~ 131 (140)
T PF05099_consen 116 EEQEFLRRIAEALGIS 131 (140)
T ss_dssp CHHHHHHHHHHHCTS-
T ss_pred HHHHHHHHHHHHcCCC
Confidence 66 44444444543
No 159
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=70.41 E-value=9.7 Score=18.40 Aligned_cols=26 Identities=12% Similarity=0.123 Sum_probs=20.7
Q ss_pred cccHHHHHHHHHhCCCCCCHHHHHHH
Q 034092 21 SIAAAQLKHAFAVGNLDFSLSVVQQM 46 (104)
Q Consensus 21 ~i~~~el~~~l~~~~~~~~~~~~~~~ 46 (104)
.|+.++|..+|+.....++.+.+...
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 48899999999998888888877653
No 160
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.08 E-value=6.3 Score=26.37 Aligned_cols=30 Identities=7% Similarity=0.153 Sum_probs=25.5
Q ss_pred HHHHHHHhhhhc-CCCccCHHHHHHHHHhcc
Q 034092 71 LKVQHAFSDLER-GRGYLVPDNVYEVSFDMV 100 (104)
Q Consensus 71 ~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~ 100 (104)
+.++++|..+|+ +.|+|+-.-+..++....
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N 339 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALN 339 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhc
Confidence 579999999999 999999888888776654
No 161
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=69.87 E-value=16 Score=19.89 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=36.2
Q ss_pred hhCCCCCCcccHHHHHHHHHhC----------CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 13 RVDSEKTGSIAAAQLKHAFAVG----------NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 13 ~~D~~~~g~i~~~el~~~l~~~----------~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
.||...+.+|+.++++..+..- |..++...+-+++......+...++-.-+.+++
T Consensus 11 LYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~~L~qlI 75 (107)
T TIGR01848 11 LYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTDFLTQII 75 (107)
T ss_pred ccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 5788999999999999998842 334556666666666555555545544333443
No 162
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=69.09 E-value=5.2 Score=26.31 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCCCcceehHHHHHHHHHH-------HHHHHHHhhhhc-CCCccCHHHHHHHHH
Q 034092 43 VQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLER-GRGYLVPDNVYEVSF 97 (104)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~d~-~~g~i~~~e~~~~l~ 97 (104)
+.-.|..+|.+.++.|...|+..+=+.+ .=.+..|+..|- +|..|+++|++.-|.
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~ 397 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLG 397 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhc
Confidence 3345777888888888877765543222 225577899999 999999999876554
No 163
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=69.03 E-value=9.5 Score=17.03 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=18.9
Q ss_pred HHHHHHHHhhhhc---CCCccCHHHHHHHHHh
Q 034092 70 LLKVQHAFSDLER---GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 70 ~~~~~~~f~~~d~---~~g~i~~~e~~~~l~~ 98 (104)
+..+..+|..|.. +..+++..||...+..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 3455666766663 4666788888777654
No 164
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=68.70 E-value=15 Score=21.99 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=24.2
Q ss_pred CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCC
Q 034092 15 DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDF 52 (104)
Q Consensus 15 D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 52 (104)
..+.+|+++.+++...+..-+..++.+.++.++...++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 35678999999999999887777888998888876543
No 165
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=67.31 E-value=18 Score=19.46 Aligned_cols=60 Identities=10% Similarity=0.219 Sum_probs=37.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCcceehHHHHHHHHHH
Q 034092 6 VLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDF---DRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 6 ~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~---~~~~~i~~~ef~~~~~~~ 70 (104)
.+..-|..+-. +|.++...|..++ |..-+.+....+|..+-. -....|+.+|+...+..+
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qi 93 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQI 93 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHH
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHh
Confidence 34455666655 8999999999887 666667777777766531 224678888887776644
No 166
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=66.88 E-value=35 Score=24.70 Aligned_cols=65 Identities=17% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhC---CC-----CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVG---NL-----DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~---~~-----~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
..+++-+|...|. .+|.++.+++..++... +. ....+....+++..+.+..+.+.++++..++..
T Consensus 17 d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~~ 89 (646)
T KOG0039|consen 17 DDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLLQ 89 (646)
T ss_pred hHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHHh
Confidence 3455566666665 56666666655555432 11 111222333444454444555555555555443
No 167
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=65.18 E-value=18 Score=18.89 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=45.4
Q ss_pred CCcccHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH-------HHHHHHHhhhhcCCCccCH
Q 034092 19 TGSIAAAQLKHAFAVGN--LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-------LKVQHAFSDLERGRGYLVP 89 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-------~~~~~~f~~~d~~~g~i~~ 89 (104)
+|.++..|...+-..+. ..++......+...+........++.+|...+... .-+..+|+..- -||.++.
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA~-ADG~~~~ 91 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVAY-ADGELDE 91 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hcCCCCH
Confidence 68888888666554331 35666777777777765555567888888776532 11222232222 6788888
Q ss_pred HHHH
Q 034092 90 DNVY 93 (104)
Q Consensus 90 ~e~~ 93 (104)
.|-.
T Consensus 92 ~E~~ 95 (104)
T cd07313 92 YEEH 95 (104)
T ss_pred HHHH
Confidence 8743
No 168
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=65.14 E-value=15 Score=17.97 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=18.5
Q ss_pred hhCCCCCCcccHHHHHHHHHh
Q 034092 13 RVDSEKTGSIAAAQLKHAFAV 33 (104)
Q Consensus 13 ~~D~~~~g~i~~~el~~~l~~ 33 (104)
.||...+.+|+.+++..++..
T Consensus 11 LYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 11 LYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred cccCCCceeEeHHHHHHHHHC
Confidence 578899999999999999874
No 169
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=64.63 E-value=14 Score=18.78 Aligned_cols=45 Identities=7% Similarity=0.272 Sum_probs=26.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC
Q 034092 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD 53 (104)
Q Consensus 5 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 53 (104)
..++++...- ...|+|++.++..+|.... ++...+..++..+...
T Consensus 7 ~~i~~Li~~g--K~~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 7 EAIKKLIEKG--KKKGYLTYDEINDALPEDD--LDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HHHHHHHHHH--HHHSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH--hhcCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHHC
Confidence 3455544442 2468999999999987433 6667788887777543
No 170
>PRK00523 hypothetical protein; Provisional
Probab=63.12 E-value=18 Score=18.16 Aligned_cols=32 Identities=16% Similarity=0.154 Sum_probs=26.4
Q ss_pred CCcccHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 034092 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 50 (104)
+=.|+.+-++..+.++|..+++..++++.+..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45688888888888999999999888887765
No 171
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=62.66 E-value=24 Score=19.39 Aligned_cols=43 Identities=9% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhC
Q 034092 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (104)
Q Consensus 9 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 51 (104)
..|-..-.-++..++..+++.+|...|..+....+..+++.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~ 49 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLE 49 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 3344445566777999999999999999999888888888773
No 172
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=62.21 E-value=18 Score=17.75 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=26.8
Q ss_pred CCcccHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 034092 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 50 (104)
+-.|+.+.++..+..+|..+++..++++.+..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45688888999999999999999988887665
No 173
>PF03556 Cullin_binding: Cullin binding; InterPro: IPR005176 The eukaryotic defective in cullin neddylation (DCN) protein family, may contribute to neddylation of cullin components of SCF-type E3 ubiquitin ligase complexes. These multi-protein complexes are required for polyubiquitination and subsequent degradation of target proteins by the 26S proteasome []. Proteins in the DCN family include: Yeast DCN1. Vertebrate DCN1-like protein 1. Vertebrate DCN1-like protein 2. Vertebrate DCN1-like protein 4. This entry represents a domain found within DCN family proteins. Its function is unknown but it has been suggested that it has the features of a basic helix-loop-helix leucine zipper (bHLH-ZIP) domain [].It is often found in association with a UBA-like domain (IPR009060 from INTERPRO).; PDB: 3TDI_A 2IS9_A 3O6B_E 3O2P_A 3BQ3_A 3TDZ_A 3TDU_B.
Probab=61.98 E-value=25 Score=19.35 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=46.3
Q ss_pred HHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHHHHhhhhc-CCCccCH
Q 034092 11 FDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-GRGYLVP 89 (104)
Q Consensus 11 f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d~-~~g~i~~ 89 (104)
|...-..+...++.+.-..+...+-.......+...++-+.......|+.+.+..++.....+..-+..+|. +.=..-.
T Consensus 30 F~~~~~~~qr~l~~e~Ai~~W~llf~~~~~~~l~~w~~Fl~~~~~k~IskD~W~~~l~F~~~~~~dls~Yde~~AWP~li 109 (117)
T PF03556_consen 30 FDFAREEGQRSLPLETAIAYWRLLFSGRFFPLLDSWIEFLEEKYKKAISKDTWNQFLDFFKTVDEDLSNYDEEGAWPSLI 109 (117)
T ss_dssp HHHHS-TT-SSEEHHHHHHHHHHHTTTTSSCCHHHHHHHHHHCT-SEEEHHHHHHHHHHHHH-HCCHCC--TTSSS-HHH
T ss_pred HHHhCCcccCCCCHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcCCcCcChhHHHHHHHHHHhcCccccCCCCCCCCcHHH
Confidence 333344445667776555555543221112334445555544456679999888888777666667777776 5555666
Q ss_pred HHHHHHH
Q 034092 90 DNVYEVS 96 (104)
Q Consensus 90 ~e~~~~l 96 (104)
+||...+
T Consensus 110 DeFVe~~ 116 (117)
T PF03556_consen 110 DEFVEWL 116 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7766554
No 174
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=61.61 E-value=12 Score=22.55 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhhhc-CCCccCHHHHHHHHHhccc
Q 034092 63 FVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEVSFDMVL 101 (104)
Q Consensus 63 f~~~~~~~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~~ 101 (104)
+..++++.+..+++|-.||+ +--..+.+++.+.+.+.|+
T Consensus 47 W~tVL~KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gI 86 (188)
T COG2818 47 WLTVLKKREAFREAFHGFDPEKVAAMTEEDVERLLADAGI 86 (188)
T ss_pred HHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcch
Confidence 34556667889999999998 8777888888888877654
No 175
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=60.42 E-value=41 Score=21.37 Aligned_cols=50 Identities=6% Similarity=0.097 Sum_probs=28.2
Q ss_pred CCcccHHHHHHHHHhCC--CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 19 TGSIAAAQLKHAFAVGN--LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~~--~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
+|.++..|+. +.+.+. ..++.+.-+.+...+........++.+|+..+..
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHH
Confidence 7889999887 334331 3445555223333333333344778888877653
No 176
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=59.83 E-value=32 Score=19.90 Aligned_cols=44 Identities=9% Similarity=0.195 Sum_probs=32.5
Q ss_pred cceehHHHHHHHHHHHHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 56 GTMSFEEFVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 56 ~~i~~~ef~~~~~~~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
..-..+.|...+..+..+..-....|. +.+|+|..|++.+.-.+
T Consensus 54 ~~~~l~gW~q~~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i 98 (148)
T PF12486_consen 54 PAPQLDGWHQGMTQLQQLADRLNQLEEQRGKYMTISELKTAVYQI 98 (148)
T ss_pred CchhhchHHHHHHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHH
Confidence 344566777777788888888888888 77789998887765443
No 177
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=59.82 E-value=24 Score=18.48 Aligned_cols=72 Identities=15% Similarity=0.109 Sum_probs=35.7
Q ss_pred CCcccHHHHHHHHHhCC--C---CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH---HHHHHHHhhhh--c-CCCcc
Q 034092 19 TGSIAAAQLKHAFAVGN--L---DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---LKVQHAFSDLE--R-GRGYL 87 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~~--~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~---~~~~~~f~~~d--~-~~g~i 87 (104)
+|.++..|...+.+.+. . ......+..++......- ...+..++...+... +.-..++...- . -+|.+
T Consensus 16 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ia~aDG~~ 94 (111)
T cd07176 16 DGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLALL-RPEGLAALLKAAAKLLPPELRETAFAVAVDIAAADGEV 94 (111)
T ss_pred ccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccCCC
Confidence 68888888777666553 1 233445555554432220 123445555554432 22222222221 1 57778
Q ss_pred CHHH
Q 034092 88 VPDN 91 (104)
Q Consensus 88 ~~~e 91 (104)
+..|
T Consensus 95 ~~~E 98 (111)
T cd07176 95 DPEE 98 (111)
T ss_pred CHHH
Confidence 8766
No 178
>COG3636 Predicted transcriptional regulator [Transcription]
Probab=58.16 E-value=20 Score=19.15 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=23.0
Q ss_pred HHHHhhhhcCCCccCHHHHHHHHHhccccCC
Q 034092 74 QHAFSDLERGRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 74 ~~~f~~~d~~~g~i~~~e~~~~l~~~~~~~s 104 (104)
+.+|+.+. ..|.-+.+-+..+++.+|++++
T Consensus 64 e~LYkaLS-~~GNPtf~Til~V~kAlG~rl~ 93 (100)
T COG3636 64 EGLYKALS-PGGNPTFDTILAVLKALGLRLS 93 (100)
T ss_pred HHHHHHhC-CCCCCcHHHHHHHHHHcCceee
Confidence 35566666 4566888999999999999864
No 179
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=56.43 E-value=15 Score=22.05 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=33.8
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHH
Q 034092 3 NTAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQ 45 (104)
Q Consensus 3 ~~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~ 45 (104)
..+.++++|..||+++--..+-.++..+|...+.--+...++.
