Query 034095
Match_columns 104
No_of_seqs 100 out of 386
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 16:29:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034095.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034095hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l76_A Nfatc2-interacting prot 100.0 8.1E-32 2.8E-36 181.2 10.0 77 17-95 15-91 (95)
2 3kyd_D Small ubiquitin-related 100.0 8.6E-32 2.9E-36 186.3 10.1 93 1-96 20-112 (115)
3 2jxx_A Nfatc2-interacting prot 100.0 3.5E-30 1.2E-34 173.5 9.5 74 21-94 22-96 (97)
4 2d07_B Ubiquitin-like protein 100.0 1.4E-28 4.9E-33 163.1 10.4 81 14-95 8-88 (93)
5 2k8h_A Small ubiquitin protein 100.0 9.4E-29 3.2E-33 169.5 8.4 95 1-96 1-98 (110)
6 1wm3_A Ubiquitin-like protein 100.0 2.2E-28 7.6E-33 154.8 9.1 72 24-95 1-72 (72)
7 3pge_A SUMO-modified prolifera 100.0 2.2E-28 7.4E-33 182.6 10.3 93 1-96 7-100 (200)
8 1wz0_A Ubiquitin-like protein 100.0 2.8E-28 9.5E-33 165.4 9.9 75 21-95 21-95 (104)
9 3tix_A Ubiquitin-like protein 100.0 1.6E-28 5.4E-33 183.5 8.4 84 12-96 44-128 (207)
10 2eke_C Ubiquitin-like protein 100.0 9.9E-28 3.4E-32 163.5 11.3 75 20-95 27-101 (106)
11 2io0_B Small ubiquitin-related 100.0 7.3E-28 2.5E-32 159.7 10.1 75 22-96 3-77 (91)
12 3a4r_A Nfatc2-interacting prot 99.9 6.7E-28 2.3E-32 155.5 9.6 74 21-94 4-78 (79)
13 2io1_B Small ubiquitin-related 99.9 6.3E-27 2.2E-31 155.7 10.0 77 20-96 3-79 (94)
14 3v7o_A Minor nucleoprotein VP3 99.9 1.6E-28 5.6E-33 185.5 0.0 80 15-95 11-91 (227)
15 3uf8_A Ubiquitin-like protein 99.9 1.2E-25 4.2E-30 167.1 9.4 83 15-98 11-94 (209)
16 3ix6_A TS, tsase, thymidylate 99.9 1.5E-25 5.2E-30 179.2 0.0 74 21-95 18-91 (360)
17 4da1_A Protein phosphatase 1K, 99.9 1.7E-25 5.7E-30 177.3 0.0 83 13-96 18-101 (389)
18 3goe_A DNA repair protein RAD6 99.9 6E-23 2E-27 134.1 9.0 73 23-95 8-81 (82)
19 1wyw_B Ubiquitin-like protein 99.7 3.3E-17 1.1E-21 108.0 9.5 92 1-95 1-92 (97)
20 2uyz_B Small ubiquitin-related 99.7 6.9E-16 2.3E-20 96.9 9.3 73 23-95 2-74 (79)
21 3dbh_I NEDD8; cell cycle, acti 99.1 5.9E-10 2E-14 70.4 9.5 75 21-95 9-83 (88)
22 4hcn_B Polyubiquitin, ubiquiti 99.1 3.4E-10 1.2E-14 74.0 8.5 79 17-95 15-93 (98)
23 3n3k_B Ubiquitin; hydrolase, p 99.1 7.8E-10 2.7E-14 69.2 8.4 72 24-95 3-74 (85)
24 3v6c_B Ubiquitin; structural g 99.0 2.7E-09 9.4E-14 68.5 10.2 75 21-95 14-88 (91)
25 3phx_B Ubiquitin-like protein 99.0 3.5E-09 1.2E-13 65.9 10.2 73 23-95 3-75 (79)
26 3mtn_B UBA80, ubcep1, ubiquiti 99.0 2.3E-09 7.9E-14 66.9 9.3 72 24-95 3-74 (85)
27 1ndd_A NEDD8, protein (ubiquit 99.0 2.6E-09 8.9E-14 65.1 9.2 70 26-95 2-71 (76)
28 3a9j_A Ubiquitin; protein comp 99.0 2.9E-09 1E-13 64.9 9.2 70 26-95 2-71 (76)
29 1wh3_A 59 kDa 2'-5'-oligoadeny 99.0 2.7E-09 9.4E-14 67.4 9.1 74 22-95 5-78 (87)
30 1ttn_A DC-UBP, dendritic cell- 99.0 1.8E-09 6E-14 71.7 8.1 76 21-96 20-95 (106)
31 3vdz_A Ubiquitin-40S ribosomal 99.0 9E-09 3.1E-13 68.9 10.5 74 22-95 33-106 (111)
32 3k9o_B Ubiquitin, UBB+1; E2-25 99.0 5.5E-09 1.9E-13 67.2 9.2 71 25-95 2-72 (96)
33 2dzi_A Ubiquitin-like protein 99.0 7.5E-09 2.6E-13 64.1 9.4 74 22-95 5-78 (81)
34 1j8c_A Ubiquitin-like protein 98.9 3.2E-08 1.1E-12 67.9 13.1 73 22-95 30-102 (125)
35 2bwf_A Ubiquitin-like protein 98.9 1.4E-08 4.9E-13 62.3 9.4 70 25-95 5-74 (77)
36 4dwf_A HLA-B-associated transc 98.9 2.2E-08 7.7E-13 63.7 10.6 74 22-96 3-76 (90)
37 1yx5_B Ubiquitin; proteasome, 98.9 1.2E-08 4.1E-13 66.2 9.3 70 26-95 2-71 (98)
38 2ojr_A Ubiquitin; lanthide-bin 98.9 1.8E-08 6E-13 67.3 9.8 74 22-95 33-106 (111)
39 2hj8_A Interferon-induced 17 k 98.9 9.8E-09 3.3E-13 65.7 7.7 72 24-95 4-75 (88)
40 1sif_A Ubiquitin; hydrophobic 98.8 2E-08 6.7E-13 64.4 8.4 72 24-95 9-80 (88)
41 2faz_A Ubiquitin-like containi 98.8 3.9E-08 1.3E-12 60.8 9.5 72 24-95 2-75 (78)
42 1wx7_A Ubiquilin 3; ubiquitin- 98.8 6.6E-08 2.2E-12 63.8 10.7 74 21-95 14-87 (106)
43 1wx8_A Riken cDNA 4931431F19; 98.8 1.8E-08 6.2E-13 65.1 7.6 73 22-95 15-87 (96)
44 1wy8_A NP95-like ring finger p 98.8 8E-08 2.7E-12 60.9 9.6 74 22-95 5-80 (89)
45 4fbj_B NEDD8; effector-HOST ta 98.8 4.2E-08 1.4E-12 62.8 8.3 70 26-95 2-71 (88)
46 2klc_A Ubiquilin-1; ubiquitin- 98.8 1.1E-07 3.6E-12 62.7 10.5 74 22-96 23-96 (101)
47 2wyq_A HHR23A, UV excision rep 98.8 1.5E-07 5.2E-12 58.8 10.4 75 23-97 4-81 (85)
48 2l7r_A Ubiquitin-like protein 98.7 3.5E-08 1.2E-12 64.0 7.3 71 23-95 18-88 (93)
49 1yqb_A Ubiquilin 3; structural 98.7 9E-08 3.1E-12 63.0 9.3 74 21-95 19-92 (100)
50 3b08_A Polyubiquitin-C, ubiqui 98.7 1.5E-07 5E-12 64.1 10.3 72 24-95 76-147 (152)
51 4eew_A Large proline-rich prot 98.7 2E-07 6.7E-12 59.0 10.2 72 22-94 15-86 (88)
52 3plu_A Ubiquitin-like modifier 98.7 1.9E-07 6.6E-12 62.0 10.2 74 22-95 19-92 (93)
53 1uh6_A Ubiquitin-like 5; beta- 98.7 2.5E-07 8.6E-12 62.0 10.7 84 13-96 17-100 (100)
54 3u30_A Ubiquitin, linear DI-ub 98.7 1.4E-07 4.7E-12 66.6 9.8 78 18-95 14-91 (172)
55 1uel_A HHR23B, UV excision rep 98.7 2E-07 6.9E-12 60.4 9.7 73 26-98 2-77 (95)
56 3m62_B UV excision repair prot 98.6 1.1E-07 3.8E-12 63.1 7.3 73 25-97 2-74 (106)
57 1wia_A Hypothetical ubiquitin- 98.6 2.7E-07 9.1E-12 59.5 7.8 72 22-96 5-77 (95)
58 3rt3_B Ubiquitin-like protein 98.6 8.2E-07 2.8E-11 61.6 10.4 74 22-95 79-152 (159)
59 3b1l_X E3 ubiquitin-protein li 98.0 8.4E-09 2.9E-13 63.5 0.0 70 26-95 2-71 (76)
60 3m63_B Ubiquitin domain-contai 98.5 6.3E-08 2.2E-12 64.0 4.2 75 21-96 25-99 (101)
61 2daf_A FLJ35834 protein; hypot 98.5 1.2E-06 4.2E-11 60.5 10.8 76 23-98 14-90 (118)
62 3b08_A Polyubiquitin-C, ubiqui 98.5 6.2E-07 2.1E-11 60.9 9.1 70 26-95 2-71 (152)
63 2kdi_A Ubiquitin, vacuolar pro 98.5 9.9E-07 3.4E-11 59.3 9.3 71 25-95 10-80 (114)
64 2kk8_A Uncharacterized protein 98.5 1E-06 3.5E-11 56.2 8.9 73 23-95 9-82 (84)
65 2kan_A Uncharacterized protein 98.4 2.1E-06 7.1E-11 55.8 9.5 73 22-95 13-86 (94)
66 3l0w_B Monoubiquitinated proli 98.4 1.5E-06 5.2E-11 62.1 9.1 70 26-95 2-71 (169)
67 1we7_A SF3A1 protein; structur 98.4 2E-06 6.9E-11 57.5 8.6 74 22-95 23-106 (115)
68 3q3f_A Ribonuclease/ubiquitin 98.4 2E-06 6.7E-11 63.1 8.8 72 24-95 105-176 (189)
69 4a20_A Ubiquitin-like protein 98.4 3.7E-06 1.3E-10 55.6 9.3 74 22-95 17-94 (98)
70 3u5e_m 60S ribosomal protein L 98.3 6.6E-08 2.3E-12 66.0 0.0 70 26-95 2-71 (128)
71 1we6_A Splicing factor, putati 98.3 2.2E-06 7.5E-11 56.9 7.5 74 22-95 25-102 (111)
72 1x1m_A Ubiquitin-like protein 98.2 4.3E-06 1.5E-10 55.3 7.5 74 24-97 12-100 (107)
73 1wgd_A Homocysteine-responsive 98.2 6.3E-06 2.1E-10 52.8 8.0 73 23-95 6-84 (93)
74 2kd0_A LRR repeats and ubiquit 98.2 9.3E-06 3.2E-10 51.6 8.2 64 32-95 19-82 (85)
75 3u5c_f 40S ribosomal protein S 98.2 2.1E-07 7.3E-12 66.1 0.0 70 26-95 2-71 (152)
76 1v86_A DNA segment, CHR 7, way 98.2 5.4E-06 1.8E-10 53.8 6.7 77 18-96 11-87 (95)
77 1wju_A NEDD8 ultimate buster-1 98.2 1.3E-05 4.6E-10 53.5 8.5 72 24-95 15-90 (100)
78 1v5o_A 1700011N24RIK protein; 98.1 1.4E-05 4.9E-10 52.2 8.4 73 23-95 6-83 (102)
79 1wxv_A BAG-family molecular ch 98.1 3.3E-05 1.1E-09 49.2 9.0 72 23-95 6-83 (92)
80 2lxa_A Ubiquitin-like protein 98.1 1E-05 3.5E-10 52.3 6.4 77 25-102 2-82 (87)
81 3u30_A Ubiquitin, linear DI-ub 98.1 2.6E-05 8.9E-10 54.8 9.0 72 24-95 96-167 (172)
82 3rt3_B Ubiquitin-like protein 98.1 2.9E-05 9.9E-10 53.6 8.8 72 25-96 3-76 (159)
83 1wgg_A Ubiquitin carboxyl-term 98.0 3.5E-05 1.2E-09 50.2 7.8 73 22-96 5-78 (96)
84 1v5t_A 8430435I17RIK protein; 98.0 2.3E-05 8E-10 50.1 6.5 73 23-96 6-82 (90)
85 1wgh_A Ubiquitin-like 3, HCG-1 97.9 0.00015 5E-09 49.4 10.5 78 22-99 14-100 (116)
86 1v2y_A 3300001G02RIK protein; 97.9 3.1E-05 1.1E-09 52.0 6.7 74 22-95 5-94 (105)
87 2gow_A HCG-1 protein, ubiquiti 97.9 6.1E-05 2.1E-09 51.9 8.0 70 22-91 15-92 (125)
88 3ai5_A Yeast enhanced green fl 97.9 8.8E-05 3E-09 58.0 9.6 74 22-95 231-304 (307)
89 1oqy_A HHR23A, UV excision rep 97.8 2.8E-05 9.5E-10 62.0 6.5 78 23-100 6-86 (368)
90 2kdb_A Homocysteine-responsive 97.8 6.3E-05 2.1E-09 49.6 6.9 72 22-93 21-98 (99)
91 4dbg_A Ranbp-type and C3HC4-ty 97.8 0.00021 7.3E-09 48.0 9.5 72 24-95 24-98 (105)
92 1wf9_A NPL4 family protein; be 97.8 3.5E-05 1.2E-09 51.0 5.5 73 23-96 6-94 (107)
93 1se9_A Ubiquitin family; ubiqu 97.8 0.00015 5.1E-09 50.2 8.6 68 23-90 15-90 (126)
94 2kjr_A CG11242; UBL, ubiquitin 97.8 0.00025 8.5E-09 46.3 8.9 72 22-93 13-92 (95)
95 2kzr_A Ubiquitin thioesterase 97.6 5.7E-05 2E-09 47.8 3.8 70 26-96 2-77 (86)
96 1v6e_A Cytoskeleton-associated 97.5 0.00048 1.6E-08 44.3 7.4 73 23-95 6-86 (95)
97 2kj6_A Tubulin folding cofacto 97.5 0.00047 1.6E-08 45.3 7.3 74 21-94 11-93 (97)
98 1t0y_A Tubulin folding cofacto 97.5 0.00096 3.3E-08 44.9 8.9 74 23-96 5-86 (122)
99 2dzj_A Synaptic glycoprotein S 97.5 0.00025 8.4E-09 45.6 5.4 71 24-94 10-86 (88)
100 2fnj_B Transcription elongatio 97.4 0.001 3.5E-08 45.5 8.5 70 25-95 3-79 (118)
101 4ajy_B Transcription elongatio 97.3 0.002 7E-08 44.1 9.2 70 25-95 3-79 (118)
102 1wjn_A Tubulin-folding protein 97.3 0.0019 6.5E-08 41.5 8.3 76 22-97 7-93 (97)
103 2al3_A TUG long isoform; TUG U 97.0 0.0024 8.3E-08 42.0 6.8 69 25-93 10-78 (90)
104 2pjh_A Protein NPL4, nuclear p 96.5 0.0011 3.7E-08 42.0 2.0 68 25-93 5-77 (80)
105 4b6w_A Tubulin-specific chaper 96.5 0.013 4.3E-07 37.3 7.1 70 25-94 3-81 (86)
106 3shq_A UBLCP1; phosphatase, hy 96.4 0.0074 2.5E-07 46.9 6.3 74 22-97 3-79 (320)
107 2xzm_9 RPS31E; ribosome, trans 96.3 0.00063 2.2E-08 50.0 0.0 65 26-95 2-66 (189)
108 2bps_A YUKD protein; ubiquitin 96.0 0.02 6.7E-07 36.7 5.9 72 23-94 3-81 (81)
109 2dzm_A FAS-associated factor 1 94.9 0.11 3.8E-06 34.0 6.9 74 24-99 9-84 (100)
110 3qx1_A FAS-associated factor 1 94.7 0.34 1.2E-05 30.1 8.5 71 22-93 5-80 (84)
111 2cr5_A Reproduction 8; UBX dom 94.4 0.64 2.2E-05 30.4 10.2 72 22-94 21-96 (109)
112 2kvr_A Ubiquitin carboxyl-term 93.1 0.089 3E-06 36.1 3.7 37 37-73 58-94 (130)
113 1ryj_A Unknown; beta/alpha pro 93.1 0.69 2.3E-05 27.8 7.4 60 25-94 5-64 (70)
114 4efo_A Serine/threonine-protei 92.5 0.82 2.8E-05 29.8 7.6 51 25-75 13-64 (94)
115 2daj_A KIAA0977 protein, COBL- 92.5 0.49 1.7E-05 30.9 6.3 65 22-87 8-76 (91)
116 3jyu_A Ubiquitin carboxyl-term 92.2 0.64 2.2E-05 34.2 7.6 71 24-94 139-218 (231)
117 2dzk_A UBX domain-containing p 92.2 1.5 5E-05 28.7 8.7 73 22-94 11-88 (109)
118 1wj4_A KIAA0794 protein; UBX d 92.1 1.5 5.3E-05 29.4 8.9 71 22-93 41-116 (124)
119 1oey_A P67-PHOX, neutrophil cy 91.8 0.54 1.8E-05 30.1 5.9 46 23-70 4-49 (83)
120 3rpf_C Molybdopterin convertin 91.5 0.67 2.3E-05 27.9 5.9 51 39-94 16-68 (74)
121 1j0g_A Hypothetical protein 18 90.9 1.5 5E-05 28.5 7.3 80 22-102 8-91 (92)
122 2ylm_A Ubiquitin carboxyl-term 88.7 0.78 2.7E-05 37.7 5.8 70 24-93 132-214 (530)
123 4a3p_A Ubiquitin carboxyl-term 88.1 1.2 4.1E-05 32.3 6.0 60 35-94 140-206 (217)
124 2ylm_A Ubiquitin carboxyl-term 86.7 0.79 2.7E-05 37.6 4.7 37 37-73 38-74 (530)
125 1f0z_A THis protein; ubiquitin 84.4 2.3 8E-05 24.9 4.9 55 33-94 6-60 (66)
126 1tyg_B YJBS; alpha beta barrel 84.1 1.7 5.7E-05 27.7 4.4 62 23-94 19-81 (87)
127 3po0_A Small archaeal modifier 83.6 5.6 0.00019 24.3 6.7 55 35-94 18-83 (89)
128 1s3s_G P47 protein; AAA ATPase 82.3 7.7 0.00026 25.9 7.4 70 23-92 51-124 (127)
129 2l32_A Small archaeal modifier 80.6 4.2 0.00014 24.8 5.2 59 24-94 2-60 (74)
130 2q5w_D Molybdopterin convertin 77.7 4 0.00014 24.2 4.3 53 36-94 17-71 (77)
131 2k5p_A THis protein, thiamine- 74.3 3.3 0.00011 25.5 3.4 56 33-95 6-64 (78)
132 1vjk_A Molybdopterin convertin 74.2 13 0.00045 23.2 6.8 55 35-94 27-92 (98)
133 1fm0_D Molybdopterin convertin 73.9 5.5 0.00019 23.7 4.3 53 36-94 18-75 (81)
134 1y8x_B Ubiquitin-activating en 73.7 2.7 9.1E-05 27.5 2.9 57 37-93 7-81 (98)
135 3qij_A Protein 4.1; cytoskelet 73.7 4.8 0.00016 30.1 4.8 48 22-69 15-63 (296)
136 2cu3_A Unknown function protei 73.3 6.9 0.00024 22.7 4.5 54 33-94 5-58 (64)
137 3ivf_A Talin-1; FERM domain, c 71.5 9.2 0.00031 29.2 6.0 47 23-69 84-131 (371)
138 1vd2_A Protein kinase C, IOTA 71.4 17 0.00058 23.2 7.6 47 22-69 4-51 (89)
139 1h4r_A Merlin; FERM, neurofibr 70.2 9.9 0.00034 28.2 5.8 51 22-73 20-73 (314)
140 2hj1_A Hypothetical protein; s 67.2 12 0.00039 24.2 4.9 67 23-94 11-83 (97)
141 2dhz_A RAP guanine nucleotide 67.1 10 0.00034 25.7 4.7 54 22-75 7-69 (120)
142 1ef1_A Moesin; membrane, FERM 66.6 9.8 0.00034 27.8 5.1 44 25-69 2-46 (294)
143 1rws_A Hypothetical protein PF 66.2 4.6 0.00016 24.4 2.7 46 40-94 26-71 (77)
144 2kc2_A Talin-1, F1; FERM, adhe 66.0 13 0.00044 25.3 5.2 38 26-63 13-50 (128)
145 1wgy_A RAP guanine nucleotide 65.1 8 0.00027 25.6 3.9 54 22-75 7-63 (104)
146 2g1e_A Hypothetical protein TA 64.7 20 0.00069 21.5 5.7 55 39-94 19-84 (90)
147 3dwg_C 9.5 kDa culture filtrat 62.0 19 0.00065 22.0 5.1 51 43-94 24-87 (93)
148 2i1j_A Moesin; FERM, coiled-co 59.9 27 0.00093 28.8 7.0 46 23-69 3-49 (575)
149 1gcq_C VAV proto-oncogene; SH3 58.9 2.4 8.3E-05 24.6 0.4 20 77-96 21-40 (70)
150 3au4_A Myosin-X; protein-prote 57.4 42 0.0014 26.9 7.6 48 22-69 214-263 (555)
151 2kl0_A Putative thiamin biosyn 55.0 7.8 0.00027 23.4 2.3 55 33-95 6-60 (73)
152 1q1o_A Cell division control p 54.2 19 0.00066 23.4 4.2 39 23-61 4-49 (98)
153 3u7z_A Putative metal binding 54.0 42 0.0014 21.8 6.9 74 20-95 4-97 (101)
154 3kt9_A Aprataxin; FHA domain, 52.8 32 0.0011 22.3 5.1 53 22-98 42-94 (102)
155 2qjl_A URM1, ubiquitin-related 52.3 40 0.0014 20.9 6.3 56 35-94 20-93 (99)
156 4gdk_A Ubiquitin-like protein 50.4 38 0.0013 21.4 5.1 61 22-82 3-69 (91)
157 2juo_A GA-binding protein alph 49.7 22 0.00075 23.0 3.8 52 37-88 5-56 (89)
158 3w1s_C Ubiquitin-like protein 49.6 47 0.0016 21.1 5.6 59 22-82 6-69 (91)
159 2lj0_A Sorbin and SH3 domain-c 49.2 8.7 0.0003 22.6 1.8 27 64-94 8-34 (65)
160 2r2q_A Gamma-aminobutyric acid 49.0 36 0.0012 22.1 5.0 62 22-83 25-93 (110)
161 2fpe_A C-JUN-amino-terminal ki 49.0 9 0.00031 21.5 1.8 18 77-94 14-31 (62)
162 2k9i_A Plasmid PRN1, complete 48.1 11 0.00038 20.6 2.0 29 36-64 9-37 (55)
163 3rui_B Autophagy-related prote 48.0 48 0.0016 22.0 5.5 51 22-72 28-85 (118)
164 2ebp_A SAM and SH3 domain-cont 47.9 9.8 0.00033 22.4 1.9 18 78-95 23-40 (73)
165 2j05_A RAS GTPase-activating p 47.4 11 0.00037 21.4 2.0 18 78-95 18-35 (65)
166 3pvl_A Myosin VIIA isoform 1; 47.1 37 0.0013 28.4 5.9 48 22-69 261-309 (655)
167 1wz3_A Autophagy 12B, ATG12B, 46.9 32 0.0011 22.0 4.4 60 22-83 11-75 (96)
168 2zjd_A Microtubule-associated 46.7 64 0.0022 21.7 6.4 62 22-83 33-103 (130)
169 2a28_A BZZ1 protein; SH3 domai 46.4 11 0.00037 20.5 1.8 19 77-95 11-29 (54)
170 1zuy_A Myosin-5 isoform; SH3 d 46.2 13 0.00044 20.4 2.1 19 77-95 12-30 (58)
171 2npt_A Dual specificity mitoge 45.6 62 0.0021 21.3 6.7 59 21-94 11-71 (106)
172 3hvz_A Uncharacterized protein 44.9 51 0.0017 20.1 6.1 62 26-97 7-69 (78)
173 2bkf_A Zinc-finger protein NBR 44.7 59 0.002 20.8 6.1 50 23-75 5-59 (87)
174 3h9d_A ATG8, microtubule-assoc 43.6 59 0.002 21.6 5.4 61 22-82 29-96 (119)
175 1tuc_A Alpha-spectrin; capping 42.9 13 0.00045 21.1 1.8 17 79-95 2-18 (63)
176 2v1q_A SLA1, cytoskeleton asse 42.5 13 0.00046 20.4 1.8 19 77-95 13-31 (60)
177 3thk_A Spectrin alpha chain, b 41.5 21 0.00072 20.5 2.6 29 63-95 6-34 (73)
178 1jo8_A ABP1P, actin binding pr 41.2 15 0.0005 20.3 1.8 18 78-95 12-29 (58)
179 1g2b_A Spectrin alpha chain; c 41.2 14 0.00048 20.8 1.8 19 77-95 32-50 (62)
180 2fei_A CD2-associated protein; 40.8 14 0.00047 21.4 1.7 19 77-95 12-30 (65)
181 1zx6_A YPR154WP; SH3 domain, p 40.6 15 0.00052 20.2 1.8 19 77-95 13-31 (58)
182 2bz8_A SH3-domain kinase bindi 40.6 15 0.00052 20.2 1.8 18 78-95 13-30 (58)
183 2dmo_A Neutrophil cytosol fact 40.6 15 0.00051 21.1 1.9 19 77-95 18-36 (68)
184 2lx7_A GAS-7, growth arrest-sp 40.5 14 0.00049 21.4 1.7 17 78-94 15-32 (60)
185 1tg0_A BBC1 protein, myosin ta 40.5 15 0.00051 21.0 1.8 18 77-94 18-35 (68)
186 1uti_A GRB2-related adaptor pr 40.5 15 0.00052 20.2 1.8 18 78-95 13-30 (58)
187 1yn8_A NBP2, NAP1-binding prot 40.2 15 0.00053 20.1 1.8 18 78-95 13-30 (59)
188 2nwm_A Vinexin; cell adhesion; 39.7 15 0.00053 21.1 1.8 19 77-95 12-30 (65)
189 1y0m_A 1-phosphatidylinositol- 39.3 16 0.00055 20.3 1.8 19 77-95 14-32 (61)
190 1w70_A Neutrophil cytosol fact 39.3 16 0.00054 20.4 1.8 19 77-95 15-33 (60)
191 1x6b_A RHO guanine exchange fa 39.3 17 0.00059 21.5 2.0 18 78-95 29-46 (79)
192 2gnc_A SLIT-ROBO RHO GTPase-ac 38.9 16 0.00055 20.3 1.8 18 78-95 18-35 (60)
193 1zlm_A Osteoclast stimulating 38.9 16 0.00056 20.1 1.8 18 78-95 15-32 (58)
194 2j6f_A CD2-associated protein; 38.8 16 0.00055 20.5 1.8 18 78-95 13-30 (62)
195 2eyx_A V-CRK sarcoma virus CT1 38.6 17 0.0006 20.7 1.9 17 79-95 21-37 (67)
196 2gw6_A TRNA-splicing endonucle 38.5 36 0.0012 22.7 3.8 22 21-42 101-122 (123)
197 2gqi_A RAS GTPase-activating p 38.5 12 0.00041 21.7 1.2 18 78-95 20-37 (71)
198 2jte_A CD2-associated protein; 38.4 17 0.00057 20.4 1.8 19 77-95 17-35 (64)
199 1x2p_A Protein arginine N-meth 38.3 19 0.00064 20.5 2.0 19 77-95 18-36 (68)
200 1zuu_A BZZ1 protein; SH3 domai 38.2 15 0.00051 20.1 1.5 19 77-95 12-30 (58)
201 1wxb_A Epidermal growth factor 38.2 17 0.00057 20.9 1.8 19 77-95 18-36 (68)
202 2xmf_A Myosin 1E SH3; motor pr 38.1 17 0.00058 20.2 1.8 18 78-95 17-34 (60)
203 2kxc_A Brain-specific angiogen 38.0 15 0.00052 20.9 1.6 18 78-95 19-36 (67)
204 2vwf_A Growth factor receptor- 37.8 18 0.00061 19.8 1.8 19 77-95 13-31 (58)
205 1oot_A Hypothetical 40.4 kDa p 37.7 18 0.00061 20.0 1.8 18 78-95 15-32 (60)
206 1k4u_S Phagocyte NADPH oxidase 37.5 18 0.00062 20.2 1.8 18 78-95 17-34 (62)
207 1spk_A RSGI RUH-010, riken cDN 37.5 16 0.00055 21.1 1.7 18 78-95 20-37 (72)
208 3o5z_A Phosphatidylinositol 3- 37.5 17 0.00058 22.3 1.8 28 63-94 12-39 (90)
209 2ydl_A SH3 domain-containing k 37.3 18 0.0006 21.1 1.8 19 77-95 13-31 (69)
210 1sem_A SEM-5; SRC-homology 3 ( 37.3 18 0.00061 19.8 1.8 18 78-95 14-31 (58)
211 1x2k_A OSTF1, osteoclast stimu 37.2 21 0.0007 20.4 2.1 18 78-95 19-36 (68)
212 2ega_A SH3 and PX domain-conta 37.2 16 0.00055 20.9 1.6 19 77-95 19-37 (70)
213 1cka_A C-CRK N-terminal SH3 do 36.9 18 0.00063 19.7 1.8 18 78-95 13-30 (57)
214 2x3w_D Syndapin I, protein kin 36.8 17 0.00057 20.1 1.6 18 78-95 15-32 (60)
215 1ue9_A Intersectin 2; beta bar 36.8 20 0.0007 21.0 2.1 19 77-95 18-36 (80)
216 2g6f_X RHO guanine nucleotide 36.8 18 0.00063 19.9 1.8 18 78-95 16-33 (59)
217 2da9_A SH3-domain kinase bindi 36.8 20 0.00068 20.5 2.0 19 77-95 18-36 (70)
218 2ct3_A Vinexin; SH3 domian, st 36.7 17 0.0006 20.7 1.7 19 77-95 18-36 (70)
219 2drm_A Acanthamoeba myosin IB; 36.7 19 0.00065 19.7 1.8 19 77-95 14-32 (58)
220 2iim_A Proto-oncogene tyrosine 36.5 19 0.00065 20.1 1.8 19 77-95 17-35 (62)
221 2k2m_A EPS8-like protein 1; al 36.5 19 0.00064 20.7 1.8 19 77-95 19-37 (68)
222 2ew3_A SH3-containing GRB2-lik 36.5 19 0.00064 20.9 1.8 19 77-95 14-32 (68)
223 2kmm_A Guanosine-3',5'-BIS(dip 36.4 60 0.002 18.4 5.6 60 27-95 3-62 (73)
224 3i5r_A Phosphatidylinositol 3- 36.3 18 0.00063 21.5 1.8 18 77-94 16-33 (83)
225 1uj0_A Signal transducing adap 36.3 19 0.00066 20.1 1.8 18 78-95 17-34 (62)
226 2bzy_A CRK-like protein, CRKL 36.2 15 0.00052 21.0 1.4 17 79-95 16-32 (67)
227 2ed1_A 130 kDa phosphatidylino 36.1 18 0.00063 21.1 1.8 19 77-95 21-39 (76)
228 2ecz_A Sorbin and SH3 domain-c 36.1 18 0.00061 20.7 1.7 18 78-95 19-36 (70)
229 1ruw_A Myosin-3 isoform, MYO3; 36.0 22 0.00076 20.2 2.1 19 77-95 14-32 (69)
230 2dbk_A CRK-like protein; struc 35.9 19 0.00065 21.8 1.9 18 78-95 30-47 (88)
231 2fpf_A C-JUN-amino-terminal ki 35.7 19 0.00065 20.7 1.8 17 78-94 18-34 (71)
232 1w1f_A Tyrosine-protein kinase 35.5 20 0.00067 20.1 1.8 19 77-95 18-36 (65)
233 2djq_A SH3 domain containing r 35.5 23 0.00077 20.1 2.1 17 78-94 19-35 (68)
234 1wxt_A Hypothetical protein FL 35.4 20 0.00068 20.5 1.8 19 77-95 18-36 (68)
235 2dl4_A Protein STAC; SH3 domai 35.2 22 0.00077 20.3 2.0 18 78-95 19-36 (68)
236 2dl3_A Sorbin and SH3 domain-c 35.1 20 0.00068 20.4 1.8 19 77-95 18-36 (68)
237 2ct4_A CDC42-interacting prote 34.9 20 0.00068 20.5 1.8 19 77-95 18-36 (70)
238 3m95_A Autophagy related prote 34.9 72 0.0025 21.4 4.8 60 22-81 34-100 (125)
239 2dil_A Proline-serine-threonin 34.8 20 0.00067 20.5 1.7 18 78-95 20-37 (69)
240 4e6r_A Cytoplasmic protein NCK 34.7 21 0.00073 19.3 1.8 18 77-94 12-29 (58)
241 2jt4_A Cytoskeleton assembly c 34.6 20 0.00069 20.4 1.8 19 77-95 17-35 (71)
242 2oaw_A Spectrin alpha chain, b 34.4 21 0.00071 19.9 1.8 18 78-95 13-30 (65)
243 2dnu_A RUH-061, SH3 multiple d 34.4 19 0.00064 20.6 1.6 19 77-95 19-37 (71)
244 2i0n_A Class VII unconventiona 34.3 20 0.00067 21.3 1.7 18 78-95 22-39 (80)
245 2o9s_A Ponsin; SH3 domain, sig 34.3 21 0.00071 20.2 1.8 19 77-95 17-35 (67)
246 2e5k_A Suppressor of T-cell re 34.3 18 0.00062 22.1 1.6 20 77-96 27-46 (94)
247 1x43_A Endophilin B1, SH3 doma 34.2 23 0.00079 20.9 2.0 18 78-95 29-46 (81)
248 2cuc_A SH3 domain containing r 34.2 21 0.00073 20.3 1.8 19 77-95 18-36 (70)
249 2ekh_A SH3 and PX domain-conta 34.2 20 0.00067 21.3 1.7 19 77-95 19-37 (80)
250 1wi7_A SH3-domain kinase bindi 34.1 15 0.00053 20.9 1.2 17 78-94 19-35 (68)
251 1wyx_A CRK-associated substrat 34.0 21 0.00072 20.3 1.8 19 77-95 14-32 (69)
252 1i07_A Epidermal growth factor 34.0 20 0.00067 19.9 1.6 19 77-95 12-30 (60)
253 2ak5_A RHO guanine nucleotide 34.0 22 0.00075 19.9 1.8 18 78-95 18-35 (64)
254 2ke9_A Caskin-2; SH3 domain, A 33.8 21 0.00073 21.6 1.9 18 77-94 30-47 (83)
255 1nm7_A Peroxisomal membrane pr 33.4 22 0.00074 21.0 1.8 19 77-95 18-37 (69)
256 2jmc_A Spectrin alpha chain, b 33.3 23 0.00078 20.9 1.9 19 77-95 2-20 (77)
257 1uhf_A Intersectin 2; beta bar 33.1 20 0.00069 20.6 1.6 18 77-94 19-36 (69)
258 3c0c_A Endophilin-A2; endocyto 33.1 22 0.00075 20.6 1.8 19 77-95 24-42 (73)
259 1gbq_A GRB2; complex (signal t 32.9 18 0.00062 21.1 1.4 18 78-95 21-38 (74)
260 2l52_A Methanosarcina acetivor 32.9 88 0.003 19.3 5.8 50 44-94 27-93 (99)
261 1eo6_A GATE-16, golgi-associat 32.9 94 0.0032 20.3 5.1 62 22-83 26-94 (117)
262 2b86_A Cytoplasmic protein NCK 32.8 25 0.00087 20.4 2.0 19 77-95 15-33 (67)
263 2k9g_A SH3 domain-containing k 32.8 22 0.00077 20.5 1.8 18 78-95 21-38 (73)
264 1u5s_A Cytoplasmic protein NCK 32.7 23 0.00079 20.2 1.8 19 77-95 17-35 (71)
265 2dl7_A KIAA0769 protein; SH3 d 32.6 23 0.00077 20.5 1.8 19 77-95 19-37 (73)
266 2yuo_A CIP85, RUN and TBC1 dom 32.6 23 0.00077 20.8 1.8 18 78-95 19-36 (78)
267 2dnf_A Doublecortin domain-con 32.6 38 0.0013 21.9 3.0 54 37-96 30-87 (108)
268 2dm1_A Protein VAV-2; RHO fami 32.4 19 0.00066 20.9 1.4 19 77-95 18-36 (73)
269 2dl8_A SLIT-ROBO RHO GTPase-ac 32.4 23 0.00079 20.4 1.8 18 78-95 21-38 (72)
