Query 034094
Match_columns 104
No_of_seqs 104 out of 179
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 16:27:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034094.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034094hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lif_A Core protein P21; signa 88.1 0.09 3.1E-06 25.6 0.0 20 8-27 3-22 (27)
2 3mk7_C Cytochrome C oxidase, C 36.7 14 0.00046 26.8 1.5 24 8-31 2-25 (311)
3 1eys_H Photosynthetic reaction 27.0 55 0.0019 23.6 3.3 21 70-90 12-32 (259)
4 1rzh_H Reaction center protein 25.6 61 0.0021 23.5 3.3 21 70-90 13-33 (260)
5 2knc_A Integrin alpha-IIB; tra 25.5 76 0.0026 17.4 3.0 34 1-34 3-36 (54)
6 1ews_A RK-1 defensin, alpha-de 24.5 14 0.00049 17.8 -0.2 8 97-104 8-15 (32)
7 2wjn_H Reaction center protein 16.8 96 0.0033 22.4 2.8 20 70-89 13-33 (258)
8 1q90_M Cytochrome B6F complex 16.7 1.3E+02 0.0044 15.4 3.3 25 70-95 13-37 (39)
9 2gpv_G Nuclear receptor corepr 15.4 35 0.0012 15.9 0.1 7 1-7 14-20 (26)
10 3s8f_C Cytochrome C oxidase po 15.4 1.3E+02 0.0044 14.9 2.2 13 72-84 17-29 (34)
No 1
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=88.05 E-value=0.09 Score=25.58 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=17.6
Q ss_pred CCchhHHHHHHHhhhhhhhh
Q 034094 8 SQLFPIFILTIMALPLVPYT 27 (104)
Q Consensus 8 g~~f~yFvlt~l~lvLiP~T 27 (104)
|--|++|+|+++++.++|..
T Consensus 3 gcsfsiFlLaLlscLt~Pas 22 (27)
T 2lif_A 3 GFPFSIFLLALLSCITVPVS 22 (27)
Confidence 55789999999999999985
No 2
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=36.65 E-value=14 Score=26.82 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=15.4
Q ss_pred CCchhHHHHHHHhhhhhhhhhhhh
Q 034094 8 SQLFPIFILTIMALPLVPYTILKL 31 (104)
Q Consensus 8 g~~f~yFvlt~l~lvLiP~T~~~l 31 (104)
+++|.+|+..+....++-+++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (311)
T 3mk7_C 2 STFWSGYIALLTLGTIVALFWLIF 25 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 457888886666666665555444
No 3
>1eys_H Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: b.41.1.1 f.23.10.1
Probab=26.98 E-value=55 Score=23.64 Aligned_cols=21 Identities=19% Similarity=0.676 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 034094 70 SNLSLVLLWVIMIILIYYIKS 90 (104)
Q Consensus 70 ~~i~lv~gW~l~~~L~y~i~~ 90 (104)
--++|-+.|+.|+.|+|....
T Consensus 12 a~~~~~~fw~ffa~li~yl~~ 32 (259)
T 1eys_H 12 AQITIWAFWLFFFGLIIYLRR 32 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 446677899999999988753
No 4
>1rzh_H Reaction center protein H chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: b.41.1.1 f.23.10.1 PDB: 1e14_H* 1f6n_H* 1fnp_H* 1fnq_H* 1jgw_H* 1jgx_H* 1jgy_H* 1jgz_H* 1jh0_H* 1k6l_H* 1k6n_H* 1kby_H* 1l9b_H* 1l9j_H* 1m3x_H* 1mps_H* 1pcr_H* 1e6d_H* 1rg5_H* 1rgn_H* ...
Probab=25.60 E-value=61 Score=23.48 Aligned_cols=21 Identities=29% Similarity=0.855 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 034094 70 SNLSLVLLWVIMIILIYYIKS 90 (104)
Q Consensus 70 ~~i~lv~gW~l~~~L~y~i~~ 90 (104)
--++|-+.|+.|+.|+|....