T Consensus 53 KRe~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A 95 (188)
T COG2818 53 KREAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKA 95 (188)
T ss_pred hHHHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHH
Confidence 3567899999999999899999999999988776555444433
No 180
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=55.36 E-value=33 Score=18.70 Aligned_cols=42 Identities=12% Similarity=0.074 Sum_probs=33.3
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhC
Q 034092 10 WFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (104)
Q Consensus 10 ~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 51 (104)
.|-..-..++..++..+++.+|...|..+....+..+++.+.
T Consensus 6 AylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~ 47 (109)
T cd05833 6 AYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELE 47 (109)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHc
Confidence 344444566778999999999999999888888888877763
No 181
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=55.25 E-value=29 Score=18.06 Aligned_cols=49 Identities=16% Similarity=0.091 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHH
Q 034092 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (104)
Q Consensus 20 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (104)
..++..||...-+..+.+++.+.+..+......+.-...+-++=..++.
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llk 61 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLK 61 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 4588899999999999999999999988888655444344444333433
No 182
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=54.83 E-value=7.6 Score=23.69 Aligned_cols=25 Identities=12% Similarity=0.328 Sum_probs=14.0
Q ss_pred HHHHHHHhCCCCCcceehHHHHHHH
Q 034092 43 VQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
....|+-+|.++++.|+.+||-..+
T Consensus 224 ~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 224 TTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred chhhhhcccCCCCCceeHHHhhccc
Confidence 3445555666666666666654443
No 183
>PHA01351 putative minor structural protein
Probab=54.63 E-value=88 Score=23.36 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=23.9
Q ss_pred HHHhhhhc--CCCccCHHHHHHHHHhccccCC
Q 034092 75 HAFSDLER--GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 75 ~~f~~~d~--~~g~i~~~e~~~~l~~~~~~~s 104 (104)
.+|+.+.+ ..|+.+..+....++..|++++
T Consensus 483 ll~~~l~sl~skGi~DqkkIke~LKa~gfnks 514 (1070)
T PHA01351 483 LLLRQLQQIVSLGIFDQKKIKEELKANKFNEQ 514 (1070)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHhcCccHH
Confidence 44555555 7899999999999999998753
No 184
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=54.52 E-value=18 Score=18.74 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=9.2
Q ss_pred HHHHHHHhhhhc-CCCcc
Q 034092 71 LKVQHAFSDLER-GRGYL 87 (104)
Q Consensus 71 ~~~~~~f~~~d~-~~g~i 87 (104)
.++..+|+.+-. ++..+
T Consensus 59 ~EL~EA~rl~~~n~~~~l 76 (83)
T cd06404 59 MELEEAFRLYELNKDSEL 76 (83)
T ss_pred HHHHHHHHHHHhcCcccE
Confidence 455666666655 44333
No 185
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=54.02 E-value=23 Score=16.35 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=20.9
Q ss_pred CCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCC
Q 034092 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFD 53 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~ 53 (104)
+|.++..+++..+ +.+...+-.+.+.+|..
T Consensus 8 ~~~itv~~~rd~l-----g~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLL-----GLSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHH-----TS-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHH-----CccHHHHHHHHHHHhcc
Confidence 6788888888877 36667776777777644
No 186
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=53.87 E-value=31 Score=23.02 Aligned_cols=58 Identities=17% Similarity=0.056 Sum_probs=40.4
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 9 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
.....+|..+.|.++..-.+.++..++.+.-.+.++.+|.... +..|.+.+..|.+++
T Consensus 114 flLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~is-ds~gim~~i~~~~fl 171 (434)
T KOG4301|consen 114 FLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLIS-DSRGIMQEIQRDQFL 171 (434)
T ss_pred HHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHc-cchHHHHHHHHHHHH
Confidence 3445678889999999999999988876666677787887774 335655544444443
No 187
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=53.81 E-value=30 Score=17.77 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=28.3
Q ss_pred CcccHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 20 GSIAAAQLKHAFAVG-NLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 20 g~i~~~el~~~l~~~-~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
|.-...--...|+.. |..++.+.++.+-+.++......|+|+|+|.+.
T Consensus 27 ~~HPl~~Q~~WLskeRgG~IP~~V~~sl~kL~~La~~N~v~feeLc~YA 75 (82)
T PF11020_consen 27 DHHPLQFQATWLSKERGGQIPEKVMDSLSKLYKLAKENNVSFEELCVYA 75 (82)
T ss_pred CCCchHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333333334445443 666777766666666655555568888888664
No 188
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.41 E-value=12 Score=27.79 Aligned_cols=64 Identities=16% Similarity=0.300 Sum_probs=51.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 5 AVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 5 ~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
..+..+|+..|....|.|+-.+-...+...+ ++...+-+++...+..+.|.++..+|...++..
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlv 74 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLV 74 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHh
Confidence 4577889999999999999998887776555 566777778888888888889999888776644
No 189
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=53.41 E-value=19 Score=15.31 Aligned_cols=17 Identities=6% Similarity=-0.085 Sum_probs=13.2
Q ss_pred CHHHHHHHHHhccccCC
Q 034092 88 VPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 88 ~~~e~~~~l~~~~~~~s 104 (104)
+-+++...|...|++++
T Consensus 5 s~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVP 21 (38)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 56788888888888764
No 190
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.13 E-value=38 Score=23.15 Aligned_cols=57 Identities=21% Similarity=0.371 Sum_probs=38.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHH
Q 034092 7 LREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVEL 66 (104)
Q Consensus 7 ~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~ 66 (104)
+..+|..+-+- +|+++-..-+..+- ...++.+.+-++++..|.+.+|.++-+||--.
T Consensus 446 yde~fy~l~p~-~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 446 YDEIFYTLSPV-NGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHhhhhccccc-CceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 44556555443 56666655555443 23466778888888888888898888888543
No 191
>PHA02335 hypothetical protein
Probab=51.47 E-value=40 Score=18.41 Aligned_cols=27 Identities=15% Similarity=0.272 Sum_probs=21.1
Q ss_pred cceehHHHHHHHHHHHHHHHHHhhhhc
Q 034092 56 GTMSFEEFVELNKFLLKVQHAFSDLER 82 (104)
Q Consensus 56 ~~i~~~ef~~~~~~~~~~~~~f~~~d~ 82 (104)
..|++++|..=+.+..-+.+.|+++.+
T Consensus 23 ~sVt~ddf~~DlkRi~yIkrllKRy~~ 49 (118)
T PHA02335 23 QSVTYDDFEEDLKRFKYIKRLFKRYLN 49 (118)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcC
Confidence 458888888877777777888888876
No 192
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=50.87 E-value=58 Score=24.70 Aligned_cols=58 Identities=12% Similarity=-0.060 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCCCcceehHHHHHHHHHH-----------HHHHHHHhhhhc-CCCccCHHHHHHHHHh
Q 034092 41 SVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----------LKVQHAFSDLER-GRGYLVPDNVYEVSFD 98 (104)
Q Consensus 41 ~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~ 98 (104)
.+++.++...+....+..++++|+..+..+ .++..+-..-|+ ..|.++..++...+..
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 345666777777767778888888876533 222233333344 4577888887776654
No 193
>PLN02230 phosphoinositide phospholipase C 4
Probab=50.65 E-value=94 Score=22.52 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH---------HHHHHHHhhh-------hc-CCCccCHHHHHHHHHhc
Q 034092 38 FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL---------LKVQHAFSDL-------ER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~---------~~~~~~f~~~-------d~-~~g~i~~~e~~~~l~~~ 99 (104)
.+..++..+|..+..++ +.++.++|...+... +....++..+ .. +.+.++.+.|..+|.+-
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s~ 103 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFST 103 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcCc
Confidence 35678888999986444 689999998888643 2234444332 23 35569999999988653
No 194
>PRK01844 hypothetical protein; Provisional
Probab=50.04 E-value=34 Score=17.22 Aligned_cols=32 Identities=19% Similarity=0.102 Sum_probs=26.3
Q ss_pred CCcccHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 034092 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 50 (104)
+=.|+.+-++..+.+.|..+++..++++.+..
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34688888888888999999998888887765
No 195
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=49.55 E-value=64 Score=21.76 Aligned_cols=49 Identities=20% Similarity=0.185 Sum_probs=25.3
Q ss_pred CcccHHHHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCcceehHHHHHHHHHH
Q 034092 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRM-YDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 20 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~-~d~~~~~~i~~~ef~~~~~~~ 70 (104)
..++.+||...|.. +.. +.+.+...+.. -+.--.-++.|.||++.+..+
T Consensus 6 ~~~~LeeLe~kLa~-~d~-~Kd~V~~~I~ea~~sILPlRL~FNeFi~tma~I 55 (379)
T PF11593_consen 6 PNLKLEELEEKLAS-NDN-SKDSVMDKISEAQDSILPLRLQFNEFIQTMANI 55 (379)
T ss_pred CCCcHHHHHHHHhc-CCc-hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 34667777777763 223 44433333322 222223456777777776543
No 196
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=49.21 E-value=37 Score=17.38 Aligned_cols=64 Identities=13% Similarity=0.056 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHHHHhhhhc-CCC-ccCHHHHHHHHHh
Q 034092 21 SIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-GRG-YLVPDNVYEVSFD 98 (104)
Q Consensus 21 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d~-~~g-~i~~~e~~~~l~~ 98 (104)
.+++.+++.+.+.+| +++..++.+-..+. +.. +...++++.+-. ... .-+...+..+|+.
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~ie~~~~-------~~~---------Eq~yqmL~~W~~~~g~~~At~~~L~~aLr~ 69 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERVELDHR-------RCR---------DAQYQMLKVWKERGPRPYATLQHLLSVLRD 69 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHHHHhCC-------ChH---------HHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence 477788888888888 55666654432221 111 333444455545 333 5888899999988
Q ss_pred cccc
Q 034092 99 MVLT 102 (104)
Q Consensus 99 ~~~~ 102 (104)
++.+
T Consensus 70 ~~l~ 73 (80)
T cd08313 70 MELV 73 (80)
T ss_pred cCcH
Confidence 8765
No 197
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.00 E-value=37 Score=17.01 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=25.3
Q ss_pred CCcccHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 034092 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 50 (104)
+=.|+.+-++..+.+.|..+++..++++++..
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i 67 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSI 67 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 45677888888888888888888888887665
No 198
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=47.42 E-value=44 Score=17.79 Aligned_cols=26 Identities=8% Similarity=0.125 Sum_probs=17.3
Q ss_pred CcccHHHHHHHHHhCCCCCCHHHHHHHH
Q 034092 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMI 47 (104)
Q Consensus 20 g~i~~~el~~~l~~~~~~~~~~~~~~~~ 47 (104)
..++..+++.+.+.+| +++..+..+-
T Consensus 16 ~~~~~~~wK~faR~lg--lse~~Id~I~ 41 (97)
T cd08316 16 DVMTLKDVKKFVRKSG--LSEPKIDEIK 41 (97)
T ss_pred HHcCHHHHHHHHHHcC--CCHHHHHHHH
Confidence 3467778888888777 5555555544
No 199
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=45.82 E-value=33 Score=22.78 Aligned_cols=94 Identities=12% Similarity=0.141 Sum_probs=45.1
Q ss_pred HHHHHHHHHhh--CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHH-HHHHHHHHHhhh
Q 034092 4 TAVLREWFDRV--DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-FLLKVQHAFSDL 80 (104)
Q Consensus 4 ~~~~~~~f~~~--D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~-~~~~~~~~f~~~ 80 (104)
++++..+..-+ |.|+...+--.++......+....-...+.-+.+-+..+=.|.+=|.|...-+. ..+.+.++|...
T Consensus 44 ~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lM 123 (355)
T PRK13654 44 REELDAILEEMRADYNRHHFVRDEEFDQDWDHLDPETRKEFIDFLERSCTAEFSGFLLYKELSRRLKDRNPLLAELFQLM 123 (355)
T ss_pred HHHHHHHHHHHHhCcccccccCChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhccccCcHHHHHHHHH
Confidence 44555555544 444444555555555443332222222233333444444456666666555543 225566776554
Q ss_pred h--c--CCCccCHHHHHHHHHhcccc
Q 034092 81 E--R--GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 81 d--~--~~g~i~~~e~~~~l~~~~~~ 102 (104)
. . +.|.|.. ++.++|+.