270 2ed0_A ABL interactor 2; coile 32.3 23 0.00078 20.9 1.8 18 78-95 29-46 (78)
271 2cre_A HEF-like protein; SH3 d 32.3 23 0.00079 20.2 1.8 19 77-95 18-36 (71)
272 1j3t_A Intersectin 2; beta bar 32.2 24 0.00081 20.5 1.8 18 78-95 22-39 (74)
273 1k1z_A VAV; SH3, proto-oncogen 32.2 23 0.00077 20.8 1.7 18 79-96 31-48 (78)
274 3u23_A CD2-associated protein; 32.1 24 0.00082 19.6 1.8 19 77-95 18-36 (65)
275 1wj6_A KIAA0049 protein, RSGI 31.9 1.1E+02 0.0037 20.1 5.6 53 22-77 12-69 (101)
276 1aww_A ATK, AMGX1, BPK, bruton 31.9 22 0.00075 20.1 1.6 19 77-95 19-37 (67)
277 2dlp_A KIAA1783 protein; SH3 d 31.9 21 0.00073 21.4 1.6 18 78-95 20-37 (85)
278 2lcs_A NAP1-binding protein 2; 31.8 24 0.00081 20.7 1.8 19 77-95 16-34 (73)
279 2cub_A Cytoplasmic protein NCK 31.6 27 0.00091 21.1 2.0 19 77-95 28-46 (88)
280 3rnj_A Brain-specific angiogen 31.5 35 0.0012 19.2 2.5 19 78-96 20-38 (67)
281 2pqh_A Spectrin alpha chain, b 31.4 25 0.00085 20.8 1.8 18 78-95 14-31 (80)
282 4a6q_A Histone deacetylase com 31.3 28 0.00097 24.2 2.3 61 35-95 54-137 (143)
283 2jw4_A Cytoplasmic protein NCK 31.1 28 0.00094 20.1 2.0 19 77-95 18-36 (72)
284 2nvu_B Maltose binding protein 30.9 86 0.0029 26.2 5.6 58 36-93 713-788 (805)
285 2yup_A Vinexin; sorbin and SH3 30.8 25 0.00086 21.2 1.8 28 64-95 19-46 (90)
286 1csk_A C-SRC SH3 domain; phosp 30.4 26 0.00089 20.0 1.8 19 77-95 22-40 (71)
287 1m1s_A WR4; structural genomic 30.4 53 0.0018 21.7 3.5 25 22-46 24-48 (116)
288 2inc_C TOUB protein; DIIRON, 4 30.4 88 0.003 19.8 4.4 59 38-96 16-82 (83)
289 1ugv_A KIAA0621, olygophrenin- 30.4 20 0.0007 20.7 1.3 18 78-95 22-39 (72)
290 2eqi_A Phospholipase C, gamma 30.3 21 0.00071 20.4 1.3 18 77-94 18-35 (69)
291 2l0a_A STAM-1, signal transduc 30.2 26 0.0009 20.7 1.8 18 78-95 29-46 (72)
292 2d8j_A FYN-related kinase; SH3 30.1 23 0.00078 20.5 1.5 19 77-95 18-36 (77)
293 1gl5_A Tyrosine-protein kinase 30.0 27 0.00093 19.8 1.8 19 77-95 13-31 (67)
294 3ulr_B SRC substrate cortactin 29.9 28 0.00096 19.4 1.8 19 77-95 20-38 (65)
295 1x69_A Cortactin isoform A; SH 29.8 30 0.001 20.3 2.0 17 78-94 29-45 (79)
296 1x6g_A Megakaryocyte-associate 29.8 27 0.00093 20.8 1.8 19 77-95 28-46 (81)
297 3osv_A Flagellar basal-BODY RO 29.6 81 0.0028 20.7 4.4 40 22-77 36-76 (138)
298 3pvl_A Myosin VIIA isoform 1; 29.6 56 0.0019 27.3 4.3 70 24-96 537-606 (655)
299 1neg_A Spectrin alpha chain, b 29.4 27 0.00092 21.2 1.8 18 78-95 29-46 (83)
300 2dl5_A KIAA0769 protein; SH3 d 29.4 27 0.00094 20.5 1.8 19 77-95 24-42 (78)
301 1b07_A Protein (proto-oncogene 29.2 33 0.0011 19.5 2.1 19 77-95 14-32 (65)
302 4f14_A Nebulette; SH3 domain, 29.2 30 0.001 19.1 1.8 19 77-95 17-35 (64)
303 2dbm_A SH3-containing GRB2-lik 29.2 23 0.00079 20.5 1.4 18 78-95 19-36 (73)
304 2kxd_A 11-MER peptide, SH3 dom 29.1 27 0.00092 20.2 1.7 17 79-95 12-28 (73)
305 1uhc_A KIAA1010 protein; beta 29.1 29 0.00098 20.4 1.8 18 78-95 25-42 (79)
306 2yun_A Nostrin; nitric oxide s 29.0 28 0.00096 20.4 1.8 17 78-94 19-35 (79)
307 1msp_A MSP, major sperm protei 29.0 67 0.0023 21.0 3.8 25 22-46 26-50 (126)
308 2cud_A SRC-like-adapter; SH3 d 29.0 31 0.0011 20.4 2.0 19 77-95 28-46 (79)
309 1wx6_A Cytoplasmic protein NCK 28.9 32 0.0011 20.7 2.0 19 77-95 28-46 (91)
310 3gqs_A Adenylate cyclase-like 28.8 32 0.0011 21.5 2.1 20 69-93 73-92 (106)
311 1uff_A Intersectin 2; beta bar 28.8 25 0.00087 21.4 1.6 18 78-95 17-34 (93)
312 2cpg_A REPA protein, transcrip 28.8 25 0.00085 18.4 1.4 26 38-63 4-29 (45)
313 3cqt_A P59-FYN, proto-oncogene 28.8 29 0.001 20.6 1.8 18 78-95 17-34 (79)
314 1iz6_A Initiation factor 5A; S 28.7 1.3E+02 0.0045 20.1 6.1 72 16-95 33-123 (138)
315 1x2q_A Signal transducing adap 28.7 32 0.0011 20.7 2.0 18 78-95 29-46 (88)
316 3qwy_A Cell death abnormality 28.6 1.7E+02 0.006 21.4 7.5 68 24-95 77-176 (308)
317 4esr_A Jouberin; AHI-1, AHI1, 28.5 30 0.001 19.6 1.8 18 77-94 17-34 (69)
318 1s1n_A Nephrocystin 1; beta ba 28.4 26 0.00088 19.8 1.5 19 77-95 21-39 (68)
319 2jqj_A DNA damage response pro 28.3 30 0.001 23.1 2.0 20 70-93 92-111 (151)
320 2rf0_A Mitogen-activated prote 28.3 29 0.00098 21.4 1.8 18 78-95 41-58 (89)
321 2kel_A SVTR protein, uncharact 28.2 36 0.0012 19.6 2.1 32 33-64 10-41 (56)
322 1z9q_A Neutrophil cytosol fact 27.9 21 0.00072 21.6 1.1 19 77-95 29-47 (79)
323 3h0h_A Proto-oncogene tyrosine 27.9 31 0.0011 19.7 1.8 29 63-95 16-44 (73)
324 1v1c_A Obscurin; muscle, sarco 27.8 36 0.0012 21.0 2.1 17 78-94 19-35 (71)
325 1gri_A Growth factor bound pro 27.7 1.5E+02 0.005 20.2 7.2 67 24-95 94-187 (217)
326 2yuq_A Tyrosine-protein kinase 27.5 34 0.0012 20.4 2.0 19 77-95 30-48 (85)
327 3eg3_A Proto-oncogene tyrosine 27.3 34 0.0011 18.8 1.8 19 77-95 16-34 (63)
328 1wfy_A Regulator of G-protein 27.3 60 0.002 21.4 3.3 49 23-71 15-64 (104)
329 1row_A SSP-19, MSP-domain prot 27.3 45 0.0016 21.5 2.7 23 24-46 18-40 (109)
330 2enm_A Sorting nexin-9; SH3-li 27.3 38 0.0013 19.6 2.1 17 79-95 23-39 (77)
331 2ysq_A RHO guanine nucleotide 27.3 35 0.0012 20.1 2.0 19 77-95 21-39 (81)
332 2oi3_A Tyrosine-protein kinase 27.1 35 0.0012 20.2 2.0 19 77-95 36-54 (86)
333 1z9l_A Vesicle-associated memb 27.0 51 0.0018 21.3 3.0 24 24-47 30-53 (128)
334 2epd_A RHO GTPase-activating p 27.0 24 0.00081 20.7 1.1 18 78-95 22-39 (76)
335 3fcg_A F1 capsule-anchoring pr 26.4 82 0.0028 19.9 3.7 29 15-43 52-80 (90)
336 2oyn_A Hypothetical protein MJ 26.4 29 0.00099 24.1 1.7 15 82-96 119-133 (146)
337 1v8c_A MOAD related protein; r 26.3 1.4E+02 0.0047 20.6 5.2 54 40-95 19-82 (168)
338 2egc_A SH3 and PX domain-conta 26.2 29 0.001 20.2 1.5 16 80-95 23-38 (75)
339 1wmh_B Partitioning defective- 26.2 1.3E+02 0.0043 19.0 5.5 43 27-69 7-52 (86)
340 3ngp_A Spectrin alpha chain, b 26.2 42 0.0014 18.3 2.1 19 77-95 17-35 (62)
341 4gmv_A RAS-associated and plec 26.1 2.1E+02 0.0071 21.5 6.6 41 20-60 27-67 (281)
342 1wie_A RIM binding protein 2; 26.1 41 0.0014 20.7 2.2 15 80-94 37-51 (96)
343 4glm_A Dynamin-binding protein 25.8 36 0.0012 19.2 1.8 19 77-95 24-42 (72)
344 2jxb_A T-cell surface glycopro 25.7 39 0.0013 20.3 2.0 19 77-95 42-60 (86)
345 2vkn_A Protein SSU81; membrane 25.7 32 0.0011 19.6 1.6 16 80-95 21-36 (70)
346 2d8h_A SH3YL1 protein; SH3 dom 25.6 26 0.00088 20.6 1.1 18 78-95 29-46 (80)
347 1m11_3 Coat protein VP3; decay 25.3 1E+02 0.0035 22.5 4.6 49 25-75 70-126 (238)
348 2csi_A RIM-BP2, RIM binding pr 25.1 41 0.0014 19.6 2.0 16 80-95 28-43 (76)
349 1wgr_A Growth factor receptor- 25.1 1.4E+02 0.0048 19.2 5.7 40 22-61 7-46 (100)
350 1bb9_A Amphiphysin 2; transfer 24.5 36 0.0012 22.0 1.8 19 77-95 55-73 (115)
351 3c12_A FLGD, flagellar protein 24.0 1.5E+02 0.0053 19.3 5.2 37 22-74 38-75 (138)
352 3hx1_A SLR1951 protein; P74513 24.0 35 0.0012 22.5 1.7 19 69-93 86-104 (131)
353 1ujy_A RHO guanine nucleotide 23.9 29 0.001 20.1 1.2 17 78-94 22-38 (76)
354 3abf_A 4-oxalocrotonate tautom 23.9 95 0.0033 16.8 3.4 24 47-70 21-44 (64)
355 1awj_A ITK; transferase, regul 23.8 23 0.00078 20.8 0.6 19 77-95 31-49 (77)
356 2eki_A DRG 1, developmentally- 23.7 22 0.00075 23.0 0.6 44 53-96 40-87 (93)
357 3cf6_E RAP guanine nucleotide 23.7 3.2E+02 0.011 22.7 8.1 70 17-86 345-420 (694)
358 2v1r_A Peroxisomal membrane pr 23.6 41 0.0014 19.6 1.8 18 78-95 26-44 (80)
359 4hti_A Receptor-type tyrosine- 23.5 68 0.0023 20.9 3.0 22 22-46 42-63 (99)
360 3p14_A L-rhamnose isomerase; T 23.4 42 0.0014 27.2 2.3 21 43-63 385-405 (424)
361 2m0y_A Dedicator of cytokinesi 23.4 33 0.0011 19.6 1.3 19 77-95 22-40 (74)
362 3po8_A RV0020C protein, putati 23.2 52 0.0018 20.2 2.3 20 68-93 68-87 (100)
363 2ba3_A NIKA; dimer, bacterial 23.2 44 0.0015 18.2 1.7 27 37-63 16-42 (51)
364 1hsq_A Phospholipase C-gamma ( 23.1 28 0.00095 20.0 0.9 19 77-95 17-35 (71)
365 1wic_A Hypothetical protein ri 23.0 64 0.0022 21.9 2.9 24 24-47 38-61 (152)
366 3hwu_A Putative DNA-binding pr 23.0 1.7E+02 0.0059 19.4 5.2 33 33-65 11-43 (147)
367 1d8w_A L-rhamnose isomerase; b 22.9 49 0.0017 26.9 2.6 21 43-63 387-407 (426)
368 1udl_A Intersectin 2, KIAA1256 22.9 42 0.0014 20.6 1.8 18 78-95 46-63 (98)
369 1ri9_A FYN-binding protein; SH 22.8 20 0.00068 23.7 0.2 18 77-94 52-69 (102)
370 4h87_A Kanadaptin; FHA domain 22.7 64 0.0022 21.2 2.8 11 83-93 109-119 (130)
371 2cri_A Vesicle-associated memb 22.6 1E+02 0.0035 20.5 3.9 24 24-47 34-57 (147)
372 2o2o_A SH3-domain kinase-bindi 22.5 35 0.0012 21.1 1.4 17 78-94 30-46 (92)
373 2rqr_A CED-12 homolog, engulfm 22.3 43 0.0015 21.6 1.8 19 77-95 70-88 (119)
374 2ege_A Uncharacterized protein 22.2 47 0.0016 19.3 1.8 16 80-95 28-43 (75)
375 3u52_E Phenol hydroxylase comp 22.1 1.9E+02 0.0063 19.5 6.3 65 35-99 38-112 (119)
376 1gxc_A CHK2, CDS1, serine/thre 21.9 61 0.0021 21.6 2.6 21 70-93 108-128 (149)
377 2al6_A Focal adhesion kinase 1 21.5 98 0.0033 23.6 4.0 44 26-69 9-57 (375)
378 1wxu_A Peroxisomal biogenesis 21.4 35 0.0012 20.7 1.2 19 77-95 28-46 (93)
379 1ffv_A CUTS, iron-sulfur prote 21.2 82 0.0028 21.8 3.2 56 24-82 5-67 (163)
380 1k3e_A CEST; chaperone, secret 21.2 86 0.0029 21.9 3.3 29 44-72 2-36 (156)
381 1z6m_A Conserved hypothetical 21.0 78 0.0027 20.5 3.0 28 55-83 142-169 (175)
382 3idw_A Actin cytoskeleton-regu 20.9 6 0.00021 24.7 -2.5 15 80-94 44-58 (72)
383 3els_A PRE-mRNA leakage protei 20.8 61 0.0021 22.1 2.5 22 69-93 121-142 (158)
384 1i1j_A Melanoma derived growth 20.6 48 0.0016 21.2 1.8 19 77-95 33-51 (108)
385 1ip9_A BEM1 protein; ubiquitin 20.4 1.7E+02 0.0059 18.5 6.6 48 23-72 11-58 (85)
386 1n62_A Carbon monoxide dehydro 20.3 85 0.0029 21.8 3.1 56 24-82 5-67 (166)
No 1
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=99.97 E-value=8.1e-32 Score=181.16 Aligned_cols=77 Identities=19% Similarity=0.291 Sum_probs=72.1
Q ss_pred CCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 17 KPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 17 kp~~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+|. .+.+|+|||++ +|++++|+||++|||+|||++||++.|++++++||+|||.||++++||++|+|||||+|||..
T Consensus 15 ~~~-~~~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 15 LPE-TPRLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCS-CCCCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CCC-CCCeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 443 47789999995 799999999999999999999999999999999999999999999999999999999999963
No 2
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.97 E-value=8.6e-32 Score=186.33 Aligned_cols=93 Identities=35% Similarity=0.558 Sum_probs=72.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCc
Q 034095 1 MSATGGGGGGGQEEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTP 80 (104)
Q Consensus 1 m~~~~~~~~~~~~~~~kp~~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP 80 (104)
||+++ .++++.++.+|+ ++.+|+|+|++++|++++|+|+++|||+|||++||++.|++++++||+|||+||.+++||
T Consensus 20 ~~~~~-~~~~~~~~~~k~--~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP 96 (115)
T 3kyd_D 20 MSDQE-AKPSTEDLGDKK--EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP 96 (115)
T ss_dssp ----------------------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCT
T ss_pred ccccc-ccCccccccCCC--CCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCH
Confidence 56443 333344444444 478999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcCCceeeeeec
Q 034095 81 DEVILLFCAFCSCKYG 96 (104)
Q Consensus 81 ~~L~Medgdii~~~~~ 96 (104)
++|+|||||+|||..-
T Consensus 97 ~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 97 KELGMEEEDVIEVYQE 112 (115)
T ss_dssp TTTTCCTTCEEEEEEC
T ss_pred HHcCCCCCCEEEEEee
Confidence 9999999999999763
No 3
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=99.96 E-value=3.5e-30 Score=173.45 Aligned_cols=74 Identities=23% Similarity=0.456 Sum_probs=71.3
Q ss_pred CCCcEEEEEEccCCC-EEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 21 QSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~-~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
++.+|+|+|++++|+ +++|+||++|||++||++||++.|++++++||+|||+||.+++||++|+|||||+|||.
T Consensus 22 ~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 22 TSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp SCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 468999999999995 89999999999999999999999999999999999999999999999999999999994
No 4
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.96 E-value=1.4e-28 Score=163.14 Aligned_cols=81 Identities=42% Similarity=0.626 Sum_probs=72.4
Q ss_pred CCCCCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeee
Q 034095 14 EDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 14 ~~~kp~~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~ 93 (104)
+.+++. ++.+|+|+|++++|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||
T Consensus 8 ~~~~~~-~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv 86 (93)
T 2d07_B 8 EGVKTE-NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDV 86 (93)
T ss_dssp --------CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred ccCCCC-CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEE
Confidence 444443 4689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 034095 94 KY 95 (104)
Q Consensus 94 ~~ 95 (104)
.+
T Consensus 87 ~~ 88 (93)
T 2d07_B 87 FQ 88 (93)
T ss_dssp EE
T ss_pred Ee
Confidence 76
No 5
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.95 E-value=9.4e-29 Score=169.45 Aligned_cols=95 Identities=35% Similarity=0.579 Sum_probs=82.2
Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCC
Q 034095 1 MSATGGGGGGG---QEEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE 77 (104)
Q Consensus 1 m~~~~~~~~~~---~~~~~kp~~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~ 77 (104)
||.++. .++| ...+.++++++.+|+|+|++++|.+++|+|+++|+|++||++||++.|++++++||+|||++|.++
T Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~ 79 (110)
T 2k8h_A 1 MSNNGG-EPSNNGGEGAEGTCKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDET 79 (110)
T ss_dssp CCCCCC-CCCCCCCCCCCCCCCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSS
T ss_pred CCCCCC-CcccCCCccccCCCCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC
Confidence 776642 2223 123344556688999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCcCCceeeeeec
Q 034095 78 QTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~~ 96 (104)
+||++|+|||||+|||.+-
T Consensus 80 ~Tp~dl~mEDgD~Idv~~~ 98 (110)
T 2k8h_A 80 KTPEELGMEDDDVIDAMVE 98 (110)
T ss_dssp SHHHHHHCSSEEEEEEECC
T ss_pred CCHHHcCCCCCCEEEEEEc
Confidence 9999999999999999764
No 6
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.95 E-value=2.2e-28 Score=154.77 Aligned_cols=72 Identities=44% Similarity=0.682 Sum_probs=70.0
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+|+|+|++++|++++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||.+
T Consensus 1 ~i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 1 HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp CEEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999999999999999963
No 7
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-28 Score=182.62 Aligned_cols=93 Identities=34% Similarity=0.607 Sum_probs=72.4
Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCC
Q 034095 1 MSATGGGGGGGQEEDKKPV-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQT 79 (104)
Q Consensus 1 m~~~~~~~~~~~~~~~kp~-~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~T 79 (104)
||+.+-++. ..+++||. +++.+|+|||+ ++|.+++|+|+++|||++||++||++.|++++++||+|||+||.+++|
T Consensus 7 ~~~~~~~~~--~~~~~kp~~~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~T 83 (200)
T 3pge_A 7 MSDSEVNQE--AKPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQT 83 (200)
T ss_dssp --------------------CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCC
T ss_pred cchhhhccc--cccccCCCCCCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCC
Confidence 666544443 24677787 56889999997 499999999999999999999999999999999999999999999999
Q ss_pred ccccCCcCCceeeeeec
Q 034095 80 PDEVILLFCAFCSCKYG 96 (104)
Q Consensus 80 P~~L~Medgdii~~~~~ 96 (104)
|++|+|||||+|||..=
T Consensus 84 P~dL~MEdgD~Idv~~~ 100 (200)
T 3pge_A 84 PEDLDMEDNDIIEAHRE 100 (200)
T ss_dssp TTTTTCCTTEEEEEEEC
T ss_pred HHHcCCCCCCEEEEEec
Confidence 99999999999999753
No 8
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=2.8e-28 Score=165.40 Aligned_cols=75 Identities=43% Similarity=0.660 Sum_probs=72.9
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+.+|+|+|++++|++++|+|+++|+|++||++||++.|++++.+||+|||++|.+++||++|+|||||+|||.+
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~ 95 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 95 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999976
No 9
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-28 Score=183.52 Aligned_cols=84 Identities=35% Similarity=0.651 Sum_probs=71.5
Q ss_pred CCCCCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCce
Q 034095 12 QEEDKKPV-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAF 90 (104)
Q Consensus 12 ~~~~~kp~-~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdi 90 (104)
.++++||+ +++.+|+|||+ ++|++++|+||++|||+|||++||++.|++++++||+|||+||.+++||++|+|||||+
T Consensus 44 ~~~d~KP~~dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDt 122 (207)
T 3tix_A 44 AKPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDI 122 (207)
T ss_dssp -----------CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEE
T ss_pred CCCCCCCCCCCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCE
Confidence 46788888 56889999997 59999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeec
Q 034095 91 CSCKYG 96 (104)
Q Consensus 91 i~~~~~ 96 (104)
|||.+-
T Consensus 123 IDV~le 128 (207)
T 3tix_A 123 IEAHRE 128 (207)
T ss_dssp EEECCC
T ss_pred EEEEEe
Confidence 999863
No 10
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.95 E-value=9.9e-28 Score=163.53 Aligned_cols=75 Identities=37% Similarity=0.696 Sum_probs=72.5
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 20 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 20 ~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+++.+|+|+|++ +|.+++|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||.+
T Consensus 27 ~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~ 101 (106)
T 2eke_C 27 KPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 101 (106)
T ss_dssp CCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEE
T ss_pred CCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEe
Confidence 457899999999 999999999999999999999999999999999999999999999999999999999999976
No 11
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.95 E-value=7.3e-28 Score=159.72 Aligned_cols=75 Identities=43% Similarity=0.653 Sum_probs=72.2
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeec
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
+.+|+|+|++++|+++.|+|+++|+|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||..-
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 77 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 77 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999864
No 12
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.95 E-value=6.7e-28 Score=155.46 Aligned_cols=74 Identities=23% Similarity=0.421 Sum_probs=71.2
Q ss_pred CCCcEEEEEEccCCC-EEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 21 QSAHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~-~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
++.+|+|+|++++|. +++|+|+++++|++||++||++.|++++++||+|||++|.+++||++|+|||||+|||.
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 367899999999996 89999999999999999999999999999999999999999999999999999999994
No 13
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.94 E-value=6.3e-27 Score=155.75 Aligned_cols=77 Identities=42% Similarity=0.633 Sum_probs=72.2
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeec
Q 034095 20 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 20 ~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
+++.+|+|+|++++|++++|+|+++++|++||++||++.|++++.+||+|||++|.+++||++|+|||||+|||..-
T Consensus 3 ~~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~ 79 (94)
T 2io1_B 3 HMNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQ 79 (94)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999773
No 14
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=99.94 E-value=1.6e-28 Score=185.47 Aligned_cols=80 Identities=38% Similarity=0.699 Sum_probs=0.0
Q ss_pred CCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeee
Q 034095 15 DKKPV-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 15 ~~kp~-~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~ 93 (104)
++||+ .++++|+||| +++|++++|+||++|||+|||++||++.|++++++||+|||+||++++||++|+|||||+|||
T Consensus 11 ~~~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV 89 (227)
T 3v7o_A 11 EVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEA 89 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEE
Confidence 34444 2368999999 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 034095 94 KY 95 (104)
Q Consensus 94 ~~ 95 (104)
..
T Consensus 90 ~l 91 (227)
T 3v7o_A 90 HR 91 (227)
T ss_dssp --
T ss_pred Ee
Confidence 75
No 15
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=99.92 E-value=1.2e-25 Score=167.09 Aligned_cols=83 Identities=36% Similarity=0.683 Sum_probs=72.9
Q ss_pred CCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeee
Q 034095 15 DKKPV-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 15 ~~kp~-~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~ 93 (104)
++||+ .++++|+|||++ ++++++|+|+++|||+|||++||+++|++++++||+|||++|++++||++|.|||||+|||
T Consensus 11 ~~~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~ 89 (209)
T 3uf8_A 11 EVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEA 89 (209)
T ss_dssp -------CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEE
T ss_pred cccceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchh
Confidence 34444 347899999998 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccc
Q 034095 94 KYGRL 98 (104)
Q Consensus 94 ~~~~~ 98 (104)
.+-..
T Consensus 90 ~~eq~ 94 (209)
T 3uf8_A 90 HREQI 94 (209)
T ss_dssp ECSCT
T ss_pred hcccc
Confidence 86443
No 16
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=99.90 E-value=1.5e-25 Score=179.24 Aligned_cols=74 Identities=38% Similarity=0.703 Sum_probs=0.0
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
++.+|+|||++ +|++++|+||++|||+|||++||++.|++++++||+|||+||++++||++|+|||||+|||..
