BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034095
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 70.1 bits (170), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 69 RIQADQTPEDL 79
>pdb|1A5R|A Chain A, Structure Determination Of The Small Ubiquitin-Related
Modifier Sumo-1, Nmr, 10 Structures
Length = 103
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL 74
DKK + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+
Sbjct: 17 DKK---EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI 73
Query: 75 RGEQTPDEV 83
TP E+
Sbjct: 74 ADNHTPKEL 82
>pdb|3KYD|D Chain D, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 115
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL 74
DKK + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+
Sbjct: 34 DKK---EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI 90
Query: 75 RGEQTPDEV 83
TP E+
Sbjct: 91 ADNHTPKEL 99
>pdb|1Z5S|B Chain B, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2IO2|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1-sumo-1
Length = 82
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 45/65 (69%)
Query: 19 VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQ 78
+ + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+
Sbjct: 1 MGEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNH 60
Query: 79 TPDEV 83
TP E+
Sbjct: 61 TPKEL 65
>pdb|2IY0|B Chain B, Senp1 (Mutant) Sumo1 Rangap
Length = 82
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 43/60 (71%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP E+
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61
>pdb|1TGZ|B Chain B, Structure Of Human Senp2 In Complex With Sumo-1
pdb|3UIP|B Chain B, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 44/63 (69%)
Query: 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTP 80
+ +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP
Sbjct: 1 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP 60
Query: 81 DEV 83
E+
Sbjct: 61 KEL 63
>pdb|2IY1|B Chain B, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|D Chain D, Senp1 (Mutant) Full Length Sumo1
Length = 83
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 43/60 (71%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP E+
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61
>pdb|1Y8R|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|F Chain F, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1WYW|B Chain B, Crystal Structure Of Sumo1-Conjugated Thymine Dna
Glycosylase
pdb|2PE6|B Chain B, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
pdb|2ASQ|A Chain A, Solution Structure Of Sumo-1 In Complex With A
Sumo-Binding Motif (Sbm)
Length = 97
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL 74
DKK + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+
Sbjct: 15 DKK---EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI 71
Query: 75 RGEQTPDEV 83
TP E+
Sbjct: 72 ADNHTPKEL 80
>pdb|2KQS|A Chain A, Phosphorylation Of Sumo-Interacting Motif By Ck2
Enhances Daxx Sumo Binding Activity
Length = 99
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL 74
DKK + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+
Sbjct: 17 DKK---EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI 73
Query: 75 RGEQTPDEV 83
TP E+
Sbjct: 74 ADNHTPKEL 82
>pdb|3KYC|D Chain D, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 97
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Query: 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL 74
DKK + +I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+
Sbjct: 15 DKK---EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRI 71
Query: 75 RGEQTPDEV 83
TP E+
Sbjct: 72 ADNHTPKEL 80
>pdb|1WZ0|A Chain A, Solution Structure Of Human Sumo-2 (Smt3b), A Ubiquitin-
Like Protein
Length = 104
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 15 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF 69
D+KP + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F F
Sbjct: 10 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 69
Query: 70 DGRRLRGEQTP 80
DG+ + TP
Sbjct: 70 DGQPINETDTP 80
>pdb|2UYZ|B Chain B, Non-Covalent Complex Between Ubc9 And Sumo1
pdb|2VRR|B Chain B, Structure Of Sumo Modified Ubc9
Length = 79
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 43/60 (71%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP E+
Sbjct: 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 62
>pdb|2BF8|B Chain B, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 77
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 43/60 (71%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP E+
Sbjct: 1 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 60
>pdb|2G4D|B Chain B, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2G4D|D Chain D, Crystal Structure Of Human Senp1 Mutant (C603s) In
Complex With Sumo-1
pdb|2LAS|A Chain A, Molecular Determinants Of Paralogue-Specific Sumo-Sim
Recognition
Length = 78