T Consensus 124 aRDEARHAGFlNk-----am~df~l~ 144 (355)
T PRK13654 124 ARDEARHAGFLNK-----AMKDFGLS 144 (355)
T ss_pred hhhHHHHhhhHHH-----HHHHcCcc
Confidence 3 2 5666543 45555544
No 200
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=45.80 E-value=67 Score=26.46 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=25.9
Q ss_pred HHHhCCCCCcceehHHHHHHHHH-----HHHHHHHHhhhhc-CCCccCHHHHHHH
Q 034092 47 IRMYDFDRNGTMSFEEFVELNKF-----LLKVQHAFSDLER-GRGYLVPDNVYEV 95 (104)
Q Consensus 47 ~~~~d~~~~~~i~~~ef~~~~~~-----~~~~~~~f~~~d~-~~g~i~~~e~~~~ 95 (104)
|+.||+++.|.|+-.+|...+.. ..++.-+..-... .+...+.++|..-
T Consensus 4063 fkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4063 FKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFVDR 4117 (5019)
T ss_pred chhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHHHH
Confidence 55667777777777777766632 1333333333333 4444555554443
No 201
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=45.69 E-value=37 Score=16.36 Aligned_cols=29 Identities=14% Similarity=0.059 Sum_probs=17.0
Q ss_pred HHHHhhhhc-CCCccCHHHHHHHHHhcccc
Q 034092 74 QHAFSDLER-GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 74 ~~~f~~~d~-~~g~i~~~e~~~~l~~~~~~ 102 (104)
.++++.+.. ....++.++...-....|.|
T Consensus 7 ~~v~~~l~t~~~~GLs~~ev~~r~~~~G~N 36 (69)
T PF00690_consen 7 EEVLKRLNTSSSQGLSSEEVEERRKKYGPN 36 (69)
T ss_dssp HHHHHHHTTBTSSBBTHHHHHHHHHHHSSS
T ss_pred HHHHHHHCcCCCCCCCHHHHHHHHHhcccc
Confidence 445555553 33336777777776666655
No 202
>PF15244 HSD3: Hydroxy-steroid dehydrogenase
Probab=45.69 E-value=63 Score=22.18 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=34.2
Q ss_pred ceehHHHHHHHHHH---------HHHHHHHhhhhc-CCCccCHHHHHHHHHhcccc
Q 034092 57 TMSFEEFVELNKFL---------LKVQHAFSDLER-GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 57 ~i~~~ef~~~~~~~---------~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~~~ 102 (104)
.+-|-+|+.-+... ..+.++|+.+-. +.|.++...+.+.+..+...
T Consensus 359 El~YL~Fi~dVT~eIL~~GlfSnr~Lervfe~HI~~Nk~~Lde~kMr~ll~~LK~d 414 (419)
T PF15244_consen 359 ELLYLKFIEDVTNEILKRGLFSNRVLERVFERHIDQNKHRLDEEKMRHLLEQLKVD 414 (419)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHh
Confidence 34555666544321 578999999988 99999999999998877544
No 203
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.97 E-value=30 Score=20.71 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhhhc-CCCccCHHHHHHHHHhcc
Q 034092 65 ELNKFLLKVQHAFSDLER-GRGYLVPDNVYEVSFDMV 100 (104)
Q Consensus 65 ~~~~~~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~ 100 (104)
.++++.+..+++|..||+ .--..+-+++.+.+..-+
T Consensus 47 tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~ 83 (179)
T TIGR00624 47 TVLRKRENYRRAFSGFDIVKVARMTDADVERLLQDDG 83 (179)
T ss_pred HHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCcc
Confidence 445556777777877777 655566677666665443
No 204
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=43.86 E-value=39 Score=16.20 Aligned_cols=15 Identities=7% Similarity=0.246 Sum_probs=6.6
Q ss_pred HHHHHHHHHhccccC
Q 034092 89 PDNVYEVSFDMVLTV 103 (104)
Q Consensus 89 ~~e~~~~l~~~~~~~ 103 (104)
.+++..+.+..|+.+
T Consensus 27 ~e~~~~lA~~~Gf~f 41 (64)
T TIGR03798 27 PEDRVAIAKEAGFEF 41 (64)
T ss_pred HHHHHHHHHHcCCCC
Confidence 344444444444443
No 205
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=43.43 E-value=28 Score=17.30 Aligned_cols=19 Identities=11% Similarity=0.085 Sum_probs=10.8
Q ss_pred ccCHHHHHHHHHhccccCC
Q 034092 86 YLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~s 104 (104)
.-+-+|+...|...|+.+|
T Consensus 19 i~sQ~eL~~~L~~~Gi~vT 37 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVT 37 (70)
T ss_dssp --SHHHHHHHHHHTT-T--
T ss_pred cCCHHHHHHHHHHcCCCcc
Confidence 3466777888877777764
No 206
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=43.13 E-value=34 Score=15.30 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=11.8
Q ss_pred CHHHHHHHHHhccccCC
Q 034092 88 VPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 88 ~~~e~~~~l~~~~~~~s 104 (104)
+.+++..+-+..|+.+|
T Consensus 28 ~~~e~~~lA~~~Gy~ft 44 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFT 44 (49)
T ss_pred CHHHHHHHHHHcCCCCC
Confidence 56677777777777664
No 207
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=43.03 E-value=69 Score=18.79 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=36.8
Q ss_pred HHHHHHHhhCC----CCCC-cccHHHHHHHHHhCC----CCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH
Q 034092 6 VLREWFDRVDS----EKTG-SIAAAQLKHAFAVGN----LDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL 70 (104)
Q Consensus 6 ~~~~~f~~~D~----~~~g-~i~~~el~~~l~~~~----~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~ 70 (104)
.+...|+.|.. ..+| .++-..+..++...+ ..++.-.....|.......-+.++|++|...+..+
T Consensus 13 ~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 13 GLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEEL 86 (180)
T ss_pred hHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHH
Confidence 34555555533 3333 455556666666543 23444444456666655556789999997766533
No 208
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=42.93 E-value=29 Score=20.93 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhhhc-CCCccCHHHHHHHHHhcc
Q 034092 65 ELNKFLLKVQHAFSDLER-GRGYLVPDNVYEVSFDMV 100 (104)
Q Consensus 65 ~~~~~~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~ 100 (104)
.++++.+.++++|..||+ .--..+.+++.+.+..-+
T Consensus 48 tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~ 84 (187)
T PRK10353 48 TVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAG 84 (187)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHHhcCch
Confidence 445556777788888877 655567777776665543
No 209
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=42.13 E-value=17 Score=17.80 Aligned_cols=18 Identities=11% Similarity=0.301 Sum_probs=11.8
Q ss_pred ccCHHHHHHHHHhccccC
Q 034092 86 YLVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~ 103 (104)
.++.+++...|+.+|+.+
T Consensus 18 ~i~~~~i~~~L~~lg~~~ 35 (70)
T PF03484_consen 18 DISPEEIIKILKRLGFKV 35 (70)
T ss_dssp ---HHHHHHHHHHTT-EE
T ss_pred CCCHHHHHHHHHHCCCEE
Confidence 478888889999888764
No 210
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=41.92 E-value=37 Score=15.27 Aligned_cols=18 Identities=11% Similarity=-0.117 Sum_probs=14.8
Q ss_pred ccCHHHHHHHHHhccccC
Q 034092 86 YLVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~ 103 (104)
.++-+|+...|..+|++.
T Consensus 5 ~LSd~eL~~~L~~~G~~~ 22 (44)
T smart00540 5 RLSDAELRAELKQYGLPP 22 (44)
T ss_pred HcCHHHHHHHHHHcCCCC
Confidence 377889999999999874
No 211
>PF12983 DUF3867: Protein of unknown function (DUF3867); InterPro: IPR024218 This entry represents a family of functionally uncharacterised proteins that are found in bacteria. Proteins in this family are approximately 190 amino acids in length.
Probab=41.70 E-value=78 Score=18.99 Aligned_cols=80 Identities=14% Similarity=0.150 Sum_probs=40.4
Q ss_pred CcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHH-HH-------HHHHHHHhhhhcCCCccCHHH
Q 034092 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK-FL-------LKVQHAFSDLERGRGYLVPDN 91 (104)
Q Consensus 20 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~-~~-------~~~~~~f~~~d~~~g~i~~~e 91 (104)
..|++.+++.-.+.-....-++.+-.++-. -..|.++..+|..-+. .+ +.+..+-+.+=..-| ++.++
T Consensus 2 rIIdFnelKNKvkdkDiDKFE~YiY~ly~~---~a~Gklsm~dFsk~I~~YmeeNNISqeKf~niQkk~mERYG-fd~~~ 77 (186)
T PF12983_consen 2 RIIDFNELKNKVKDKDIDKFEEYIYSLYYD---VAEGKLSMADFSKKIMEYMEENNISQEKFLNIQKKFMERYG-FDPSE 77 (186)
T ss_pred ceecHHHHhhhcccccHHHHHHHHHHHHHH---HhcCcccHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CCHHH
Confidence 457777777655443322223333333222 2467888888876442 22 222222222211111 56777
Q ss_pred HHHHHHhccccC
Q 034092 92 VYEVSFDMVLTV 103 (104)
Q Consensus 92 ~~~~l~~~~~~~ 103 (104)
+..-++.+|+++
T Consensus 78 iE~q~K~~Gid~ 89 (186)
T PF12983_consen 78 IEKQMKSMGIDM 89 (186)
T ss_pred HHHHHHHcCCCc
Confidence 777777777665
No 212
>COG1423 ATP-dependent DNA ligase, homolog of eukaryotic ligase III [DNA replication, recombination, and repair]
Probab=41.37 E-value=81 Score=21.25 Aligned_cols=16 Identities=0% Similarity=-0.039 Sum_probs=10.9
Q ss_pred cCHHHHHHHHHhcccc
Q 034092 87 LVPDNVYEVSFDMVLT 102 (104)
Q Consensus 87 i~~~e~~~~l~~~~~~ 102 (104)
-+.+++...++.+|.+
T Consensus 329 e~a~~~~~~~~klg~~ 344 (382)
T COG1423 329 ETAEEFLDHLKKLGVH 344 (382)
T ss_pred HHHHHHHHHHHHhCCc
Confidence 4566677777777765
No 213
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=41.17 E-value=44 Score=22.15 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=43.9
Q ss_pred HHHHHHHHHhh--CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH-HHHHHHHHhhh
Q 034092 4 TAVLREWFDRV--DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-LLKVQHAFSDL 80 (104)
Q Consensus 4 ~~~~~~~f~~~--D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~f~~~ 80 (104)
++++..+..-+ |.|+...+--.++......+....-...+.-+.+-+..+=.|.+=|.|...-+.. .+.+.++|...
T Consensus 40 ~~e~~A~l~E~r~DyNr~HF~R~~eF~~~~d~l~~e~r~~FidFLerScTaEFSGflLYKEl~rrlk~~nP~lae~F~lM 119 (351)
T CHL00185 40 IEEIEAILEEFRADYNQQHFIRDNEFNQSWSNLDEKTKSLFVEFLERSCTAEFSGFLLYKELSRKLKDKNPLLAEGFLLM 119 (351)
T ss_pred HHHHHHHHHHHHhCccccccccChhhhhchhhCCHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhccCCcHHHHHHHHH
Confidence 44555555444 4444445555555554433322211222333333344444566666665544432 24566666555
Q ss_pred h--c--CCCccCHHHHHHHHHhcccc
Q 034092 81 E--R--GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 81 d--~--~~g~i~~~e~~~~l~~~~~~ 102 (104)
. . +.|.|.. ++.++|+.
T Consensus 120 aRDEARHAGFlNk-----am~df~l~ 140 (351)
T CHL00185 120 SRDEARHAGFLNK-----AMSDFNLS 140 (351)
T ss_pred hhhhHHHhhhHHH-----HHHHcCcc
Confidence 3 2 5666543 45555443
No 214
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=41.03 E-value=63 Score=17.78 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=30.9
Q ss_pred hhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhC
Q 034092 13 RVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYD 51 (104)
Q Consensus 13 ~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d 51 (104)
..-..++..++..+++.+|...|..+....+..+++.+.
T Consensus 9 l~~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~ 47 (113)
T PLN00138 9 LAVLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVK 47 (113)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHc
Confidence 333455667999999999999999888888888877773
No 215
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=40.32 E-value=22 Score=18.13 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=17.9
Q ss_pred HHHhCCCCCcceehHHHHHHHH--HHHHHHHHHhhhh
Q 034092 47 IRMYDFDRNGTMSFEEFVELNK--FLLKVQHAFSDLE 81 (104)
Q Consensus 47 ~~~~d~~~~~~i~~~ef~~~~~--~~~~~~~~f~~~d 81 (104)
+.....+..+.++..+....+. ....+.++|..+.
T Consensus 43 l~~w~~n~~~~lt~~~~~~~i~~~d~~~~~ri~~FL~ 79 (86)
T PF04433_consen 43 LAEWRKNPNKYLTKTDARKLIKGIDVNKIRRIYDFLE 79 (86)
T ss_dssp HHHHHHHTTS---HHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCCcccHHHHHHHccccCHHHHHHHHHHHH
Confidence 3443344556677777766665 3355566665555
No 216
>cd07894 Adenylation_RNA_ligase Adenylation domain of RNA circularization proteins. RNA circularization proteins are capable of circularizing RNA molecules in an ATP-dependent reaction. RNA circularization may protect RNA from exonuclease activity. This model comprises the adenylation domain, the minimal catalytic unit that is common to all members of the ATP-dependent DNA ligase family, and the carboxy-terminal extension of RNA circularization protein that serves as a dimerization module. ATP-dependent polynucleotide ligases catalyze phosphodiester bond formation of nicked nucleic acid substrates using the high energy nucleotide of ATP as a cofactor in a three step reaction mechanism. The adenylation domain binds ATP and contains many active site residues.