T Consensus 18 ~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~ 91 (360)
T 3ix6_A 18 PETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHR 91 (360)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhh
Confidence 36799999998 689999999999999999999999999999999999999999999999999999999999975
No 17
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=99.90 E-value=1.7e-25 Score=177.33 Aligned_cols=83 Identities=35% Similarity=0.661 Sum_probs=0.0
Q ss_pred CCCCCCC-CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCcee
Q 034095 13 EEDKKPV-DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFC 91 (104)
Q Consensus 13 ~~~~kp~-~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii 91 (104)
+++.+|+ +++++|+|||++ ++++++|+||++|||+|||++||+++|++.+++||+|||+||++++||++|+|||||+|
T Consensus 18 ~~~~~~~~~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i 96 (389)
T 4da1_A 18 KPEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDII 96 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEe
Confidence 4555565 356899999998 88899999999999999999999999999999999999999999999999999999999
Q ss_pred eeeec
Q 034095 92 SCKYG 96 (104)
Q Consensus 92 ~~~~~ 96 (104)
||..-
T Consensus 97 ~~~~~ 101 (389)
T 4da1_A 97 EAHRE 101 (389)
T ss_dssp -----
T ss_pred eeeec
Confidence 99753
No 18
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=99.89 E-value=6e-23 Score=134.07 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=69.7
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccc-eEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~-~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
..|++-+++.....+.|+|++++++++||++||.+.|++++ ++||+|||.||.+++||++|+|+|||.|||.+
T Consensus 8 ~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 8 KLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp CEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 46899999888888999999999999999999999999999 99999999999999999999999999999986
No 19
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.72 E-value=3.3e-17 Score=108.00 Aligned_cols=92 Identities=37% Similarity=0.562 Sum_probs=72.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCc
Q 034095 1 MSATGGGGGGGQEEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTP 80 (104)
Q Consensus 1 m~~~~~~~~~~~~~~~kp~~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP 80 (104)
||+++ ..++. ++.++.+++..|+|+|++.+|..+.|.|.+++++..|+++|+++.|++++..||+|+|++|.+++|+
T Consensus 1 ~~~~~-~~~~~--~~~~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl 77 (97)
T 1wyw_B 1 MSDQE-AKPST--EDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTP 77 (97)
T ss_dssp ---------------------CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCH
T ss_pred CCccc-cCccc--cccCCCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCH
Confidence 77653 23322 2222334578899999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcCCceeeeee
Q 034095 81 DEVILLFCAFCSCKY 95 (104)
Q Consensus 81 ~~L~Medgdii~~~~ 95 (104)
++++|++|+.|++.+
T Consensus 78 ~dy~i~~g~~I~l~~ 92 (97)
T 1wyw_B 78 KELGMEEEDVIEVYQ 92 (97)
T ss_dssp HHHTCCTTCEEEEEE
T ss_pred HHCCCCCCCEEEEEE
Confidence 999999999999976
No 20
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.66 E-value=6.9e-16 Score=96.89 Aligned_cols=73 Identities=41% Similarity=0.671 Sum_probs=70.4
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+|+|+|++.+|..+.|+|.+++++..|+++|+++.|++++..||+|+|+++.+++||++++|++||.|++.+
T Consensus 2 ~~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~ 74 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQ 74 (79)
T ss_dssp CEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEE
Confidence 3689999999999999999999999999999999999999999999999999999999999999999999976
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.12 E-value=5.9e-10 Score=70.37 Aligned_cols=75 Identities=13% Similarity=0.292 Sum_probs=70.7
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+...+.|.|+..+|..+.+.|.+++....|.+..+++.|++++..|++|+|..+.++.|..++++++|+.|.+.+
T Consensus 9 ~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 83 (88)
T 3dbh_I 9 SGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 83 (88)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECC
T ss_pred CCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 356789999999999999999999999999999999999999999999999999999999999999999998865
No 22
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.12 E-value=3.4e-10 Score=74.03 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=69.1
Q ss_pred CCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 17 KPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 17 kp~~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|...+..+.|.|+..+|..+.+.|.+++....|.+..+++.+++++..|++|+|+.+.++.|.+++++++|+.|.+.+
T Consensus 15 ~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~ 93 (98)
T 4hcn_B 15 NLYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 93 (98)
T ss_dssp -------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEEC
T ss_pred CCCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3444567889999999999999999999999999999999999999999999999999999999999999999999765
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=7.8e-10 Score=69.25 Aligned_cols=72 Identities=14% Similarity=0.261 Sum_probs=68.0
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.|+..+|..+.+.+.+++....|.+..+++.+++++..|++|+|+.+.++.|.+++++++|+.|.|.+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 74 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLL 74 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 578889988999999999999999999999999999999999999999999999999999999999999876
No 24
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.04 E-value=2.7e-09 Score=68.48 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=70.7
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+...+.|.|+..+|..+.+.|.+++....|.+..+++.|++++..|++|+|..+.++.|..++++.+|+.|.+.+
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 88 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 88 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEEC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEE
Confidence 356899999999999999999999999999999999999999999999999999999999999999999998764
No 25
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.04 E-value=3.5e-09 Score=65.89 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=69.2
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
..+.|.|+..+|..+.+.|.+++....|.+..+++.|++++..|++|+|+.+.++.|.+++++++|+.|.+.+
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~ 75 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 3688999999999999999999999999999999999999999999999999999999999999999998864
No 26
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.03 E-value=2.3e-09 Score=66.92 Aligned_cols=72 Identities=14% Similarity=0.255 Sum_probs=69.0
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.|+..+|..+.+.+.+++....|.+..+++.+++++..|++|+|..+.++.|.+++++.+|+.|.+.+
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 74 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLL 74 (85)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 578999999999999999999999999999999999999999999999999999999999999999999876
No 27
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.03 E-value=2.6e-09 Score=65.13 Aligned_cols=70 Identities=14% Similarity=0.297 Sum_probs=66.3
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|.|+..+|..+.+.+.++++...|.+..+++.|++++..|++|+|+.+.++.|-+++++.+|+.|.+.+
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 5788888899999999999999999999999999999999999999999999999999999999998875
No 28
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.02 E-value=2.9e-09 Score=64.89 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=65.9
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|.|+..+|..+.+.+.++++...|.+..++..|++++..+++|+|+.+.++.|.+++++.+|+.|.+.+
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVL 71 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 5778888898899999999999999999999999999999999999999999999999999999998875
No 29
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.01 E-value=2.7e-09 Score=67.36 Aligned_cols=74 Identities=18% Similarity=0.109 Sum_probs=69.4
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+..+.|.|+..+|..+.+.+.++++...|.+..+++.+++++..|++|+|+.+.++.|.+++++.+|+.|.+.+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSK 78 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEE
Confidence 35789999998898889999999999999999999999999999999999999999999999999999998765
No 30
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.00 E-value=1.8e-09 Score=71.71 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=70.6
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeec
Q 034095 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
....+.|.|+..+|..+.+.|..++....|....+++.|++++..|++|.|+.+.++.|-.++++.+|+.|.|..-
T Consensus 20 ~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~ 95 (106)
T 1ttn_A 20 SGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVS 95 (106)
T ss_dssp -CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECC
T ss_pred CCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEe
Confidence 3567999999988988999999999999999999999999999999999999999999999999999999988753
No 31
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.96 E-value=9e-09 Score=68.94 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=70.2
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
...+.|.|+..+|..+.+.|.+++....|....+++.|++++..|++|.|+.+..+.|..++++.+|+.|.+.+
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEE
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999875
No 32
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.96 E-value=5.5e-09 Score=67.16 Aligned_cols=71 Identities=13% Similarity=0.235 Sum_probs=67.0
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+.|.|+..+|..+.+.|.+++....|.+..+++.|++++..|++|+|..+.++.|.+++++.+|+.|.+.+
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~ 72 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 72 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 46778888899999999999999999999999999999999999999999999999999999999999876
No 33
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=7.5e-09 Score=64.15 Aligned_cols=74 Identities=16% Similarity=0.222 Sum_probs=68.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+..+.|.|+..+|..+.+.+.+++....|.+..+++.|++++..|++|+|+.+.++.|-+++++.+|+.|.+.+
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 78 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVV 78 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEEC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 45688999888898889999999999999999999999999999999999999999999999999999998764
No 34
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.95 E-value=3.2e-08 Score=67.93 Aligned_cols=73 Identities=14% Similarity=0.179 Sum_probs=68.3
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
...++|.|+.. |..+.+.|..++....|.+..+++.|++.+..|++|.|+.|.++.|-.++++.+|+.|.|..
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~ 102 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVI 102 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEE
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEe
Confidence 45799999988 88889999999999999999999999999999999999999999999999999999998765
No 35
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.91 E-value=1.4e-08 Score=62.31 Aligned_cols=70 Identities=10% Similarity=0.183 Sum_probs=65.7
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+.|.|+. +|....+.+.+++....|.+..++..|++++..|++|+|+.+.++.|-+++++.+|+.|.+..
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 74 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVK 74 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEE
Confidence 7788888 888889999999999999999999999999999999999999999999999999999998764
No 36
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.91 E-value=2.2e-08 Score=63.69 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=69.2
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeec
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
+..+.|.|+..+|..+.+.|.+++....|....+++.|++++..|++|.|+.+.++.|-.++++ +|+.|.+.+-
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~ 76 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVER 76 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEEC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEec
Confidence 4578999999999999999999999999999999999999999999999999999999999999 8999987654
No 37
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.90 E-value=1.2e-08 Score=66.22 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=65.8
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|.|+..+|..+.+.+.++++...|.+..+++.|++++..|++|+|+.+.++.|.+++++.+|+.|.+.+
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 71 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 5778888888889999999999999999999999999999999999999999999999999999998765
No 38
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.89 E-value=1.8e-08 Score=67.32 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=69.8
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
...+.|.|+..+|..+.+.+.+++....|.+..+++.|++++..|++|+|+.+.++.|.+++++.+|+.|.+.+
T Consensus 33 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~ 106 (111)
T 2ojr_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 106 (111)
T ss_dssp SSCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 35799999998999999999999999999999999999999999999999999999999999999999998865
No 39
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.86 E-value=9.8e-09 Score=65.71 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=68.0
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.|+..+|..+.+.+.++++...|.+..+++.|++++..|++|+|..+.++.|.+++++.+|+.|.+.+
T Consensus 4 ~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~ 75 (88)
T 2hj8_A 4 PLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 75 (88)
T ss_dssp EEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 578899988899999999999999999999999999999999999999999999999999999999998765
No 40
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.84 E-value=2e-08 Score=64.37 Aligned_cols=72 Identities=14% Similarity=0.216 Sum_probs=66.7
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
-+.|.|...+|..+.+.+.++++...|.+..+++.|++++..|++|+|..+.++.|.+++++.+|+.|.+.+
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 80 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 80 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEE
Confidence 356788888999999999999999999999999999999999999999999999999999999999998764
No 41
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.84 E-value=3.9e-08 Score=60.81 Aligned_cols=72 Identities=14% Similarity=0.180 Sum_probs=66.5
Q ss_pred cEEEEEEccCCCEE-EEE-EeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 24 HINLKVKGQDGNEV-FFR-IKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~g~~v-~Fk-IK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.|+..+|..+ .+. +.++++...|.+..+++.|++++..|++|+|..+.++.|-+++++.+|+.|.+.+
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~ 75 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLV 75 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 46788888888886 888 9999999999999999999999999999999999999999999999999998765
No 42
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.82 E-value=6.6e-08 Score=63.82 Aligned_cols=74 Identities=12% Similarity=0.177 Sum_probs=67.9
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
++..+.|.|+...+. ..+.|..++....|.+..+++.|++.+..|++|+|+.|.++.|-.++++.+|+.|.|.+
T Consensus 14 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (106)
T 1wx7_A 14 DPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 87 (106)
T ss_dssp CSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEE
T ss_pred CCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEE
Confidence 356789999988775 68999999999999999999999999999999999999999999999999999998865
No 43
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.81 E-value=1.8e-08 Score=65.05 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=68.2
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+..|+|.|+.. |..+.+.|.++++...|.+..+++.+++++..|++|.|+.+.++.|.+++++.+|+.|.+.+
T Consensus 15 ~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~ 87 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVV 87 (96)
T ss_dssp SCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCB
T ss_pred CCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEE
Confidence 45789999887 88889999999999999999999999999999999999999999999999999999998764
No 44
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.77 E-value=8e-08 Score=60.86 Aligned_cols=74 Identities=14% Similarity=0.166 Sum_probs=68.4
Q ss_pred CCcEEEEEEccCC-CEEEE-EEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDG-NEVFF-RIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g-~~v~F-kIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
...+.|.|+..+| ..+.+ .+.++++...|.+..+++.|++++..|++|+|+.+.++.|-+++++.+|+.|.+.+
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 80 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLV 80 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEE
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEE
Confidence 4568899998888 68899 59999999999999999999999999999999999999999999999999998765
No 45
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.77 E-value=4.2e-08 Score=62.81 Aligned_cols=70 Identities=14% Similarity=0.297 Sum_probs=65.9
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|.|+..+|..+.+.|.+++....|.+..+++.|++++..|++|+|..+.++.|-+++++++|+.|.+.+
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~ 71 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVL 71 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEEC
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 5777888899999999999999999999999999999999999999999999999999999999998865
No 46
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.77 E-value=1.1e-07 Score=62.69 Aligned_cols=74 Identities=11% Similarity=0.167 Sum_probs=68.4
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeec
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
...+.|.|+.. |..+.+.|.++++...|.+..+++.|++++..|++|.|+.+.++.|-+++++.+|+.|.|..-
T Consensus 23 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~ 96 (101)
T 2klc_A 23 PKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIK 96 (101)
T ss_dssp CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEEC
T ss_pred CCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEc
Confidence 46788888887 788899999999999999999999999999999999999999999999999999999988653
No 47
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.75 E-value=1.5e-07 Score=58.84 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=68.4
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHH---cCCccceEEEEECCEecCCCCCccccCCcCCceeeeeecc
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR---QSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYGR 97 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~---~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~~ 97 (104)
..+.|.|+..+|..+.+.+.+++....|.+..+++ .|++++..|++|.|+.+.++.|-+++++.+|+.|.+..-+
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 46788888888999999999999999999999998 7899999999999999999999999999999999887643
No 48
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.74 E-value=3.5e-08 Score=63.98 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=64.7
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
..+.|.|+. |..+.+.|.++++...|.+..+++.|++++..|++|+|+.+.++.|.+++++.+|+.|.+.+
T Consensus 18 ~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~ 88 (93)
T 2l7r_A 18 GSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAG 88 (93)
T ss_dssp --CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEEC
T ss_pred CcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 357777877 78889999999999999999999999999999999999999999999999999999998864
No 49
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.74 E-value=9e-08 Score=63.02 Aligned_cols=74 Identities=12% Similarity=0.174 Sum_probs=67.9
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+..+.|.|+..+|. ..+.|.++++...|.+..+++.|++++..|++|.|+.+.++.|-+++++.+|+.|.+.+
T Consensus 19 ~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 92 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVI 92 (100)
T ss_dssp CTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEE
T ss_pred CCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEE
Confidence 356789999988875 68999999999999999999999999999999999999999999999999999998754
No 50
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.72 E-value=1.5e-07 Score=64.10 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=67.4
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.|...+|..+.+.+.++++...|.+..+++.|++++..|++|+|+.+.++.|.+++++.+|+.|.+.+
T Consensus 76 ~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 147 (152)
T 3b08_A 76 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 147 (152)
T ss_dssp CEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEE
Confidence 467788888899999999999999999999999999999999999999999999999999999999998765
No 51
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=98.72 E-value=2e-07 Score=59.00 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=67.4
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
+..+.|.|+..+|....+.+.+++....|.+..+++.|++++..|++|.|+.+.++.|-.++++ +|+.|.+.
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g~~i~lv 86 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLV 86 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CCcEEEEE
Confidence 4578999999999999999999999999999999999999999999999999999999999999 89988764
No 52
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.71 E-value=1.9e-07 Score=62.03 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=70.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+.-|.|.|.+..|..+.+.+.+++....|.+.-+++.|++++..|+.|.|+.+.++.|-+++++.||+-|...|
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999877
No 53
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.70 E-value=2.5e-07 Score=62.00 Aligned_cols=84 Identities=8% Similarity=0.013 Sum_probs=74.7
Q ss_pred CCCCCCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceee
Q 034095 13 EEDKKPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCS 92 (104)
Q Consensus 13 ~~~~kp~~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~ 92 (104)
......+....-|.|.|.+..|..+.+.|.+++....|.+.-+++.|++++..|++|.|+.+.++.|-.+.++.+|+.|.
T Consensus 17 ~~~~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlh 96 (100)
T 1uh6_A 17 LVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLE 96 (100)
T ss_dssp SCCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEE
T ss_pred cccccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEE
Confidence 33333334455699999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred eeec
Q 034095 93 CKYG 96 (104)
Q Consensus 93 ~~~~ 96 (104)
+-|.
T Consensus 97 L~~~ 100 (100)
T 1uh6_A 97 LYYQ 100 (100)
T ss_dssp EECC
T ss_pred EEeC
Confidence 8874
No 54
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.69 E-value=1.4e-07 Score=66.64 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=69.9
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 18 PVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 18 p~~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
|......+.|.|+..+|..+.+.|.++++...|....+++.|++++..|++|.|..+.++.|..++++.+|+.|.+..
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 91 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 91 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEE
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeee
Confidence 444567899999999999999999999999999999999999999999999999999999999999999999998875
No 55
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.69 E-value=2e-07 Score=60.35 Aligned_cols=73 Identities=11% Similarity=0.139 Sum_probs=66.6
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHH---cCCccceEEEEECCEecCCCCCccccCCcCCceeeeeeccc
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDR---QSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYGRL 98 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~---~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~~~ 98 (104)
.|.|+..+|..+.+.|.+++....|.+..+++ .|++++..|++|.|+.+.++.|-+++++.+|+.|.|..-+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~ 77 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKP 77 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSC
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCC
Confidence 57777778889999999999999999999999 78999999999999999999999999999999998876543
No 56
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=1.1e-07 Score=63.07 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=67.2
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeecc
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYGR 97 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~~ 97 (104)
+.|.|+..+|..+.+.|.+++....|.+..+++.|++++..|++|.|+.+.++.|-.++++.+|+.|.+.+..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 4577888889999999999999999999999999999999999999999999999999999999999988653
No 57
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.58 E-value=2.7e-07 Score=59.47 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=65.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCC-CCccccCCcCCceeeeeec
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE-QTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~-~TP~~L~Medgdii~~~~~ 96 (104)
...|.|.|+..+|..+.+.|.+++....|.+..+++. ++..|++|.|+.+.++ .|.+++++.+|+.|.|...
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~ 77 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS 77 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence 4568999998889888999999999999999999887 8899999999999998 9999999999999988764
No 58
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.56 E-value=8.2e-07 Score=61.56 Aligned_cols=74 Identities=12% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+..+.|.|...+|..+.+.+.+++....|.+..+++.|++++..|++|+|+.+.++.|.+++++.+|+.|.+..
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~ 152 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNL 152 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 34578888888999999999999999999999999999999999999999999999999999999999998764
No 59
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=97.96 E-value=8.4e-09 Score=63.46 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=64.1
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|.|+..+|..+.+.+.++++...|.+..++..|++++..+++|+|..+.++.|.+++++.+|+.|.+.+
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~ 71 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQ 71 (76)
Confidence 4667777888888999999999999999999999999999999999999999999999999999998754
No 60
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.54 E-value=6.3e-08 Score=63.96 Aligned_cols=75 Identities=9% Similarity=0.170 Sum_probs=66.3
Q ss_pred CCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeec
Q 034095 21 QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
++..|+|.|.. .|..+.+.|.+++....|.+..+++.|++++..|++|.|+.+.++.|-+++++++|+.|.+...
T Consensus 25 ~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 99 (101)
T ss_dssp ----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCC
T ss_pred CCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 34568888887 7888889999999999999999999999999999999999999999999999999999988753
No 61
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=1.2e-06 Score=60.47 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=69.7
Q ss_pred CcEEEEEE-ccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeeccc
Q 034095 23 AHINLKVK-GQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYGRL 98 (104)
Q Consensus 23 ~~I~lkV~-~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~~~ 98 (104)
..|+|||+ ...+..+.+.+..++.++.|.+..++..+++.+.+|++|.|+-+.+++|-.+++..+|..|-+-+-..
T Consensus 14 ~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~ 90 (118)
T 2daf_A 14 SLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFST 90 (118)
T ss_dssp SCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEES
T ss_pred ccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecC
Confidence 45899987 77788899999999999999999999999999999999999999999999999999999998766543
No 62
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.53 E-value=6.2e-07 Score=60.95 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=65.4
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|.|...+|..+.+.+.++++...|.+..+++.|++++..+++|.|..+.++.|.+++++.+|+.|.+..
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~ 71 (152)
T 3b08_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEe
Confidence 5677777888889999999999999999999999999999999999999999999999999999998765
No 63
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=9.9e-07 Score=59.29 Aligned_cols=71 Identities=10% Similarity=0.203 Sum_probs=66.0
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
..|.|...+|..+.+.+.+++....|.+..+++.|++++..|++|+|..+.++.|-+++++.+|+.|.+..
T Consensus 10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~ 80 (114)
T 2kdi_A 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVL 80 (114)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEE
T ss_pred EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 46777788899999999999999999999999999999999999999999999999999999999998754
No 64
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.50 E-value=1e-06 Score=56.21 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=68.3
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEe-cCCCCCccccCCcCCceeeeee
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRR-LRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~r-I~~~~TP~~L~Medgdii~~~~ 95 (104)
.+.+|.|..-.|..+.+.+.++++...|.+..+++.|++++..|++|.|+. +.++.|-+++++.+|+.|.+..
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~ 82 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEV 82 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEE
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEE
Confidence 467888988899999999999999999999999999999999999999999 9999999999999999998754
No 65
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.45 E-value=2.1e-06 Score=55.80 Aligned_cols=73 Identities=11% Similarity=0.138 Sum_probs=66.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCC-CCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE-QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~-~TP~~L~Medgdii~~~~ 95 (104)
...+.|.|+...+ ...+.|.+++....|.+..+++.|++++..|++|.|+.+.++ .|-+++++.+|+.|.+..
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~ 86 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFL 86 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEE
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 4568889988777 778999999999999999999999999999999999999988 999999999999988754
No 66
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.42 E-value=1.5e-06 Score=62.13 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=66.0
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|.|+..+|..+.+.+.+++....|.+..+++.|++++..|++|.|+.+.++.|-.++++.+|+.|.+.+
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvl 71 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEE
Confidence 5777888899999999999999999999999999999999999999999999999999999999998765
No 67
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.39 E-value=2e-06 Score=57.48 Aligned_cols=74 Identities=9% Similarity=0.156 Sum_probs=66.5
Q ss_pred CCcEEEEEEccC----------CCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCcee
Q 034095 22 SAHINLKVKGQD----------GNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFC 91 (104)
Q Consensus 22 ~~~I~lkV~~~~----------g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii 91 (104)
+..|+|.|+..+ |..+.+.|.++++...|.+..++..|++++..|++|.|..+.++.|-+++++.+|+.|
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i 102 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVI 102 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEE
Confidence 357888888653 5678899999999999999999999999999999999999999999999999999999
Q ss_pred eeee
Q 034095 92 SCKY 95 (104)
Q Consensus 92 ~~~~ 95 (104)
.+.+
T Consensus 103 ~lv~ 106 (115)
T 1we7_A 103 HLAL 106 (115)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8765
No 68
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.37 E-value=2e-06 Score=63.14 Aligned_cols=72 Identities=13% Similarity=0.193 Sum_probs=68.8
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.|+..+|..+.+.|.+++....|.+..+++.|++++..|++|.|+.+.++.|.+++++++|+.|.+..
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~Lvl 176 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 176 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECC
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEE
Confidence 489999999999999999999999999999999999999999999999999999999999999999999764
No 69
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.37 E-value=3.7e-06 Score=55.64 Aligned_cols=74 Identities=11% Similarity=0.191 Sum_probs=64.8
Q ss_pred CCcEEEEEEccCCCEEEE--EEeCCchHHHHHHHH-HHHcCCccceEEEEECCEecCCCCCccccCC-cCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFF--RIKRSTQLKKLMNAY-CDRQSVELNSIAFLFDGRRLRGEQTPDEVIL-LFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~F--kIK~tt~L~kLm~aY-~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~M-edgdii~~~~ 95 (104)
...+.|.|+...|....+ .+.+++....|.+.. ++..|++++..|++|.|+.+..+.|-+++++ .+|+.|-+.+
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmv 94 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMI 94 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEE
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEE
Confidence 456888888888876555 455999999999998 7778999999999999999999999999999 9999998875
No 70
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.32 E-value=6.6e-08 Score=66.04 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=0.0
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|.|...+|..+.+.|.++++...|....+++.|++++..+++|+|..+.++.|.+++++++|+.|.+.+
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~ 71 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (128)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEE
Confidence 4667777888889999999999999999999999999999999999999999999999999999998764
No 71
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.32 E-value=2.2e-06 Score=56.90 Aligned_cols=74 Identities=9% Similarity=0.060 Sum_probs=68.5
Q ss_pred CCcEEEEEEcc---CCCEEEEEEeC-CchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQ---DGNEVFFRIKR-STQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~---~g~~v~FkIK~-tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+..|+|.|+.. +|..+.+.+.+ +++...|.+..++..|++++..|++|.|..+.++.|-+++++.+|+.|.+.+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~ 102 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSL 102 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEEC
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEE
Confidence 45799999987 78888999998 9999999999999999999999999999999999999999999999998764
No 72
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.25 E-value=4.3e-06 Score=55.30 Aligned_cols=74 Identities=19% Similarity=0.165 Sum_probs=62.3
Q ss_pred cEEEEEEccCC---CEEEEEE--------eC-CchHHHHHHHHHHHc--CCccce-EEEEECCEecCCCCCccccCCcCC
Q 034095 24 HINLKVKGQDG---NEVFFRI--------KR-STQLKKLMNAYCDRQ--SVELNS-IAFLFDGRRLRGEQTPDEVILLFC 88 (104)
Q Consensus 24 ~I~lkV~~~~g---~~v~FkI--------K~-tt~L~kLm~aY~~~~--g~~~~~-lrF~fdG~rI~~~~TP~~L~Medg 88 (104)
.|+|.|+..++ ....+.+ .+ ++....|.+..+++. |++++. .|++|.|+.+.++.|-.++++.+|
T Consensus 12 ~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g 91 (107)
T 1x1m_A 12 DWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPG 91 (107)
T ss_dssp SCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTT
T ss_pred ceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCC
Confidence 35666666566 5666774 44 499999999999999 999999 999999999999999999999999
Q ss_pred ceeeeeecc
Q 034095 89 AFCSCKYGR 97 (104)
Q Consensus 89 dii~~~~~~ 97 (104)
+.|.+....
T Consensus 92 ~~i~lv~~~ 100 (107)
T 1x1m_A 92 STVHVLRKS 100 (107)
T ss_dssp CEEEEEESS
T ss_pred CEEEEEeCC
Confidence 999886543
No 73
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.24 E-value=6.3e-06 Score=52.82 Aligned_cols=73 Identities=11% Similarity=0.063 Sum_probs=64.3
Q ss_pred CcEEEEEEccCCC--EEEEEEeCCchHHHHHHHHHHHc--CCccceEEEEECCEecCCCCCcccc--CCcCCceeeeee
Q 034095 23 AHINLKVKGQDGN--EVFFRIKRSTQLKKLMNAYCDRQ--SVELNSIAFLFDGRRLRGEQTPDEV--ILLFCAFCSCKY 95 (104)
Q Consensus 23 ~~I~lkV~~~~g~--~v~FkIK~tt~L~kLm~aY~~~~--g~~~~~lrF~fdG~rI~~~~TP~~L--~Medgdii~~~~ 95 (104)
..|+|.|+..++. .+.+.+.+++....|.+.-++.. +++++..|++|.|+.+.++.|-+++ ++.+|..|.+..
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~ 84 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC 84 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEEC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEe
Confidence 4578888887777 45666669999999999999998 9999999999999999999999999 999999998764
No 74
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.21 E-value=9.3e-06 Score=51.62 Aligned_cols=64 Identities=14% Similarity=0.063 Sum_probs=59.6
Q ss_pred cCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 32 QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 32 ~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
-.|..+.+.+.+++....|.+..++..|++++..|++|+|+.+.++.|-+++++.+|+.|.|..
T Consensus 19 ~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 19 FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 3677788999999999999999999999999999999999999999999999999999998764
No 75
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.18 E-value=2.1e-07 Score=66.07 Aligned_cols=70 Identities=13% Similarity=0.233 Sum_probs=0.0
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|.|...+|..+.+.|.+++....|....+++.|++++..|++|.|..|.++.|.+++++++|+.|.+.+
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvl 71 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 71 (152)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEe
Confidence 4667777888889999999999999999999999999999999999999999999999999999998764
No 76
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.17 E-value=5.4e-06 Score=53.85 Aligned_cols=77 Identities=9% Similarity=-0.019 Sum_probs=66.1
Q ss_pred CCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeec
Q 034095 18 PVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 18 p~~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
+......|+|+|+. .+..+.+.+.+++.+..|.+.-++..|++++..|++|.|..+ .+.|-.++++.+|+.|.+.-.
T Consensus 11 ~~~~~~~~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 11 GGVGKELVDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCCCCCCEEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCS
T ss_pred CCCCCceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEec
Confidence 33345678888884 577778999999999999999999999999999999999999 566999999999999887643
No 77
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.16 E-value=1.3e-05 Score=53.51 Aligned_cols=72 Identities=10% Similarity=0.044 Sum_probs=63.9
Q ss_pred cEEEEEEccC----CCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 24 HINLKVKGQD----GNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~----g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
-.+|.|...+ +..+.+.|.++.....|.+.-+++.|++++..|++|.|+.+.++.|-++.++.+|..|-|+.
T Consensus 15 ~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti~vl~ 90 (100)
T 1wju_A 15 IATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKAMVLE 90 (100)
T ss_dssp EEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEEEEEC
T ss_pred eEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEEEEEE
Confidence 3455555555 67889999999999999999999999999999999999999999999999999999996664
No 78
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.15 E-value=1.4e-05 Score=52.24 Aligned_cols=73 Identities=7% Similarity=-0.047 Sum_probs=62.5
Q ss_pred CcEEEEEEccCC----CEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCC-CCccccCCcCCceeeeee
Q 034095 23 AHINLKVKGQDG----NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE-QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 23 ~~I~lkV~~~~g----~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~-~TP~~L~Medgdii~~~~ 95 (104)
..+.|.|....+ ..+.+.|..++....|.+.-+++.|++++..|++|.|+.+.++ .|-+++++.+|+.|.|..
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~ 83 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQ 83 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECB
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEE
Confidence 346666665433 5778999999999999999999999999999999999999877 699999999999988764
No 79
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.09 E-value=3.3e-05 Score=49.20 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=63.5
Q ss_pred CcEEEEEEccCCCEEEEEEeCC-----chHHHHHHHHHHHcCCccceEEEEECCEecCC-CCCccccCCcCCceeeeee
Q 034095 23 AHINLKVKGQDGNEVFFRIKRS-----TQLKKLMNAYCDRQSVELNSIAFLFDGRRLRG-EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~t-----t~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~-~~TP~~L~Medgdii~~~~ 95 (104)
..|+|.|.. .+....+.+..+ +....|.+.-++..|++++..|++|.|..+.+ +.|-.++++.+|+.|-+..
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~ 83 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIG 83 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEES
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEe
Confidence 468899987 477778899985 99999999999999999999999999999998 4589999999999988754
No 80
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.07 E-value=1e-05 Score=52.35 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=66.6
Q ss_pred EEEEEEccCCCEEEEEEe--CCchHHHHHHHH-HHHcCCccceEEEEECCEecCCCCCccccCC-cCCceeeeeeccccc
Q 034095 25 INLKVKGQDGNEVFFRIK--RSTQLKKLMNAY-CDRQSVELNSIAFLFDGRRLRGEQTPDEVIL-LFCAFCSCKYGRLNT 100 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK--~tt~L~kLm~aY-~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~M-edgdii~~~~~~~~~ 100 (104)
+.|.|++..|....+.|. +++....|.+.- +++.|++++..|++|.|+.+.++.|-+++++ .+|..|.|. |+-|+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~-~~~~~ 80 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVM-IKPNL 80 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEE-ECCCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEE-cCCCc
Confidence 467788888887777766 999999999998 8899999999999999999999999999999 788888765 55566
Q ss_pred Cc
Q 034095 101 GH 102 (104)
Q Consensus 101 ~~ 102 (104)
-|
T Consensus 81 ~~ 82 (87)
T 2lxa_A 81 EH 82 (87)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 81
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.07 E-value=2.6e-05 Score=54.81 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=66.2
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.|...+|..+.+.|.++.....|.+.-+++.|++++..|++|+|+.+.++.|-.++++.+|+.|.+..
T Consensus 96 g~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~ 167 (172)
T 3u30_A 96 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 167 (172)
T ss_dssp CEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC
T ss_pred cccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEE
Confidence 456667778899999999999999999999999999999999999999999999999999999999998753
No 82
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.05 E-value=2.9e-05 Score=53.64 Aligned_cols=72 Identities=17% Similarity=0.061 Sum_probs=66.7
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEE-E-CCEecCCCCCccccCCcCCceeeeeec
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL-F-DGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~-f-dG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
+.|.|...+|..+.+.+.++++...|.+.-++..|++++.-|++ | .|..+.++.|-+++++.+|+.|.+..-
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEcc
Confidence 56777777899999999999999999999999999999999999 9 799999999999999999999998764
No 83
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.99 E-value=3.5e-05 Score=50.16 Aligned_cols=73 Identities=8% Similarity=-0.004 Sum_probs=64.5
Q ss_pred CCcEEEEEEccCCCEE-EEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeec
Q 034095 22 SAHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v-~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
...|+|+|+. .|..+ .+.+..++.+..|...-++..|++++..|++|.|..+.++ |-+++++.+|+.|-+...
T Consensus 5 ~~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 5 SSGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CCEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred CcEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 3468888885 56676 5999999999999999999999999999999999999988 999999999999977643
No 84
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=97.96 E-value=2.3e-05 Score=50.13 Aligned_cols=73 Identities=12% Similarity=0.030 Sum_probs=63.5
Q ss_pred CcEEEEEEccCCCEEEE-EEeCCchHHHHHHHHHHHcCCccceEEEE---ECCEecCCCCCccccCCcCCceeeeeec
Q 034095 23 AHINLKVKGQDGNEVFF-RIKRSTQLKKLMNAYCDRQSVELNSIAFL---FDGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~F-kIK~tt~L~kLm~aY~~~~g~~~~~lrF~---fdG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
..|+|.|.. .|..+.+ .+..+++...|.+.-+++.|++++..|++ |.|..+.++.|-+++++.+|+.|-+...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 346666665 5767778 88999999999999999999999999999 9999999999999999999999877543
No 85
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.94 E-value=0.00015 Score=49.40 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=65.8
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHH------HcCC--ccceEEEEECCEecCCCCCccccCCcCCceeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD------RQSV--ELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~------~~g~--~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~ 93 (104)
.+.|.|+|+.-.|..+.|.|.+++....|.+..++ +-++ +++..|++|.|+.|.++.|-+++++..++.+-+
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 45799999998899999999999999999999998 4453 689999999999999999999999988876443
Q ss_pred -eecccc
Q 034095 94 -KYGRLN 99 (104)
Q Consensus 94 -~~~~~~ 99 (104)
|.-|+.
T Consensus 94 hLvlr~~ 100 (116)
T 1wgh_A 94 HLVARET 100 (116)
T ss_dssp EEEECSS
T ss_pred EEEccCC
Confidence 334443
No 86
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.92 E-value=3.1e-05 Score=51.96 Aligned_cols=74 Identities=12% Similarity=0.073 Sum_probs=64.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc---------------ceEEEEECCEecC-CCCCccccCC
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL---------------NSIAFLFDGRRLR-GEQTPDEVIL 85 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~---------------~~lrF~fdG~rI~-~~~TP~~L~M 85 (104)
...++|.|..-+|..+.+.|.+++....|.++-.++.++++ ..+++.|.|+.|. ++.|-+++++
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 44588999999999999999999999999999999988765 5789999999997 5689999999
Q ss_pred cCCceeeeee
Q 034095 86 LFCAFCSCKY 95 (104)
Q Consensus 86 edgdii~~~~ 95 (104)
.+|+.|-+..