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 43/60 (71%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
+I LKV GQD +E+ F++K +T LKKL +YC RQ V +NS+ FLF+G+R+ TP E+
Sbjct: 2 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKEL 61
>pdb|2D07|B Chain B, Crystal Structure Of Sumo-3-Modified Thymine-Dna
Glycosylase
pdb|2RPQ|A Chain A, Solution Structure Of A Sumo-Interacting Motif Of Mbd1-
Containing Chromatin-Associated Factor 1 Bound To
Sumo-3
Length = 93
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 15 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF 69
D+KP + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F F
Sbjct: 3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62
Query: 70 DGRRLRGEQTP 80
DG+ + TP
Sbjct: 63 DGQPINETDTP 73
>pdb|2AWT|A Chain A, Solution Structure Of Human Small Ubiquitin-Like
Modifier Protein Isoform 2 (Sumo-2)
Length = 95
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 15 DKKP-----VDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF 69
D+KP + + HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F F
Sbjct: 3 DEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRF 62
Query: 70 DGRRLRGEQTP 80
DG+ + TP
Sbjct: 63 DGQPINETDTP 73
>pdb|2IO1|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
pdb|2IO1|D Chain D, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
pdb|2IO1|F Chain F, Crystal Structure Of Human Senp2 In Complex With
Presumo-3
Length = 94
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP ++
Sbjct: 7 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 66
>pdb|3V7O|A Chain A, Crystal Structure Of The C-Terminal Domain Of Ebola
Virus Vp30 (Strain Reston-89)
pdb|3V7O|B Chain B, Crystal Structure Of The C-Terminal Domain Of Ebola
Virus Vp30 (Strain Reston-89)
Length = 227
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 69 RIQADQTPEDL 79
>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Fk506
pdb|4FN2|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4FN2|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj37
pdb|4G50|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4G50|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj168
pdb|4GIV|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
pdb|4GIV|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation D44g From
Burkholderia Pseudomallei Complexed With Cj183
Length = 209
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 69 RIQADQTPEDL 79
>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With A G95a Surface Mutation From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 69 RIQADQTPEDL 79
>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|B Chain B, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
pdb|4GGQ|D Chain D, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase From Burkholderia Pseudomallei
Complexed With Cj40
Length = 209
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 69 RIQADQTPEDL 79
>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation V3i From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 69 RIQADQTPEDL 79
>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl
Cis-Trans Isomerase With Surface Mutation A54e From
Burkholderia Pseudomallei Complexed With Fk506
Length = 209
Score = 68.6 bits (166), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 11 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 68
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 69 RIQADQTPEDL 79
>pdb|2IO3|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Rangap1- Sumo-2
Length = 81
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP ++
Sbjct: 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 64
>pdb|1WM3|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 72
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP ++
Sbjct: 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 60
>pdb|2IO0|B Chain B, Crystal Structure Of Human Senp2 In Complex With
Presumo-2
Length = 91
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP ++
Sbjct: 5 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 64
>pdb|2IYD|B Chain B, Senp1 Covalent Complex With Sumo-2
Length = 81
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP ++
Sbjct: 3 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 62
>pdb|1WM2|A Chain A, Crystal Structure Of Human Sumo-2 Protein
Length = 78
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 39/57 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTP 80
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP
Sbjct: 6 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTP 62
>pdb|2CKH|B Chain B, Senp1-sumo2 Complex
Length = 79
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP ++
Sbjct: 3 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 62
>pdb|3UIN|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
pdb|3UIO|B Chain B, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 80
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 41/60 (68%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEV 83
HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + + I F FDG+ + TP ++
Sbjct: 4 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQL 63
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 19 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 76
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 77 RIQADQTPEDL 87
>pdb|1L2N|A Chain A, Smt3 Solution Structure
Length = 101
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 13 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 70
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 71 RIQADQTPEDL 81
>pdb|1EUV|B Chain B, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain
In Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 86
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 1 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 58
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 59 RIQADQTPEDL 69
>pdb|2EKE|C Chain C, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|D Chain D, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 106
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 21 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 78
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 79 RIQADQTPEDL 89
>pdb|2K1F|A Chain A, Sumo-3 From Drosophila Melanogaster (Dsmt3)
Length = 88
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 43/66 (65%)
Query: 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL 74
D+K ++ HINLKV GQD V F+IK+ T L+KLMNAYCDR + + + F FDG+ +
Sbjct: 3 DEKKGGETEHINLKVLGQDNAVVQFKIKKHTPLRKLMNAYCDRAGLSMQVVRFRFDGQPI 62
Query: 75 RGEQTP 80
TP
Sbjct: 63 NENDTP 68
>pdb|3QHT|A Chain A, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
pdb|3QHT|B Chain B, Crystal Structure Of The Monobody Ysmb-1 Bound To Yeast
Sumo
Length = 98
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 13 EVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGI 70
Query: 73 RLRGEQTPDEV 83
R++ +QTP+++
Sbjct: 71 RIQADQTPEDL 81
>pdb|3RZW|C Chain C, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
pdb|3RZW|D Chain D, Crystal Structure Of The Monobody Ysmb-9 Bound To Human
Sumo1
Length = 99
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL 74
DKK + +I LKV GQD +E+ F++K +T LKKL +Y RQ V +NS+ FLF+G+R+
Sbjct: 17 DKK---EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYAQRQGVPMNSLRFLFEGQRI 73
Query: 75 RGEQTPDEV 83
TP E+
Sbjct: 74 ADNHTPKEL 82
>pdb|3TIX|A Chain A, Crystal Structure Of The Chp1-Tas3 Complex Core
pdb|3TIX|C Chain C, Crystal Structure Of The Chp1-Tas3 Complex Core
Length = 207
Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 14 EDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72
E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG
Sbjct: 47 EVKPEVKPETHINLKVS--DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGI 104
Query: 73 RLRGEQTPDEV 83
++ +QTP+++
Sbjct: 105 EIQADQTPEDL 115
>pdb|4DA1|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase Phosphatase With Mg (Ii) Ions At The
Active Site
Length = 389
Score = 66.2 bits (160), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 3/73 (4%)
Query: 12 QEEDKKPVDQSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD 70
+ E K V HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+D
Sbjct: 18 KPEVKPEVKPETHINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYD 75
Query: 71 GRRLRGEQTPDEV 83
G R++ +Q P+++
Sbjct: 76 GIRIQADQAPEDL 88
>pdb|3V60|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|A Chain A, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
Length = 84
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 48/62 (77%), Gaps = 3/62 (4%)
Query: 23 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPD 81
HINLKV DG+ E+FF+IK++T L++LM A+ RQ E++S+ FL+DG R++ +QTP+
Sbjct: 8 THINLKV--SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPE 65
Query: 82 EV 83
++
Sbjct: 66 DL 67
>pdb|2K8H|A Chain A, Solution Structure Of Sumo From Trypanosoma Brucei
Length = 110
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 20 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQT 79
+++A + +KV DG E+FFRIK T LKKL++ YC +Q + NS+ FLFDG + +T
Sbjct: 22 EETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKT 81
Query: 80 PDEV 83
P+E+
Sbjct: 82 PEEL 85
>pdb|1U4A|A Chain A, Solution Structure Of Human Sumo-3 C47s
Length = 87
Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 38/57 (66%)
Query: 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTP 80
HINLKV GQDG+ V F+IKR T L KLM AY +RQ + + I F FDG+ + TP
Sbjct: 3 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYSERQGLSMRQIRFRFDGQPINETDTP 59
>pdb|3V62|A Chain A, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
pdb|3V62|D Chain D, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
Length = 84
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 3/62 (4%)
Query: 23 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPD 81
HINL V DG+ E+FF I +T L++LM A+ RQ E++S+ FL+DG R++ +QTP+