Probab=39.91 E-value=75 Score=21.14 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=12.0
Q ss_pred cCHHHHHHHHHhccccC
Q 034092 87 LVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 87 i~~~e~~~~l~~~~~~~ 103 (104)
=+..+|...++.+|.++
T Consensus 288 ~~~~~~~~~~~~~~~~~ 304 (342)
T cd07894 288 ETAEEFLEHLRRLGVHI 304 (342)
T ss_pred HHHHHHHHHHHHcCCeE
Confidence 45677777888777664
No 217
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=39.50 E-value=30 Score=16.70 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=14.4
Q ss_pred ccCHHHHHHHHHhccccC
Q 034092 86 YLVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 86 ~i~~~e~~~~l~~~~~~~ 103 (104)
.++.+++...|..+|+.+
T Consensus 18 ~i~~~ei~~~L~~lg~~~ 35 (71)
T smart00874 18 DLSAEEIEEILKRLGFEV 35 (71)
T ss_pred CCCHHHHHHHHHHCCCeE
Confidence 478888888998888764
No 218
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=39.04 E-value=64 Score=21.19 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=42.5
Q ss_pred HHHHHHHHHhh--CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH-HHHHHHHHhhh
Q 034092 4 TAVLREWFDRV--DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-LLKVQHAFSDL 80 (104)
Q Consensus 4 ~~~~~~~f~~~--D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~f~~~ 80 (104)
++++..+..-+ |.|+...+--.++...-..+........+.-+.+-+..+=.|.+=|.|...-+.. .+.+.++|...
T Consensus 24 ~~e~~A~l~E~r~DyNr~HF~R~~ef~~~~~~~~~e~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lM 103 (323)
T cd01047 24 REEFEAMLAEFKADYNRHHFVRNDEFDQAADKIDPELRQIFLEFLERSCTSEFSGFLLYKELGRRLKNTNPVVAELFRLM 103 (323)
T ss_pred HHHHHHHHHHHHhCcccccccCCchhhhhhhhCCHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 34444444444 4444444444455543333222222222333333344444566666665544432 24566666554
Q ss_pred h--c--CCCccCHHHHHHHHHhcccc
Q 034092 81 E--R--GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 81 d--~--~~g~i~~~e~~~~l~~~~~~ 102 (104)
. . +.|.|.. +++++|+.
T Consensus 104 aRDEARHAGFlNk-----am~df~l~ 124 (323)
T cd01047 104 ARDEARHAGFLNK-----ALSDFNLA 124 (323)
T ss_pred hhhHHHHhhhHHH-----HHHHcCcc
Confidence 3 2 5666543 44554443
No 219
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=38.73 E-value=49 Score=15.84 Aligned_cols=31 Identities=3% Similarity=-0.115 Sum_probs=20.7
Q ss_pred CcccHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 034092 20 GSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (104)
Q Consensus 20 g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 50 (104)
..++-.|+...+..++..++...+..++...
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v 38 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQV 38 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 3566777777777777777776666555443
No 220
>PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L9 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L9 is known to bind directly to the 23S rRNA. It belongs to a family of ribosomal proteins grouped on the basis of sequence similarities [, ]. The crystal structure of Bacillus stearothermophilus L9 shows the 149-residue protein comprises two globular domains connected by a rigid linker []. Each domain contains an rRNA binding site, and the protein functions as a structural protein in the large subunit of the ribosome. The C-terminal domain consists of two loops, an alpha-helix and a three-stranded mixed parallel, anti-parallel beta-sheet packed against the central alpha-helix. The long central alpha-helix is exposed to solvent in the middle and participates in the hydrophobic cores of the two domains at both ends. ; PDB: 3D5B_I 3PYV_H 3F1H_I 3PYR_H 3MRZ_H 1VSP_G 3MS1_H 1VSA_G 3PYT_H 2WH4_I ....
Probab=38.59 E-value=51 Score=17.03 Aligned_cols=20 Identities=5% Similarity=0.125 Sum_probs=16.3
Q ss_pred CCccCHHHHHHHHHhc-cccC
Q 034092 84 RGYLVPDNVYEVSFDM-VLTV 103 (104)
Q Consensus 84 ~g~i~~~e~~~~l~~~-~~~~ 103 (104)
-|.||..++...+... |+.+
T Consensus 29 fGSVt~~dIa~~l~~~~g~~I 49 (87)
T PF03948_consen 29 FGSVTSKDIAKALKEQTGIEI 49 (87)
T ss_dssp SSEBSHHHHHHHHHHCCSSSS
T ss_pred ecCcCHHHHHHHHHHhhCCeE
Confidence 3678999999999888 7765
No 221
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=38.27 E-value=62 Score=16.83 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHhCCCCCccee---hHHHHHHHH-HHHHH-HHHHhhhhc-CCCccCHHHHHHHHHhccccC
Q 034092 37 DFSLSVVQQMIRMYDFDRNGTMS---FEEFVELNK-FLLKV-QHAFSDLER-GRGYLVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 37 ~~~~~~~~~~~~~~d~~~~~~i~---~~ef~~~~~-~~~~~-~~~f~~~d~-~~g~i~~~e~~~~l~~~~~~~ 103 (104)
.++...++.+.+... -..|+ |++....+. .++.+ ..+-....- +.-+|+.+++..+++..|.++
T Consensus 13 gi~k~~I~RLarr~G---vkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~g~~~ 82 (85)
T cd00076 13 GITKPAIRRLARRGG---VKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTL 82 (85)
T ss_pred cCCHHHHHHHHHHcC---cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHCCCCc
Confidence 345555555554432 22344 555554443 22222 222222223 677799999999999998764
No 222
>KOG3423 consensus Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.04 E-value=31 Score=20.41 Aligned_cols=20 Identities=10% Similarity=0.031 Sum_probs=17.5
Q ss_pred CccCHHHHHHHHHhccccCC
Q 034092 85 GYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 85 g~i~~~e~~~~l~~~~~~~s 104 (104)
=.++.++|..+|...|++++
T Consensus 151 ~tLtmeDL~~AL~EyGinv~ 170 (176)
T KOG3423|consen 151 YTLTMEDLSPALAEYGINVK 170 (176)
T ss_pred eeeeHHHHHHHHHHhCcccC
Confidence 34899999999999999974
No 223
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=38.03 E-value=42 Score=17.69 Aligned_cols=22 Identities=5% Similarity=-0.053 Sum_probs=14.0
Q ss_pred CCCccCHHHHHHHHHhccccCC
Q 034092 83 GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~s 104 (104)
++..-+.+++...|..+|++++
T Consensus 38 Nns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 38 NNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp S-SSS-HHHHHHHHHHTTTT--
T ss_pred CCCCCCHHHHHHHHHhcCcCCC
Confidence 5556777888888888887753
No 224
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=37.80 E-value=77 Score=19.38 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=20.2
Q ss_pred HHHHHHhhhhc-CCCc--cCHHHHHHHHHhcccc
Q 034092 72 KVQHAFSDLER-GRGY--LVPDNVYEVSFDMVLT 102 (104)
Q Consensus 72 ~~~~~f~~~d~-~~g~--i~~~e~~~~l~~~~~~ 102 (104)
....+++.-.. |+|. ++.+|+...|+..|++
T Consensus 53 SA~~~~~~q~~lG~gfly~~~eEL~e~Lk~~g~R 86 (210)
T COG1059 53 SATMGLRAQNELGDGFLYLSEEELREKLKEVGYR 86 (210)
T ss_pred hHHHHHHHHHHhccccccCCHHHHHHHHHHhcch
Confidence 33444444444 5555 4888899998888765
No 225
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=37.71 E-value=81 Score=18.04 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=15.7
Q ss_pred CcccHHHHHHHHHh-CCCCCCHHHHHHHHHHhC
Q 034092 20 GSIAAAQLKHAFAV-GNLDFSLSVVQQMIRMYD 51 (104)
Q Consensus 20 g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d 51 (104)
+.|+++.|+..|+. +...++.+-++.+|..+.
T Consensus 47 ~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 47 EPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp TEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred CCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 45666666666655 244456666666665553
No 226
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=37.54 E-value=93 Score=19.27 Aligned_cols=37 Identities=8% Similarity=0.056 Sum_probs=29.9
Q ss_pred CCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCC
Q 034092 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDF 52 (104)
Q Consensus 16 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 52 (104)
.|.+|+.+.+++...++..+..++.+.+..+++.-++
T Consensus 54 lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~K 90 (211)
T COG1859 54 LDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDDK 90 (211)
T ss_pred eccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCCC
Confidence 4678999999999999988888888887777665443
No 227
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=36.96 E-value=35 Score=13.95 Aligned_cols=12 Identities=17% Similarity=0.016 Sum_probs=6.3
Q ss_pred cCHHHHHHHHHh
Q 034092 87 LVPDNVYEVSFD 98 (104)
Q Consensus 87 i~~~e~~~~l~~ 98 (104)
||.++++.++..
T Consensus 17 ls~eeir~FL~~ 28 (30)
T PF08671_consen 17 LSKEEIREFLEF 28 (30)
T ss_dssp --HHHHHHHHHH
T ss_pred CCHHHHHHHHHh
Confidence 666776666653
No 228
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=36.95 E-value=60 Score=16.34 Aligned_cols=64 Identities=11% Similarity=-0.038 Sum_probs=37.0
Q ss_pred cccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHHHHhhhhc-CCCccCHHHHHHHHHhc
Q 034092 21 SIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 21 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~ 99 (104)
.++..+++.+.+.+| ++...+..+-. +..+ .. +...+++..+-. ....-|.+.+.++|...
T Consensus 8 ~v~~~~Wk~laR~LG--ls~~~I~~ie~----~~~~--~~----------eq~~~mL~~W~~k~G~~At~~~L~~aL~~~ 69 (79)
T cd08784 8 EVPFDQHKRFFRKLG--LSDNEIKVAEL----DNPQ--HR----------DRVYELLRIWRNKEGRKATLNTLIKALKDL 69 (79)
T ss_pred HCCHHHHHHHHHHcC--CCHHHHHHHHH----cCCc--hH----------HHHHHHHHHHHhccCcCcHHHHHHHHHHHc
Confidence 477888888888887 44555544321 1111 11 233344444434 33356888888888888
Q ss_pred ccc
Q 034092 100 VLT 102 (104)
Q Consensus 100 ~~~ 102 (104)
|.+
T Consensus 70 ~~~ 72 (79)
T cd08784 70 DQR 72 (79)
T ss_pred ccH
Confidence 765
No 229
>PF13041 PPR_2: PPR repeat family
Probab=36.55 E-value=20 Score=15.82 Aligned_cols=25 Identities=8% Similarity=0.086 Sum_probs=12.5
Q ss_pred eehHHHHHHHHHHHHHHHHHhhhhc
Q 034092 58 MSFEEFVELNKFLLKVQHAFSDLER 82 (104)
Q Consensus 58 i~~~ef~~~~~~~~~~~~~f~~~d~ 82 (104)
++|.-.+..+.....+.++++.+..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~ 28 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKE 28 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4455555555444445555555554
No 230
>TIGR01209 RNA ligase, Pab1020 family. Members of this family are found, so far, in a single copy per genome and largely in thermophiles, of which only Aquifex aeolicus is bacterial rather than archaeal. PSI-BLAST converges after a single iteration to the whole of this family and reveals no convincing similarity to any other protein. The member protein Pab1020 has been characterized as an RNA ligase with circularization activity.
Probab=36.54 E-value=81 Score=21.37 Aligned_cols=17 Identities=0% Similarity=-0.056 Sum_probs=11.2
Q ss_pred cCHHHHHHHHHhccccC
Q 034092 87 LVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 87 i~~~e~~~~l~~~~~~~ 103 (104)
-+.++|...++.+|.++
T Consensus 321 ~~~~~~~~hl~~~g~~i 337 (374)
T TIGR01209 321 ETAEEFLTHFEKLGVHI 337 (374)
T ss_pred HHHHHHHHHHHHcCCeE
Confidence 45666777777777654
No 231
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=36.41 E-value=1.2e+02 Score=19.57 Aligned_cols=32 Identities=19% Similarity=0.050 Sum_probs=23.7
Q ss_pred HHHHHhhhhc-CCCccCHHH---HHHHHHhccccCC
Q 034092 73 VQHAFSDLER-GRGYLVPDN---VYEVSFDMVLTVS 104 (104)
Q Consensus 73 ~~~~f~~~d~-~~g~i~~~e---~~~~l~~~~~~~s 104 (104)
...+|+++-. +.|.-+.+. |..+|+.+|++++
T Consensus 53 ~~~l~~KlV~~~RGGyCfE~N~Lf~~~L~~LGF~v~ 88 (281)
T PRK15047 53 DQSLEEKLVIARRGGYCFEQNGLFERVLRELGFNVR 88 (281)
T ss_pred HHHHHHHHhcCCCCEEcHhHHHHHHHHHHHcCCcEE
Confidence 4566777766 777777765 8888888888763
No 232
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=36.37 E-value=70 Score=16.90 Aligned_cols=78 Identities=13% Similarity=0.102 Sum_probs=40.2
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH-----HHHHHHHhhhhc-CCCccCHHHHHHHH
Q 034092 23 AAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL-----LKVQHAFSDLER-GRGYLVPDNVYEVS 96 (104)
Q Consensus 23 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~-----~~~~~~f~~~d~-~~g~i~~~e~~~~l 96 (104)
...++....+.....++..-++.+++..... .++-+-...+-..+ .-...+-....- +.-+|+.+++..++
T Consensus 5 ~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~---Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~DI~la~ 81 (91)
T COG2036 5 GLKEIRRYQRSTDLLLPKAPVRRILRKAGAE---RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAEDIKLAL 81 (91)
T ss_pred hHHHHHhhhhhhhhhcCchHHHHHHHHHhHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHH
Confidence 3444445444444444545555555554322 33322222221111 122333344444 77889999999999
Q ss_pred HhccccC
Q 034092 97 FDMVLTV 103 (104)
Q Consensus 97 ~~~~~~~ 103 (104)
..+|.+.