T Consensus 85 ~~g~~l~lv~ 94 (105)
T 1v2y_A 85 RNRDEVSFIK 94 (105)
T ss_dssp CSSEEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999986543
No 87
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=97.89 E-value=6.1e-05 Score=51.87 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=63.2
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHH------HcCC--ccceEEEEECCEecCCCCCccccCCcCCcee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD------RQSV--ELNSIAFLFDGRRLRGEQTPDEVILLFCAFC 91 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~------~~g~--~~~~lrF~fdG~rI~~~~TP~~L~Medgdii 91 (104)
...|.|+|+..+|....|.|.+++....|.+..++ +-++ +++..|++|.|+.+.++.|-+++++..|+++
T Consensus 15 ~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~ 92 (125)
T 2gow_A 15 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTT 92 (125)
T ss_dssp TTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEE
T ss_pred CCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCce
Confidence 45799999988999999999999999999999998 5566 5899999999999999999999999999863
No 88
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=97.88 E-value=8.8e-05 Score=58.02 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=68.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
...+.|.|+..+|..+.+.|.+++....|.+.-+++.|++++..|++|.|+.+.++.|-+++++.+|+.|.+..
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~Lvl 304 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL 304 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEE
Confidence 46788899988898999999999999999999999999999999999999999999999999999999998753
No 89
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.85 E-value=2.8e-05 Score=62.04 Aligned_cols=78 Identities=10% Similarity=0.167 Sum_probs=68.9
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHH---HcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeecccc
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCD---RQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYGRLN 99 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~---~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~~~~ 99 (104)
..+.|.|+..+|..+.+.|..++....|.+..++ +.|++.+..|++|.|+.|.++.|-.++++.+|++|-++.-|+.
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 3466777777888889999999999999999998 4569999999999999999999999999999999988887765
Q ss_pred c
Q 034095 100 T 100 (104)
Q Consensus 100 ~ 100 (104)
.
T Consensus 86 ~ 86 (368)
T 1oqy_A 86 A 86 (368)
T ss_dssp S
T ss_pred C
Confidence 3
No 90
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=97.83 E-value=6.3e-05 Score=49.64 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=61.6
Q ss_pred CCcEEEEEEccCCC--EEEEEEeCCchHHHHHHHHHHHc-CCc-cceEEEEECCEecCCCCCcccc--CCcCCceeee
Q 034095 22 SAHINLKVKGQDGN--EVFFRIKRSTQLKKLMNAYCDRQ-SVE-LNSIAFLFDGRRLRGEQTPDEV--ILLFCAFCSC 93 (104)
Q Consensus 22 ~~~I~lkV~~~~g~--~v~FkIK~tt~L~kLm~aY~~~~-g~~-~~~lrF~fdG~rI~~~~TP~~L--~Medgdii~~ 93 (104)
...|.|.|+..++. .+.+.+.+++....|.+.-+++. |.+ ++..|++|.|+.+.++.|-+++ ++.+|..|.+
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihL 98 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHL 98 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEe
Confidence 45689999987776 67888999999999999999875 554 5999999999999999999999 9999998865
No 91
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=97.82 E-value=0.00021 Score=48.03 Aligned_cols=72 Identities=7% Similarity=0.002 Sum_probs=62.1
Q ss_pred cEEEEEEccCC--CEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCC-cCCceeeeee
Q 034095 24 HINLKVKGQDG--NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVIL-LFCAFCSCKY 95 (104)
Q Consensus 24 ~I~lkV~~~~g--~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~M-edgdii~~~~ 95 (104)
.+.|.|.+..+ ..+.+.|.+++....|.+...++.|++++.-|++|.|+-+.++.|-+++++ ++|+.+-.++
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l 98 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYL 98 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEE
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEE
Confidence 44455556553 577999999999999999999999999999999999998889999999999 6999998765
No 92
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.81 E-value=3.5e-05 Score=50.97 Aligned_cols=73 Identities=12% Similarity=0.155 Sum_probs=65.2
Q ss_pred CcEEEEEEccCCCEEEEEEe-CCchHHHHHHHHHHHcCCccceEEEEECCE-----------e----cCCCCCccccCCc
Q 034095 23 AHINLKVKGQDGNEVFFRIK-RSTQLKKLMNAYCDRQSVELNSIAFLFDGR-----------R----LRGEQTPDEVILL 86 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK-~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~-----------r----I~~~~TP~~L~Me 86 (104)
..+.|+|++.+|.. .+.|. +++.+..|.+.-+++.++++...++.|.|. . +.++.|-.++++.
T Consensus 6 ~~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~ 84 (107)
T 1wf9_A 6 SGTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA 84 (107)
T ss_dssp CCEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC
T ss_pred CeEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC
Confidence 44889999999966 68898 999999999999999999999999999988 4 3678899999999
Q ss_pred CCceeeeeec
Q 034095 87 FCAFCSCKYG 96 (104)
Q Consensus 87 dgdii~~~~~ 96 (104)
+|+.|-+.+.
T Consensus 85 ~G~~L~l~~~ 94 (107)
T 1wf9_A 85 HGSMVYLAYE 94 (107)
T ss_dssp TTCEEECCCS
T ss_pred CCCEEEEEeC
Confidence 9999988775
No 93
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.79 E-value=0.00015 Score=50.23 Aligned_cols=68 Identities=12% Similarity=0.215 Sum_probs=60.2
Q ss_pred CcEEEEEEccCCCEE-EEEEeCCchHHHHHHHHHH-----HcCCcc--ceEEEEECCEecCCCCCccccCCcCCce
Q 034095 23 AHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCD-----RQSVEL--NSIAFLFDGRRLRGEQTPDEVILLFCAF 90 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v-~FkIK~tt~L~kLm~aY~~-----~~g~~~--~~lrF~fdG~rI~~~~TP~~L~Medgdi 90 (104)
+.+.|+|+..+|..+ .+.+.+++....|.+.-++ +-++++ +..|++|.|+.+.++.|-+++.+.+|++
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~ 90 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNL 90 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCc
Confidence 588999999999988 6999999999999988854 445665 8999999999999999999999999986
No 94
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=97.76 E-value=0.00025 Score=46.34 Aligned_cols=72 Identities=6% Similarity=-0.051 Sum_probs=62.9
Q ss_pred CCcEEEEEEccCCC--EEEEEEeCCchHHHHHHHHHHHcCCccceEEEEEC--CE---ec-CCCCCccccCCcCCceeee
Q 034095 22 SAHINLKVKGQDGN--EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD--GR---RL-RGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 22 ~~~I~lkV~~~~g~--~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fd--G~---rI-~~~~TP~~L~Medgdii~~ 93 (104)
+..|+|.|....+. .+.+++.++.....|.+.-.++.|+|++.-|++|. |. .+ .++.|-.++++++|+.|-|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihl 92 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHV 92 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEE
Confidence 57899999876654 67899999999999999999999999999999996 55 44 7788999999999998865
No 95
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=97.60 E-value=5.7e-05 Score=47.82 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=59.7
Q ss_pred EEEEEccCCCEEEEE-EeCCchHHHHHHHHHHHcCCccceEEEEEC--CEecC---CCCCccccCCcCCceeeeeec
Q 034095 26 NLKVKGQDGNEVFFR-IKRSTQLKKLMNAYCDRQSVELNSIAFLFD--GRRLR---GEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 26 ~lkV~~~~g~~v~Fk-IK~tt~L~kLm~aY~~~~g~~~~~lrF~fd--G~rI~---~~~TP~~L~Medgdii~~~~~ 96 (104)
.|+|+..+|..+ +. +..++.+..|....+++.|++++..|++|. ++.+. ++.|-+++++.+|+.|-|...
T Consensus 2 ~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 2 RVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred EEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 578888888664 66 889999999999999999999888888886 46664 578999999999999988765
No 96
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.50 E-value=0.00048 Score=44.31 Aligned_cols=73 Identities=5% Similarity=-0.116 Sum_probs=62.5
Q ss_pred CcEEEEEEccCCC-EEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECC---Ee----cCCCCCccccCCcCCceeeee
Q 034095 23 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG---RR----LRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 23 ~~I~lkV~~~~g~-~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG---~r----I~~~~TP~~L~Medgdii~~~ 94 (104)
..|+|.|...... ...+++.+++....|...-+++.|++++..|++|.| .. +.++.|-.++++++|+.|.|.
T Consensus 6 ~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~ 85 (95)
T 1v6e_A 6 SGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVI 85 (95)
T ss_dssp CCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEB
T ss_pred cEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEE
Confidence 3588999876553 468899999999999999999999999999999976 43 367889999999999999876
Q ss_pred e
Q 034095 95 Y 95 (104)
Q Consensus 95 ~ 95 (104)
-
T Consensus 86 d 86 (95)
T 1v6e_A 86 D 86 (95)
T ss_dssp C
T ss_pred E
Confidence 4
No 97
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=97.50 E-value=0.00047 Score=45.27 Aligned_cols=74 Identities=7% Similarity=-0.023 Sum_probs=62.7
Q ss_pred CCCcEEEEEEccCC--CEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCE---e----cCCCCCccccCCcCCcee
Q 034095 21 QSAHINLKVKGQDG--NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR---R----LRGEQTPDEVILLFCAFC 91 (104)
Q Consensus 21 ~~~~I~lkV~~~~g--~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~---r----I~~~~TP~~L~Medgdii 91 (104)
++..|+|.|..... ..+.++|.++.....|.+.-.++.|+|++.-|++|.|. . ..++.|-.++++++|+.|
T Consensus 11 ~~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~I 90 (97)
T 2kj6_A 11 GDDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRL 90 (97)
T ss_dssp CCCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEE
T ss_pred CCceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEE
Confidence 46688899987444 35789999999999999999999999999999999873 3 367789999999999998
Q ss_pred eee
Q 034095 92 SCK 94 (104)
Q Consensus 92 ~~~ 94 (104)
-|.
T Consensus 91 hlv 93 (97)
T 2kj6_A 91 HII 93 (97)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
No 98
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=97.48 E-value=0.00096 Score=44.95 Aligned_cols=74 Identities=8% Similarity=-0.015 Sum_probs=63.3
Q ss_pred CcEEEEEEccCCC-EEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECC---Ee---c-CCCCCccccCCcCCceeeee
Q 034095 23 AHINLKVKGQDGN-EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG---RR---L-RGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 23 ~~I~lkV~~~~g~-~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG---~r---I-~~~~TP~~L~Medgdii~~~ 94 (104)
..|+|.|....+. .+.+++.++.+...|...-+++.|++++..|+.|.| .. + .++.|-.++++++|..|-|.
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvv 84 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAV 84 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEE
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEE
Confidence 4689999876553 468899999999999999999999999999999976 43 3 67889999999999999877
Q ss_pred ec
Q 034095 95 YG 96 (104)
Q Consensus 95 ~~ 96 (104)
-.
T Consensus 85 d~ 86 (122)
T 1t0y_A 85 DV 86 (122)
T ss_dssp EC
T ss_pred eC
Confidence 53
No 99
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.45 E-value=0.00025 Score=45.57 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=61.6
Q ss_pred cEEEEEEccCCCEE--EE-EEeCCchHHHHHHHHHHH-cCCccceEEEEEC--CEecCCCCCccccCCcCCceeeee
Q 034095 24 HINLKVKGQDGNEV--FF-RIKRSTQLKKLMNAYCDR-QSVELNSIAFLFD--GRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 24 ~I~lkV~~~~g~~v--~F-kIK~tt~L~kLm~aY~~~-~g~~~~~lrF~fd--G~rI~~~~TP~~L~Medgdii~~~ 94 (104)
.+.|.|....|... .+ .|.+++....|.+..++. .|++++..|+.|. |..+.++.|-+++++.+|..|-|+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~K 86 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYFR 86 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEEC
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEEE
Confidence 57888888877664 46 899999999999999995 7899999999876 999999999999999999987664
No 100
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=97.42 E-value=0.001 Score=45.52 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=61.3
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCc-------CCceeeeee
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILL-------FCAFCSCKY 95 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Me-------dgdii~~~~ 95 (104)
|.|+|+.. ...+.+.|.+++....|...-+++.|++++.-|++|+|+.+.++.|-.++++. ++..|.+..
T Consensus 3 mfl~ir~~-ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~l 79 (118)
T 2fnj_B 3 VFLMIRRH-KTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEEEEB-TEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred EEEEEecC-CEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEe
Confidence 56777663 24578899999999999999999999999999999999999999999999999 677776654
No 101
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=97.33 E-value=0.002 Score=44.13 Aligned_cols=70 Identities=14% Similarity=0.076 Sum_probs=61.8
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcC-------Cceeeeee
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLF-------CAFCSCKY 95 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Med-------gdii~~~~ 95 (104)
+-|+|+. .+..+.+.+++++....|.....++.|++++.-|++|+|+.+.++.|-++.++.+ ++.|-..+
T Consensus 3 vFl~Ikr-~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 3 VFLMIRR-HKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp EEEEEEE-BTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred eEEEEec-CCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEE
Confidence 4466655 4567888999999999999999999999999999999999999999999999999 88876654
No 102
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.29 E-value=0.0019 Score=41.51 Aligned_cols=76 Identities=12% Similarity=0.119 Sum_probs=63.0
Q ss_pred CCcEEEEEEc---cCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECC-----Ee--c-CCCCCccccCCcCCce
Q 034095 22 SAHINLKVKG---QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG-----RR--L-RGEQTPDEVILLFCAF 90 (104)
Q Consensus 22 ~~~I~lkV~~---~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG-----~r--I-~~~~TP~~L~Medgdi 90 (104)
...|+|.|.. .++..+..++.++.....|...-++..|+++...|+.|.+ .. + .++.|-.+++++||+.
T Consensus 7 ~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~ 86 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDC 86 (97)
T ss_dssp SCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCE
T ss_pred CccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCE
Confidence 4578888875 3677888999999999999999999999999999999863 12 3 4577789999999999
Q ss_pred eeeeecc
Q 034095 91 CSCKYGR 97 (104)
Q Consensus 91 i~~~~~~ 97 (104)
|-|..-.
T Consensus 87 I~V~d~~ 93 (97)
T 1wjn_A 87 LLVRWSG 93 (97)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9887643
No 103
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.03 E-value=0.0024 Score=41.98 Aligned_cols=69 Identities=17% Similarity=0.118 Sum_probs=61.3
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeee
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~ 93 (104)
..|.|...+++...++|.+++.|..+.+.-|+++|++.+...+.|++..|.-+..-.-.++-+|.-...
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLEL 78 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEM 78 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEE
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEE
Confidence 378899999999999999999999999999999999999999999999998887777777777765543
No 104
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=96.53 E-value=0.0011 Score=41.99 Aligned_cols=68 Identities=7% Similarity=0.126 Sum_probs=54.1
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEe-----cCCCCCccccCCcCCceeee
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRR-----LRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~r-----I~~~~TP~~L~Medgdii~~ 93 (104)
+.|+|++.+|.. ++.+.+++.+..|.+.-++..+++.+...+++.-.+ ..++.|-++|++..||.|-|
T Consensus 5 m~lRvrs~~G~~-Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l 77 (80)
T 2pjh_A 5 IIIRVQSPDGVK-RITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFL 77 (80)
T ss_dssp CCCEEECSSEEE-ECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC
T ss_pred EEEEEECCCCCE-EEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEE
Confidence 678999999954 556789999999999999999988766555554333 33788899999999998865
No 105
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=96.50 E-value=0.013 Score=37.34 Aligned_cols=70 Identities=1% Similarity=-0.082 Sum_probs=58.2
Q ss_pred EEEEEEcc-CC-CEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEE-------CCEecCCCCCccccCCcCCceeeee
Q 034095 25 INLKVKGQ-DG-NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-------DGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 25 I~lkV~~~-~g-~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~f-------dG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
|+|.|... .+ .....++.++.....|.+.-.++.|+|++.-|++| -|..+.++.|-.++++++|..|-|.
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlv 81 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVV 81 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEE
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEE
Confidence 55666532 23 33478899999999999999999999999999997 4778889999999999999998764
No 106
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=96.36 E-value=0.0074 Score=46.95 Aligned_cols=74 Identities=14% Similarity=0.114 Sum_probs=63.1
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEE---ECCEecCCCCCccccCCcCCceeeeeecc
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL---FDGRRLRGEQTPDEVILLFCAFCSCKYGR 97 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~---fdG~rI~~~~TP~~L~Medgdii~~~~~~ 97 (104)
...|+|+|.. .|....+.|.++++...|.+.-++..|+++..-|++ |.|..+.++.|-.++++.+|..|-+ +|.
T Consensus 3 ~~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L-~gs 79 (320)
T 3shq_A 3 VKEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMM-VGS 79 (320)
T ss_dssp -CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEE-ECC
T ss_pred CceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEE-Ecc
Confidence 3468888886 677888999999999999999999999999999999 8999999999999999999998854 443
No 107
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=96.31 E-value=0.00063 Score=49.96 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=0.0
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.|.|...+|..+.+.|.+++....|...-++..|++++..|++|+|..|.++.|-. ++..|.+.+
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvl 66 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSL 66 (189)
T ss_dssp ----------------------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEE
Confidence 35566667888899999999999999999999999999999999999998877655 888887654
No 108
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=95.99 E-value=0.02 Score=36.74 Aligned_cols=72 Identities=15% Similarity=0.173 Sum_probs=60.2
Q ss_pred CcEEEEEE--ccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc-----ceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 23 AHINLKVK--GQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-----NSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 23 ~~I~lkV~--~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~-----~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
.+|+|.+- ...+..+-++|...-++++|.+.-.+..+++. ..+|..=-|.-+.++++-++.++.|||++-||
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Leil 81 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEIL 81 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEEC
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEEC
Confidence 46777776 46788899999999999999999999988765 34444446899999999999999999999875
No 109
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.92 E-value=0.11 Score=34.00 Aligned_cols=74 Identities=7% Similarity=0.041 Sum_probs=60.4
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEE--CCEecCCCCCccccCCcCCceeeeeecccc
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF--DGRRLRGEQTPDEVILLFCAFCSCKYGRLN 99 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~f--dG~rI~~~~TP~~L~Medgdii~~~~~~~~ 99 (104)
-+.++|.- .|..+.+.+.++++...|...-+++.|+++..-|++| .|. +.++.|-.++++..|..|-+..=.++
T Consensus 9 m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 9 MLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp EEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred eEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 35555555 6778889999999999999999999999999988886 455 88888999999999988877554443
No 110
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=94.72 E-value=0.34 Score=30.08 Aligned_cols=71 Identities=14% Similarity=0.116 Sum_probs=56.2
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEEC--CEec---CCCCCccccCCcCCceeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD--GRRL---RGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fd--G~rI---~~~~TP~~L~Medgdii~~ 93 (104)
....+|.|+-.+|..+.-+...+++++.|++.-.. .+.+...++|.-. .+.+ ..+.|-+++++..++.+-|
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~v 80 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFL 80 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEE
Confidence 34678899999999998899999999999985444 6777788888843 5556 3578999999998887765
No 111
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.37 E-value=0.64 Score=30.40 Aligned_cols=72 Identities=10% Similarity=0.120 Sum_probs=56.1
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEEC--CEecC--CCCCccccCCcCCceeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD--GRRLR--GEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fd--G~rI~--~~~TP~~L~Medgdii~~~ 94 (104)
...++|.|+-.+|..+.=+...+.+++.|++.-. ..+.....++|.-. .+.+. .++|-++++|....++-|.
T Consensus 21 ~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~-~~~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve 96 (109)
T 2cr5_A 21 EEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMM-KVGYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVE 96 (109)
T ss_dssp SSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHH-HHTCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHH-hcCCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEE
Confidence 4689999999999999888899999999987544 45656667777643 44454 4789999999999888664
No 112
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=93.12 E-value=0.089 Score=36.07 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=33.7
Q ss_pred EEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEe
Q 034095 37 VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRR 73 (104)
Q Consensus 37 v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~r 73 (104)
..|||.++++|..|.+..++..|++.+.+|||+=-.|
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEECCCC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEeecC
Confidence 4799999999999999999999999999999985444
No 113
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.10 E-value=0.69 Score=27.82 Aligned_cols=60 Identities=10% Similarity=0.251 Sum_probs=46.6
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
++|+|-++.+++ .+.+...+.+..|.+.. +++...+.+..||+-+..++ -+.+||.|.++
T Consensus 5 m~i~vNg~~~~~-~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii 64 (70)
T 1ryj_A 5 MKFTVITDDGKK-ILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVI 64 (70)
T ss_dssp EEEEEEETTEEE-EEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEE
T ss_pred EEEEEeCccCce-eEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEE
Confidence 677776655433 56777778888888754 67788889999999998665 79999999886
No 114
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=92.50 E-value=0.82 Score=29.85 Aligned_cols=51 Identities=12% Similarity=0.158 Sum_probs=43.1
Q ss_pred EEEEEEccC-CCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecC
Q 034095 25 INLKVKGQD-GNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLR 75 (104)
Q Consensus 25 I~lkV~~~~-g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~ 75 (104)
.-|.|-+-+ +..+.|-|.++.++..+.++-+++.|+++..=+++|.|+.+.
T Consensus 13 kvvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~ 64 (94)
T 4efo_A 13 MVIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLV 64 (94)
T ss_dssp EEEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEEC
T ss_pred eeEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccc
Confidence 345565544 555699999999999999999999999999999999997765
No 115
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.45 E-value=0.49 Score=30.94 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=49.6
Q ss_pred CCcEEEEEEccCCCE-EEEEEeCCchHHHHHHHHHHHcCCccceEEEEEC---CEecCCCCCccccCCcC
Q 034095 22 SAHINLKVKGQDGNE-VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD---GRRLRGEQTPDEVILLF 87 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~-v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fd---G~rI~~~~TP~~L~Med 87 (104)
...+.|-|-- -+++ ...+|.+..||+.|+-+-|++..+++..+.|+=| ++.+.-+.+-.+|+|.+
T Consensus 8 E~TvRLvVNy-~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINF-KKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEE-TTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEee-cCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3456665543 4444 4889999999999999999999999999999875 45555566677777765
No 116
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=92.23 E-value=0.64 Score=34.17 Aligned_cols=71 Identities=8% Similarity=0.040 Sum_probs=54.9
Q ss_pred cEEEEEEccC--CCEEEEEEeCCchHHHHHHHHHHHcCCccc-eEEEEE-C----CEecCC-CCCccccCCcCCceeeee
Q 034095 24 HINLKVKGQD--GNEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLF-D----GRRLRG-EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 24 ~I~lkV~~~~--g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~-~lrF~f-d----G~rI~~-~~TP~~L~Medgdii~~~ 94 (104)
.+.|++.... .+.+.+.+.+...++.|++.-|+..+++.+ .+|++. + ...+.. +.|..++.+.+|+.|-+-
T Consensus 139 P~~l~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE 218 (231)
T 3jyu_A 139 LLELKLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIE 218 (231)
T ss_dssp CEEEEEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred cceEEEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEE
Confidence 3445554322 234568889999999999999999999997 799998 2 456764 689999999999987653
No 117
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=92.19 E-value=1.5 Score=28.73 Aligned_cols=73 Identities=10% Similarity=0.016 Sum_probs=56.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEEC--CEecC---CCCCccccCCcCCceeeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD--GRRLR---GEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fd--G~rI~---~~~TP~~L~Medgdii~~~ 94 (104)
....+|.|+-.+|..+.-+...+.+++.|++.-....+.+...+.|.-. -+.+. .++|-++++|-....+-|.
T Consensus 11 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~ 88 (109)
T 2dzk_A 11 STIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLL 88 (109)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEE
Confidence 3467889999999999889999999999999877666666667777653 33344 3679999999998877665
No 118
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=92.10 E-value=1.5 Score=29.38 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=55.8
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEEC--CEecC---CCCCccccCCcCCceeee
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD--GRRLR---GEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fd--G~rI~---~~~TP~~L~Medgdii~~ 93 (104)
...++|.|+-.+|..+.-+...+.+|+.|++.-... +.+...+.|+-. .+.+. .+.|-.+++|-..+.+-|
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv 116 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFV 116 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEE
Confidence 467899999999999988999999999999876554 666677777743 55562 478999999988766544
No 119
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=91.79 E-value=0.54 Score=30.12 Aligned_cols=46 Identities=11% Similarity=0.196 Sum_probs=41.5
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEEC
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD 70 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fd 70 (104)
..++|||.-+ -.|.++|.+..++..|.+.-+++.+++.+.+++.|-
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk 49 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR 49 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEee
Confidence 4589999987 578999999999999999999999999999999884
No 120
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=91.49 E-value=0.67 Score=27.95 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=38.7
Q ss_pred EEEeCCchHHHHHHHHHHHcCCcc--ceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 39 FRIKRSTQLKKLMNAYCDRQSVEL--NSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 39 FkIK~tt~L~kLm~aY~~~~g~~~--~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
+.+ ..+.+..|.+.-+.+.++.. ..+.+..||+.|...+|| +.+||.|.++
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~----l~~gDeV~i~ 68 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTP----LKDGDVISLL 68 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCC----CCTTCEEEEE
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcC----CCCCCEEEEE
Confidence 445 56789999998887644432 678999999998755554 8999999876
No 121
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=90.90 E-value=1.5 Score=28.50 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=60.2
Q ss_pred CCcEEEEEEccCC---CEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEE-CCEecCCCCCccccCCcCCceeeeeecc
Q 034095 22 SAHINLKVKGQDG---NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPDEVILLFCAFCSCKYGR 97 (104)
Q Consensus 22 ~~~I~lkV~~~~g---~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~f-dG~rI~~~~TP~~L~Medgdii~~~~~~ 97 (104)
..+++.|+.-... -...+.|-..+||..+.+.-|+...+++.+--.+- ||.-|++.||+-..-|..|--.- ||-|
T Consensus 8 ~~kVtFkItltSdpklpfkvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLr-lIPR 86 (92)
T 1j0g_A 8 MSKVSFKITLTSDPRLPYKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELR-IIPR 86 (92)
T ss_dssp SCEEEEEEEETTSTTCCEEEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEE-EEEC
T ss_pred CceEEEEEEEccCCCCCceEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeE-eccc
Confidence 3577888764332 33477889999999999999999999887765555 79999999999988888776554 3444
Q ss_pred cccCc
Q 034095 98 LNTGH 102 (104)
Q Consensus 98 ~~~~~ 102 (104)
-..|.
T Consensus 87 DRVG~ 91 (92)
T 1j0g_A 87 DRVGS 91 (92)
T ss_dssp CSSCC
T ss_pred ccccC
Confidence 44443
No 122
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=88.71 E-value=0.78 Score=37.68 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=56.1
Q ss_pred cEEEEEEccCCCEE----EEEEeCCchHHHHHHHHHHHcCCccceEEEEEC------CEecC-CCCCcccc--CCcCCce
Q 034095 24 HINLKVKGQDGNEV----FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFD------GRRLR-GEQTPDEV--ILLFCAF 90 (104)
Q Consensus 24 ~I~lkV~~~~g~~v----~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fd------G~rI~-~~~TP~~L--~Medgdi 90 (104)
-|-||.-|.....+ ++-|++++++..|...-++++|++.++=--+|+ -+.|. .+.|-.+. ++.+|||
T Consensus 132 LlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdI 211 (530)
T 2ylm_A 132 MLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDI 211 (530)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEE
T ss_pred EEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCE
Confidence 45555557767676 578999999999999999999999976555554 45677 78999999 9999999
Q ss_pred eee
Q 034095 91 CSC 93 (104)
Q Consensus 91 i~~ 93 (104)
|-+
T Consensus 212 I~f 214 (530)
T 2ylm_A 212 IVF 214 (530)
T ss_dssp EEE
T ss_pred EEE
Confidence 854
No 123
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=88.06 E-value=1.2 Score=32.32 Aligned_cols=60 Identities=12% Similarity=0.000 Sum_probs=49.3
Q ss_pred CEEEEEEeCCchHHHHHHHHHHHcCCccc-eEEEEE-C----CEecCC-CCCccccCCcCCceeeee
Q 034095 35 NEVFFRIKRSTQLKKLMNAYCDRQSVELN-SIAFLF-D----GRRLRG-EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 35 ~~v~FkIK~tt~L~kLm~aY~~~~g~~~~-~lrF~f-d----G~rI~~-~~TP~~L~Medgdii~~~ 94 (104)
..+.+.+.+...++.|.+.-|+..+++.+ .+|++. . ...|.. ++|..++.+.+|+-|-+-
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE 206 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIE 206 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEE
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEE
Confidence 34578889999999999999999999986 799985 2 345555 579999999999987654
No 124
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=86.70 E-value=0.79 Score=37.63 Aligned_cols=37 Identities=11% Similarity=0.253 Sum_probs=33.3
Q ss_pred EEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEe
Q 034095 37 VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRR 73 (104)
Q Consensus 37 v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~r 73 (104)
..|||.+++++..|.+..|+..|++.+.+|||.=-.|
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~R 74 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQAR 74 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEEC
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcC
Confidence 4799999999999999999999999999999984333
No 125
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=84.41 E-value=2.3 Score=24.92 Aligned_cols=55 Identities=9% Similarity=0.030 Sum_probs=39.3
Q ss_pred CCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 33 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 33 ~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
+|.. +.+...+.+..|.+.. +++...+.+..||+-+...+ -.+--+.+||.|.++
T Consensus 6 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~~gD~v~i~ 60 (66)
T 1f0z_A 6 NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPREQ-WAQHIVQDGDQILLF 60 (66)
T ss_dssp SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHHH-HTTCCCCTTEEECEE
T ss_pred CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCchh-cCCcCCCCCCEEEEE
Confidence 5555 3456667888888764 67788899999999997421 112358999999876
No 126
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=84.11 E-value=1.7 Score=27.71 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=43.0
Q ss_pred CcEEEEEEccCCCEEEEEEeCC-chHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 23 AHINLKVKGQDGNEVFFRIKRS-TQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~t-t~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
..++|.| +|.. +.+... +.+..|.+.. +++...+.+..||+.|..++ -.+--+.|||.|.++
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~~-~~~~~L~dGD~Vei~ 81 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKER-YHEVELCDRDVIEIV 81 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGGG-TTTSBCCSSSEEEEE
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChhh-cCCcCCCCCCEEEEE
Confidence 3456666 5654 455666 7888888754 67788899999999997532 223459999999986
No 127
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=83.60 E-value=5.6 Score=24.25 Aligned_cols=55 Identities=11% Similarity=0.055 Sum_probs=41.4
Q ss_pred CEEEEEEeCCchHHHHHHHHHHHcC-Cc----------cceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 35 NEVFFRIKRSTQLKKLMNAYCDRQS-VE----------LNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 35 ~~v~FkIK~tt~L~kLm~aY~~~~g-~~----------~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
.+..+.+...+.++.|.+.-+.+.. +. ...+.+..||+.+.. +| -+.|||.|.++
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-~~----~l~~gDeV~i~ 83 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-GE----ATAAGDELALF 83 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-TS----BCCTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-Cc----ccCCCCEEEEE
Confidence 5667777777899999998887753 21 124889999999974 44 49999999876
No 128
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=82.28 E-value=7.7 Score=25.86 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=52.6
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHc-CCccceEEEEE--CCEecCC-CCCccccCCcCCceee
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQ-SVELNSIAFLF--DGRRLRG-EQTPDEVILLFCAFCS 92 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~-g~~~~~lrF~f--dG~rI~~-~~TP~~L~Medgdii~ 92 (104)
...+|.|+-.||..+.-+...+.+++.|++.-.... +.+...+.|+- =.+.+.+ ++|-++++|....+|-
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl~ 124 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIVQ 124 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEEE
Confidence 456778888899999999999999999998765543 34456677664 3555553 7899999999876653
No 129
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=80.59 E-value=4.2 Score=24.81 Aligned_cols=59 Identities=14% Similarity=0.231 Sum_probs=44.2
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
+|+|++-.. ....+.+...++++.|.+ +.|+++..+-+..||+-+..++ -+ +||.|.++
T Consensus 2 ~v~Vkl~g~--~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~-----~l-~GD~VeIv 60 (74)
T 2l32_A 2 NVTVEVVGE--ETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ-----SV-EVDRVKVL 60 (74)
T ss_dssp EEEEECSSS--SEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS-----SS-CCCCEEEC
T ss_pred EEEEEEeCc--cceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH-----CC-CCCEEEEE
Confidence 366666533 344678888888888775 5899999999999999887766 23 49998876
No 130
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=77.73 E-value=4 Score=24.17 Aligned_cols=53 Identities=4% Similarity=0.042 Sum_probs=38.4
Q ss_pred EEEEEEeCCchHHHHHHHHHHHcCCccceE--EEEECCEecCCCCCccccCCcCCceeeee
Q 034095 36 EVFFRIKRSTQLKKLMNAYCDRQSVELNSI--AFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 36 ~v~FkIK~tt~L~kLm~aY~~~~g~~~~~l--rF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
+..+.+...+.+..|.+....+.. .+..+ .+..||+.+..+ --+.|||.|.++
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ 71 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALI 71 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 445566667788899988776642 12334 899999999753 468999999886
No 131
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=74.28 E-value=3.3 Score=25.54 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=40.8
Q ss_pred CCCEEEEEEe--CCchHHHHHHHHHHHcCCc-cceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 33 DGNEVFFRIK--RSTQLKKLMNAYCDRQSVE-LNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 33 ~g~~v~FkIK--~tt~L~kLm~aY~~~~g~~-~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+|.. +.+. ..+.+..|.+. .+++ ...+-..+||+-|..+ .-++--+.|||.|.++.