Sbjct: 8 THINLXVS--DGSSEIFFXIXXTTPLRRLMEAFAXRQGXEMDSLRFLYDGIRIQADQTPE 65
Query: 82 EV 83
++
Sbjct: 66 DL 67
>pdb|2JXX|A Chain A, Nmr Solution Structure Of Ubiquitin-Like Domain Of
Nfatc2ip. Northeast Structural Genomics Consortium
Target Hr5627
Length = 97
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 19 VDQSAHINLKVKGQDGNEVF-FRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE 77
+ S + L+V+G++ ++ + R + LK LM+ Y + + ++F FDG +L G
Sbjct: 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGR 79
Query: 78 QTPDEV 83
+ P ++
Sbjct: 80 ELPADL 85
>pdb|3RD2|A Chain A, Nip45 Sumo-Like Domain 2
Length = 82
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 22 SAHINLKVKGQDGNEVF-FRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTP 80
S + L+V+G++ ++ + R + LK LM+ Y + + ++F FDG +L G + P
Sbjct: 8 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELP 67
Query: 81 DEV 83
++
Sbjct: 68 ADL 70
>pdb|3A4R|A Chain A, The Crystal Structure Of Sumo-Like Domain 2 In Nip45
pdb|3A4R|B Chain B, The Crystal Structure Of Sumo-Like Domain 2 In Nip45
pdb|3A4S|C Chain C, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|D Chain D, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 79
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 22 SAHINLKVKGQDGNEVF-FRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTP 80
S + L+V+G++ +++ + + LK LM+ Y + + + ++F FDG +L G++ P
Sbjct: 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELP 64
Query: 81 DEVIL 85
++ L
Sbjct: 65 ADLGL 69
>pdb|1E9C|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And
Appnp
pdb|1E9D|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Aztmp And Adp
pdb|1E9E|A Chain A, Mutant Human Thymidylate Kinase (F105y) Complexed With
Dtmp And Adp
Length = 215
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 42 KRSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
+RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 47 ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 84
>pdb|1E2D|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A
Magnesium-Ion
pdb|1E2E|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate,A Magnesium-Ion
And Alf3
pdb|1E2F|A Chain A, Human Thymidylate Kinase Complexed With Thymidine
Monophosphate, Adenosine Diphosphate And A
Magnesium-Ion
pdb|1E2G|A Chain A, Human Thymidylate Kinase Complexed With Adp, Tdp And A
Magnesium-Ion
pdb|1E2Q|A Chain A, Human Thymidylate Kinase Complexed With Tp5a And A
Magnesium-Ion
pdb|1E99|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Adp
pdb|1E9A|A Chain A, Human Thymidylate Kinase Complexed With The Bisubstrate
Inhibitor Aztp5a
pdb|1E9B|A Chain A, Human Thymidylate Kinase Complexed With Aztmp And Appnp
pdb|1NMX|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Adp
pdb|1NMZ|A Chain A, Crystal Structure Of Human Thymidylate Kinase With
Nh2tmp And Appnhp
pdb|1NN0|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Adp
pdb|1NN1|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Ddtmp
And Appnhp
pdb|1NN3|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp
+ Adp
pdb|1NN5|A Chain A, Crystal Structure Of Human Thymidylate Kinase With D4tmp
+ Appnhp
Length = 215
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 42 KRSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
+RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 47 ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 84
>pdb|1NMY|A Chain A, Crystal Structure Of Human Thymidylate Kinase With Fltmp
And Appnhp
Length = 209
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 42 KRSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
+RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 41 ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 78
>pdb|1E9F|A Chain A, Mutant Human Thymidylate Kinase Complexed With Tmp And
Adp
Length = 217
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 42 KRSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
+RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 47 ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 84
>pdb|2XX3|A Chain A, Human Thymidylate Kinase Complexed With Thymidine Butenyl
Phosphonate Monophosphate And Adp
Length = 232
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 42 KRSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
+RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 64 ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 101
>pdb|1E98|A Chain A, Wild Type Human Thymidylate Kinase Complexed With Aztmp
And Adp
Length = 215
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 42 KRSTQLKKLMNAYCDRQS-VELNSIAFLFDGRRLRGEQTP 80
+RST++ KL+++Y ++S VE +S+ LF R EQ P
Sbjct: 47 ERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRW--EQVP 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,619,480
Number of Sequences: 62578
Number of extensions: 82739
Number of successful extensions: 236
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 54
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)