T Consensus 82 ~~~~~~~ 88 (91)
T COG2036 82 KRLGRRI 88 (91)
T ss_pred HHhcccc
Confidence 9888764
No 233
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=36.15 E-value=59 Score=21.64 Aligned_cols=94 Identities=16% Similarity=0.126 Sum_probs=43.7
Q ss_pred HHHHHHHHHhh--CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH-HHHHHHHHhhh
Q 034092 4 TAVLREWFDRV--DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF-LLKVQHAFSDL 80 (104)
Q Consensus 4 ~~~~~~~f~~~--D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~-~~~~~~~f~~~ 80 (104)
++++..+..-+ |.|+...+--.++......+....-...+.-+.+-+..+=.|.+=|.|...-+.. .+.+.++|...
T Consensus 40 ~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk~~nP~lae~F~lM 119 (357)
T PLN02508 40 MAEFEALLQEFKTDYNQTHFVRNEEFKAAADKIQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFTLM 119 (357)
T ss_pred HHHHHHHHHHHHhCccccccccChhhccchhhCCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcccCChHHHHHHHHh
Confidence 34444444444 4444444444455443333221111222333334444555677777766554432 25566776554
Q ss_pred h--c--CCCccCHHHHHHHHHhcccc
Q 034092 81 E--R--GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 81 d--~--~~g~i~~~e~~~~l~~~~~~ 102 (104)
. . +.|.|.. ++.++|+.
T Consensus 120 aRDEARHAGFlNk-----am~Df~l~ 140 (357)
T PLN02508 120 SRDEARHAGFLNK-----ALSDFNLA 140 (357)
T ss_pred CchhHHHHhHHHH-----HHHHcCcc
Confidence 3 2 4565543 44555443
No 234
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=36.09 E-value=1.1e+02 Score=21.68 Aligned_cols=77 Identities=8% Similarity=-0.029 Sum_probs=43.0
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHH----HHHHHHHhhhhc-C
Q 034092 9 EWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFL----LKVQHAFSDLER-G 83 (104)
Q Consensus 9 ~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~----~~~~~~f~~~d~-~ 83 (104)
.+|.++-+.+..-++..++..++..++......+--..|...+.... .+.|.+++..+..- ..+.++|..++. .
T Consensus 489 ~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~-gv~yl~v~~~i~sel~D~d~v~~~~~~f~dia 567 (612)
T COG5069 489 ALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVS-GVFYLDVLKGIHSELVDYDLVTRGFTEFDDIA 567 (612)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccc-cchHHHHHHHHhhhhcChhhhhhhHHHHHHhh
Confidence 45666655556678889999999988765543332223333222211 35666666554321 345566666655 4
Q ss_pred CCc
Q 034092 84 RGY 86 (104)
Q Consensus 84 ~g~ 86 (104)
+++
T Consensus 568 d~r 570 (612)
T COG5069 568 DAR 570 (612)
T ss_pred hhh
Confidence 444
No 235
>PF09415 CENP-X: CENP-S associating Centromere protein X; InterPro: IPR018552 Centromere protein X (CENP-X) is a component of the CENP-S complex. The CENP-S complex is composed of at least of CENP-S and CENP-X and is essential for the stable assembly of the outer kinetchore []. CENP-X is also a DNA-binding component of the Fanconi anemia (FA) core complex involved in DNA damage repair and genome maintenance. The FA complex is composed of CENPS, FANCA, FANCB, FANCC, FANCE, FANCF, FANCG, FANCL/PHF9, FANCM, FAAP24 and CENPX. Interacts with CENPS, FANCM and FAAP24 [, ].; PDB: 4DRB_L 4DRA_H 3V9R_D.
Probab=35.92 E-value=62 Score=16.19 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCCCcceeh------HHHHHHHHHHHHHHHHHhhhhcCCCc-cCHHHHHHHHHhc
Q 034092 43 VQQMIRMYDFDRNGTMSF------EEFVELNKFLLKVQHAFSDLERGRGY-LVPDNVYEVSFDM 99 (104)
Q Consensus 43 ~~~~~~~~d~~~~~~i~~------~ef~~~~~~~~~~~~~f~~~d~~~g~-i~~~e~~~~l~~~ 99 (104)
+..++...-.+...+|+- .+|+.++....-.+.+...-+.+++. ++.+++..++.++
T Consensus 5 i~rll~~~f~~~~tkIs~dal~l~~eyl~iFV~EAv~Ra~~~a~~e~~~~~le~e~LEki~pqL 68 (72)
T PF09415_consen 5 IARLLHEHFKDDKTKISKDALKLSAEYLRIFVREAVARAAEQAEAEGDEGFLEVEHLEKILPQL 68 (72)
T ss_dssp HHHHHCTTSSSTT-EE-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSEE-HHHHHHHCHCH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 334444433344455553 33444443322223333333335444 9999998877654
No 236
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=35.82 E-value=50 Score=22.16 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHHHHhhhhc
Q 034092 38 FSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER 82 (104)
Q Consensus 38 ~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d~ 82 (104)
.+...+-.++..|. .|++.+++|+.....++++.++|.....
T Consensus 315 ~p~~diP~lv~~y~---~Gkl~~d~lvt~~~~Le~INeaf~~m~~ 356 (366)
T COG1062 315 RPRSDIPRLVDLYM---AGKLPLDRLVTHTIPLEDINEAFDLMHE 356 (366)
T ss_pred ccccchhHHHHHHH---cCCCchhHHhhccccHHHHHHHHHHHhC
Confidence 45566666777763 6789999999887888888988877654
No 237
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=35.39 E-value=87 Score=17.73 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=25.9
Q ss_pred CcceehHHHHHHHHHH---------------HHHHHHHhhhhc-CCC-ccCHHHHHHH
Q 034092 55 NGTMSFEEFVELNKFL---------------LKVQHAFSDLER-GRG-YLVPDNVYEV 95 (104)
Q Consensus 55 ~~~i~~~ef~~~~~~~---------------~~~~~~f~~~d~-~~g-~i~~~e~~~~ 95 (104)
+..++-+||-.++... +.+.++-+.+.+ +.+ .+|..|..++
T Consensus 81 d~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 81 DEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 4456777777766432 567777777776 544 3888776554
No 238
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=35.33 E-value=71 Score=16.68 Aligned_cols=49 Identities=14% Similarity=0.011 Sum_probs=29.0
Q ss_pred CCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
.-.|+..+|..+|.......+..+...+=..+|.-.+++|+-=||--..
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 3568888888888776444444444445555677777888766654443
No 239
>TIGR02684 dnstrm_HI1420 probable addiction module antidote protein. gene pairs, when found on the bacterial chromosome, are located often with prophage regions, but also both in integrated plasmid regions and in housekeeping gene regions. Analysis suggests that the gene pair may serve as an addiction module.
Probab=35.31 E-value=54 Score=17.08 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=19.1
Q ss_pred cCCCccCHHHHHHHHHhccccCC
Q 034092 82 RGRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 82 ~~~g~i~~~e~~~~l~~~~~~~s 104 (104)
.+.+..+.+-+..++..+|++++
T Consensus 65 ~g~~~Ps~~tL~kI~~aLgi~l~ 87 (89)
T TIGR02684 65 SGKGNPTFDTILKVTKALGLKLT 87 (89)
T ss_pred cCCCCCCHHHHHHHHHHcCCcee
Confidence 35667899999999999998874
No 240
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=35.21 E-value=50 Score=14.89 Aligned_cols=39 Identities=8% Similarity=-0.014 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRM 49 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 49 (104)
...|..+|.. +.+.+..++..+-..+| ++...+..+|..
T Consensus 12 ~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 12 LEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 4456666665 45666677776666655 555666666644
No 241
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.79 E-value=57 Score=22.38 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHH
Q 034092 5 AVLREWFDRVDSEKTGSIAAAQLKHA 30 (104)
Q Consensus 5 ~~~~~~f~~~D~~~~g~i~~~el~~~ 30 (104)
..+..+|+..|.|++|.++-+||.-+
T Consensus 477 svlgkiwklad~d~dg~ld~eefala 502 (532)
T KOG1954|consen 477 SVLGKIWKLADIDKDGMLDDEEFALA 502 (532)
T ss_pred hHHHhhhhhhcCCcccCcCHHHHHHH
Confidence 45788999999999999999998644
No 242
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3.2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.
Probab=34.36 E-value=30 Score=20.67 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhhc-CCCccCHHHHHHHHHhcc
Q 034092 65 ELNKFLLKVQHAFSDLER-GRGYLVPDNVYEVSFDMV 100 (104)
Q Consensus 65 ~~~~~~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~ 100 (104)
.++.+.+.++++|.-||+ .--..+.+++.+++..-+
T Consensus 43 ~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~ 79 (179)
T PF03352_consen 43 TILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPG 79 (179)
T ss_dssp HHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcc
Confidence 455666888899999988 666677777777766543
No 243
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.32 E-value=63 Score=15.78 Aligned_cols=16 Identities=19% Similarity=0.544 Sum_probs=10.1
Q ss_pred CcceehHHHHHHHHHH
Q 034092 55 NGTMSFEEFVELNKFL 70 (104)
Q Consensus 55 ~~~i~~~ef~~~~~~~ 70 (104)
.|.|+++.|+..++.+
T Consensus 37 ~g~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSL 52 (65)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 3567777777776655
No 244
>PTZ00315 2'-phosphotransferase; Provisional
Probab=34.10 E-value=1.2e+02 Score=21.98 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=29.2
Q ss_pred CCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCC
Q 034092 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDF 52 (104)
Q Consensus 16 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~ 52 (104)
.|.+|+++.+++....+.-+..++.+.++.+++.-++
T Consensus 400 ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~ndK 436 (582)
T PTZ00315 400 ITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSDK 436 (582)
T ss_pred cCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCCC
Confidence 4678999999999988766667888888888766543
No 245
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=33.52 E-value=36 Score=12.73 Aligned_cols=8 Identities=0% Similarity=-0.089 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 034092 61 EEFVELNK 68 (104)
Q Consensus 61 ~ef~~~~~ 68 (104)
.-.+..+.
T Consensus 4 ~~li~~~~ 11 (31)
T PF01535_consen 4 NSLISGYC 11 (31)
T ss_pred HHHHHHHH
Confidence 33333333
No 246
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=33.51 E-value=80 Score=16.71 Aligned_cols=55 Identities=11% Similarity=0.190 Sum_probs=35.0
Q ss_pred CCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHHHH
Q 034092 18 KTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAF 77 (104)
Q Consensus 18 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f 77 (104)
++|.++..+...+-. .+.+.+.+..++...... |.-.|..|+..+...+.+..-.
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp~R--G~~AF~~F~~aL~e~~~l~~~l 86 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILPSR--GPKAFHAFLDSLEEFPWVRDKL 86 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHHHHHHH
Confidence 367888776665542 334566777777776444 5678999998886544444433
No 247
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=33.07 E-value=56 Score=14.81 Aligned_cols=38 Identities=13% Similarity=0.130 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIR 48 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~ 48 (104)
...|...|.. +.+.+..+...+-..+| ++...+..+|.