T Consensus 6 NGe~--~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~ 64 (78)
T 2k5p_A 6 NGKP--STVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLY 64 (78)
T ss_dssp TTEE--EECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECC
T ss_pred CCEE--EEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEe
Confidence 4544 3445 56788888774 4777 7888899999988754 34455789999999874
No 132
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=74.23 E-value=13 Score=23.15 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=41.3
Q ss_pred CEEEEEEeCCchHHHHHHHHHHHcC-C----------ccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 35 NEVFFRIKRSTQLKKLMNAYCDRQS-V----------ELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 35 ~~v~FkIK~tt~L~kLm~aY~~~~g-~----------~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
.+..+.+...+.++.|.+.-+.+.. + ....+.+..||+.+.. +--+.+||.|.++
T Consensus 27 ~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGDeV~i~ 92 (98)
T 1vjk_A 27 DEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGDVVGVF 92 (98)
T ss_dssp SEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCCEEEEE
Confidence 4567778778899999998877642 1 1356889999998863 3458999999886
No 133
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=73.93 E-value=5.5 Score=23.68 Aligned_cols=53 Identities=6% Similarity=-0.105 Sum_probs=36.4
Q ss_pred EEEEEEeCCchHHHHHHHHHHHcC-----CccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 36 EVFFRIKRSTQLKKLMNAYCDRQS-----VELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 36 ~v~FkIK~tt~L~kLm~aY~~~~g-----~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
+..+. ...+.+..|.+.-+.+.. ++...+.+..||+.+. . +-.+.+||.|.++
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-~----~~~l~~gD~V~i~ 75 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-F----DHPLTDGDEVAFF 75 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-T----TCBCCTTCEEEEE
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-C----CCCCCCCCEEEEe
Confidence 44444 456688888888775532 2334578999999885 2 3468999999886
No 134
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=73.72 E-value=2.7 Score=27.45 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=40.5
Q ss_pred EEEEEeCCchHHHHHHHHHHH--cCCccceEEEEEC--CEecC--------------CCCCccccCCcCCceeee
Q 034095 37 VFFRIKRSTQLKKLMNAYCDR--QSVELNSIAFLFD--GRRLR--------------GEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 37 v~FkIK~tt~L~kLm~aY~~~--~g~~~~~lrF~fd--G~rI~--------------~~~TP~~L~Medgdii~~ 93 (104)
+.+.+.++..|+.+++..|++ ..+..-+++...+ |..+. =+.+-.+|+++||+.|-|
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~V 81 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAV 81 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEE
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEE
Confidence 357889999999999999996 4455555654432 23322 145568999999998876
No 135
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=73.68 E-value=4.8 Score=30.07 Aligned_cols=48 Identities=10% Similarity=0.105 Sum_probs=39.1
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc-ceEEEEE
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF 69 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~-~~lrF~f 69 (104)
...|.++|.-.||+.+.|.|..+++-+.|++.-|++.|+.. .-+-+.|
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 63 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAI 63 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEE
Confidence 35688999999999999999999999999999999999754 3344444
No 136
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=73.33 E-value=6.9 Score=22.67 Aligned_cols=54 Identities=19% Similarity=0.271 Sum_probs=38.5
Q ss_pred CCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 33 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 33 ~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
+|..+ .+ ..+.+..|.+.. +++...+.+..||+-+..++ =.+.-+.+||.|.++
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~~-~~~~~L~dgD~v~i~ 58 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGLE-VPDRPLRDGDVVEVV 58 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGGG-CCCCCCCTTCEEEEE
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCccc-cCCcCCCCCCEEEEE
Confidence 55553 34 567888887755 67788899999999987531 122358999999886
No 137
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=71.52 E-value=9.2 Score=29.17 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=40.6
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCc-cceEEEEE
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE-LNSIAFLF 69 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~-~~~lrF~f 69 (104)
..+.++|.-.||+...|.|..+++-+.|++.-|++.|+. ...|.+.+
T Consensus 84 ~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~ 131 (371)
T 3ivf_A 84 KQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 131 (371)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEEC
T ss_pred ceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEE
Confidence 468899999999999999999999999999999999964 35555555
No 138
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.45 E-value=17 Score=23.17 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=38.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc-ceEEEEE
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF 69 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~-~~lrF~f 69 (104)
+..|+||+.- +|..+.|++..+..|..|.+.-.++.+++. ..+...|
T Consensus 4 ~~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky 51 (89)
T 1vd2_A 4 GSQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW 51 (89)
T ss_dssp SSCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE
T ss_pred CCeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 4568888865 567889999999999999999999999765 4477777
No 139
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=70.24 E-value=9.9 Score=28.19 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=40.3
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc-ceEEEEE--CCEe
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF--DGRR 73 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~-~~lrF~f--dG~r 73 (104)
...+.++|.-.|| .+.|.|..+++-+.|++.-|++.|+.. .-|-+.| +|+.
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~ 73 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTV 73 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcC
Confidence 5678999999998 788999999999999999999999753 3344333 5554
No 140
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=67.18 E-value=12 Score=24.20 Aligned_cols=67 Identities=9% Similarity=0.081 Sum_probs=48.0
Q ss_pred CcEEEEEEc--cCC-CEEEEEEeCCchHHHHHHHHH--HH-cCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 23 AHINLKVKG--QDG-NEVFFRIKRSTQLKKLMNAYC--DR-QSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 23 ~~I~lkV~~--~~g-~~v~FkIK~tt~L~kLm~aY~--~~-~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
..|+|.|.- ++. ..+.+.+...+.+..+.++.. .+ -.++++.+.+..+|+.+. .+--+.|||.|.+.
T Consensus 11 ~~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~-----~d~~L~dGDRVEIy 83 (97)
T 2hj1_A 11 NQINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIK-----LTDVLKEGDRIEIY 83 (97)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCC-----TTCBCCTTCEEEEC
T ss_pred ceEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECC-----CCccCCCCCEEEEE
Confidence 356666653 232 234667888999999998874 23 367777888999999886 44449999999875
No 141
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=67.06 E-value=10 Score=25.75 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=46.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCc---------cceEEEEECCEecC
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE---------LNSIAFLFDGRRLR 75 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~---------~~~lrF~fdG~rI~ 75 (104)
.+.|..+|--.|.+.+..+++.++.-+.|+.+-+++.+.. +--+...+.|+|+-
T Consensus 7 ~Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~v 69 (120)
T 2dhz_A 7 GDEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVL 69 (120)
T ss_dssp CCCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEE
T ss_pred CCcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEee
Confidence 4688899999999999999999999999999999999863 55677788998875
No 142
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=66.63 E-value=9.8 Score=27.81 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=36.3
Q ss_pred EEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc-ceEEEEE
Q 034095 25 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF 69 (104)
Q Consensus 25 I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~-~~lrF~f 69 (104)
|.++|.-.|| .+.|.|..+|+-+.|++.-|++.|+.. .-|-+.|
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~ 46 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQY 46 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEE
Confidence 7788888888 678999999999999999999999754 3444444
No 143
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=66.16 E-value=4.6 Score=24.40 Aligned_cols=46 Identities=9% Similarity=0.114 Sum_probs=34.4
Q ss_pred EEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 40 RIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 40 kIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
.+...+.+..|.+. .+++...+.+..||+.+..+ --+.+||.|.++
T Consensus 26 ~~~~~~Tv~dLl~~----L~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ 71 (77)
T 1rws_A 26 EWREGMKVRDILRA----VGFNTESAIAKVNGKVVLED-----DEVKDGDFVEVI 71 (77)
T ss_dssp CCCSSCCHHHHHHT----TTCSSCSSCEEETTEEECSS-----SCCCSSCCCBCS
T ss_pred ECCCCCcHHHHHHH----hCCCCcCEEEEECCEECCCC-----CCcCCCCEEEEE
Confidence 44455677777654 45677888999999999754 469999999876
No 144
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=65.99 E-value=13 Score=25.28 Aligned_cols=38 Identities=18% Similarity=0.345 Sum_probs=34.8
Q ss_pred EEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccc
Q 034095 26 NLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELN 63 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~ 63 (104)
.|+|+=.||....+.|..+.+...++..-|++.|++..
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 58888889999999999999999999999999998743
No 145
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=65.06 E-value=8 Score=25.60 Aligned_cols=54 Identities=17% Similarity=0.219 Sum_probs=45.7
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCc---cceEEEEECCEecC
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE---LNSIAFLFDGRRLR 75 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~---~~~lrF~fdG~rI~ 75 (104)
.+.|..+|--.|.+.+..+++.+..-+.|+.+-+++.+.. +--+...+.|+|+-
T Consensus 7 sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~ 63 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHE 63 (104)
T ss_dssp SSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCB
T ss_pred CCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEee
Confidence 4577889999999999999999999999999999999863 45566677899875
No 146
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=64.72 E-value=20 Score=21.46 Aligned_cols=55 Identities=5% Similarity=0.019 Sum_probs=37.3
Q ss_pred EEEeCCchHHHHHHHHHHHcC------C-----ccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 39 FRIKRSTQLKKLMNAYCDRQS------V-----ELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 39 FkIK~tt~L~kLm~aY~~~~g------~-----~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
+.+...+.+..|.+.-+.+.. + -...+.+..||+.+...+ -.+--+.+||.|.++
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ 84 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLF 84 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEe
Confidence 345556788889988887742 1 015678999999887321 122348999999875
No 147
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=61.96 E-value=19 Score=21.99 Aligned_cols=51 Identities=6% Similarity=-0.001 Sum_probs=35.6
Q ss_pred CCchHHHHHHHHHHHcC-C-----c-------cceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 43 RSTQLKKLMNAYCDRQS-V-----E-------LNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 43 ~tt~L~kLm~aY~~~~g-~-----~-------~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
..+.+..|++.-+++.. + + ...+.+..||+.+...+-+ +--+.+||.|.++
T Consensus 24 ~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~ 87 (93)
T 3dwg_C 24 SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTIL 87 (93)
T ss_dssp CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEE
T ss_pred CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEE
Confidence 45688899888887753 1 1 1258999999999752222 2348999999875
No 148
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.88 E-value=27 Score=28.80 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=38.0
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc-ceEEEEE
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF 69 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~-~~lrF~f 69 (104)
..|.++|.-.|| .+.|.|..+|+-+.|++.-|++.|+.. .-|-+.|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~ 49 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQY 49 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEE
Confidence 468899999888 678999999999999999999999743 3455544
No 149
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Probab=58.95 E-value=2.4 Score=24.61 Aligned_cols=20 Identities=5% Similarity=-0.278 Sum_probs=16.3
Q ss_pred CCCccccCCcCCceeeeeec
Q 034095 77 EQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~~ 96 (104)
.+.+.+|.+.-||+|.|+--
T Consensus 21 ~~~~~eLsf~~Gd~i~v~~~ 40 (70)
T 1gcq_C 21 GAFGPFLRLNPGDIVELTKA 40 (70)
T ss_dssp GGCSCBCCBCTTCEEEEEEC
T ss_pred CCCCCcCCcCCCCEEEEEeC
Confidence 34567999999999999754
No 150
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=57.40 E-value=42 Score=26.93 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=41.6
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCc--cceEEEEE
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE--LNSIAFLF 69 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~--~~~lrF~f 69 (104)
...+.++|.-.||+...|.|..+++-+.|++.-|++.|+. .+.|-+++
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 3568899999999999999999999999999999999986 35666655
No 151
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=54.97 E-value=7.8 Score=23.45 Aligned_cols=55 Identities=13% Similarity=0.045 Sum_probs=40.2
Q ss_pred CCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 33 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 33 ~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
+|.. +.+ ..+.+..|.+ ..+++...+-..+||+-|..+ .-++--+.|||.|.++.
T Consensus 6 NG~~--~e~-~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~ 60 (73)
T 2kl0_A 6 NGEQ--REV-QSASVAALMT----ELDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILT 60 (73)
T ss_dssp TTEE--ECC-CCSBHHHHHH----HTTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEEC
T ss_pred CCEE--EEc-CCCcHHHHHH----HcCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEc
Confidence 4544 334 5677877776 568888889999999988643 33345789999999875
No 152
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=54.19 E-value=19 Score=23.45 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=31.3
Q ss_pred CcEEEEEEccC-------CCEEEEEEeCCchHHHHHHHHHHHcCCc
Q 034095 23 AHINLKVKGQD-------GNEVFFRIKRSTQLKKLMNAYCDRQSVE 61 (104)
Q Consensus 23 ~~I~lkV~~~~-------g~~v~FkIK~tt~L~kLm~aY~~~~g~~ 61 (104)
..|.|||.-++ +..+.+.|.++..|..|.+.-.++.+++
T Consensus 4 ~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 4 GSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 45888888553 3456889999999999999999998764
No 153
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=54.01 E-value=42 Score=21.76 Aligned_cols=74 Identities=12% Similarity=0.107 Sum_probs=45.7
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCc-hHHHHHHHHHHHc---C-----------C-----ccceEEEEECCEecCCCCC
Q 034095 20 DQSAHINLKVKGQDGNEVFFRIKRST-QLKKLMNAYCDRQ---S-----------V-----ELNSIAFLFDGRRLRGEQT 79 (104)
Q Consensus 20 ~~~~~I~lkV~~~~g~~v~FkIK~tt-~L~kLm~aY~~~~---g-----------~-----~~~~lrF~fdG~rI~~~~T 79 (104)
.+..+|+|.|.+.++....|.|.+.- .|..+|++=-.-. + + ...--.|.-||+.+. .-
T Consensus 4 ~g~k~i~i~v~~~~~~~~~~~v~t~g~tL~dvLk~~~~ve~e~s~~G~fITsI~G~~ad~~~~~yW~~~vng~~~~--~G 81 (101)
T 3u7z_A 4 EGEKHITVTVIHGDQTENVFEFDTDAKYLGEVLESENLVDGESGEYGLFITTVDEETADDSKQQWWCITKGGEQVN--TS 81 (101)
T ss_dssp -CCEEEEEEEECTTSCEEEEEEEECCSBHHHHHHHTTCEEEECCTTSCEEEEETTEECCGGGTEEEEEEETTEECC--SC
T ss_pred cceeEEEEEEEcCCCceeEEEEcCCccHHHHHHHHcCccccccccccceEEEEcCEecCCCCCCEEEEEECCEEhh--hc
Confidence 34678999999999999888888332 3544443211110 0 0 001123444666654 57
Q ss_pred ccccCCcCCceeeeee
Q 034095 80 PDEVILLFCAFCSCKY 95 (104)
Q Consensus 80 P~~L~Medgdii~~~~ 95 (104)
+.++-+.|||-|-+.+
T Consensus 82 a~~~~v~dGD~i~~~~ 97 (101)
T 3u7z_A 82 ADQTPVSDGDAFELTL 97 (101)
T ss_dssp GGGCBCCTTCEEEEEE
T ss_pred hhheEecCCCEEEEEE
Confidence 7889999999998765
No 154
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=52.83 E-value=32 Score=22.30 Aligned_cols=53 Identities=23% Similarity=0.218 Sum_probs=35.6
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeeccc
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYGRL 98 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~~~ 98 (104)
..++.|++-...| . ++|+ ..|..+..+ ||..|..+. +..|.+||+|.+++|..
T Consensus 42 R~h~~L~~~~~~g-~--v~vk--------------~lg~Np~~v----ng~~l~k~~---~~~L~~GD~l~Ll~~~~ 94 (102)
T 3kt9_A 42 RQQVQLKAECNKG-Y--VKVK--------------QVGVNPTSI----DSVVIGKDQ---EVKLQPGQVLHMVNELY 94 (102)
T ss_dssp SSCEEEEEETTTT-E--EEEE--------------ECSSSCCEE----TTEECCBTC---EEEECTTCCEEEETTEE
T ss_pred CcceEEEEecCCC-E--EEEE--------------ECcCCCCeE----CCEEcCCCC---eEEeCCCCEEEEccCCc
Confidence 4577777655444 3 3444 245555544 888888665 45699999999999874
No 155
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=52.28 E-value=40 Score=20.94 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=38.0
Q ss_pred CEEEEEEe--CCchHHHHHHHHHHHcC-Cc--c------c----eEEEEECCEecC---CCCCccccCCcCCceeeee
Q 034095 35 NEVFFRIK--RSTQLKKLMNAYCDRQS-VE--L------N----SIAFLFDGRRLR---GEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 35 ~~v~FkIK--~tt~L~kLm~aY~~~~g-~~--~------~----~lrF~fdG~rI~---~~~TP~~L~Medgdii~~~ 94 (104)
.++.+.+. ..+.++.|.+.-+++.. .. . . .+.++.||+.+. +.+| .+.|||.|.++
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~----~L~dgDeVa~~ 93 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDY----ILEDGDIISFT 93 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGC----BCCTTCEEEEE
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCc----CcCCCCEEEEE
Confidence 45555555 56788999988887763 11 1 2 345889999765 3444 48899999875
No 156
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=50.39 E-value=38 Score=21.43 Aligned_cols=61 Identities=10% Similarity=0.178 Sum_probs=42.4
Q ss_pred CCcEEEEEEccCC----CEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEE-CCEec-CCCCCccc
Q 034095 22 SAHINLKVKGQDG----NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRL-RGEQTPDE 82 (104)
Q Consensus 22 ~~~I~lkV~~~~g----~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~f-dG~rI-~~~~TP~~ 82 (104)
..+|+|+.+.... ..-.|.|..+.++..++..=.++..++++.--|+| |..-. ++++|-.+
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~ 69 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGT 69 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHH
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHH
Confidence 3577888876332 22389999999999999999999999877656666 65433 33455433
No 157
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=49.69 E-value=22 Score=22.97 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=43.2
Q ss_pred EEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCC
Q 034095 37 VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFC 88 (104)
Q Consensus 37 v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medg 88 (104)
+.-.|.-..||+.|-+.-..|.|++.+...|+.-+..+.++.+-.+-..+..
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqge 56 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTD 56 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCC
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccc
Confidence 3446777889999999999999999999999998888998888776665543
No 158
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=49.63 E-value=47 Score=21.05 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=39.9
Q ss_pred CCcEEEEEEccCC----CEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEec-CCCCCccc
Q 034095 22 SAHINLKVKGQDG----NEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL-RGEQTPDE 82 (104)
Q Consensus 22 ~~~I~lkV~~~~g----~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI-~~~~TP~~ 82 (104)
..+|+|+.+.... ..-.|+|..+.+++.++..=.++.++ +++=++.|..-. .+++|-.+
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~ 69 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGE 69 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHH
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHH
Confidence 3578888876433 22389999999999999999999988 566333476433 33445443
No 159
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=49.16 E-value=8.7 Score=22.57 Aligned_cols=27 Identities=22% Similarity=0.059 Sum_probs=19.9
Q ss_pred eEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 64 SIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 64 ~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
.+|-+||= ..+.|.+|.+.-||+|.|+
T Consensus 8 ~~~Alydy----~a~~~~ELs~~~Gd~i~v~ 34 (65)
T 2lj0_A 8 SYQALYSY----IPQNDDELELRDGDIVDVM 34 (65)
T ss_dssp EEEESSCB----CCSSTTBCCBCTTCEEEEE
T ss_pred EEEEceeE----CCCCcCCcCCCCCCEEEEe
Confidence 44445543 2467889999999999986
No 160
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=49.00 E-value=36 Score=22.08 Aligned_cols=62 Identities=8% Similarity=0.098 Sum_probs=42.9
Q ss_pred CCcEEEEEEccCCCE------EEEEEeCCchHHHHHHHHHHHcCCccceEEEEE-CCEecCCCCCcccc
Q 034095 22 SAHINLKVKGQDGNE------VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPDEV 83 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~------v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~f-dG~rI~~~~TP~~L 83 (104)
+++|-|.|.-..++. -.|.|..+.++..++..--++.+++++.--|+| ++.-...++|=.+|
T Consensus 25 p~~IPVive~~~~~~~p~l~k~KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 25 PDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp TTEEEEEEEECTTCCSCCCSCCEEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCceEEEEEecCCCCCCccceeEEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 367888887654331 378999999999999888888888876655666 55533334444443
No 161
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Probab=48.99 E-value=9 Score=21.54 Aligned_cols=18 Identities=17% Similarity=-0.012 Sum_probs=15.7
Q ss_pred CCCccccCCcCCceeeee
Q 034095 77 EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~ 94 (104)
.+.|.+|.+.-||+|.|+
T Consensus 14 ~~~~~eLs~~~Gd~i~v~ 31 (62)
T 2fpe_A 14 PRHEDELELEVDDPLLVE 31 (62)
T ss_dssp CSSTTBCCBCTTCEEEEE
T ss_pred ccCcCcCcCCCCCEEEEE
Confidence 356889999999999996
No 162
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=48.08 E-value=11 Score=20.59 Aligned_cols=29 Identities=3% Similarity=0.114 Sum_probs=23.7
Q ss_pred EEEEEEeCCchHHHHHHHHHHHcCCccce
Q 034095 36 EVFFRIKRSTQLKKLMNAYCDRQSVELNS 64 (104)
Q Consensus 36 ~v~FkIK~tt~L~kLm~aY~~~~g~~~~~ 64 (104)
...+.|+-+..+..-++.||+..|++.+.
T Consensus 9 ~~~i~vrl~~el~~~l~~~a~~~g~s~s~ 37 (55)
T 2k9i_A 9 GIKLGVYIPQEWHDRLMEIAKEKNLTLSD 37 (55)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHTCCHHH
T ss_pred cceEEEEcCHHHHHHHHHHHHHhCCCHHH
Confidence 34677778889999999999999987653
No 163
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=48.00 E-value=48 Score=21.96 Aligned_cols=51 Identities=8% Similarity=0.184 Sum_probs=39.0
Q ss_pred CCcEEEEEEccCCCE------EEEEEeCCchHHHHHHHHHHHcCCccceEEEEE-CCE
Q 034095 22 SAHINLKVKGQDGNE------VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGR 72 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~------v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~f-dG~ 72 (104)
+++|-|.|.-..++. -.|.|..+.++..++..--++..++++.--|+| |+.
T Consensus 28 P~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~ 85 (118)
T 3rui_B 28 KNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDT 85 (118)
T ss_dssp SSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTB
T ss_pred CCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCc
Confidence 457777776544433 279999999999999999999999887766666 664
No 164
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A
Probab=47.90 E-value=9.8 Score=22.43 Aligned_cols=18 Identities=11% Similarity=-0.097 Sum_probs=15.9
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.++-||+|.|+-
T Consensus 23 ~~~~eLs~~~Gd~i~v~~ 40 (73)
T 2ebp_A 23 YDTDSLKLKKGDIIDIIS 40 (73)
T ss_dssp TCCSBCCBCSSCEEEEEE
T ss_pred CCCCccCCCCCCEEEEEE
Confidence 578899999999999974
No 165
>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A
Probab=47.43 E-value=11 Score=21.43 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=16.0
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 18 ~~~~eLs~~~Gd~i~v~~ 35 (65)
T 2j05_A 18 PDTDEISFLKGDMFIVHN 35 (65)
T ss_dssp TTSSBCCBCTTCEEEEEE
T ss_pred CCCCcCcCCCCCEEEEeE
Confidence 678899999999999874
No 166
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=47.06 E-value=37 Score=28.43 Aligned_cols=48 Identities=23% Similarity=0.235 Sum_probs=40.6
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc-ceEEEEE
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF 69 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~-~~lrF~f 69 (104)
...|.++|.-.||....|.|...|.-+.|++.-|++.|+.. ..|.+.+
T Consensus 261 ~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 35789999999999999999999999999999999999643 4455544
No 167
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=46.88 E-value=32 Score=22.01 Aligned_cols=60 Identities=8% Similarity=0.204 Sum_probs=41.0
Q ss_pred CCcEEEEEEccCCC----EEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEe-cCCCCCcccc
Q 034095 22 SAHINLKVKGQDGN----EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRR-LRGEQTPDEV 83 (104)
Q Consensus 22 ~~~I~lkV~~~~g~----~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~r-I~~~~TP~~L 83 (104)
.++|+|+++..... .-.|.|..+.++..++..-.++..++ ++=++.|... ...++|=.+|
T Consensus 11 ~~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~l~--alFlyvn~~~~Ps~d~~m~~L 75 (96)
T 1wz3_A 11 VQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSD--SLFVYVNSAFSPNPDESVIDL 75 (96)
T ss_dssp -CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHTCS--SCEEEEEEEECCCTTSBHHHH
T ss_pred CCeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcCCc--eEEEEECCcccCChhhHHHHH
Confidence 56888888765332 23899999999999999999999887 4434334423 3345565555
No 168
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=46.72 E-value=64 Score=21.74 Aligned_cols=62 Identities=18% Similarity=0.310 Sum_probs=45.9
Q ss_pred CCcEEEEEEccCCCE-------EEEEEeCCchHHHHHHHHHHHcCCccceEEEE-ECCEec-CCCCCcccc
Q 034095 22 SAHINLKVKGQDGNE-------VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFL-FDGRRL-RGEQTPDEV 83 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~-------v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~-fdG~rI-~~~~TP~~L 83 (104)
+++|-|.|.-..++. -.|.|..+.++..++..--++.+++++.--|+ |-+..+ ..++|=.+|
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~l 103 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEV 103 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHH
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHH
Confidence 467888886444333 37999999999999999999999999888888 754444 345555555
No 169
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}
Probab=46.44 E-value=11 Score=20.54 Aligned_cols=19 Identities=16% Similarity=0.015 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 11 ~~~~~eLs~~~Gd~i~v~~ 29 (54)
T 2a28_A 11 AQGDDEISIDPGDIITVIR 29 (54)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred cCCCCCccCCCCCEEEEEE
Confidence 3567899999999999875
No 170
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A
Probab=46.18 E-value=13 Score=20.37 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=16.3
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~ 30 (58)
T 1zuy_A 12 SGSPSELPLKKGDVIYITR 30 (58)
T ss_dssp CSCTTBCCBCTTCEEEEEE
T ss_pred CCCCCcCCCCCCCEEEEEE
Confidence 4578899999999999874
No 171
>2npt_A Dual specificity mitogen-activated protein kinase; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_A 1wi0_A
Probab=45.65 E-value=62 Score=21.28 Aligned_cols=59 Identities=7% Similarity=0.022 Sum_probs=43.8
Q ss_pred CCCcEEEEEEccCCCEEEEEEe--CCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 21 QSAHINLKVKGQDGNEVFFRIK--RSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~~v~FkIK--~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
++..|.|+++-++|..+--.|. ..-.|+.|.++-.+-+-- ..-|+-+.+=|+||.|-|-
T Consensus 11 ~a~~lVIRIk~p~~g~vDwaV~~~~~L~FrDvL~~I~~vmP~---------------aT~TAFeYEDE~gDRITVR 71 (106)
T 2npt_A 11 ENQVLVIRIKIPNSGAVDWTVHSGPQLLFRDVLDVIGQVLPE---------------ATTTAFEYEDEDGDRITVR 71 (106)
T ss_dssp --CCEEEEEEETTTEEEEEEECC--CCCHHHHHHHHHHHSTT---------------SCCSEEEEECTTSCEEEEC
T ss_pred ccCceEEEEECCCCCccccccCCcccccHHHHHHHHHHhCcc---------------ceeeeeeeccccCCeeEEc
Confidence 3567889999999989988887 566889999888776632 2456677777889988873
No 172
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=44.94 E-value=51 Score=20.09 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=38.4
Q ss_pred EEEEEccCCCEEEEEEeCC-chHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeecc
Q 034095 26 NLKVKGQDGNEVFFRIKRS-TQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYGR 97 (104)
Q Consensus 26 ~lkV~~~~g~~v~FkIK~t-t~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~~ 97 (104)
.|.|..++|+.+. +... |++. + ||+=..++....+--.+||+.+.-+ -.+++||+|.++-..