T Consensus 13 Aq~~l~~Fw~ffa~Li~yL~~ 33 (260)
T 1rzh_H 13 ASLAIYSFWIFLAGLIYYLQT 33 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 446677899999999988753
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=25.55 E-value=76 Score=17.42 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=18.3
Q ss_pred CCccccCCCchhHHHHHHHhhhhhhhhhhhhhcc
Q 034094 1 MAATEENSQLFPIFILTIMALPLVPYTILKLCHA 34 (104)
Q Consensus 1 ~~~YDE~g~~f~yFvlt~l~lvLiP~T~~~l~~~ 34 (104)
|++=+++=..|.+.+..+.++.++.+-...++|.
T Consensus 3 ~~~~~~~vp~wiIi~svl~GLllL~li~~~LwK~ 36 (54)
T 2knc_A 3 MGSEERAIPIWWVLVGVLGGLLLLTILVLAMWKV 36 (54)
T ss_dssp TTCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444455666655555666555555555544
No 6
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=24.48 E-value=14 Score=17.81 Aligned_cols=8 Identities=25% Similarity=0.106 Sum_probs=5.4
Q ss_pred ccCCcccC
Q 034094 97 NMGPQIQI 104 (104)
Q Consensus 97 ~fDPyei~ 104 (104)
--||+|+|
T Consensus 8 ycdpwevi 15 (32)
T 1ews_A 8 YCDPWEVI 15 (32)
T ss_dssp SCCTTEEE
T ss_pred ccChhhee
Confidence 45888765
No 7
>2wjn_H Reaction center protein H chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 1prc_H* 1r2c_H* 1vrn_H* 1dxr_H* 2jbl_H* 2prc_H* 2i5n_H* 2wjm_H* 2x5u_H* 2x5v_H* 3d38_H* 3prc_H* 3t6e_H* 4ac5_H* 5prc_H* 6prc_H* 7prc_H* 3t6d_H* 3g7f_H*
Probab=16.85 E-value=96 Score=22.41 Aligned_cols=20 Identities=15% Similarity=0.627 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHH-HHHH
Q 034094 70 SNLSLVLLWVIMIILI-YYIK 89 (104)
Q Consensus 70 ~~i~lv~gW~l~~~L~-y~i~ 89 (104)
--++|-+.|+.|+.|+ |...
T Consensus 13 aq~~l~~Fw~ffa~Li~~yl~ 33 (258)
T 2wjn_H 13 AQLVWYAQWLVIWTVVLLYLR 33 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 4466778999999998 7764
No 8
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=16.66 E-value=1.3e+02 Score=15.42 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Q 034094 70 SNLSLVLLWVIMIILIYYIKSTSREV 95 (104)
Q Consensus 70 ~~i~lv~gW~l~~~L~y~i~~~~~~~ 95 (104)
-+.+.++||++=+.| -|+....+++
T Consensus 13 ~~~L~LvGla~Gf~L-Lkiqg~~ee~ 37 (39)
T 1q90_M 13 MVGMTLVGLAIGFVL-LRVESLVEEG 37 (39)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTC--
T ss_pred HHHHHHHHHHHHHHH-hhhhcchhhc
Confidence 445566699887666 6765444443
No 9
>2gpv_G Nuclear receptor corepressor 2; estrogen related receptor, ERR, ERRG, ESRRG, nuclear recepto steroid receptor, SMRT, tamoxifen, transcription; HET: OHT; 2.85A {Homo sapiens}
Probab=15.43 E-value=35 Score=15.87 Aligned_cols=7 Identities=14% Similarity=0.159 Sum_probs=4.9
Q ss_pred CCccccC
Q 034094 1 MAATEEN 7 (104)
Q Consensus 1 ~~~YDE~ 7 (104)
|+.|||.
T Consensus 14 mg~yd~~ 20 (26)
T 2gpv_G 14 MGKYDQW 20 (26)
T ss_pred ccchhhH
Confidence 6778764
No 10
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=15.40 E-value=1.3e+02 Score=14.94 Aligned_cols=13 Identities=15% Similarity=0.700 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q 034094 72 LSLVLLWVIMIIL 84 (104)
Q Consensus 72 i~lv~gW~l~~~L 84 (104)
.++++.|..+..+
T Consensus 17 ~~I~i~W~~vf~l 29 (34)
T 3s8f_C 17 LTILVFWLGVYAV 29 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHee
Confidence 3556688877654
Done!