T Consensus 12 ~~~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 12 LKVLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred HHHHHHHHHH-----hcccccccccccccccc--ccccccccCHH
Confidence 4455555553 45666666666555554 55566666654
No 248
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=32.76 E-value=46 Score=13.69 Aligned_cols=16 Identities=31% Similarity=0.613 Sum_probs=10.4
Q ss_pred CcceehHHHHHHHHHH
Q 034092 55 NGTMSFEEFVELNKFL 70 (104)
Q Consensus 55 ~~~i~~~ef~~~~~~~ 70 (104)
.|.|++++++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4567777777766554
No 249
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=32.32 E-value=45 Score=20.27 Aligned_cols=27 Identities=0% Similarity=0.058 Sum_probs=21.7
Q ss_pred Hhhhhc-CCCccCHHHHHHHHHhccccC
Q 034092 77 FSDLER-GRGYLVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 77 f~~~d~-~~g~i~~~e~~~~l~~~~~~~ 103 (104)
+.=||. +-...|..+|..+|+..|++|
T Consensus 135 y~WYdTPNih~~Ti~DFe~lc~~~~i~I 162 (193)
T PF07021_consen 135 YEWYDTPNIHLCTIKDFEDLCRELGIRI 162 (193)
T ss_pred CcccCCCCcccccHHHHHHHHHHCCCEE
Confidence 344566 777889999999999998875
No 250
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=32.14 E-value=76 Score=16.05 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=27.3
Q ss_pred cHHHHHHHHHhCCCCCCHHHHHHHHHHhCC-CCCcceehHHHHHHH
Q 034092 23 AAAQLKHAFAVGNLDFSLSVVQQMIRMYDF-DRNGTMSFEEFVELN 67 (104)
Q Consensus 23 ~~~el~~~l~~~~~~~~~~~~~~~~~~~d~-~~~~~i~~~ef~~~~ 67 (104)
+..++..+|. |.+.+.+.+...+...+. ..-+.++-++++.++
T Consensus 43 ~i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 43 DIEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp CHHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 3566666663 667778888777777643 233457777776653
No 251
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=31.98 E-value=83 Score=16.94 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=8.4
Q ss_pred ccCHHHHHHHHHhcccc
Q 034092 86 YLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 86 ~i~~~e~~~~l~~~~~~ 102 (104)
.+|.+++...++..+.+
T Consensus 23 ~~ta~ei~~~l~~~~~~ 39 (120)
T PF01475_consen 23 HLTAEEIYDKLRKKGPR 39 (120)
T ss_dssp SEEHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHhhhccCC
Confidence 45555555555544433
No 252
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.49 E-value=53 Score=26.67 Aligned_cols=33 Identities=6% Similarity=0.044 Sum_probs=29.1
Q ss_pred HHHHHHHhhhhc-CCCccCHHHHHHHHHhccccC
Q 034092 71 LKVQHAFSDLER-GRGYLVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 71 ~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~~~~ 103 (104)
+...++|..+|+ ..|+|...++..+++.+.-|+
T Consensus 1417 ~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL 1450 (1592)
T KOG2301|consen 1417 EKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPL 1450 (1592)
T ss_pred HHHHHHHHhcChhhheeeeHhhHHHHHHhcCCcc
Confidence 567899999999 999999999999999886654
No 253
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=31.02 E-value=66 Score=14.98 Aligned_cols=14 Identities=29% Similarity=0.211 Sum_probs=8.4
Q ss_pred CCCccCHHHHHHHH
Q 034092 83 GRGYLVPDNVYEVS 96 (104)
Q Consensus 83 ~~g~i~~~e~~~~l 96 (104)
..|.|+.+||..-+
T Consensus 20 a~GrL~~~Ef~~R~ 33 (53)
T PF08044_consen 20 AEGRLSLDEFDERL 33 (53)
T ss_pred HCCCCCHHHHHHHH
Confidence 56666666665544
No 254
>PRK09462 fur ferric uptake regulator; Provisional
Probab=30.71 E-value=1.1e+02 Score=17.36 Aligned_cols=32 Identities=13% Similarity=0.182 Sum_probs=19.4
Q ss_pred CCCcccHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 034092 18 KTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRM 49 (104)
Q Consensus 18 ~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 49 (104)
..+.++.+++...|..-+..++...+...+..
T Consensus 30 ~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~ 61 (148)
T PRK09462 30 DNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQ 61 (148)
T ss_pred CCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHH
Confidence 34577777777777766655555554444333
No 255
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=30.69 E-value=49 Score=13.39 Aligned_cols=15 Identities=7% Similarity=0.127 Sum_probs=9.5
Q ss_pred CCCccCHHHHHHHHH
Q 034092 83 GRGYLVPDNVYEVSF 97 (104)
Q Consensus 83 ~~g~i~~~e~~~~l~ 97 (104)
..|-||.+||.+.-.
T Consensus 13 ~~G~IseeEy~~~k~ 27 (31)
T PF09851_consen 13 DKGEISEEEYEQKKA 27 (31)
T ss_pred HcCCCCHHHHHHHHH
Confidence 456677777765543
No 256
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=30.64 E-value=51 Score=18.63 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=14.2
Q ss_pred hhc-CCCccCHHHHHHHHHhcccc
Q 034092 80 LER-GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 80 ~d~-~~g~i~~~e~~~~l~~~~~~ 102 (104)
... |.+.|..++++.++...|+.
T Consensus 11 INVGG~nki~MaeLr~~l~~~Gf~ 34 (137)
T PF08002_consen 11 INVGGKNKIKMAELREALEDLGFT 34 (137)
T ss_dssp -SBTTBS---HHHHHHHHHHCT-E
T ss_pred eecCCCCcccHHHHHHHHHHcCCC
Confidence 345 56679999999999998864
No 257
>COG3820 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.10 E-value=40 Score=20.28 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=16.7
Q ss_pred HHHHHHhhhhc-CCCccCHHHHHHHH
Q 034092 72 KVQHAFSDLER-GRGYLVPDNVYEVS 96 (104)
Q Consensus 72 ~~~~~f~~~d~-~~g~i~~~e~~~~l 96 (104)
+..+.-+-+|+ ..|.++.+|+.+.-
T Consensus 44 E~aq~IkGldPI~~GQLtreEi~rae 69 (230)
T COG3820 44 EVAQGIKGLDPIANGQLTREEIARAE 69 (230)
T ss_pred hhhccccCCCccccCcccHHHHHhhh
Confidence 44555666777 77777777776543
No 258
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=29.62 E-value=1.7e+02 Score=19.35 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=24.7
Q ss_pred CcceehHHHHHHHHHH------HHHHHHHhhhhcCCCccCHHHHHHHH
Q 034092 55 NGTMSFEEFVELNKFL------LKVQHAFSDLERGRGYLVPDNVYEVS 96 (104)
Q Consensus 55 ~~~i~~~ef~~~~~~~------~~~~~~f~~~d~~~g~i~~~e~~~~l 96 (104)
.|.|+.+|=+..+... +.+...++.++ ||.+||.+++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg-----~t~~ef~~~~ 342 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG-----ISEEEFWKTV 342 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC-----CCHHHHHHHh
Confidence 4778888877776543 34556666666 8888877654
No 259
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=29.39 E-value=74 Score=15.69 Aligned_cols=10 Identities=0% Similarity=0.311 Sum_probs=3.3
Q ss_pred CCHHHHHHHH
Q 034092 38 FSLSVVQQMI 47 (104)
Q Consensus 38 ~~~~~~~~~~ 47 (104)
.+++.+..+|
T Consensus 60 ~~ediLd~IF 69 (73)
T PF12631_consen 60 VTEDILDNIF 69 (73)
T ss_dssp --HHHHHHHH
T ss_pred ChHHHHHHHH
Confidence 3344444443
No 260
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.12 E-value=66 Score=14.45 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=19.8
Q ss_pred CCccc-HHHHHHHHHhCCCCCCHHHHHHHHHH
Q 034092 19 TGSIA-AAQLKHAFAVGNLDFSLSVVQQMIRM 49 (104)
Q Consensus 19 ~g~i~-~~el~~~l~~~~~~~~~~~~~~~~~~ 49 (104)
.|.|+ ..++-+.|...|...+++.++.+.+.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 46665 44455555566778888777776654
No 261
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=29.12 E-value=2.1e+02 Score=20.12 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=38.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHh-CCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHH
Q 034092 4 TAVLREWFDRVDSEKTGSIAAAQLKHAFAV-GNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELN 67 (104)
Q Consensus 4 ~~~~~~~f~~~D~~~~g~i~~~el~~~l~~-~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~ 67 (104)
-+.++.+-+..|.|.+|.|+..|=-.+|+. +...-+...-.. .+- ..+..|+.+++-..+
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~---~fH-~dD~~ItVedLWeaW 127 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSE---KFH-GDDKHITVEDLWEAW 127 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhh---hcc-CCccceeHHHHHHHH
Confidence 356788888999999999999998888875 333333322222 221 235667777765544
No 262
>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO). The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].
Probab=27.97 E-value=88 Score=15.48 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=18.9
Q ss_pred CCCccCHHHHHHHHHhccccCC
Q 034092 83 GRGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~s 104 (104)
+.-..+..++..+|..+|++++
T Consensus 55 gRt~~~~~Dv~~al~~~gi~v~ 76 (77)
T PF07524_consen 55 GRTEPNLQDVEQALEEMGISVN 76 (77)
T ss_pred CCCCCCHHHHHHHHHHhCCCCC
Confidence 6666889999999999999875
No 263
>PF12854 PPR_1: PPR repeat
Probab=27.95 E-value=47 Score=13.49 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=12.4
Q ss_pred eehHHHHHHHHHHHHHHHHHhhhh
Q 034092 58 MSFEEFVELNKFLLKVQHAFSDLE 81 (104)
Q Consensus 58 i~~~ef~~~~~~~~~~~~~f~~~d 81 (104)
++|.-.+..+-+...+.++++.++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 455555555544444555555444
No 264
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=27.91 E-value=81 Score=15.74 Aligned_cols=16 Identities=6% Similarity=-0.053 Sum_probs=9.6
Q ss_pred cCHHHHHHHHHhcccc
Q 034092 87 LVPDNVYEVSFDMVLT 102 (104)
Q Consensus 87 i~~~e~~~~l~~~~~~ 102 (104)
++..+|...|...|++
T Consensus 46 ~s~~eF~~~L~~~gI~ 61 (76)
T PF03683_consen 46 MSRWEFLELLKERGIP 61 (76)
T ss_pred CCHHHHHHHHHHCCCC
Confidence 4556666666666654
No 265
>PF15601 Imm42: Immunity protein 42
Probab=27.76 E-value=1.2e+02 Score=17.35 Aligned_cols=27 Identities=19% Similarity=0.347 Sum_probs=22.4
Q ss_pred CcceehHHHHHHHHHHHHHHHHHhhhh
Q 034092 55 NGTMSFEEFVELNKFLLKVQHAFSDLE 81 (104)
Q Consensus 55 ~~~i~~~ef~~~~~~~~~~~~~f~~~d 81 (104)
.|.+.+++......-++.+++.|+.+.
T Consensus 47 ~g~L~~~~~~~A~~eL~~I~~~l~~~~ 73 (134)
T PF15601_consen 47 RGYLRYEELEKALKELEEIRKELKKFP 73 (134)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 578999999888888888888887764
No 266
>COG5562 Phage envelope protein [General function prediction only]
Probab=27.49 E-value=44 Score=19.05 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=16.9
Q ss_pred hCCCCCCcccHHHHHHHHHhCCC
Q 034092 14 VDSEKTGSIAAAQLKHAFAVGNL 36 (104)
Q Consensus 14 ~D~~~~g~i~~~el~~~l~~~~~ 36 (104)
++.+..|..+++|++..+...|.
T Consensus 81 l~~~qsGqttF~ef~~~la~AGV 103 (137)
T COG5562 81 LRRHQSGQTTFEEFCSALAEAGV 103 (137)
T ss_pred HHHHhcCCccHHHHHHHHHhCCe
Confidence 34566788888888888887763
No 267
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=27.01 E-value=43 Score=14.23 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=9.4
Q ss_pred ccCHHHHHHHHHhcccc
Q 034092 86 YLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 86 ~i~~~e~~~~l~~~~~~ 102 (104)
.++..+++.+|...|+.
T Consensus 3 sltV~~Lk~iL~~~~I~ 19 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIE 19 (35)
T ss_dssp T--SHHHHHHHHHHT--
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 35667777777777665
No 268
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=26.82 E-value=1.7e+02 Score=18.37 Aligned_cols=35 Identities=9% Similarity=0.150 Sum_probs=29.2
Q ss_pred CCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 034092 16 SEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (104)
Q Consensus 16 ~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 50 (104)
.+++|.+...++...+..+...++..++..+-+.+
T Consensus 162 G~gegQVpL~kL~~~l~KLp~~lt~~ev~~v~~RL 196 (224)
T PF13829_consen 162 GNGEGQVPLRKLQKTLMKLPRNLTKAEVDAVNKRL 196 (224)
T ss_pred cCCCCceeHHHHHHHHHhCCccCCHHHHHHHHHHH
Confidence 46789999999999999998889888877765554
No 269
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=26.48 E-value=1.8e+02 Score=18.60 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=24.8
Q ss_pred CCcccHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcce
Q 034092 19 TGSIAAA-QLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTM 58 (104)
Q Consensus 19 ~g~i~~~-el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i 58 (104)
.++++.. .++.+++..+...+....+.+......+.+|.+
T Consensus 197 ~~~~e~~~~~~~~l~~~~~q~~~~~a~~~v~aiE~~~NGai 237 (261)
T KOG4169|consen 197 GGYLEYSDSIKEALERAPKQSPACCAINIVNAIEYPKNGAI 237 (261)
T ss_pred CCcccccHHHHHHHHHcccCCHHHHHHHHHHHHhhccCCcE
Confidence 4555555 467777777766666666666666655555543
No 270
>PF05788 Orbi_VP1: Orbivirus RNA-dependent RNA polymerase (VP1); InterPro: IPR008723 This family consists of the RNA-dependent RNA polymerase protein VP1 from the Orbivirus. VP1 may have both enzymatic and structural roles in the virus life cycle [].; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=26.46 E-value=91 Score=24.35 Aligned_cols=40 Identities=13% Similarity=0.203 Sum_probs=33.3
Q ss_pred CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC
Q 034092 15 DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDR 54 (104)
Q Consensus 15 D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~ 54 (104)
|.---|.|+.+-+..++..+|...+.+.+..+|..++.+.
T Consensus 1131 DvVMRGfiTsn~Il~vle~iG~~h~a~Dl~~iF~lmNl~~ 1170 (1301)
T PF05788_consen 1131 DVVMRGFITSNTILNVLEKIGFGHSASDLATIFTLMNLES 1170 (1301)
T ss_pred hhhhhhhhhhHHHHHHHHHhcCCCCHHHHHHHHHHhcccH
Confidence 3334699999999999999999999999888888886653
No 271
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=26.43 E-value=78 Score=20.95 Aligned_cols=48 Identities=19% Similarity=0.157 Sum_probs=21.9
Q ss_pred hCCCCCcceehHHHHHHHHHH-HHHHHHHhhhh--c--CCCccCHHHHHHHHHhcccc
Q 034092 50 YDFDRNGTMSFEEFVELNKFL-LKVQHAFSDLE--R--GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 50 ~d~~~~~~i~~~ef~~~~~~~-~~~~~~f~~~d--~--~~g~i~~~e~~~~l~~~~~~ 102 (104)
+..+=.|.+=|.|...-+... +.+.++|.... . +.|.|.. ++.++|+.