T Consensus 7 ~i~v~tP~G~~~~--lp~GaT~~D-~--A~~Ih~~lg~~~v~AkVNG~~v~L~-----~~L~~gd~VeIit~~ 69 (78)
T 3hvz_A 7 EVFVFTPKGDVIS--LPIGSTVID-F--AYAIHSAVGNRMIGAKVDGRIVPID-----YKVKTGEIIDVLTTK 69 (78)
T ss_dssp EEEEECTTSCEEE--EETTCBHHH-H--HHHHCHHHHHTEEEEEETTEEECTT-----CBCCTTCBEEEEECC
T ss_pred eEEEECCCCCEEE--ecCCCCHHH-H--HHHhhhhhhcceEEEEECCEEcCCC-----cccCCCCEEEEEccC
Confidence 4677788898754 4444 4444 2 2332333334455566788887653 358999999987643
No 173
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=44.71 E-value=59 Score=20.75 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=39.5
Q ss_pred CcEEEEEEccCCCEEEEEEeC--CchHHHHHHHHHHHcCCccceEEEEE---CCEecC
Q 034095 23 AHINLKVKGQDGNEVFFRIKR--STQLKKLMNAYCDRQSVELNSIAFLF---DGRRLR 75 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~--tt~L~kLm~aY~~~~g~~~~~lrF~f---dG~rI~ 75 (104)
..++|+|.- .|+...|.|.- ++.+..|....+...|++ ++++.| ||..|+
T Consensus 5 ~~v~lkV~f-~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY~DEenD~v~ 59 (87)
T 2bkf_A 5 PQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVS 59 (87)
T ss_dssp CCEEEEEEE-TTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEEECTTSCEEE
T ss_pred ceEEEEEEE-cCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEEEcCCCCEEE
Confidence 357888855 77777899965 999999999999999986 777777 565554
No 174
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=43.63 E-value=59 Score=21.58 Aligned_cols=61 Identities=10% Similarity=0.206 Sum_probs=43.5
Q ss_pred CCcEEEEEEccCCCE------EEEEEeCCchHHHHHHHHHHHcCCccceEEEEE-CCEecCCCCCccc
Q 034095 22 SAHINLKVKGQDGNE------VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPDE 82 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~------v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~f-dG~rI~~~~TP~~ 82 (104)
+++|-|.|.-..++. -.|.|..+.++..++..--++..++++.--|+| |+.-...+.|=.+
T Consensus 29 P~rIPVIvEr~~~~~~P~Ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~ 96 (119)
T 3h9d_A 29 PDRLPIICEKVYNSDIGELDRCKFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMAD 96 (119)
T ss_dssp TTEEEEEEEECTTSSCCCCSSCEEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHH
T ss_pred CCeEEEEEEecCCCCCCccCcceEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHH
Confidence 356777776544332 279999999999999999999999887766666 8774444555433
No 175
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1
Probab=42.89 E-value=13 Score=21.10 Aligned_cols=17 Identities=18% Similarity=0.075 Sum_probs=15.0
Q ss_pred CccccCCcCCceeeeee
Q 034095 79 TPDEVILLFCAFCSCKY 95 (104)
Q Consensus 79 TP~~L~Medgdii~~~~ 95 (104)
+|.+|.+.-||+|.|+-
T Consensus 2 ~~~eLs~~~Gd~i~v~~ 18 (63)
T 1tuc_A 2 GPREVTMKKGDILTLLN 18 (63)
T ss_dssp CCCCCCBCTTCEEEEEE
T ss_pred CccccCCCCCCEEEEEE
Confidence 68899999999999974
No 176
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Probab=42.55 E-value=13 Score=20.44 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=16.3
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 13 ~~~~~eLs~~~Gd~i~v~~ 31 (60)
T 2v1q_A 13 AESQDELTIKSGDKVYILD 31 (60)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCCCCccCCCCCEEEEEe
Confidence 3578899999999999975
No 177
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1
Probab=41.49 E-value=21 Score=20.48 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=20.7
Q ss_pred ceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 63 NSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 63 ~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
..++-+||- ..+.+.+|.+.-||+|.|+-
T Consensus 6 ~~~~al~dy----~~~~~~eLs~~~Gd~i~v~~ 34 (73)
T 3thk_A 6 ELVLALYDY----QEKSPREVTMKKGDILTLLN 34 (73)
T ss_dssp CEEEECSCB----CCCSTTBCCBCTTCEEEEEE
T ss_pred EEEEECcCC----CcCCCCccCCCCCCEEEEEE
Confidence 344555553 24578899999999999874
No 178
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Probab=41.17 E-value=15 Score=20.30 Aligned_cols=18 Identities=6% Similarity=-0.164 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 12 ~~~~eLs~~~Gd~i~v~~ 29 (58)
T 1jo8_A 12 AEDNELTFVENDKIINIE 29 (58)
T ss_dssp CSTTBCCBCTTCEEEEEE
T ss_pred CCCCCcccCCCCEEEEEE
Confidence 467899999999999864
No 179
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A
Probab=41.16 E-value=14 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.202 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 32 a~~~~eLsf~~Gd~i~v~~ 50 (62)
T 1g2b_A 32 EKSPREVTMKKGDILTLLN 50 (62)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred CCCCCccCCCCCCEEEEEE
Confidence 3567899999999999974
No 180
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}
Probab=40.83 E-value=14 Score=21.36 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~ 30 (65)
T 2fei_A 12 PQNEDELELKVGDIIDINE 30 (65)
T ss_dssp CCSTTBCCCCTTCEEECCC
T ss_pred cCCcCccCCCCCCEEEEEE
Confidence 3568899999999999863
No 181
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A
Probab=40.65 E-value=15 Score=20.25 Aligned_cols=19 Identities=11% Similarity=-0.207 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 13 ~~~~~eLs~~~Gd~i~v~~ 31 (58)
T 1zx6_A 13 PQQDGDLGLKPGDKVQLLE 31 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCCCCccCCCCCEEEEEE
Confidence 3568899999999999974
No 182
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Probab=40.61 E-value=15 Score=20.24 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 13 ~~~~eLs~~~Gd~i~v~~ 30 (58)
T 2bz8_A 13 QHDDELTISVGEIITNIR 30 (58)
T ss_dssp CSTTBCCBCTTCEEEEEE
T ss_pred CCcCEeeECCCCEEEEEE
Confidence 568899999999999874
No 183
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.55 E-value=15 Score=21.07 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (68)
T 2dmo_A 18 PETKEELQVMPGNIVFVLK 36 (68)
T ss_dssp CCSSSSCCCCTTCEEEECE
T ss_pred cCCcCCCCCCCCCEEEEEE
Confidence 3567899999999999973
No 184
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=40.53 E-value=14 Score=21.38 Aligned_cols=17 Identities=0% Similarity=-0.058 Sum_probs=13.8
Q ss_pred CCccc-cCCcCCceeeee
Q 034095 78 QTPDE-VILLFCAFCSCK 94 (104)
Q Consensus 78 ~TP~~-L~Medgdii~~~ 94 (104)
+.|.+ |.+.-||+|.|+
T Consensus 15 ~~~~e~Ls~~~Gd~i~v~ 32 (60)
T 2lx7_A 15 ERHGQGLRFAAGELITLL 32 (60)
T ss_dssp CCCSSCCCCCTTCEEEBS
T ss_pred CCCCCCccCCCCCEEEEe
Confidence 34555 999999999986
No 185
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Probab=40.51 E-value=15 Score=21.03 Aligned_cols=18 Identities=6% Similarity=-0.165 Sum_probs=15.6
Q ss_pred CCCccccCCcCCceeeee
Q 034095 77 EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~ 94 (104)
.+.+.+|.+.-||+|.|+
T Consensus 18 ~~~~~eLsf~~Gd~i~v~ 35 (68)
T 1tg0_A 18 SDYEDDLNFEKDQEIIVT 35 (68)
T ss_dssp CSCTTBCCBCTTCEEEEE
T ss_pred cCCcCCCCCCCCCEEEEE
Confidence 356889999999999987
No 186
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A
Probab=40.47 E-value=15 Score=20.17 Aligned_cols=18 Identities=11% Similarity=-0.112 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 13 ~~~~eLs~~~Gd~i~v~~ 30 (58)
T 1uti_A 13 LEEDELGFRSGEVVEVLD 30 (58)
T ss_dssp CSTTBCCBCTTCEEEEEE
T ss_pred CCcCCCCCCCCCEEEEEE
Confidence 457899999999999974
No 187
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}
Probab=40.23 E-value=15 Score=20.10 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=15.3
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 13 ~~~~eLs~~~Gd~i~v~~ 30 (59)
T 1yn8_A 13 ENDNELRLAEGDIVFISY 30 (59)
T ss_dssp CSTTBCCBCTTCEEEEEE
T ss_pred CCCCCcCCCCCCEEEEEE
Confidence 467899999999999853
No 188
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Probab=39.73 E-value=15 Score=21.06 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~ 30 (65)
T 2nwm_A 12 AQSPKELTLQKGDIVYIHK 30 (65)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCcCccCCcCCCEEEEEE
Confidence 3568899999999999963
No 189
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A
Probab=39.33 E-value=16 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.095 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~ 32 (61)
T 1y0m_A 14 AQREDELTFTKSAIIQNVE 32 (61)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred cCCCCCcCCcCCCEEEEEE
Confidence 3567899999999999864
No 190
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Probab=39.31 E-value=16 Score=20.37 Aligned_cols=19 Identities=5% Similarity=-0.253 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 15 ~~~~~eLs~~~Gd~i~v~~ 33 (60)
T 1w70_A 15 GNSKLELNFKAGDVIFLLS 33 (60)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred cCCCCCccCCCCCEEEEEE
Confidence 3567899999999999974
No 191
>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.26 E-value=17 Score=21.48 Aligned_cols=18 Identities=22% Similarity=0.134 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.++-||+|.|+-
T Consensus 29 ~~~~eLs~~~Gd~i~v~~ 46 (79)
T 1x6b_A 29 KQADEVTLQQADVVLVLQ 46 (79)
T ss_dssp CSSSBCCCCTTEEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEE
Confidence 567899999999999974
No 192
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}
Probab=38.92 E-value=16 Score=20.32 Aligned_cols=18 Identities=11% Similarity=-0.156 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 18 ~~~~eLs~~~Gd~i~v~~ 35 (60)
T 2gnc_A 18 RSARELSFKKGASLLLYH 35 (60)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEE
Confidence 467899999999999874
No 193
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}
Probab=38.89 E-value=16 Score=20.10 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 15 ~~~~eLs~~~Gd~i~v~~ 32 (58)
T 1zlm_A 15 RTPDELYFEEGDIIYITD 32 (58)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCCccCCCCCEEEEEE
Confidence 457899999999999974
No 194
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A
Probab=38.83 E-value=16 Score=20.46 Aligned_cols=18 Identities=11% Similarity=-0.001 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 13 ~~~~eLs~~~Gd~i~v~~ 30 (62)
T 2j6f_A 13 VHDDELTIRVGEIIRNVK 30 (62)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCcCCcCCcCCCEEEEEE
Confidence 467899999999999874
No 195
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}
Probab=38.60 E-value=17 Score=20.75 Aligned_cols=17 Identities=6% Similarity=-0.001 Sum_probs=14.9
Q ss_pred CccccCCcCCceeeeee
Q 034095 79 TPDEVILLFCAFCSCKY 95 (104)
Q Consensus 79 TP~~L~Medgdii~~~~ 95 (104)
.+.+|.+.-||+|.|+-
T Consensus 21 ~~~eLs~~~Gd~i~v~~ 37 (67)
T 2eyx_A 21 DKTALALEVGELVKVTK 37 (67)
T ss_dssp CSSBCCBCSSEEEEEEE
T ss_pred CCCccccCCCCEEEEEE
Confidence 67799999999999874
No 196
>2gw6_A TRNA-splicing endonuclease subunit SEN15; SEN15_human, tRNA endonuclease, structural genomics, PSI, protein structure initiative; NMR {Homo sapiens} SCOP: c.52.2.1
Probab=38.53 E-value=36 Score=22.71 Aligned_cols=22 Identities=14% Similarity=0.394 Sum_probs=19.4
Q ss_pred CCCcEEEEEEccCCCEEEEEEe
Q 034095 21 QSAHINLKVKGQDGNEVFFRIK 42 (104)
Q Consensus 21 ~~~~I~lkV~~~~g~~v~FkIK 42 (104)
...+|+|-+.++|++.|+|+|.
T Consensus 101 ~~~ri~LaIv~~DSTIVYY~v~ 122 (123)
T 2gw6_A 101 LPMSFTLAIVESDSTIVYYKLT 122 (123)
T ss_dssp CCCEEEEEEECTTSCEEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEEe
Confidence 3569999999999999999984
No 197
>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.48 E-value=12 Score=21.70 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=15.7
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 20 ~~~~eLsf~~Gd~i~v~~ 37 (71)
T 2gqi_A 20 PDTDEISFLKGDMFIVHN 37 (71)
T ss_dssp TTSSCCCCCTTCBCCCCE
T ss_pred CCCCCCCCCCCCEEEEEE
Confidence 568899999999999863
No 198
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A
Probab=38.38 E-value=17 Score=20.44 Aligned_cols=19 Identities=11% Similarity=-0.053 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~ 35 (64)
T 2jte_A 17 GTNEDELTFREGEIIHLIS 35 (64)
T ss_dssp CSSSSBCCBCTTCEEEEEE
T ss_pred ccCCCccCCCCCCEEEEEE
Confidence 3567899999999999974
No 199
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.27 E-value=19 Score=20.51 Aligned_cols=19 Identities=5% Similarity=-0.164 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (68)
T 1x2p_A 18 ATDETQLSFLRGEKILILR 36 (68)
T ss_dssp CSSTTBCCCCTTCEEEEEE
T ss_pred CCCcCCcCCCCCCEEEEEE
Confidence 3567899999999999974
No 200
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=38.19 E-value=15 Score=20.14 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~ 30 (58)
T 1zuu_A 12 QKDDDEITITPGDKISLVA 30 (58)
T ss_dssp CCSTTBCCBCTTCCEEEEE
T ss_pred CcCCCcccCCCCCEEEEeE
Confidence 3567899999999999974
No 201
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.16 E-value=17 Score=20.86 Aligned_cols=19 Identities=11% Similarity=0.027 Sum_probs=16.2
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (68)
T 1wxb_A 18 ARNANELSVLKDEVLEVLE 36 (68)
T ss_dssp CSSSSBCCBCTTCEEEEEE
T ss_pred CCCCCccCCCCCCEEEEEE
Confidence 3578899999999999974
No 202
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}
Probab=38.09 E-value=17 Score=20.17 Aligned_cols=18 Identities=17% Similarity=0.017 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 17 ~~~~eLs~~~Gd~i~v~~ 34 (60)
T 2xmf_A 17 QDTDELSFNANDIIDIIK 34 (60)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEE
Confidence 467899999999999874
No 203
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}
Probab=37.97 E-value=15 Score=20.88 Aligned_cols=18 Identities=0% Similarity=-0.193 Sum_probs=15.8
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~~eLs~~~Gd~i~v~~ 36 (67)
T 2kxc_A 19 SNKTLLSFAQGDVITLLI 36 (67)
T ss_dssp SCSSBCCBCTTCEEEESS
T ss_pred CCCCCCcCCCCCEEEEeE
Confidence 567899999999999974
No 204
>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Probab=37.80 E-value=18 Score=19.81 Aligned_cols=19 Identities=16% Similarity=-0.029 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 13 ~~~~~eLs~~~Gd~i~v~~ 31 (58)
T 2vwf_A 13 PQEDGELGFRRGDFIHVMD 31 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCcCCcCCCCCCEEEEEE
Confidence 3567899999999999974
No 205
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A
Probab=37.69 E-value=18 Score=20.02 Aligned_cols=18 Identities=0% Similarity=-0.119 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 15 ~~~~eLs~~~Gd~i~v~~ 32 (60)
T 1oot_A 15 EESGDLPFRKGDVITILK 32 (60)
T ss_dssp CSTTBCCBCTTCEEEEEE
T ss_pred CCcCEeeEcCCCEEEEEE
Confidence 467899999999999974
No 206
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=37.50 E-value=18 Score=20.19 Aligned_cols=18 Identities=6% Similarity=0.004 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
..+.+|.+.-||+|.|+-
T Consensus 17 ~~~~eLs~~~Gd~i~v~~ 34 (62)
T 1k4u_S 17 TQPEDLEFQEGDIILVLS 34 (62)
T ss_dssp CSSSBCCBCSSCEEEEEE
T ss_pred CCCCCccCCCCCEEEEEE
Confidence 467799999999999974
No 207
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1
Probab=37.46 E-value=16 Score=21.06 Aligned_cols=18 Identities=0% Similarity=-0.191 Sum_probs=15.7
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 20 ~~~~eLs~~~Gd~i~v~~ 37 (72)
T 1spk_A 20 NNKTLLSFAQGDVLTLLI 37 (72)
T ss_dssp SCSSBCCBCTTCEEEECC
T ss_pred CCCCCCcCCCCCEEEEeE
Confidence 567899999999999973
No 208
>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A
Probab=37.45 E-value=17 Score=22.29 Aligned_cols=28 Identities=18% Similarity=0.180 Sum_probs=20.7
Q ss_pred ceEEEEECCEecCCCCCccccCCcCCceeeee
Q 034095 63 NSIAFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 63 ~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
..++-+|+-. .+.+.+|.+.-||+|.|+
T Consensus 12 ~~~~Alydy~----a~~~~ELsf~~GD~I~V~ 39 (90)
T 3o5z_A 12 FQYRALYPFR----RERPEDLELLPGDVLVVS 39 (90)
T ss_dssp EEEEECSCBC----CCSTTBCCBCTTCEEEEE
T ss_pred cEEEEeeeEC----CCCCCccCCcCCCEEEEE
Confidence 3455555533 257899999999999997
No 209
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A
Probab=37.35 E-value=18 Score=21.11 Aligned_cols=19 Identities=16% Similarity=0.073 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 13 a~~~~eLs~~~Gd~i~vl~ 31 (69)
T 2ydl_A 13 AQNDDELTIKEGDIVTLIN 31 (69)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCCCccccCCCCEEEEEE
Confidence 3567899999999999974
No 210
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A
Probab=37.34 E-value=18 Score=19.81 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 14 ~~~~eLs~~~Gd~i~v~~ 31 (58)
T 1sem_A 14 QESGELAFKRGDVITLIN 31 (58)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCCcCCCCCCEEEEEE
Confidence 467899999999999875
No 211
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.17 E-value=21 Score=20.38 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~~eLs~~~Gd~i~v~~ 36 (68)
T 1x2k_A 19 RTPDELYFEEGDIIYITD 36 (68)
T ss_dssp CSTTBCCCCSSCEEEEEE
T ss_pred CCCCcccCCCCCEEEEEE
Confidence 457899999999999974
No 212
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.15 E-value=16 Score=20.93 Aligned_cols=19 Identities=16% Similarity=0.018 Sum_probs=16.2
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.++-||+|.|+-
T Consensus 19 ~~~~~eLs~~~Gd~i~v~~ 37 (70)
T 2ega_A 19 KQENSELSLQAGEVVDVIE 37 (70)
T ss_dssp CCSSSSCCCCTTCBCEEEE
T ss_pred CCCCCcccCCCCCEEEEEE
Confidence 3578899999999999974
No 213
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=36.88 E-value=18 Score=19.74 Aligned_cols=18 Identities=0% Similarity=-0.049 Sum_probs=15.3
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 13 ~~~~eLs~~~Gd~i~v~~ 30 (57)
T 1cka_A 13 NDEEDLPFKKGDILRIRD 30 (57)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCCCCCCCCCEEEEEE
Confidence 457799999999999874
No 214
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Probab=36.78 E-value=17 Score=20.08 Aligned_cols=18 Identities=17% Similarity=-0.123 Sum_probs=15.4
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 15 ~~~~eLs~~~Gd~i~v~~ 32 (60)
T 2x3w_D 15 QEQDELSFKAGDELTKLG 32 (60)
T ss_dssp SSSSBCCBCTTCEEEECS
T ss_pred cCCCcccCCCCCEEEEEE
Confidence 467899999999999864
No 215
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=36.77 E-value=20 Score=21.03 Aligned_cols=19 Identities=5% Similarity=-0.099 Sum_probs=16.3
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (80)
T 1ue9_A 18 ASGSEQLSLAPGQLILILK 36 (80)
T ss_dssp CCSTTBCCCCTTCEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEE
Confidence 3578899999999999974
No 216
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Probab=36.77 E-value=18 Score=19.95 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 16 ~~~~eLs~~~Gd~i~v~~ 33 (59)
T 2g6f_X 16 TNEDELSFSKGDVIHVTR 33 (59)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEE
Confidence 467899999999999874
No 217
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.77 E-value=20 Score=20.52 Aligned_cols=19 Identities=16% Similarity=0.073 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (70)
T 2da9_A 18 AQNDDELTIKEGDIVTLIN 36 (70)
T ss_dssp CSSTTBCCCCTTEEEEEEE
T ss_pred CCCcCEeeEcCCCEEEEEE
Confidence 3567899999999999974
No 218
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.73 E-value=17 Score=20.67 Aligned_cols=19 Identities=21% Similarity=-0.008 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (70)
T 2ct3_A 18 PQNEDELELREGDRVDVMQ 36 (70)
T ss_dssp CSSTTBCCBCTTEEEEEEE
T ss_pred cCCcCCccCCCCCEEEEEE
Confidence 3567899999999999964
No 219
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A
Probab=36.72 E-value=19 Score=19.69 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=15.8
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~ 32 (58)
T 2drm_A 14 AQTGDELTFKEGDTIIVHQ 32 (58)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCcCCcCCCCCCEEEEEE
Confidence 3467899999999999864
No 220
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A
Probab=36.51 E-value=19 Score=20.09 Aligned_cols=19 Identities=0% Similarity=-0.303 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~ 35 (62)
T 2iim_A 17 PSHDGDLGFEKGEQLRILE 35 (62)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCCCCcCCCCCCEEEEEE
Confidence 3567899999999999975
No 221
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A
Probab=36.47 E-value=19 Score=20.67 Aligned_cols=19 Identities=5% Similarity=-0.085 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~~~eLs~~~Gd~i~v~~ 37 (68)
T 2k2m_A 19 ARNSSELSVKQRDVLEVLD 37 (68)
T ss_dssp CCSSSBCCBCTTCEEEEEE
T ss_pred CCCCCcccCCCCCEEEEEE
Confidence 3567899999999999974
No 222
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}
Probab=36.47 E-value=19 Score=20.89 Aligned_cols=19 Identities=5% Similarity=-0.088 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 14 ~~~~~eLsf~~Gd~i~v~~ 32 (68)
T 2ew3_A 14 PENQGELGFKEGDIITLTN 32 (68)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCCCccCCCCCCEEEEEE
Confidence 3567899999999999875
No 223
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=36.39 E-value=60 Score=18.40 Aligned_cols=60 Identities=8% Similarity=-0.021 Sum_probs=36.1
Q ss_pred EEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 27 LKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 27 lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
++|.-++|.. +.+...+.+..|...+... +....+--.+||+.+.-+ -.+++||.|.++-
T Consensus 3 i~i~~p~g~~--~~~~~g~T~~dla~~i~~~--l~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 3 VMVFTPKGEI--KRLPQGATALDFAYSLHSD--LGDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp EEEECTTCCE--EEECTTCBHHHHHHHHCSH--HHHTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred EEEEcCCCCE--EEcCCCCcHHHHHHHHhhc--cccceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 4555567776 4555667776666554222 223455556788876553 4566888887764
No 224
>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A
Probab=36.34 E-value=18 Score=21.52 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeee
Q 034095 77 EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~ 94 (104)
.+.|.+|.+.-||+|.|+
T Consensus 16 ~~~~~eLs~~~Gd~I~V~ 33 (83)
T 3i5r_A 16 KEREEDIDLHLGDILTVN 33 (83)
T ss_dssp CCSTTBCCBCTTCEEEEE
T ss_pred CCCCCccccCCCCEEEEe
Confidence 357899999999999998
No 225
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1
Probab=36.25 E-value=19 Score=20.12 Aligned_cols=18 Identities=6% Similarity=0.003 Sum_probs=15.4
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 17 ~~~~eLs~~~Gd~i~v~~ 34 (62)
T 1uj0_A 17 VEDNELTFKHGELITVLD 34 (62)
T ss_dssp CSTTBCCBCTTCEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEE
Confidence 457799999999999974
No 226
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=36.16 E-value=15 Score=20.98 Aligned_cols=17 Identities=6% Similarity=-0.021 Sum_probs=14.9
Q ss_pred CccccCCcCCceeeeee
Q 034095 79 TPDEVILLFCAFCSCKY 95 (104)
Q Consensus 79 TP~~L~Medgdii~~~~ 95 (104)
.+.+|.+.-||+|.|+-
T Consensus 16 ~~~eLsf~~Gd~i~v~~ 32 (67)
T 2bzy_A 16 DKTALALEVGDIVKVTR 32 (67)
T ss_dssp CTTBCCBCTTCEEEEEE
T ss_pred CCCccccCCCCEEEEEE
Confidence 67899999999999864
No 227
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A
Probab=36.12 E-value=18 Score=21.14 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 21 ~~~~~eLsf~~Gd~i~v~~ 39 (76)
T 2ed1_A 21 ADNDDELTFIEGEVIIVTG 39 (76)
T ss_dssp CSSSSBCCCCSSCEEEESS
T ss_pred CCCcCCcCcCCCCEEEEEE
Confidence 3567899999999999963
No 228
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}
Probab=36.10 E-value=18 Score=20.69 Aligned_cols=18 Identities=11% Similarity=-0.182 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~~eLs~~~Gd~i~v~~ 36 (70)
T 2ecz_A 19 DTQVEMSFRKGERITLLR 36 (70)
T ss_dssp CSTTBCCCCTTCBCEEEE
T ss_pred CCcCCcCCCCCCEEEEEE
Confidence 467899999999999974
No 229
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Probab=36.03 E-value=22 Score=20.23 Aligned_cols=19 Identities=11% Similarity=-0.066 Sum_probs=16.4
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~ 32 (69)
T 1ruw_A 14 SGSSSELPLKKGDIVFISR 32 (69)
T ss_dssp CSCTTBCCBCTTCEEEEEE
T ss_pred CCCCCcccCCCCCEEEEEE
Confidence 4578999999999999874
No 230
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.91 E-value=19 Score=21.81 Aligned_cols=18 Identities=6% Similarity=-0.051 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 30 ~~~~eLsf~~Gd~i~v~~ 47 (88)
T 2dbk_A 30 YDKTALALEVGDIVKVTR 47 (88)
T ss_dssp TCSSBCCBCTTCEEEEEE
T ss_pred CCCCcccCCCCCEEEEEE
Confidence 468899999999999874
No 231
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}
Probab=35.68 E-value=19 Score=20.73 Aligned_cols=17 Identities=18% Similarity=-0.003 Sum_probs=15.1
Q ss_pred CCccccCCcCCceeeee
Q 034095 78 QTPDEVILLFCAFCSCK 94 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~ 94 (104)
+.+.+|.+.-||+|.|+
T Consensus 18 ~~~~eLs~~~Gd~i~v~ 34 (71)
T 2fpf_A 18 RHEDELELEVDDPLLVE 34 (71)
T ss_dssp SSTTBCCBCTTCEEEEE
T ss_pred cCCCcccCcCCcEEEEe
Confidence 56789999999999996
No 232
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine kinase, signal transduction; NMR {Homo sapiens} PDB: 1wa7_A
Probab=35.47 E-value=20 Score=20.13 Aligned_cols=19 Identities=11% Similarity=-0.038 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (65)
T 1w1f_A 18 GIHPDDLSFKKGEKMKVLE 36 (65)
T ss_dssp CCSSSCCCBCTTCEEEEEE
T ss_pred CcCCCcCCCCCCCEEEEEE
Confidence 3467899999999999964
No 233
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}
Probab=35.45 E-value=23 Score=20.14 Aligned_cols=17 Identities=6% Similarity=0.073 Sum_probs=15.0
Q ss_pred CCccccCCcCCceeeee
Q 034095 78 QTPDEVILLFCAFCSCK 94 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~ 94 (104)
+.|.+|.+.-||+|.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~ 35 (68)
T 2djq_A 19 KNPGDLKFNKGDVILLR 35 (68)
T ss_dssp CCTTCCCCCTTCEEEEE
T ss_pred CCcCCccCCCCCEEEEE
Confidence 56789999999999985
No 234
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=35.42 E-value=20 Score=20.49 Aligned_cols=19 Identities=11% Similarity=0.066 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (68)
T 1wxt_A 18 ARNPRELTVVQGEKLEVLD 36 (68)
T ss_dssp CCSSSBCCBCTTCEEEEEE
T ss_pred CCCcCcCCCCCCCEEEEEE
Confidence 3578899999999999974
No 235
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.15 E-value=22 Score=20.26 Aligned_cols=18 Identities=6% Similarity=-0.075 Sum_probs=15.7
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~~eLs~~~Gd~i~v~~ 36 (68)
T 2dl4_A 19 QENEDLEMRPGDIITLLE 36 (68)
T ss_dssp SSTTBCCCCTTCEEEEEE
T ss_pred CCcCCcCCCCCCEEEEEE
Confidence 467899999999999974
No 236
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A
Probab=35.13 E-value=20 Score=20.35 Aligned_cols=19 Identities=21% Similarity=-0.053 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (68)
T 2dl3_A 18 AQTLKELPLQKGDIVYIYK 36 (68)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred CCCcCCccCCCCCEEEEeE
Confidence 3567899999999999964
No 237
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.94 E-value=20 Score=20.53 Aligned_cols=19 Identities=5% Similarity=-0.207 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~vl~ 36 (70)
T 2ct4_A 18 GSSEGTISMAEGEDLSLME 36 (70)
T ss_dssp CCSTTCCCBCTTCEEEEEE
T ss_pred CCCCCcCCCCCCCEEEEEe
Confidence 3567899999999999974
No 238
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=34.88 E-value=72 Score=21.40 Aligned_cols=60 Identities=8% Similarity=0.074 Sum_probs=41.8
Q ss_pred CCcEEEEEEccCCCE------EEEEEeCCchHHHHHHHHHHHcCCccceEEEEE-CCEecCCCCCcc
Q 034095 22 SAHINLKVKGQDGNE------VFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPD 81 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~------v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~f-dG~rI~~~~TP~ 81 (104)
+++|-|.|.-..++. -.|.|..+.++..++..--++..++++.--|+| |+.-...++|=.