T Consensus 82 cTaEFSGflLYKEl~rrlk~~~P~lae~F~~MaRDEARHAGFlNk-----am~df~l~ 134 (337)
T TIGR02029 82 CTSEFSGFLLYKELSRRLKNRDPVVAELFQLMARDEARHAGFLNK-----ALGDFGLA 134 (337)
T ss_pred hhhhhhhhHHHHHHHHhcCCCChHHHHHHHHHhhhhHHHhhhHHH-----HHHHcCcc
Confidence 333334555555544333211 34566665443 2 5665543 44555443
No 272
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=26.25 E-value=74 Score=14.69 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=14.1
Q ss_pred HHHhhhhc-CCCccCHHHHHHHHH
Q 034092 75 HAFSDLER-GRGYLVPDNVYEVSF 97 (104)
Q Consensus 75 ~~f~~~d~-~~g~i~~~e~~~~l~ 97 (104)
.+|..+.. +++.+|..|+...+.
T Consensus 10 gI~dii~~~g~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 10 GIPDIIHNAGGGPLSLSEIAARLP 33 (51)
T ss_dssp THHHHHHHHTTS-BEHHHHHHTST
T ss_pred CcHHHHHHcCCCCCCHHHHHHHcC
Confidence 34556666 667788888766443
No 273
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=26.16 E-value=1.5e+02 Score=17.67 Aligned_cols=36 Identities=6% Similarity=0.144 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcc
Q 034092 22 IAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGT 57 (104)
Q Consensus 22 i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~ 57 (104)
++..+.+.-|++.|........+.++..+-.++.|.
T Consensus 2 ~ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~ 37 (186)
T PF12995_consen 2 INSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGA 37 (186)
T ss_pred CChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCc
Confidence 345566677777777666666666666665555553
No 274
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=25.95 E-value=90 Score=14.95 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=11.5
Q ss_pred HHHHHHhhh--hcCCCccCHHHHHHHHHhc
Q 034092 72 KVQHAFSDL--ERGRGYLVPDNVYEVSFDM 99 (104)
Q Consensus 72 ~~~~~f~~~--d~~~g~i~~~e~~~~l~~~ 99 (104)
++...++.+ +++...++.+++..+|..+
T Consensus 16 RIh~mLkmf~~~~~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 16 RIHSMLKMFPKDPGGYDISLEELQEFLDRL 45 (60)
T ss_dssp HHHHHHHHH-GGG--TT--HHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCCCCCHHHHHHHHHHH
Confidence 344444444 2233335666666665543
No 275
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=25.47 E-value=74 Score=13.90 Aligned_cols=20 Identities=15% Similarity=0.498 Sum_probs=14.1
Q ss_pred CCCCCCcccHHHHHHHHHhC
Q 034092 15 DSEKTGSIAAAQLKHAFAVG 34 (104)
Q Consensus 15 D~~~~g~i~~~el~~~l~~~ 34 (104)
+....|.++..+++..++.-
T Consensus 7 ~g~~~GP~s~~el~~l~~~g 26 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISSG 26 (45)
T ss_pred CCeEECCcCHHHHHHHHHcC
Confidence 44456888888888877653
No 276
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=25.06 E-value=74 Score=19.48 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=18.2
Q ss_pred HHHHHhhhhc-CCCccCHHH---HHHHHHhccccC
Q 034092 73 VQHAFSDLER-GRGYLVPDN---VYEVSFDMVLTV 103 (104)
Q Consensus 73 ~~~~f~~~d~-~~g~i~~~e---~~~~l~~~~~~~ 103 (104)
...+|+++-. +.|..+.+- |.++|..+|+++
T Consensus 33 ~~~i~~kiv~~~rGG~C~elN~lf~~lL~~lGf~v 67 (240)
T PF00797_consen 33 PDAIFDKIVRRGRGGYCFELNGLFYWLLRELGFDV 67 (240)
T ss_dssp HHHHHHHHTTTT--B-HHHHHHHHHHHHHHCT-EE
T ss_pred HHHHHHHHHhcCCCeEhHHHHHHHHHHHHHCCCeE
Confidence 4566666655 667776654 777888888765
No 277
>COG5162 Transcription initiation factor TFIID, subunit TAF10 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=24.84 E-value=64 Score=19.09 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=17.7
Q ss_pred CCccCHHHHHHHHHhccccCC
Q 034092 84 RGYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 84 ~g~i~~~e~~~~l~~~~~~~s 104 (104)
.-.++..++..++...|++++
T Consensus 171 K~vltv~DLs~Al~EyGini~ 191 (197)
T COG5162 171 KPVLTVVDLSKALEEYGINIS 191 (197)
T ss_pred CceeeehHHHHHHHHhccccC
Confidence 345788999999999999985
No 278
>COG3077 RelB DNA-damage-inducible protein J [DNA replication, recombination, and repair]
Probab=24.83 E-value=49 Score=17.39 Aligned_cols=7 Identities=14% Similarity=0.169 Sum_probs=3.5
Q ss_pred cCHHHHH
Q 034092 87 LVPDNVY 93 (104)
Q Consensus 87 i~~~e~~ 93 (104)
+|..+..
T Consensus 28 lt~S~ai 34 (88)
T COG3077 28 LTISDAI 34 (88)
T ss_pred CCHHHHH
Confidence 5555533
No 279
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=24.81 E-value=93 Score=14.67 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=13.6
Q ss_pred CCccCHHHHHHHHHhcccc
Q 034092 84 RGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 84 ~g~i~~~e~~~~l~~~~~~ 102 (104)
+|.++.+++.+.....|++
T Consensus 12 ~~~~~~~~~~~~a~~~g~~ 30 (67)
T smart00481 12 DGALSPEELVKRAKELGLK 30 (67)
T ss_pred cccCCHHHHHHHHHHcCCC
Confidence 5667777777777777664
No 280
>TIGR03734 PRTRC_parB PRTRC system ParB family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family the member related to ParB, and is designated PRTRC system ParB family protein.
Probab=24.62 E-value=2.8e+02 Score=20.11 Aligned_cols=15 Identities=13% Similarity=0.211 Sum_probs=9.2
Q ss_pred cCHHHHHHHHHhccc
Q 034092 87 LVPDNVYEVSFDMVL 101 (104)
Q Consensus 87 i~~~e~~~~l~~~~~ 101 (104)
+|..|+...+...|+
T Consensus 499 lTk~e~~~~~~e~G~ 513 (554)
T TIGR03734 499 LTKSEIDALADEIGL 513 (554)
T ss_pred hhHHHHHHHHHHhCH
Confidence 566666666666654
No 281
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=24.62 E-value=1.2e+02 Score=16.00 Aligned_cols=64 Identities=8% Similarity=-0.043 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCC---CCCHHHHHHHHHHhCCCCCcceehHHHHHHHHHHHHHHHHHhhhhc-CCCccCHHHHHHHHHhcc
Q 034092 25 AQLKHAFAVGNL---DFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKFLLKVQHAFSDLER-GRGYLVPDNVYEVSFDMV 100 (104)
Q Consensus 25 ~el~~~l~~~~~---~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~~~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~ 100 (104)
.+++.+-+.++. .+++..++.+-..|+.++- .+.+.+.++.+-. .....+...+.++|+.-+
T Consensus 14 r~WK~laR~Lg~~cral~d~~ID~I~~~y~r~gL--------------~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~ 79 (90)
T cd08780 14 KKWKPVGRSLQKNCRALRDPAIDNLAYEYDREGL--------------YEQAYQLLRRFIQSEGKKATLQRLVQALEENG 79 (90)
T ss_pred HHHHHHHHHHcccccccchhHHHHHHhhcccccH--------------HHHHHHHHHHHHHhccccchHHHHHHHHHHcc
Confidence 466666676663 3777777777666654421 1444555666655 444478888888887766
Q ss_pred cc
Q 034092 101 LT 102 (104)
Q Consensus 101 ~~ 102 (104)
++
T Consensus 80 l~ 81 (90)
T cd08780 80 LT 81 (90)
T ss_pred ch
Confidence 54
No 282
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=24.32 E-value=55 Score=16.42 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=9.6
Q ss_pred HHHHHHHHhccccCC
Q 034092 90 DNVYEVSFDMVLTVS 104 (104)
Q Consensus 90 ~e~~~~l~~~~~~~s 104 (104)
.++.+..+.+|+|+|
T Consensus 11 ~dll~~ar~~giNlS 25 (72)
T PRK13710 11 SDSYQLLKAADVNIS 25 (72)
T ss_pred HHHHHHHHHcCCcHH
Confidence 345566666777765
No 283
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 2ONH_A 2ONG_B 3P5R_A 3P5P_A 3N0F_A 3N0G_B 3PYB_A 3PYA_A 3G4F_A 3G4D_B ....
Probab=24.15 E-value=1.7e+02 Score=17.55 Aligned_cols=16 Identities=6% Similarity=0.102 Sum_probs=9.2
Q ss_pred cccHHHHHHHHHhCCC
Q 034092 21 SIAAAQLKHAFAVGNL 36 (104)
Q Consensus 21 ~i~~~el~~~l~~~~~ 36 (104)
.+..-++...++.+|.
T Consensus 46 ~~~~L~lID~lqRLGi 61 (183)
T PF01397_consen 46 PLEKLELIDTLQRLGI 61 (183)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 4444456666666665
No 284
>COG2058 RPP1A Ribosomal protein L12E/L44/L45/RPP1/RPP2 [Translation, ribosomal structure and biogenesis]
Probab=24.06 E-value=1.4e+02 Score=16.42 Aligned_cols=40 Identities=13% Similarity=0.380 Sum_probs=32.2
Q ss_pred cccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHH
Q 034092 21 SIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVE 65 (104)
Q Consensus 21 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~ 65 (104)
.|+-+.++.+++..|..+....++.++..+. | ++.++.+.
T Consensus 16 ei~e~~l~~vl~aaGveve~~r~k~lvaaLe----g-~~idE~i~ 55 (109)
T COG2058 16 EITEDNLKSVLEAAGVEVEEARAKALVAALE----G-VDIDEVIK 55 (109)
T ss_pred cCCHHHHHHHHHHcCCCccHHHHHHHHHHhc----C-CCHHHHHH
Confidence 8999999999999999999999988887773 2 35555443
No 285
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=23.96 E-value=1.5e+02 Score=16.78 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=12.4
Q ss_pred hhhc-CCCccCHHHHHHHHHhccc
Q 034092 79 DLER-GRGYLVPDNVYEVSFDMVL 101 (104)
Q Consensus 79 ~~d~-~~g~i~~~e~~~~l~~~~~ 101 (104)
.++. ...+|..+.+..+|..+++
T Consensus 57 ~ce~EaKKTIa~EHviKALenLef 80 (148)
T COG5150 57 ACEEEAKKTIAYEHVIKALENLEF 80 (148)
T ss_pred HHHHHHhccccHHHHHHHHHhccH
Confidence 3344 4455666666666655544
No 286
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.92 E-value=1.6e+02 Score=17.21 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHH
Q 034092 26 QLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNK 68 (104)
Q Consensus 26 el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~ 68 (104)
.+...|+..|...+..... ++..+... ++.++-++....+.
T Consensus 12 ~~~~~L~~~GlR~T~qR~~-IL~~l~~~-~~hlSa~eI~~~L~ 52 (169)
T PRK11639 12 QAEKLCAQRNVRLTPQRLE-VLRLMSLQ-PGAISAYDLLDLLR 52 (169)
T ss_pred HHHHHHHHcCCCCCHHHHH-HHHHHHhc-CCCCCHHHHHHHHH
Confidence 4566677777777766542 33333322 45677776555544
No 287
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=23.55 E-value=66 Score=19.62 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=18.4
Q ss_pred HhhCCCCCCcccHHHHHHHHHhC
Q 034092 12 DRVDSEKTGSIAAAQLKHAFAVG 34 (104)
Q Consensus 12 ~~~D~~~~g~i~~~el~~~l~~~ 34 (104)
.-+|.|++|.++.+|+..+....
T Consensus 57 ~~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 57 EGLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred HhhhhcccCCCCHHHHHHHHHHH
Confidence 35689999999999988877643
No 288
>PF09412 XendoU: Endoribonuclease XendoU; InterPro: IPR018998 This is a entry represents endoribonucleases involved in RNA biosynthesis which has been named XendoU in Xenopus laevis (African clawed frog). XendoU is a U-specific metal dependent enzyme that produces products with a 2'-3' cyclic phosphate termini. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 2C1W_C.
Probab=23.20 E-value=1.5e+02 Score=19.03 Aligned_cols=32 Identities=9% Similarity=-0.107 Sum_probs=22.5
Q ss_pred HHHHHHHhhhhc-CCCccCHHHHHHHHHhcccc
Q 034092 71 LKVQHAFSDLER-GRGYLVPDNVYEVSFDMVLT 102 (104)
Q Consensus 71 ~~~~~~f~~~d~-~~g~i~~~e~~~~l~~~~~~ 102 (104)
+-++.+++.+-. +--..+.++|+..|..+.+.
T Consensus 102 ~vmk~~~~fL~~k~~~~~~~~~Fk~~L~~iWF~ 134 (265)
T PF09412_consen 102 KVMKLAHQFLVSKGLAPSDEAEFKKQLKNIWFG 134 (265)
T ss_dssp HHHHHHHHHHHHTTSS-SSHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCc
Confidence 556777777776 55567888888888877553
No 289
>PF11171 DUF2958: Protein of unknown function (DUF2958); InterPro: IPR021341 Some members are annotated as lipoproteins however this cannot be confirmed. This family of proteins has no known function.
Probab=22.88 E-value=34 Score=18.83 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=12.6
Q ss_pred CCccCHHHHHHHHHhccccC
Q 034092 84 RGYLVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 84 ~g~i~~~e~~~~l~~~~~~~ 103 (104)
=|+++++|+..+-..+|++|
T Consensus 66 lGyvsL~EL~~v~~~~gl~I 85 (112)
T PF11171_consen 66 LGYVSLSELESVRGPLGLPI 85 (112)
T ss_pred eeEEEHHHHHhccCcCCCce
Confidence 36677777777665555543
No 290
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=22.82 E-value=1.4e+02 Score=16.14 Aligned_cols=29 Identities=7% Similarity=0.224 Sum_probs=26.6
Q ss_pred ccHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 034092 22 IAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (104)
Q Consensus 22 i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 50 (104)
++..+++.+|...+..+....+..+++.+
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aL 45 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSAL 45 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 99999999999999999999888888776
No 291
>PRK03745 signal recognition particle protein Srp19; Provisional
Probab=22.48 E-value=1e+02 Score=16.63 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=13.8
Q ss_pred cCHHHHHHHHHhccccC
Q 034092 87 LVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 87 i~~~e~~~~l~~~~~~~ 103 (104)
-+..|+..++..+|++.
T Consensus 32 P~~~EI~~a~~~lgl~~ 48 (100)
T PRK03745 32 PTLEEIVDAAEALGFKV 48 (100)
T ss_pred CCHHHHHHHHHHcCCCc
Confidence 57788888999888874
No 292
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=22.24 E-value=94 Score=13.82 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHH
Q 034092 25 AQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFV 64 (104)
Q Consensus 25 ~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~ 64 (104)
+|...+|..+| .+..++...+..... ....+.++.+
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~i 39 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELI 39 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHH
Confidence 46667777666 555666666666543 2224455443
No 293
>PF05901 Excalibur: Excalibur calcium-binding domain; InterPro: IPR008613 Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognised and the evolution of EF-hand-like domains is probably more complex than previously appreciated [].
Probab=22.20 E-value=49 Score=14.04 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=5.6
Q ss_pred hhCCCCCCc
Q 034092 13 RVDSEKTGS 21 (104)
Q Consensus 13 ~~D~~~~g~ 21 (104)
.+|.|++|.
T Consensus 26 ~LDrD~DGi 34 (37)
T PF05901_consen 26 KLDRDGDGI 34 (37)
T ss_pred cccCCCCCC
Confidence 457777764
No 294
>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....
Probab=21.97 E-value=86 Score=16.55 Aligned_cols=16 Identities=6% Similarity=0.077 Sum_probs=12.2
Q ss_pred cCHHHHHHHHHhcccc
Q 034092 87 LVPDNVYEVSFDMVLT 102 (104)
Q Consensus 87 i~~~e~~~~l~~~~~~ 102 (104)
.+.+|+..++..+|++
T Consensus 29 P~~~EI~~a~~~Lgl~ 44 (95)
T PF01922_consen 29 PTLEEIADACKKLGLP 44 (95)
T ss_dssp --HHHHHHHHHHTTSE
T ss_pred CCHHHHHHHHHHcCCC
Confidence 6788999999999876
No 295
>PRK00754 signal recognition particle protein Srp19; Provisional
Probab=21.96 E-value=1e+02 Score=16.40 Aligned_cols=16 Identities=13% Similarity=0.102 Sum_probs=13.5
Q ss_pred cCHHHHHHHHHhcccc
Q 034092 87 LVPDNVYEVSFDMVLT 102 (104)
Q Consensus 87 i~~~e~~~~l~~~~~~ 102 (104)
.+.+|+..++..+|++
T Consensus 35 P~~~EI~~a~~~lgl~ 50 (95)
T PRK00754 35 PRLEEIIEAAEKLGLN 50 (95)
T ss_pred CCHHHHHHHHHHcCCC
Confidence 6788899999988876
No 296
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=21.82 E-value=1.5e+02 Score=15.98 Aligned_cols=34 Identities=6% Similarity=0.054 Sum_probs=26.6
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHHh
Q 034092 17 EKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMY 50 (104)
Q Consensus 17 ~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 50 (104)
+.+..++..+++.++...|..+....+..+.+.+
T Consensus 13 d~~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L 46 (103)
T cd05831 13 DDGIEITADNINALLKAAGVNVEPYWPGLFAKAL 46 (103)
T ss_pred cCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 3345789999999999999888777777666665
No 297
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=21.55 E-value=1.1e+02 Score=14.57 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=11.0
Q ss_pred HHhhCCCCCCcccHHHHH
Q 034092 11 FDRVDSEKTGSIAAAQLK 28 (104)
Q Consensus 11 f~~~D~~~~g~i~~~el~ 28 (104)
....+.+++|.|+...+.
T Consensus 21 ~~~~~~~~~g~Vpi~~i~ 38 (61)
T PF05383_consen 21 RSQMDSNPDGWVPISTIL 38 (61)
T ss_dssp HHHHCTTTTTBEEHHHHT
T ss_pred HHHHHhcCCCcEeHHHHH
Confidence 345566667777776543
No 298
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=21.50 E-value=1e+02 Score=13.87 Aligned_cols=16 Identities=6% Similarity=0.015 Sum_probs=10.9
Q ss_pred HHHHHHHHHhccccCC
Q 034092 89 PDNVYEVSFDMVLTVS 104 (104)
Q Consensus 89 ~~e~~~~l~~~~~~~s 104 (104)
-.++...|+.+|.|++
T Consensus 3 d~eV~~~LR~lgePi~ 18 (44)
T smart00500 3 DSEVIRRLRELGEPIT 18 (44)
T ss_pred HHHHHHHHHHcCCCee
Confidence 3566777888877753
No 299
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=21.50 E-value=1e+02 Score=19.23 Aligned_cols=21 Identities=14% Similarity=-0.034 Sum_probs=17.9
Q ss_pred CCCccCHHHHHHHHHhccccC
Q 034092 83 GRGYLVPDNVYEVSFDMVLTV 103 (104)
Q Consensus 83 ~~g~i~~~e~~~~l~~~~~~~ 103 (104)
..|.++..++...|...|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 233 HYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred hCCCCCHHHHHHHHHHCCCcc
Confidence 467899999999999998875
No 300
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=21.32 E-value=1.4e+02 Score=15.49 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=28.4
Q ss_pred CCcccHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCcceehHHHHHHHHH
Q 034092 19 TGSIAAAQLKHAFAVGNLDFSLSVVQQMIRMYDFDRNGTMSFEEFVELNKF 69 (104)
Q Consensus 19 ~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~~~i~~~ef~~~~~~ 69 (104)
.|.++..+...+-. .+...+....++...... |.-.|..|+..+..
T Consensus 32 ~gvlt~~~~~~I~~---~~t~~~k~~~Lld~L~~R--G~~AF~~F~~aL~~ 77 (90)
T cd08332 32 KDILTDSMAESIMA---KPTSFSQNVALLNLLPKR--GPRAFSAFCEALRE 77 (90)
T ss_pred cCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHHh--ChhHHHHHHHHHHh
Confidence 47777766555432 234456666676666444 55778888888753
No 301
>PRK04280 arginine repressor; Provisional
Probab=21.22 E-value=89 Score=18.01 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=12.3
Q ss_pred CHHHHHHHHHhccccCC
Q 034092 88 VPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 88 ~~~e~~~~l~~~~~~~s 104 (104)
+-+|+...|...|+.+|
T Consensus 20 tQeeL~~~L~~~Gi~vT 36 (148)
T PRK04280 20 TQDELVDRLREEGFNVT 36 (148)
T ss_pred CHHHHHHHHHHcCCCee
Confidence 56777778877777664
No 302
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.98 E-value=1.6e+02 Score=16.47 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhc--CCCccCHH---HHHHHHHhccc
Q 034092 60 FEEFVELNKFLLKVQHAFSDLER--GRGYLVPD---NVYEVSFDMVL 101 (104)
Q Consensus 60 ~~ef~~~~~~~~~~~~~f~~~d~--~~g~i~~~---e~~~~l~~~~~ 101 (104)
.-+|+..+.. ..+++.+++- +.|-|+.+ +|...|...|+
T Consensus 67 ViD~lrRC~T---~EEALEVInylek~GEIt~e~A~eLr~~L~~kGv 110 (128)
T PF09868_consen 67 VIDYLRRCKT---DEEALEVINYLEKRGEITPEEAKELRSILVKKGV 110 (128)
T ss_pred HHHHHHHhCc---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhH
Confidence 3444444444 4555666665 67778764 46666666654
No 303
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.42 E-value=2.5e+02 Score=18.86 Aligned_cols=47 Identities=11% Similarity=0.086 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhh------CCCCCCcccHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 034092 2 ENTAVLREWFDRV------DSEKTGSIAAAQLKHAFAVGNLDFSLSVVQQMIRM 49 (104)
Q Consensus 2 ~~~~~~~~~f~~~------D~~~~g~i~~~el~~~l~~~~~~~~~~~~~~~~~~ 49 (104)
++.++++.+|+++ |+|.+...-..+|+++=.+ --.++++..++.+..
T Consensus 28 Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~A-YEVLsDpekRk~YD~ 80 (336)
T KOG0713|consen 28 ASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAA-YEVLSDPEKRKHYDT 80 (336)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HHHhcCHHHHHHHHh
Confidence 3556777777766 6666666655566554332 123444444544443
No 304
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=20.38 E-value=3.7e+02 Score=21.46 Aligned_cols=24 Identities=13% Similarity=0.277 Sum_probs=20.4
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHH
Q 034092 8 REWFDRVDSEKTGSIAAAQLKHAF 31 (104)
Q Consensus 8 ~~~f~~~D~~~~g~i~~~el~~~l 31 (104)
..+|....+|..|.|+.+.+..-+
T Consensus 4 ~~iY~~~CpNCGG~isseRL~~gl 27 (1187)
T COG1110 4 NAIYGSSCPNCGGDISSERLEKGL 27 (1187)
T ss_pred hhhhhccCCCCCCcCcHHHHhcCC
Confidence 467888899999999999887766
No 305
>PF02042 RWP-RK: RWP-RK domain; InterPro: IPR003035 This domain is named RWP-RK after a conserved motif at the C terminus of the domain. The domain is found in algal minus dominance proteins as well as plant proteins involved in nitrogen-controlled development [].
Probab=20.37 E-value=1.2e+02 Score=14.20 Aligned_cols=16 Identities=0% Similarity=-0.068 Sum_probs=12.0
Q ss_pred cCHHHHHHHHHhcccc
Q 034092 87 LVPDNVYEVSFDMVLT 102 (104)
Q Consensus 87 i~~~e~~~~l~~~~~~ 102 (104)
|+...+...|+.+|++
T Consensus 27 v~~T~LKr~CR~~GI~ 42 (52)
T PF02042_consen 27 VSVTTLKRRCRRLGIP 42 (52)
T ss_pred CCHHHHHHHHHHcCCC
Confidence 6777778888888764
No 306
>TIGR00158 L9 ribosomal protein L9. Ribosomal protein L9 appears to be universal in, but restricted to, eubacteria and chloroplast.
Probab=20.32 E-value=1e+02 Score=17.76 Aligned_cols=20 Identities=10% Similarity=0.154 Sum_probs=16.4
Q ss_pred CccCHHHHHHHHHhccccCC
Q 034092 85 GYLVPDNVYEVSFDMVLTVS 104 (104)
Q Consensus 85 g~i~~~e~~~~l~~~~~~~s 104 (104)
|.||..++...+...|+.+.
T Consensus 91 GSVt~~~I~~~l~~~g~~id 110 (148)
T TIGR00158 91 GSITTKQIADALKAAGLDLD 110 (148)
T ss_pred EeECHHHHHHHHHHcCCccc
Confidence 67999999988887787763
No 307
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=20.13 E-value=2.3e+02 Score=17.54 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=22.8
Q ss_pred CcceehHHHHHHHHHH------------------HHHHHHHhhhhc-CCCccC
Q 034092 55 NGTMSFEEFVELNKFL------------------LKVQHAFSDLER-GRGYLV 88 (104)
Q Consensus 55 ~~~i~~~ef~~~~~~~------------------~~~~~~f~~~d~-~~g~i~ 88 (104)
.|.++|+.++.-+.++ +.+..--+.||+ ..|.|-
T Consensus 175 ~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~~Aa~kLI~F~qSfDPdSte~I~ 227 (246)
T PF10897_consen 175 KGELDFNDILDKMKLQVNEGKLDPDIITKMRDAAPKLIKFVQSFDPDSTEPIK 227 (246)
T ss_pred cCCCcHHHHHHHHHHhhccCCcCcHHHHHHHHhhHHHHHHHHhcCCCCcCcee
Confidence 4678888888877654 344455677888 666653
Done!