T Consensus 34 P~rIPVIvEr~~~s~lP~LdK~KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~ 100 (125)
T 3m95_A 34 PDRVPVIVEKAPKARLGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMG 100 (125)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHH
T ss_pred CCeEEEEEEecCCCCCccccCCEEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHH
Confidence 356667776444332 379999999999999999999999887766776 654333344433
No 239
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}
Probab=34.80 E-value=20 Score=20.49 Aligned_cols=18 Identities=28% Similarity=0.224 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 20 ~~~~eLs~~~Gd~i~v~~ 37 (69)
T 2dil_A 20 QNPDELDLSAGDILEVIL 37 (69)
T ss_dssp SSSSSCCBCTTCEEEEEE
T ss_pred cCcCccCCCCCCEEEEEE
Confidence 567899999999999974
No 240
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A
Probab=34.72 E-value=21 Score=19.35 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.5
Q ss_pred CCCccccCCcCCceeeee
Q 034095 77 EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~ 94 (104)
.+.|.+|.+.-||+|.|+
T Consensus 12 ~~~~~eLs~~~Gd~i~v~ 29 (58)
T 4e6r_A 12 AEREDELSLVXGSRVTVM 29 (58)
T ss_dssp CCSTTBCCBCTTCEEEEE
T ss_pred CCCCCEeeEeCCCEEEEe
Confidence 456888999999999986
No 241
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}
Probab=34.59 E-value=20 Score=20.43 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=16.2
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~ 35 (71)
T 2jt4_A 17 AESQDELTIKSGDKVYILD 35 (71)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred CCCCCcccCCCCCEEEEEE
Confidence 3567899999999999975
No 242
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Probab=34.39 E-value=21 Score=19.88 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=15.7
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 13 ~~~~eLs~~~Gd~i~v~~ 30 (65)
T 2oaw_A 13 KSPREVTMKKGDILTLLN 30 (65)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred cCCCCCCCCCCCEEEEEE
Confidence 568899999999999874
No 243
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.35 E-value=19 Score=20.64 Aligned_cols=19 Identities=16% Similarity=-0.018 Sum_probs=16.2
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~~~eLs~~~Gd~i~v~~ 37 (71)
T 2dnu_A 19 SQSKDEIGFEKGVTVEVIR 37 (71)
T ss_dssp CSSTTBCCBCTTCEEEECC
T ss_pred CCCCCCCcCCCCCEEEEeE
Confidence 4578899999999999973
No 244
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=34.34 E-value=20 Score=21.33 Aligned_cols=18 Identities=0% Similarity=-0.047 Sum_probs=15.8
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 22 ~~~~eLsf~~Gd~i~v~~ 39 (80)
T 2i0n_A 22 SDTSLLPFKRNDIITITF 39 (80)
T ss_dssp CSSSSCCBCSSEEEEEEE
T ss_pred CCCCCcCCCCCCEEEEEE
Confidence 568899999999999975
No 245
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A
Probab=34.34 E-value=21 Score=20.25 Aligned_cols=19 Identities=11% Similarity=-0.186 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~ 35 (67)
T 2o9s_A 17 GDTQVEMSFRKGERITLLR 35 (67)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred cCCcCccCCCCCCEEEEEE
Confidence 3478899999999999974
No 246
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.31 E-value=18 Score=22.06 Aligned_cols=20 Identities=25% Similarity=0.082 Sum_probs=16.8
Q ss_pred CCCccccCCcCCceeeeeec
Q 034095 77 EQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~~ 96 (104)
.+.+.+|.+.-||+|.|+--
T Consensus 27 ~~~~~eLs~~~Gd~i~v~~~ 46 (94)
T 2e5k_A 27 PQNDDELELVPGDFIFMSPM 46 (94)
T ss_dssp CSSSSBCCBCTTCEEEECGG
T ss_pred CCCCCCcCCCCCCEEEEEEC
Confidence 46688999999999999753
No 247
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=34.21 E-value=23 Score=20.94 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 29 ~~~~eLs~~~Gd~i~v~~ 46 (81)
T 1x43_A 29 ANSTELSLLADEVITVFS 46 (81)
T ss_dssp SSTTBCCCCTTCEEEEEC
T ss_pred CCCCcCCCCCCCEEEEEE
Confidence 567799999999999974
No 248
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Probab=34.19 E-value=21 Score=20.26 Aligned_cols=19 Identities=16% Similarity=-0.043 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (70)
T 2cuc_A 18 AHRPEELDLQKGEGIRVLG 36 (70)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred cCCCCcCCCCCCCEEEEEE
Confidence 3568899999999999974
No 249
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.18 E-value=20 Score=21.32 Aligned_cols=19 Identities=5% Similarity=-0.148 Sum_probs=16.2
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~~~eLs~~~Gd~i~vl~ 37 (80)
T 2ekh_A 19 KVQDSEISFPAGVEVQVLE 37 (80)
T ss_dssp CSSTTSCCBCTTCEEEEEE
T ss_pred CCCCCccCcCCCCEEEEEE
Confidence 4578899999999999974
No 250
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=34.09 E-value=15 Score=20.89 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=15.0
Q ss_pred CCccccCCcCCceeeee
Q 034095 78 QTPDEVILLFCAFCSCK 94 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~ 94 (104)
+.|.+|.+.-||+|.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~ 35 (68)
T 1wi7_A 19 QNDDELELKVGDIIEVV 35 (68)
T ss_dssp SSTTBCCBCTTCEECCC
T ss_pred CCCCCccCcCCCEEEEE
Confidence 56789999999999986
No 251
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}
Probab=34.04 E-value=21 Score=20.35 Aligned_cols=19 Identities=16% Similarity=0.179 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 14 ~~~~~eLs~~~Gd~i~v~~ 32 (69)
T 1wyx_A 14 AESPDELSFRKGDIMTVLE 32 (69)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred cCCCCccCCcCCCEEEEeE
Confidence 3567899999999999974
No 252
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=33.99 E-value=20 Score=19.89 Aligned_cols=19 Identities=5% Similarity=-0.048 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
...|.+|.+.-||+|.|+-
T Consensus 12 ~~~~~eLs~~~Gd~i~v~~ 30 (60)
T 1i07_A 12 ARNSSELSVMKDDVLEILD 30 (60)
T ss_dssp CSSTTBCCBCTTCEEEECG
T ss_pred CCCCCcccCCCCCEEEEEE
Confidence 3567899999999999974
No 253
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Probab=33.98 E-value=22 Score=19.89 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=15.4
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 18 ~~~~eLs~~~Gd~i~v~~ 35 (64)
T 2ak5_A 18 TNEDELSFSKGDVIHVTR 35 (64)
T ss_dssp CSTTBCCBCTTCEEEEEE
T ss_pred cCcCcccCCCCCEEEEeE
Confidence 457899999999999874
No 254
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}
Probab=33.80 E-value=21 Score=21.59 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=15.5
Q ss_pred CCCccccCCcCCceeeee
Q 034095 77 EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~ 94 (104)
.+.+.+|.++-||+|.|+
T Consensus 30 a~~~~eLsf~~GDiI~V~ 47 (83)
T 2ke9_A 30 LHDPTALNVRAGDVITVL 47 (83)
T ss_dssp CSCTTBCCBCTTCEEEES
T ss_pred CCCCCcccccCCCEEEEE
Confidence 456789999999999986
No 255
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=33.42 E-value=22 Score=21.01 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.7
Q ss_pred CCCcc-ccCCcCCceeeeee
Q 034095 77 EQTPD-EVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~-~L~Medgdii~~~~ 95 (104)
.+.|. +|.+.-||+|.|+-
T Consensus 18 a~~~~dELsf~~Gd~i~Vl~ 37 (69)
T 1nm7_A 18 PENPEMEVALKKGDLMAILS 37 (69)
T ss_dssp CSSTTSCCCCCTTCEEEECC
T ss_pred CCCCCCccCCCCCCEEEEEe
Confidence 35677 99999999999864
No 256
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}
Probab=33.33 E-value=23 Score=20.86 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 2 a~~~~eLs~~~Gd~i~v~~ 20 (77)
T 2jmc_A 2 AMGPREVTMKKGDILTLLN 20 (77)
T ss_dssp CSSSCCCCCCTTCEEECCC
T ss_pred CcCCCccCCCCCCEEEEEE
Confidence 3578899999999999874
No 257
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=33.14 E-value=20 Score=20.58 Aligned_cols=18 Identities=6% Similarity=-0.034 Sum_probs=15.4
Q ss_pred CCCccccCCcCCceeeee
Q 034095 77 EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~ 94 (104)
.+.+.+|.+.-||+|.|+
T Consensus 19 ~~~~~eLs~~~Gd~i~v~ 36 (69)
T 1uhf_A 19 SVEPGDLTFTEGEEILVT 36 (69)
T ss_dssp CSSSSBCCBCTTCEEEEC
T ss_pred CCCcCccCCCCCCEEEEE
Confidence 346889999999999986
No 258
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Probab=33.13 E-value=22 Score=20.60 Aligned_cols=19 Identities=5% Similarity=-0.081 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 24 ~~~~~eLs~~~Gd~i~v~~ 42 (73)
T 3c0c_A 24 PENDGELGFREGDLITLTN 42 (73)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred CCCCCCccCcCCCEEEEEE
Confidence 3567899999999999975
No 259
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A
Probab=32.93 E-value=18 Score=21.09 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 21 ~~~~eLs~~~Gd~i~v~~ 38 (74)
T 1gbq_A 21 TADDELSFKRGDILKVLN 38 (74)
T ss_dssp SSTTBCCBCTTCEEECCB
T ss_pred CCCCeeeEcCCCEEEEeE
Confidence 467899999999999874
No 260
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=32.89 E-value=88 Score=19.33 Aligned_cols=50 Identities=14% Similarity=0.193 Sum_probs=33.7
Q ss_pred CchHHHHHHHHHHHcC-Ccc---------ceE-------EEEECCEecCCCCCccccCCcCCceeeee
Q 034095 44 STQLKKLMNAYCDRQS-VEL---------NSI-------AFLFDGRRLRGEQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 44 tt~L~kLm~aY~~~~g-~~~---------~~l-------rF~fdG~rI~~~~TP~~L~Medgdii~~~ 94 (104)
..+++.|.+..+.+.. +.. ..+ .+..||+.+...+ ..+--+.|||.|.++
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~~~~~L~~gD~V~i~ 93 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-GLETLLKDSDEIGIL 93 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-STTSCCCTTEEEEEE
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-CCCCCCCCCCEEEEE
Confidence 5788999998887742 111 124 8999999885321 122358999999875
No 261
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=32.86 E-value=94 Score=20.28 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=43.5
Q ss_pred CCcEEEEEEccCCC------EEEEEEeCCchHHHHHHHHHHHcCCccceEEEEE-CCEecCCCCCcccc
Q 034095 22 SAHINLKVKGQDGN------EVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLRGEQTPDEV 83 (104)
Q Consensus 22 ~~~I~lkV~~~~g~------~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~f-dG~rI~~~~TP~~L 83 (104)
+++|-|.|.-..++ .-.|.|..+.++..++..--++..++++.--|+| |+.-...++|=.+|
T Consensus 26 P~~IPVIve~~~~s~~p~l~k~KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 94 (117)
T 1eo6_A 26 PDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQL 94 (117)
T ss_dssp TTEEEEEEEECTTCSSCCCSCCEEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred CCeEEEEEEecCCCCCCcccceEEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHH
Confidence 36788888755443 2379999999999999988888888876655667 55533334444444
No 262
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=32.83 E-value=25 Score=20.41 Aligned_cols=19 Identities=11% Similarity=-0.248 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 15 a~~~~ELsf~~Gd~i~vl~ 33 (67)
T 2b86_A 15 AQQDQELDIKKNERLWLLD 33 (67)
T ss_dssp CSSTTSCCBCTTCEEEEEE
T ss_pred CCCCCccccCCCCEEEEEe
Confidence 3467899999999999974
No 263
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Probab=32.80 E-value=22 Score=20.45 Aligned_cols=18 Identities=17% Similarity=0.076 Sum_probs=15.8
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.|.+|.+.-||+|.|+-
T Consensus 21 ~~~~eLs~~~Gd~i~v~~ 38 (73)
T 2k9g_A 21 QNDDELTIKEGDIVTLIN 38 (73)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCeeeECCCCEEEEEE
Confidence 468899999999999974
No 264
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=32.66 E-value=23 Score=20.22 Aligned_cols=19 Identities=11% Similarity=-0.134 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
...+.+|.+.-||+|.|+-
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~ 35 (71)
T 1u5s_A 17 SVTEEELNFEKGETMEVIE 35 (71)
T ss_dssp CCSSSBCCCCSSCCEEEEE
T ss_pred CCCCCcccCCCCCEEEEEE
Confidence 3467899999999999975
No 265
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.64 E-value=23 Score=20.49 Aligned_cols=19 Identities=26% Similarity=0.060 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~~~eLsf~~Gd~i~v~~ 37 (73)
T 2dl7_A 19 GQTDDELSFPEGAIIRILN 37 (73)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred cCCCCcCCCCCCCEEEEEE
Confidence 3467899999999999975
No 266
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.60 E-value=23 Score=20.78 Aligned_cols=18 Identities=11% Similarity=-0.057 Sum_probs=15.4
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~~eLs~~~Gd~i~v~~ 36 (78)
T 2yuo_A 19 HDDDELGFRKNDIITIIS 36 (78)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCCccCCCCCEEEEEE
Confidence 467799999999999974
No 267
>2dnf_A Doublecortin domain-containing protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}
Probab=32.57 E-value=38 Score=21.95 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=38.9
Q ss_pred EEEEEe--CCchHHHHHHHHHHHcCCccceEEEEE--CCEecCCCCCccccCCcCCceeeeeec
Q 034095 37 VFFRIK--RSTQLKKLMNAYCDRQSVELNSIAFLF--DGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 37 v~FkIK--~tt~L~kLm~aY~~~~g~~~~~lrF~f--dG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
+.+-|. ....|..|++.-.++.+++...+|=+| +|.+|.. .++| +||+ +-|-.|
T Consensus 30 ~~v~i~~~~~~sfe~lL~~lT~~v~l~~GaVr~Lyt~~G~~V~~---l~dl--~dg~-~YVa~g 87 (108)
T 2dnf_A 30 SRLLIPRKTLNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVES---GAEL--ENGQ-FYVAVG 87 (108)
T ss_dssp EEEEECHHHHTCHHHHHHHHHHHCCCTTSSCCEEEETTCCEESS---TTSC--CSSC-BEEEEC
T ss_pred EEEEECCccccCHHHHHHHHHHhhCCCCCCEEEEEcCCCCEeCC---HHHh--CCCC-EEEEeC
Confidence 455664 345899999999999999877677676 8998863 5555 4777 444455
No 268
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.40 E-value=19 Score=20.85 Aligned_cols=19 Identities=11% Similarity=-0.123 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (73)
T 2dm1_A 18 ARDMRELSLREGDVVRIYS 36 (73)
T ss_dssp CCSTTBCCBCTTCEEECCB
T ss_pred cCCCCcCCCCCCCEEEEEE
Confidence 3567899999999999874
No 269
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.35 E-value=23 Score=20.44 Aligned_cols=18 Identities=17% Similarity=-0.129 Sum_probs=15.7
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 21 ~~~~eLs~~~Gd~i~v~~ 38 (72)
T 2dl8_A 21 RTARELSFKKGASLLLYQ 38 (72)
T ss_dssp SSSSBCCBCTTCEEEEEE
T ss_pred CCCCEeccCCCCEEEEEe
Confidence 468899999999999874
No 270
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.35 E-value=23 Score=20.86 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=15.4
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 29 ~~~~eLsf~~Gd~i~v~~ 46 (78)
T 2ed0_A 29 DKEDELSFQEGAIIYVIK 46 (78)
T ss_dssp SSTTBCCBCSSCEEEEEE
T ss_pred cCcCcccccCCCEEEEEE
Confidence 467899999999999874
No 271
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.32 E-value=23 Score=20.17 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (71)
T 2cre_A 18 PDCSDELAFSRGDILTILE 36 (71)
T ss_dssp CSSSSBCCCCSSCCEEEEE
T ss_pred cCCCCCCCCCCCCEEEEeE
Confidence 3568899999999999974
No 272
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=32.22 E-value=24 Score=20.50 Aligned_cols=18 Identities=0% Similarity=-0.106 Sum_probs=15.4
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 22 ~~~~eLs~~~Gd~i~v~~ 39 (74)
T 1j3t_A 22 KKDNHLNFSKHDIITVLE 39 (74)
T ss_dssp CSTTBCCBCTTCEEEEEE
T ss_pred CCCCccCCCCCCEEEEEe
Confidence 467799999999999964
No 273
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1
Probab=32.20 E-value=23 Score=20.78 Aligned_cols=18 Identities=6% Similarity=-0.276 Sum_probs=15.3
Q ss_pred CccccCCcCCceeeeeec
Q 034095 79 TPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 79 TP~~L~Medgdii~~~~~ 96 (104)
.+.+|.+.-||+|.|+--
T Consensus 31 ~~~eLsf~~Gd~i~v~~~ 48 (78)
T 1k1z_A 31 FGGFLRLNPGDIVELTKA 48 (78)
T ss_dssp SCCCCCBCTTCEEEEEEC
T ss_pred CCCccCCCCCCEEEEEEc
Confidence 368999999999999753
No 274
>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A
Probab=32.13 E-value=24 Score=19.56 Aligned_cols=19 Identities=21% Similarity=0.120 Sum_probs=15.8
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (65)
T 3u23_A 18 PQNEDELELKVGDIIDINE 36 (65)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred CCCcCCcCCCCCCEEEEEE
Confidence 3568899999999999863
No 275
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=31.94 E-value=1.1e+02 Score=20.05 Aligned_cols=53 Identities=9% Similarity=0.117 Sum_probs=40.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeC--CchHHHHHHHHHHHcCCccceEEEEE---CCEecCCC
Q 034095 22 SAHINLKVKGQDGNEVFFRIKR--STQLKKLMNAYCDRQSVELNSIAFLF---DGRRLRGE 77 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~--tt~L~kLm~aY~~~~g~~~~~lrF~f---dG~rI~~~ 77 (104)
...++|+|.- .|+...|.|.- ++.+..|....+...+++ ++++.| ||..|+-+
T Consensus 12 ~~~v~lkV~f-~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY~DEenD~V~i~ 69 (101)
T 1wj6_A 12 EPQVTLNVTF-KNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKYLDEENEEVSIN 69 (101)
T ss_dssp CSCEEEEEEE-TTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEEECTTSCEECCC
T ss_pred CccEEEEEEE-cCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCCCCEEEEe
Confidence 3468888855 67777899965 999999999999999986 666666 56666643
No 276
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Probab=31.92 E-value=22 Score=20.14 Aligned_cols=19 Identities=5% Similarity=-0.221 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~~~eLs~~~Gd~i~v~~ 37 (67)
T 1aww_A 19 PMNANDLQLRKGDEYFILE 37 (67)
T ss_dssp CSSSSSCCCCSSCEEECCC
T ss_pred CCCCCCccCCCCCEEEEEE
Confidence 3568899999999999874
No 277
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.87 E-value=21 Score=21.36 Aligned_cols=18 Identities=0% Similarity=-0.276 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 20 ~~~~eLsf~~Gd~i~v~~ 37 (85)
T 2dlp_A 20 DNCSLLSFHRGDLIKLLP 37 (85)
T ss_dssp SSSSBCCBCTTCEEEECC
T ss_pred cCcCCccCcCCCEEEEEE
Confidence 567899999999999874
No 278
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}
Probab=31.81 E-value=24 Score=20.71 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=15.7
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 16 a~~~~eLs~~~Gd~i~v~~ 34 (73)
T 2lcs_A 16 PENDNELRLAEGDIVFISY 34 (73)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred CCCCCccCCcCCCEEEEEE
Confidence 3567899999999999853
No 279
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.59 E-value=27 Score=21.15 Aligned_cols=19 Identities=16% Similarity=0.041 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 28 ~~~~~eLs~~~Gd~i~v~~ 46 (88)
T 2cub_A 28 AEREDELSLIKGTKVIVME 46 (88)
T ss_dssp CCSTTBCCCCTTEEEEEEE
T ss_pred CCCCCCcCCCCCCEEEEEE
Confidence 3568899999999999974
No 280
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1
Probab=31.45 E-value=35 Score=19.20 Aligned_cols=19 Identities=0% Similarity=-0.193 Sum_probs=14.9
Q ss_pred CCccccCCcCCceeeeeec
Q 034095 78 QTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~~ 96 (104)
..+++|.+.-||+|.|+..
T Consensus 20 ~~~e~Lsf~~Gd~i~v~~~ 38 (67)
T 3rnj_A 20 DNSTLLSFKEGDLITLLVP 38 (67)
T ss_dssp SCTTBCCBCTTCEEEECSS
T ss_pred CCCCCccCCCCCEEEEeec
Confidence 3445699999999999854
No 281
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural protein; 1.75A {Gallus gallus}
Probab=31.40 E-value=25 Score=20.80 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 14 ~~~~eLs~~~Gd~i~v~~ 31 (80)
T 2pqh_A 14 KSPREVTMKKGDILTLLN 31 (80)
T ss_dssp CSTTBCCBCTTCEEEEEE
T ss_pred CCCCccCCCCCCEEEEEE
Confidence 467799999999999974
No 282
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=31.32 E-value=28 Score=24.19 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=41.8
Q ss_pred CEEEEEEeCCchHHHHHHHHHHHcCC-----ccceEEEEE-C---CEe--------c------CCCCCccccCCcCCcee
Q 034095 35 NEVFFRIKRSTQLKKLMNAYCDRQSV-----ELNSIAFLF-D---GRR--------L------RGEQTPDEVILLFCAFC 91 (104)
Q Consensus 35 ~~v~FkIK~tt~L~kLm~aY~~~~g~-----~~~~lrF~f-d---G~r--------I------~~~~TP~~L~Medgdii 91 (104)
+++++-.=+++.|+.|-..-.+..-- ..=+|+|.| | |.- + .++.|-.++...-||+|
T Consensus 54 ~ElQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyi 133 (143)
T 4a6q_A 54 SELQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYL 133 (143)
T ss_dssp CCEEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEE
T ss_pred ceeEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEE
Confidence 36888888999999887666554321 122445554 3 221 1 25899999999999999
Q ss_pred eeee
Q 034095 92 SCKY 95 (104)
Q Consensus 92 ~~~~ 95 (104)
||-|
T Consensus 134 dvaI 137 (143)
T 4a6q_A 134 DIAI 137 (143)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9977
No 283
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=31.06 E-value=28 Score=20.15 Aligned_cols=19 Identities=11% Similarity=-0.244 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (72)
T 2jw4_A 18 AQQEQELDIKKNERLWLLD 36 (72)
T ss_dssp CSSTTSCCCCTTCEEEEEE
T ss_pred cCCCCcccCCCCCEEEEEE
Confidence 3567899999999999974
No 284
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=30.93 E-value=86 Score=26.24 Aligned_cols=58 Identities=14% Similarity=0.100 Sum_probs=42.2
Q ss_pred EEEEEEeCCchHHHHHHHHHHHc--CCccceE--------EEEECCE--------ecCCCCCccccCCcCCceeee
Q 034095 36 EVFFRIKRSTQLKKLMNAYCDRQ--SVELNSI--------AFLFDGR--------RLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 36 ~v~FkIK~tt~L~kLm~aY~~~~--g~~~~~l--------rF~fdG~--------rI~~~~TP~~L~Medgdii~~ 93 (104)
...+.+..+.+|+.|.+..|++. ++...++ +.+|+.. +-+-+.|-.+|++.+|++|-|
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~ 788 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAV 788 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEE
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEE
Confidence 45788888889999999999974 3544343 5567532 123367888999999999877
No 285
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.81 E-value=25 Score=21.25 Aligned_cols=28 Identities=4% Similarity=-0.173 Sum_probs=19.8
Q ss_pred eEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 64 SIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 64 ~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.++-+||-. .+.+.+|.+.-||+|.|+-
T Consensus 19 ~~~alydy~----~~~~~eLsf~~Gd~i~v~~ 46 (90)
T 2yup_A 19 EAVAQYTFK----GDLEVELSFRKGEHICLIR 46 (90)
T ss_dssp EEEECSCCC----CCSSSBCCCCTTCEEEESS
T ss_pred EEEEeecCC----cCCcCcCCCCCCCEEEEEE
Confidence 344455432 3568899999999999863
No 286
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1
Probab=30.45 E-value=26 Score=20.04 Aligned_cols=19 Identities=0% Similarity=-0.136 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
...+.+|.+.-||+|.|+-
T Consensus 22 ~~~~~eLs~~~Gd~i~v~~ 40 (71)
T 1csk_A 22 GTAEQDLPFCKGDVLTIVA 40 (71)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred cCCCCcCCCCCCCEEEEeE
Confidence 3467899999999999986
No 287
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=30.43 E-value=53 Score=21.69 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=21.3
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCch
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQ 46 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~ 46 (104)
....+|++.+.....+-||||-+.+
T Consensus 24 gg~~~l~L~N~t~~~vAFKVKtT~p 48 (116)
T 1m1s_A 24 GGNSTHNITSESDSRLAFKVKSSNN 48 (116)
T ss_dssp CEEEEEEEEECSSSEEEEEEEESCT
T ss_pred CCEEEEEEECCCCCeEEEEEEecCC
Confidence 4577899999999999999998776
No 288
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=30.40 E-value=88 Score=19.81 Aligned_cols=59 Identities=2% Similarity=-0.077 Sum_probs=46.3
Q ss_pred EEEEeCCchHHHHHHHHHHHc-C-----CccceEEEEECC--EecCCCCCccccCCcCCceeeeeec
Q 034095 38 FFRIKRSTQLKKLMNAYCDRQ-S-----VELNSIAFLFDG--RRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 38 ~FkIK~tt~L~kLm~aY~~~~-g-----~~~~~lrF~fdG--~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
-.-|--..+|..+=++-|-.. | .+-..+|..++| +++-.+.|-++-+|.=-|.|+|.|.
T Consensus 16 LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 345566667777777777552 3 233579999999 9999999999999999999999874
No 289
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=30.36 E-value=20 Score=20.75 Aligned_cols=18 Identities=6% Similarity=-0.073 Sum_probs=15.3
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 22 ~~~~eLsf~~Gd~i~v~~ 39 (72)
T 1ugv_A 22 EHDSELSFTAGTVFDNVH 39 (72)
T ss_dssp CSSSBCCBCTTCEEBSCC
T ss_pred cCCCEeCCcCCCEEEEEE
Confidence 467899999999999864
No 290
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.30 E-value=21 Score=20.37 Aligned_cols=18 Identities=17% Similarity=0.115 Sum_probs=15.4
Q ss_pred CCCccccCCcCCceeeee
Q 034095 77 EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~ 94 (104)
.+.|.+|.+.-||+|.|+
T Consensus 18 ~~~~~eLs~~~Gd~i~v~ 35 (69)
T 2eqi_A 18 AKRSDELTFCRGALIHNV 35 (69)
T ss_dssp CCSSSCCCBCTTCEEESC
T ss_pred CCCcCccCCCCCCEEEEE
Confidence 356789999999999986
No 291
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=30.16 E-value=26 Score=20.68 Aligned_cols=18 Identities=6% Similarity=-0.032 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
..+.+|.+.-||+|.|+-
T Consensus 29 ~~~~eLsf~~Gd~i~Vl~ 46 (72)
T 2l0a_A 29 AEDNELTFKAGEIITVLD 46 (72)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCccCCCCCCEEEEEE
Confidence 457899999999999974
No 292
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=30.14 E-value=23 Score=20.53 Aligned_cols=19 Identities=5% Similarity=-0.078 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
...+.+|.+.-||+|.|+-
T Consensus 18 ~~~~~eLs~~~Gd~i~v~~ 36 (77)
T 2d8j_A 18 ARTAEDLSFRAGDKLQVLD 36 (77)
T ss_dssp CSSSSBCCBCTTCCEEEEE
T ss_pred CCCCCccCCCCCCEEEEEE
Confidence 3467899999999999974
No 293
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=29.99 E-value=27 Score=19.77 Aligned_cols=19 Identities=5% Similarity=-0.235 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
...|.+|.+.-||+|.|+-
T Consensus 13 ~~~~~eLs~~~Gd~i~v~~ 31 (67)
T 1gl5_A 13 ATEAHDLRLERGQEYIILE 31 (67)
T ss_dssp CSSSSBCCBCTTCEEEEEE
T ss_pred CCCCCeecCCcCCEEEEEE
Confidence 3567899999999999974
No 294
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A
Probab=29.94 E-value=28 Score=19.36 Aligned_cols=19 Identities=11% Similarity=-0.118 Sum_probs=15.7
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 20 ~~~~~eLs~~~Gd~i~v~~ 38 (65)
T 3ulr_B 20 AAGDDEISFDPDDIITNIE 38 (65)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCcCEeeEecCCEEEEEE
Confidence 3467899999999999863
No 295
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.82 E-value=30 Score=20.28 Aligned_cols=17 Identities=12% Similarity=-0.080 Sum_probs=15.0
Q ss_pred CCccccCCcCCceeeee
Q 034095 78 QTPDEVILLFCAFCSCK 94 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~ 94 (104)
+.+.+|.+.-||+|.|+
T Consensus 29 ~~~~eLs~~~Gd~i~v~ 45 (79)
T 1x69_A 29 AGDDEISFDPDDIITNI 45 (79)
T ss_dssp SSSSBCCCCTTCEEEEE
T ss_pred CCCCCcCcCCCCEEEEe
Confidence 46789999999999997
No 296
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.80 E-value=27 Score=20.77 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=16.2
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
...|.+|.+.-||+|.|+-
T Consensus 28 ~~~~~eLsf~~Gd~i~v~~ 46 (81)
T 1x6g_A 28 RPKPGELAFRKGDVVTILE 46 (81)
T ss_dssp SCCTTCCCBCTTCEEEEEE
T ss_pred cCCCCCCCCCCCCEEEEEe
Confidence 3568899999999999975
No 297
>3osv_A Flagellar basal-BODY ROD modification protein FLG; FLGD, flagellum, P. aeruginosa, structural protein; 2.35A {Pseudomonas aeruginosa}
Probab=29.61 E-value=81 Score=20.75 Aligned_cols=40 Identities=23% Similarity=0.454 Sum_probs=27.6
Q ss_pred CCcEEEEEEccCCCEE-EEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCC
Q 034095 22 SAHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGE 77 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v-~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~ 77 (104)
...++|.|.+.+|..| .+.+. ..+....+|.+||..-.++
T Consensus 36 a~~v~v~I~d~~G~~V~t~~~g----------------~~~aG~~~f~WDG~d~~G~ 76 (138)
T 3osv_A 36 SSNVWVNVYDDKGTVVNRINLG----------------QQAAGSVSFMWDGKDSSGN 76 (138)
T ss_dssp EEEEEEEEECTTSCEEEEEEEE----------------EECSEEEEEEECSBCTTSC
T ss_pred CcEEEEEEEcCCCCEEEEEEcC----------------CcCCceEEEEECCcCCCCC
Confidence 4578999999999886 44443 1355677888888754443
No 298
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=29.60 E-value=56 Score=27.33 Aligned_cols=70 Identities=10% Similarity=0.111 Sum_probs=48.2
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEecCCCCCccccCCcCCceeeeeec
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
.++|. ..++.+..|.......+..|...|.+-..-...-++=++|-.. .+.+.|..|.+.-||+|-++-+
T Consensus 537 ~ftl~--~~~~~~~~F~T~~a~~I~~LI~~yi~~Lk~rs~~~~Al~d~~~-~~~~~~~~L~f~kGDlI~l~~~ 606 (655)
T 3pvl_A 537 SFTLA--TIKGDEYTFTSSNAEDIRDLVVTFLEGLRKRSKYVVALQDNPN-PAGEESGFLSFAKGDLIILDHD 606 (655)
T ss_dssp EEEEE--ETTSCEEEEECTTHHHHHHHHHHHHHHHHHHCCEEEESSCCCC------CCBCCCCTTCEEEESSC
T ss_pred EEEEE--eccCceEEEEcCCHHHHHHHHHHHHHHHhhcchhhhHHhhccc-CCCCCCCcccccCCCEEEEccc
Confidence 44444 4567778888888889999999999876544444555555432 1245689999999999988765
No 299
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1
Probab=29.41 E-value=27 Score=21.21 Aligned_cols=18 Identities=17% Similarity=0.146 Sum_probs=15.8
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 29 ~~~~eLsf~~Gd~i~Vl~ 46 (83)
T 1neg_A 29 KSPREVTMKKGDILTLLN 46 (83)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCccccCCCCEEEEEE
Confidence 568899999999999974
No 300
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.38 E-value=27 Score=20.48 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 24 ~~~~~eLs~~~Gd~i~v~~ 42 (78)
T 2dl5_A 24 ASQPDELTIEEHEVLEVIE 42 (78)
T ss_dssp CCSTTBCCBCSSEEEEEEE
T ss_pred CCCCCCCCCCCCCEEEEEe
Confidence 3567799999999999975
No 301
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=29.22 E-value=33 Score=19.52 Aligned_cols=19 Identities=0% Similarity=-0.060 Sum_probs=15.6
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 14 ~~~~~eLsf~~Gd~i~v~~ 32 (65)
T 1b07_A 14 GNDEEDLPFKKGDILRIRD 32 (65)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred CCCCCccCCcCCCEEEEEE
Confidence 3467799999999999864
No 302
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Probab=29.21 E-value=30 Score=19.08 Aligned_cols=19 Identities=21% Similarity=0.053 Sum_probs=15.7
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~ 35 (64)
T 4f14_A 17 AQDEDEVSFRDGDYIVNVQ 35 (64)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CcCCCcCCCCCCCEEEEEE
Confidence 3567899999999998864
No 303
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Probab=29.18 E-value=23 Score=20.46 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=15.3
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
..+.+|.+.-||+|.|+-
T Consensus 19 ~~~~eLs~~~Gd~i~v~~ 36 (73)
T 2dbm_A 19 ENEGELGFKEGDIITLTN 36 (73)
T ss_dssp CSTTCCCBCTTCEEECCB
T ss_pred CCCCCccCCCCCEEEEEE
Confidence 467799999999999864
No 304
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}
Probab=29.13 E-value=27 Score=20.20 Aligned_cols=17 Identities=12% Similarity=-0.105 Sum_probs=15.2
Q ss_pred CccccCCcCCceeeeee
Q 034095 79 TPDEVILLFCAFCSCKY 95 (104)
Q Consensus 79 TP~~L~Medgdii~~~~ 95 (104)
.+.+|.+.-||+|.|+-
T Consensus 12 ~~~eLs~~~Gd~i~v~~ 28 (73)
T 2kxd_A 12 GGREVTMKKGDILTLLN 28 (73)
T ss_dssp CSCCCCBCTTCEEEEEE
T ss_pred CCCEeeEcCCCEEEEEE
Confidence 68899999999999974
No 305
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=29.10 E-value=29 Score=20.39 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
..+.+|.+.-||+|.|+-
T Consensus 25 ~~~~eLs~~~Gd~i~vl~ 42 (79)
T 1uhc_A 25 RNPNELSVSANQKLKILE 42 (79)
T ss_dssp CSSSBCCBCTTCEEEEEE
T ss_pred CCCCccCCCCCCEEEEEE
Confidence 467899999999999974
No 306
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.03 E-value=28 Score=20.39 Aligned_cols=17 Identities=18% Similarity=0.050 Sum_probs=14.9
Q ss_pred CCccccCCcCCceeeee
Q 034095 78 QTPDEVILLFCAFCSCK 94 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~ 94 (104)
+.+.+|.+.-||+|.|+
T Consensus 19 ~~~~eLs~~~Gd~i~v~ 35 (79)
T 2yun_A 19 RQDDELNLEKGDIVIIH 35 (79)
T ss_dssp SSTTBCCBCTTCEEEEE
T ss_pred CCCCCcCCCCCCEEEEE
Confidence 46789999999999986
No 307
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A
Probab=29.02 E-value=67 Score=20.96 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=20.4
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCch
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQ 46 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~ 46 (104)
...-.|++.+.....|-||||-|.+
T Consensus 26 ~~~~~l~l~N~s~~~vaFKVKTT~p 50 (126)
T 1msp_A 26 KHTYHIKITNAGGRRIGWAIKTTNM 50 (126)
T ss_dssp CCCEEEEEEECSSSCEEEEEEESCT
T ss_pred ceEEEEEEECCCCCeEEEEEEcCCC
Confidence 3456788889888999999997765
No 308
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.01 E-value=31 Score=20.37 Aligned_cols=19 Identities=5% Similarity=-0.256 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 28 a~~~~eLs~~~Gd~i~v~~ 46 (79)
T 2cud_A 28 SPDISPPIFRRGEKLRVIS 46 (79)
T ss_dssp CTTTSCCSSCTTCEEEEEE
T ss_pred CCCCCcCCCCCCCEEEEEe
Confidence 3567899999999999974
No 309
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=28.92 E-value=32 Score=20.73 Aligned_cols=19 Identities=11% Similarity=-0.134 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 28 ~~~~~eLs~~~Gd~i~v~~ 46 (91)
T 1wx6_A 28 SVTEEELNFEKGETMEVIE 46 (91)
T ss_dssp CSSSSBCCCCTTCEEEEEE
T ss_pred cCCCCcccCCCCCEEEEEE
Confidence 3567899999999999975
No 310
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=28.82 E-value=32 Score=21.47 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=14.5
Q ss_pred ECCEecCCCCCccccCCcCCceeee
Q 034095 69 FDGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 69 fdG~rI~~~~TP~~L~Medgdii~~ 93 (104)
.||++|.. ...|.+||+|.+
T Consensus 73 vng~~i~~-----~~~L~~Gd~i~~ 92 (106)
T 3gqs_A 73 VEGRKIEH-----QSTLSANQVVAL 92 (106)
T ss_dssp ETTEECSS-----EEECCTTCCEEE
T ss_pred ECCEECCC-----CeECCCCCEEEE
Confidence 47777765 346899998864
No 311
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=28.82 E-value=25 Score=21.42 Aligned_cols=18 Identities=11% Similarity=0.017 Sum_probs=15.2
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 17 ~~~~eLsf~~Gd~i~v~~ 34 (93)
T 1uff_A 17 RNHDEMSFNSGDIIQVDE 34 (93)
T ss_dssp CSSSCCCBCTTCEEEECS
T ss_pred CCCCCcCCCCCCEEEEeE
Confidence 467799999999999863
No 312
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=28.80 E-value=25 Score=18.37 Aligned_cols=26 Identities=8% Similarity=0.061 Sum_probs=21.6
Q ss_pred EEEEeCCchHHHHHHHHHHHcCCccc
Q 034095 38 FFRIKRSTQLKKLMNAYCDRQSVELN 63 (104)
Q Consensus 38 ~FkIK~tt~L~kLm~aY~~~~g~~~~ 63 (104)
.+.|+-...+..-++.||++.|.+.+
T Consensus 4 ritv~l~~~l~~~Ld~~a~~~g~srS 29 (45)
T 2cpg_A 4 RLTITLSESVLENLEKMAREMGLSKS 29 (45)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHTCCHH
T ss_pred eEEEecCHHHHHHHHHHHHHHCcCHH
Confidence 46777788899999999999998754
No 313
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A
Probab=28.76 E-value=29 Score=20.62 Aligned_cols=18 Identities=11% Similarity=-0.049 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 17 ~~~~eLs~~~Gd~i~vl~ 34 (79)
T 3cqt_A 17 RTEDDLSFHKGEKFQILN 34 (79)
T ss_dssp CSTTBCCBCTTCEEEEEE
T ss_pred CCcCcCCCCCCCEEEEEE
Confidence 568899999999999973
No 314
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=28.73 E-value=1.3e+02 Score=20.08 Aligned_cols=72 Identities=15% Similarity=0.091 Sum_probs=45.8
Q ss_pred CCCCC-CCCcEEEEEEc-cCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEE-CCEecC--CCCCcc--cc-----
Q 034095 16 KKPVD-QSAHINLKVKG-QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLF-DGRRLR--GEQTPD--EV----- 83 (104)
Q Consensus 16 ~kp~~-~~~~I~lkV~~-~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~f-dG~rI~--~~~TP~--~L----- 83 (104)
+||-. +...+.+++++ .+|..+.-..+.+.++.. ..+....++|+| ||.-+. ...|-+ +|
T Consensus 33 ~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~--------~~ve~~~~qylY~dg~~~~fMD~etyeq~~l~~~~~ 104 (138)
T 1iz6_A 33 SSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDV--------PIIDKKTAQVIAITPDTVQIMDMETYETFEVPIDTG 104 (138)
T ss_dssp CCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEE--------ECCEEEEEEEEEECSSEEEEECTTTCCEEEEEHHHH
T ss_pred ecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEee--------ceEEEEEEEEEEeCCCEEEEEeCCCCceEEeeCCHH
Confidence 45654 56678888888 578887666666655532 567788899998 565543 222211 12
Q ss_pred -------CCcCCceeeeee
Q 034095 84 -------ILLFCAFCSCKY 95 (104)
Q Consensus 84 -------~Medgdii~~~~ 95 (104)
-|.+|..|.|+.
T Consensus 105 ~lgd~~~~l~e~~~V~v~~ 123 (138)
T 1iz6_A 105 VADEIRDQLKEGINVEYWE 123 (138)
T ss_dssp BCGGGTTTCCTTCEEEEEE
T ss_pred HHHHHHHhCCCCCEEEEEE
Confidence 467788887775
No 315
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.66 E-value=32 Score=20.66 Aligned_cols=18 Identities=6% Similarity=-0.077 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 29 ~~~~eLsf~~Gd~i~v~~ 46 (88)
T 1x2q_A 29 VEDNELTFKHGEIIIVLD 46 (88)
T ss_dssp CSSSCCCCCSSCEEEEEE
T ss_pred CCcCccCCCCCCEEEEEE
Confidence 457799999999999975
No 316
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}
Probab=28.60 E-value=1.7e+02 Score=21.39 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=42.4
Q ss_pred cEEEEEEccCC--CEEEEEEeC---C----------------chHHHHHHHHHHHcCCc-----------cceEEEEECC
Q 034095 24 HINLKVKGQDG--NEVFFRIKR---S----------------TQLKKLMNAYCDRQSVE-----------LNSIAFLFDG 71 (104)
Q Consensus 24 ~I~lkV~~~~g--~~v~FkIK~---t----------------t~L~kLm~aY~~~~g~~-----------~~~lrF~fdG 71 (104)
...|.|...+. ...+|+|.. + ..+..|.+.|....... ...++-+||=
T Consensus 77 ~y~LSv~~~~~~~~v~H~~I~~~~~~~~g~~~g~~~~~~~~F~Sl~eLv~~y~~~~~~~~~L~~P~~~p~~~~~~al~dy 156 (308)
T 3qwy_A 77 EYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKF 156 (308)
T ss_dssp CEEEEEECCSSSSCEEEEEEEECCCCTTTTCCCCEEETTEEESSHHHHHHHHHHSCSSSCCCCEECCCCCCEEEEESSCB
T ss_pred CEEEEEEeCCCCCceEEEEEeeccCCCcCcccceEEEeCeeeCCHHHHHHHHhhcccccchhccccccccceeEEEeceE
Confidence 44566665322 255888865 2 35778888887664320 1234444442
Q ss_pred EecCCCCCccccCCcCCceeeeee
Q 034095 72 RRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 72 ~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
..+.+.+|.+.-||+|.|+-
T Consensus 157 ----~~~~~~eLsf~~Gd~i~v~~ 176 (308)
T 3qwy_A 157 ----TGERETDLPFEQGERLEILS 176 (308)
T ss_dssp ----CCSSTTBCCBCTTCEEEEEE
T ss_pred ----cCCCCCcCcCCCCCEEEEEE
Confidence 34578899999999999974
No 317
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}
Probab=28.52 E-value=30 Score=19.56 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=15.6
Q ss_pred CCCccccCCcCCceeeee
Q 034095 77 EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~ 94 (104)
.+.+.+|.+.-||+|.|+
T Consensus 17 ~~~~~eLs~~~Gd~i~v~ 34 (69)
T 4esr_A 17 ANRSDELTIHRGDIIRVF 34 (69)
T ss_dssp CCSTTBCCBCTTCEEEEE
T ss_pred CCCcCcCCCCCCCEEEEE
Confidence 357889999999999987
No 318
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Probab=28.45 E-value=26 Score=19.82 Aligned_cols=19 Identities=5% Similarity=-0.136 Sum_probs=15.6
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.|.+|.+.-||+|.|+-
T Consensus 21 ~~~~~eLs~~~Gd~i~v~~ 39 (68)
T 1s1n_A 21 AQQVGDLTFKKGEILLVIE 39 (68)
T ss_dssp CSSSSCCCBCSSEEEEECS
T ss_pred CCCCCcCCCCCCCEEEEEE
Confidence 3467899999999999864
No 319
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=28.31 E-value=30 Score=23.15 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=13.6
Q ss_pred CCEecCCCCCccccCCcCCceeee
Q 034095 70 DGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 70 dG~rI~~~~TP~~L~Medgdii~~ 93 (104)
||++|... ...|.+||+|.+
T Consensus 92 Ng~~i~~~----~~~L~~GD~I~l 111 (151)
T 2jqj_A 92 NGNRLVKK----DYILKNGDRIVF 111 (151)
T ss_dssp TTEECCSS----CEEECSSEEEEE
T ss_pred CCEEcCCC----ceECCCCCEEEE
Confidence 66666543 466889998854
No 320
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=28.29 E-value=29 Score=21.37 Aligned_cols=18 Identities=11% Similarity=-0.093 Sum_probs=15.6
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 41 ~~~~ELsf~~GD~I~Vl~ 58 (89)
T 2rf0_A 41 AGDEELTLRRGDRVQVLS 58 (89)
T ss_dssp SSTTBCCBCTTCEEEEEE
T ss_pred CCCCccccCCCCEEEEEe
Confidence 457799999999999975
No 321
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=28.19 E-value=36 Score=19.59 Aligned_cols=32 Identities=22% Similarity=0.516 Sum_probs=25.7
Q ss_pred CCCEEEEEEeCCchHHHHHHHHHHHcCCccce
Q 034095 33 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNS 64 (104)
Q Consensus 33 ~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~ 64 (104)
++....|.|+-+..|-+-+..||...|.+++.
T Consensus 10 ~k~kg~~~vrId~eLH~rlk~~Aa~~g~Sln~ 41 (56)
T 2kel_A 10 KKQKAVFGIYMDKDLKTRLKVYCAKNNLQLTQ 41 (56)
T ss_dssp -CCEEEEEEEEEHHHHHHHHHHHHHSCCCHHH
T ss_pred ccCeeeEEEEeCHHHHHHHHHHHHHcCCCHHH
Confidence 44556788888899999999999999987653
No 322
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}
Probab=27.89 E-value=21 Score=21.59 Aligned_cols=19 Identities=5% Similarity=-0.253 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 29 a~~~~eLsf~~Gd~I~Vl~ 47 (79)
T 1z9q_A 29 GNSKLELNFKAGDVIFLLS 47 (79)
T ss_dssp CSSTTBCCCCTTCCBCCCE
T ss_pred CCCCCcccccCCCEEEEeE
Confidence 3567899999999999864
No 323
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*
Probab=27.86 E-value=31 Score=19.72 Aligned_cols=29 Identities=14% Similarity=0.003 Sum_probs=20.2
Q ss_pred ceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 63 NSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 63 ~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
..++-+||- ..+.+.+|.+.-||+|.|+-
T Consensus 16 ~~~~al~dy----~~~~~~eLs~~~Gd~i~v~~ 44 (73)
T 3h0h_A 16 TLFVALYDY----EAITEDDLSFHKGEKFQILN 44 (73)
T ss_dssp CEEEESSCB----CCSSTTBCCBCTTCEEEEEE
T ss_pred EEEEECccC----CCCCCCcceEeCCCEEEEEE
Confidence 344445542 23467899999999999874
No 324
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=27.77 E-value=36 Score=20.97 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=14.6
Q ss_pred CCccccCCcCCceeeee
Q 034095 78 QTPDEVILLFCAFCSCK 94 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~ 94 (104)
..+.++.|..||+|.|+
T Consensus 19 ~~~~ei~lk~Gd~VeVl 35 (71)
T 1v1c_A 19 AEQDAITLREGQYVEVL 35 (71)
T ss_dssp CCTTBCCBCTTCEEEEE
T ss_pred CCcceeeecCCCEEEEE
Confidence 45669999999999997
No 325
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Probab=27.67 E-value=1.5e+02 Score=20.22 Aligned_cols=67 Identities=19% Similarity=0.182 Sum_probs=40.5
Q ss_pred cEEEEEEccCCCEEEEEEeCC------------chHHHHHHHHHHHcCC---------------ccceEEEEECCEecCC
Q 034095 24 HINLKVKGQDGNEVFFRIKRS------------TQLKKLMNAYCDRQSV---------------ELNSIAFLFDGRRLRG 76 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~t------------t~L~kLm~aY~~~~g~---------------~~~~lrF~fdG~rI~~ 76 (104)
...|.|.. .+...+|+|.+. ..+..|.+.|....-- ....++=+||-.
T Consensus 94 ~~~LSv~~-~~~v~h~~I~~~~~g~~~~~~~~f~sl~eLv~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~y~---- 168 (217)
T 1gri_A 94 DFSLSVKF-GNDVQHFKVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFD---- 168 (217)
T ss_dssp CEEEEEEE-TTEEEEEEEEECSSSCEESSSCEESSHHHHHHHHHHSCSSSSTTCCCCBCCCCCCCCCEEEESSCCC----
T ss_pred CEEEEEEE-CCEEEEEEEEEcCCCCEEEeeeEcCCHHHHHHhhhccccccccceeecccccCCCCceEEEecCCcc----
Confidence 34556554 333448888753 3577888888654210 122344444432
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 169 ~~~~~eL~~~~Gd~i~v~~ 187 (217)
T 1gri_A 169 PQEDGELGFRRGDFIHVMD 187 (217)
T ss_dssp CSSTTBCCCCTTCEEEEEE
T ss_pred CCCCCcCCCCCCCEEEEEE
Confidence 3567899999999999863
No 326
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.49 E-value=34 Score=20.38 Aligned_cols=19 Identities=16% Similarity=-0.001 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
...+.+|.+.-||+|.|+-
T Consensus 30 ~~~~~eLs~~~Gd~i~v~~ 48 (85)
T 2yuq_A 30 TNDPQELALRRNEEYCLLD 48 (85)
T ss_dssp CSCSSBCCCCBTEEEEEEE
T ss_pred CCCCCcCCCCCCCEEEEEE
Confidence 3467899999999999974
No 327
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A
Probab=27.35 E-value=34 Score=18.83 Aligned_cols=19 Identities=0% Similarity=-0.249 Sum_probs=16.2
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 16 ~~~~~eLs~~~Gd~i~v~~ 34 (63)
T 3eg3_A 16 ASGDNTLSITKGEKLRVLG 34 (63)
T ss_dssp CCSSSBCCBCTTCEEEEEE
T ss_pred CCCCCccCCCCCCEEEEEE
Confidence 3577899999999999975
No 328
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=27.32 E-value=60 Score=21.42 Aligned_cols=49 Identities=12% Similarity=0.210 Sum_probs=40.2
Q ss_pred CcEEEEEEc-cCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECC
Q 034095 23 AHINLKVKG-QDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDG 71 (104)
Q Consensus 23 ~~I~lkV~~-~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG 71 (104)
..|++++.- +.+..|.++-|++-++..++..--.++|+..+.+.....|
T Consensus 15 ~Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g 64 (104)
T 1wfy_A 15 NRITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPG 64 (104)
T ss_dssp SCEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTT
T ss_pred eeEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecC
Confidence 578899866 8899999999999999999998888888877666654433
No 329
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2
Probab=27.30 E-value=45 Score=21.53 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=19.4
Q ss_pred cEEEEEEccCCCEEEEEEeCCch
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQ 46 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~ 46 (104)
.-+|++.+.....+-||||-+.+
T Consensus 18 ~~~l~L~N~t~~~vaFKVKtT~p 40 (109)
T 1row_A 18 SSTHKLVNGGAEKIVFKIKSSNN 40 (109)
T ss_dssp EEEEEEEECSSSCEEEEEEESCS
T ss_pred eEEEEEEcCCCCeEEEEEEeCCC
Confidence 56888888888889999998776
No 330
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.30 E-value=38 Score=19.65 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=15.2
Q ss_pred CccccCCcCCceeeeee
Q 034095 79 TPDEVILLFCAFCSCKY 95 (104)
Q Consensus 79 TP~~L~Medgdii~~~~ 95 (104)
.+.+|.+.-||+|.|+-
T Consensus 23 ~~~eLs~~~Gd~i~v~~ 39 (77)
T 2enm_A 23 GNNELTVTEGEIITVTN 39 (77)
T ss_dssp TSSBCCCCTTCEEEEEE
T ss_pred CCCeecCCCCCEEEEeE
Confidence 67799999999999975
No 331
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.26 E-value=35 Score=20.12 Aligned_cols=19 Identities=5% Similarity=-0.130 Sum_probs=16.0
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 21 ~~~~~eLs~~~Gd~i~v~~ 39 (81)
T 2ysq_A 21 TMANRELAFKAGDVIKVLD 39 (81)
T ss_dssp CSSSSSCCCCTTCEEEEEE
T ss_pred CCCCCcCCCCCCCEEEEEE
Confidence 3567899999999999974
No 332
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A
Probab=27.08 E-value=35 Score=20.18 Aligned_cols=19 Identities=0% Similarity=-0.214 Sum_probs=15.6
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 36 ~~~~~eLs~~~Gd~i~v~~ 54 (86)
T 2oi3_A 36 AIHHEDLSFQKGDQMVVLE 54 (86)
T ss_dssp CSSSSCCCCCTTCEEEEEE
T ss_pred CCCCCcCcCCCCCEEEEEE
Confidence 3467799999999999864
No 333
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A
Probab=27.02 E-value=51 Score=21.34 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCEEEEEEeCCchH
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQL 47 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L 47 (104)
.-.|++.+.....+-||||-|.|-
T Consensus 30 ~~~l~L~N~s~~~vaFKVKTT~p~ 53 (128)
T 1z9l_A 30 TTNLKLQNPSDRKVCFKVKTTAPR 53 (128)
T ss_dssp EEEEEEECCSSSCEEEEEEESCGG
T ss_pred EEEEEEECCCCCeEEEEEECCCCC
Confidence 556888898889999999988873
No 334
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.01 E-value=24 Score=20.69 Aligned_cols=18 Identities=11% Similarity=-0.036 Sum_probs=15.5
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 22 ~~~~eLs~~~Gd~i~v~~ 39 (76)
T 2epd_A 22 RTAQELSFRRGDVLRLHE 39 (76)
T ss_dssp SSTTBCEECTTCEEEEEE
T ss_pred CCCCccCCCCCCEEEEEE
Confidence 467899999999999874
No 335
>3fcg_A F1 capsule-anchoring protein; beta barrel, beta strand swapping, cell membrane, cell outer membrane, cell projection, fimbrium, membrane; 2.85A {Yersinia pestis}
Probab=26.44 E-value=82 Score=19.94 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=21.4
Q ss_pred CCCCCCCCCcEEEEEEccCCCEEEEEEeC
Q 034095 15 DKKPVDQSAHINLKVKGQDGNEVFFRIKR 43 (104)
Q Consensus 15 ~~kp~~~~~~I~lkV~~~~g~~v~FkIK~ 43 (104)
+.-+......+.|.|.+.+|++.+|.+--
T Consensus 52 dl~~~~~~Gdl~V~v~eadG~~~~~~vp~ 80 (90)
T 3fcg_A 52 NLPLGGGSGELKVIIHESDGTKQVFTVPY 80 (90)
T ss_dssp CCC---CCEEEEEEEECTTSCEEEEEEEE
T ss_pred CCcccCCceeEEEEEEECCCCEEEEEECc
Confidence 34344567889999999999999998853
No 336
>2oyn_A Hypothetical protein MJ0056; structural genomics, unknown function, PSI-2, protein structure initiative; HET: CDP; 1.85A {Methanocaldococcus jannaschii DSM2661} SCOP: b.43.5.2 PDB: 2p3m_A 2vbs_A 2vbt_A* 2vbu_A* 2vbv_A*
Probab=26.38 E-value=29 Score=24.14 Aligned_cols=15 Identities=7% Similarity=-0.259 Sum_probs=13.2
Q ss_pred ccCCcCCceeeeeec
Q 034095 82 EVILLFCAFCSCKYG 96 (104)
Q Consensus 82 ~L~Medgdii~~~~~ 96 (104)
.|+++|||.|.|.+.
T Consensus 119 ~L~LkDGD~V~I~v~ 133 (146)
T 2oyn_A 119 QFNLKDGDVIKILIK 133 (146)
T ss_dssp HHTCCTTCEEEEEEE
T ss_pred hcCCCCCCEEEEEEe
Confidence 799999999988764
No 337
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=26.27 E-value=1.4e+02 Score=20.57 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=36.7
Q ss_pred EEeCCchHHHHHHHHHHHcC-Cc---------cceEEEEECCEecCCCCCccccCCcCCceeeeee
Q 034095 40 RIKRSTQLKKLMNAYCDRQS-VE---------LNSIAFLFDGRRLRGEQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 40 kIK~tt~L~kLm~aY~~~~g-~~---------~~~lrF~fdG~rI~~~~TP~~L~Medgdii~~~~ 95 (104)
.+.. +.+..|.+..+.+.. +. ...+.+..||+.+...+- .+--+.+||.|.++-
T Consensus 19 ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 19 ELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFP 82 (168)
T ss_dssp ECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEEC
T ss_pred EECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEEC
Confidence 3444 788888888877642 11 256789999999875321 223489999999863
No 338
>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.25 E-value=29 Score=20.24 Aligned_cols=16 Identities=0% Similarity=-0.330 Sum_probs=14.4
Q ss_pred ccccCCcCCceeeeee
Q 034095 80 PDEVILLFCAFCSCKY 95 (104)
Q Consensus 80 P~~L~Medgdii~~~~ 95 (104)
+.+|.+.-||+|.|+-
T Consensus 23 ~~eLs~~~Gd~i~vl~ 38 (75)
T 2egc_A 23 EETAGFQEGVSMEVLE 38 (75)
T ss_dssp SSSCCBCTTCEEEECE
T ss_pred CCcCCCCCCCEEEEEE
Confidence 7899999999999974
No 339
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=26.24 E-value=1.3e+02 Score=19.02 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=31.1
Q ss_pred EEEEccCCCEE-EEEEeCC--chHHHHHHHHHHHcCCccceEEEEE
Q 034095 27 LKVKGQDGNEV-FFRIKRS--TQLKKLMNAYCDRQSVELNSIAFLF 69 (104)
Q Consensus 27 lkV~~~~g~~v-~FkIK~t--t~L~kLm~aY~~~~g~~~~~lrF~f 69 (104)
|.|+++-+.++ +|.+.++ .++..++..-.+-..++...+...|
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y 52 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGY 52 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEE
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEE
Confidence 45556555565 9999866 6788888777777777766777777
No 340
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Probab=26.23 E-value=42 Score=18.32 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~ 35 (62)
T 3ngp_A 17 EKSPRELTVKKGDILTLLN 35 (62)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCCCCccCCCCCEEEEeE
Confidence 4578899999999999864
No 341
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=26.12 E-value=2.1e+02 Score=21.46 Aligned_cols=41 Identities=10% Similarity=0.271 Sum_probs=36.5
Q ss_pred CCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCC
Q 034095 20 DQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV 60 (104)
Q Consensus 20 ~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~ 60 (104)
+.-.++.++|-..||+.+.+.|.+++.-+-|.+..+.+.++
T Consensus 27 a~~~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~ 67 (281)
T 4gmv_A 27 AQVKKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC 67 (281)
T ss_dssp TSSCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC
T ss_pred cCcccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 44578899999999999999999999999999999988764
No 342
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=26.06 E-value=41 Score=20.66 Aligned_cols=15 Identities=13% Similarity=-0.006 Sum_probs=14.3
Q ss_pred ccccCCcCCceeeee
Q 034095 80 PDEVILLFCAFCSCK 94 (104)
Q Consensus 80 P~~L~Medgdii~~~ 94 (104)
+.+|.+.-||+|.|+
T Consensus 37 ~~eLsf~~Gd~i~v~ 51 (96)
T 1wie_A 37 EAELPLTAGKYLYVY 51 (96)
T ss_dssp TTBCCCCTTCEEEEE
T ss_pred CCeeeECCCCEEEEe
Confidence 889999999999998
No 343
>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}
Probab=25.83 E-value=36 Score=19.22 Aligned_cols=19 Identities=11% Similarity=-0.055 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 24 ~~~~~eLs~~~Gd~i~v~~ 42 (72)
T 4glm_A 24 ALEPNELDFEVGDKIRILA 42 (72)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCCCcCCCCCCCEEEEEE
Confidence 3567899999999999874
No 344
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}
Probab=25.74 E-value=39 Score=20.26 Aligned_cols=19 Identities=11% Similarity=-0.248 Sum_probs=15.8
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
...+.+|.+.-||+|.|+-
T Consensus 42 ~~~~~eLs~~~Gd~i~v~~ 60 (86)
T 2jxb_A 42 AQQDQELDIKKNERLWLLD 60 (86)
T ss_dssp CCSSSBCCCCTTEEEEEEE
T ss_pred CCCCCEeccCCCCEEEEEe
Confidence 3457899999999999974
No 345
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}
Probab=25.71 E-value=32 Score=19.61 Aligned_cols=16 Identities=6% Similarity=-0.118 Sum_probs=13.7
Q ss_pred ccccCCcCCceeeeee
Q 034095 80 PDEVILLFCAFCSCKY 95 (104)
Q Consensus 80 P~~L~Medgdii~~~~ 95 (104)
|.+|.+.-||+|.|+-
T Consensus 21 ~~eLsf~~Gd~i~v~~ 36 (70)
T 2vkn_A 21 AYEISFEQNEILQVSD 36 (70)
T ss_dssp TTBCCBCTTCEEEEEC
T ss_pred CCcccCCCCCEEEEEE
Confidence 5699999999999863
No 346
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.60 E-value=26 Score=20.61 Aligned_cols=18 Identities=11% Similarity=0.023 Sum_probs=15.2
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 29 ~~~~eLsf~~Gd~i~v~~ 46 (80)
T 2d8h_A 29 QQPGDLNFQAGDRITVIS 46 (80)
T ss_dssp SSTTBCEECTTCEEEEEE
T ss_pred CCCCeeeEcCCCEEEEeE
Confidence 456789999999999975
No 347
>1m11_3 Coat protein VP3; decay-accelerating factor, SCR, icosahedral virus, virus/receptor complex; 16.00A {Human echovirus 7} SCOP: i.6.1.1
Probab=25.28 E-value=1e+02 Score=22.49 Aligned_cols=49 Identities=18% Similarity=0.440 Sum_probs=31.1
Q ss_pred EEEEEEccCCCEE-EEEEeC-------CchHHHHHHHHHHHcCCccceEEEEECCEecC
Q 034095 25 INLKVKGQDGNEV-FFRIKR-------STQLKKLMNAYCDRQSVELNSIAFLFDGRRLR 75 (104)
Q Consensus 25 I~lkV~~~~g~~v-~FkIK~-------tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI~ 75 (104)
|.+...+..++.+ .|.+.+ +|.|+-|.+.|+...| .=.++|.|.|....
T Consensus 70 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~T~L~~ls~~f~~WrG--sl~~~f~~~gs~~~ 126 (238)
T 1m11_3 70 IEVNTGNHQGEKIFAFQMQPGLESVFKRTLMGEILNYYAHWSG--SIKLTFTFCGSAMA 126 (238)
T ss_pred EEeecCCCCCCEEEEEEccccccccccccHHHHHHHhhhheee--eEEEEEEEecCCCC
Confidence 4444444455555 565553 5789999999999987 11566666655433
No 348
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.14 E-value=41 Score=19.58 Aligned_cols=16 Identities=6% Similarity=-0.120 Sum_probs=14.5
Q ss_pred ccccCCcCCceeeeee
Q 034095 80 PDEVILLFCAFCSCKY 95 (104)
Q Consensus 80 P~~L~Medgdii~~~~ 95 (104)
+.+|.+.-||+|.|+-
T Consensus 28 ~~eLsf~~Gd~i~v~~ 43 (76)
T 2csi_A 28 EAELTFCTGDIITVFG 43 (76)
T ss_dssp TTSCCCCTTCEEEEES
T ss_pred CCcccCCCCCEEEEeE
Confidence 7899999999999974
No 349
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=25.11 E-value=1.4e+02 Score=19.17 Aligned_cols=40 Identities=13% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCc
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVE 61 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~ 61 (104)
..++.|||-..||+...+.|..+..-+-+.+.-+++.++.
T Consensus 7 ~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~ 46 (100)
T 1wgr_A 7 GRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHAL 46 (100)
T ss_dssp CSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCC
T ss_pred CCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 4567899999999999999999999999999999998754
No 350
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Probab=24.50 E-value=36 Score=21.97 Aligned_cols=19 Identities=16% Similarity=-0.025 Sum_probs=16.4
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 55 a~~~dELsf~~GDiI~Vl~ 73 (115)
T 1bb9_A 55 ATDTDELQLKAGDVVLVIP 73 (115)
T ss_dssp CSSTTBCCBCTTCEEEEEC
T ss_pred CCCCCccCcCCCCEEEEee
Confidence 3567899999999999986
No 351
>3c12_A FLGD, flagellar protein; HOOK capping, IG-like domain, FN-III domain, tudor-like domain, flagellar biogenesis, flagellum; 2.51A {Xanthomonas campestris PV}
Probab=24.05 E-value=1.5e+02 Score=19.27 Aligned_cols=37 Identities=16% Similarity=0.433 Sum_probs=27.0
Q ss_pred CCcEEEEEEccCCCEE-EEEEeCCchHHHHHHHHHHHcCCccceEEEEECCEec
Q 034095 22 SAHINLKVKGQDGNEV-FFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRL 74 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v-~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~rI 74 (104)
...++|.|.+.+|..| ++.+. ..+....+|.+||..=
T Consensus 38 a~~v~v~I~d~~G~~V~t~~~~----------------~~~aG~~~~~WDg~d~ 75 (138)
T 3c12_A 38 AGFVNFEITDANGTFVKQLSVP----------------ASAAGEVSFAWDGTDA 75 (138)
T ss_dssp SEEEEEEEECSSCCEEEEEEEE----------------ESSSEEEEEEECSBCT
T ss_pred CCEEEEEEEeCCCCEEEEEEcC----------------CcCCceEEEEECCcCC
Confidence 4678999999999876 44443 2456678999998753
No 352
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=24.03 E-value=35 Score=22.46 Aligned_cols=19 Identities=11% Similarity=0.169 Sum_probs=13.6
Q ss_pred ECCEecCCCCCccccCCcCCceeee
Q 034095 69 FDGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 69 fdG~rI~~~~TP~~L~Medgdii~~ 93 (104)
.||++|.. ..|.+||+|.+
T Consensus 86 vNg~~i~~------~~L~~GD~I~i 104 (131)
T 3hx1_A 86 INGKKVQE------HIIQTGDEIVM 104 (131)
T ss_dssp ETTEEESE------EECCTTCEEEC
T ss_pred ECCEEeEe------EECCCCCEEEE
Confidence 36666652 77999999864
No 353
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=23.91 E-value=29 Score=20.14 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=14.9
Q ss_pred CCccccCCcCCceeeee
Q 034095 78 QTPDEVILLFCAFCSCK 94 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~ 94 (104)
+.+.+|.+.-||+|.|+
T Consensus 22 ~~~~eLs~~~Gd~i~v~ 38 (76)
T 1ujy_A 22 TNEDELSVCKGDIIYVT 38 (76)
T ss_dssp SSTTSCCBCSSCCEEES
T ss_pred CCCCcccCCCCCEEEEE
Confidence 46789999999999986
No 354
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=23.90 E-value=95 Score=16.82 Aligned_cols=24 Identities=4% Similarity=0.117 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCccceEEEEEC
Q 034095 47 LKKLMNAYCDRQSVELNSIAFLFD 70 (104)
Q Consensus 47 L~kLm~aY~~~~g~~~~~lrF~fd 70 (104)
.+.|.+++++..|++.+.+...|.
T Consensus 21 ~~~lt~~l~~~lg~~~~~v~V~i~ 44 (64)
T 3abf_A 21 VRRLTEMASRLLGEPYEEVRVILY 44 (64)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred HHHHHHHHHHHhCCCcccEEEEEE
Confidence 566778888889999988887664
No 355
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A
Probab=23.84 E-value=23 Score=20.76 Aligned_cols=19 Identities=16% Similarity=-0.019 Sum_probs=15.5
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 31 ~~~~~eLs~~~Gd~i~v~~ 49 (77)
T 1awj_A 31 TNDPQELALRCDEEYYLLD 49 (77)
T ss_dssp CCCTTSCCBCSSSCCSCCC
T ss_pred CCCcCCcCCCCCCEEEEEE
Confidence 3467799999999999873
No 356
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=23.71 E-value=22 Score=22.99 Aligned_cols=44 Identities=7% Similarity=0.089 Sum_probs=24.5
Q ss_pred HHHHHcCCcc-ceEEEEE--C-CEecCCCCCccccCCcCCceeeeeec
Q 034095 53 AYCDRQSVEL-NSIAFLF--D-GRRLRGEQTPDEVILLFCAFCSCKYG 96 (104)
Q Consensus 53 aY~~~~g~~~-~~lrF~f--d-G~rI~~~~TP~~L~Medgdii~~~~~ 96 (104)
-+|.+..-+. +.+++-. . .-+.++..-+.+..|+|||||.+.-.
T Consensus 40 Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~ 87 (93)
T 2eki_A 40 DFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 87 (93)
T ss_dssp HHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEEC
T ss_pred HHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeC
Confidence 3555544333 4455422 1 12223333457788999999988754
No 357
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=23.69 E-value=3.2e+02 Score=22.73 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=49.2
Q ss_pred CCCCCCCcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc--ceEEEEECCEec--C--CCCCccccCCc
Q 034095 17 KPVDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL--NSIAFLFDGRRL--R--GEQTPDEVILL 86 (104)
Q Consensus 17 kp~~~~~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~--~~lrF~fdG~rI--~--~~~TP~~L~Me 86 (104)
.|.-+++.+.++|--.|.+..++++..++.-+.+...-+++.|... .-+.....|+++ . ....|..+++.
T Consensus 345 ~~~~~~d~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~ 420 (694)
T 3cf6_E 345 QPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEGLIIVKMNSGGEKVVLKSNDVSVFTTLTIN 420 (694)
T ss_dssp CCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCSCEEEEEECTTSCEEECCTTCBCCGGGSCTT
T ss_pred CCCCCCCceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCcccceEEEEeecCcccccCccccccccccccc
Confidence 3444567889999999999999999999999999999999988633 222333345554 2 23355555553
No 358
>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=23.56 E-value=41 Score=19.59 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.0
Q ss_pred CCcc-ccCCcCCceeeeee
Q 034095 78 QTPD-EVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~-~L~Medgdii~~~~ 95 (104)
+.+. +|.+.-||+|.|+-
T Consensus 26 ~~~~~eLs~~~Gd~i~v~~ 44 (80)
T 2v1r_A 26 ENPEMEVALKKGDLMAILS 44 (80)
T ss_dssp SSTTTBCCBCTTCEEEEEE
T ss_pred CCCCCEecCCCCCEEEEEE
Confidence 4566 99999999999875
No 359
>4hti_A Receptor-type tyrosine-protein phosphatase N2; phogrin, IA-2BETA, protein-tyrosine phosphatase, transmembra protein, diabetes, autoimmunity; 1.95A {Homo sapiens} PDB: 4htj_A
Probab=23.51 E-value=68 Score=20.89 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=17.6
Q ss_pred CCcEEEEEEccCCCEEEEEEeCCch
Q 034095 22 SAHINLKVKGQDGNEVFFRIKRSTQ 46 (104)
Q Consensus 22 ~~~I~lkV~~~~g~~v~FkIK~tt~ 46 (104)
+..+.|+| .|..++|||.++.+
T Consensus 42 ~~F~~isV---~g~aVTFrV~~N~~ 63 (99)
T 4hti_A 42 SAFADVEV---LGPAVTFKVSANVQ 63 (99)
T ss_dssp GGEEEEEE---ETTEEEEEECCCTT
T ss_pred hheeeeee---cCceEEEEeccCCC
Confidence 45788888 67899999988764
No 360
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=23.45 E-value=42 Score=27.20 Aligned_cols=21 Identities=29% Similarity=0.687 Sum_probs=18.2
Q ss_pred CCchHHHHHHHHHHHcCCccc
Q 034095 43 RSTQLKKLMNAYCDRQSVELN 63 (104)
Q Consensus 43 ~tt~L~kLm~aY~~~~g~~~~ 63 (104)
++-||..+.+.||.+.++|..
T Consensus 385 k~~p~~~vw~~~c~~~~vp~~ 405 (424)
T 3p14_A 385 KTYPLGAIWNEYCERMNVPIK 405 (424)
T ss_dssp GGSSHHHHHHHHHHHTTCCCT
T ss_pred hcCChHHHHHHHHHhcCCCCc
Confidence 467999999999999999864
No 361
>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}
Probab=23.39 E-value=33 Score=19.65 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=15.9
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 22 ~~~~~eLs~~~Gd~i~v~~ 40 (74)
T 2m0y_A 22 ARGADELSLQIGDTVHILE 40 (74)
T ss_dssp CCSSSBCCEETTEEEEEEE
T ss_pred CCCcCcccCCCCCEEEEEE
Confidence 3568899999999999874
No 362
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=23.23 E-value=52 Score=20.18 Aligned_cols=20 Identities=10% Similarity=-0.071 Sum_probs=14.0
Q ss_pred EECCEecCCCCCccccCCcCCceeee
Q 034095 68 LFDGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 68 ~fdG~rI~~~~TP~~L~Medgdii~~ 93 (104)
+.||++|. ...|.+||+|.+
T Consensus 68 ~vng~~i~------~~~L~~gd~i~i 87 (100)
T 3po8_A 68 TVNNAPVQ------EWQLADGDVIRL 87 (100)
T ss_dssp EETTEECS------EEECCTTCEEEE
T ss_pred EECCEECc------eEECCCCCEEEE
Confidence 34777774 356899999864
No 363
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=23.17 E-value=44 Score=18.19 Aligned_cols=27 Identities=7% Similarity=0.113 Sum_probs=21.1
Q ss_pred EEEEEeCCchHHHHHHHHHHHcCCccc
Q 034095 37 VFFRIKRSTQLKKLMNAYCDRQSVELN 63 (104)
Q Consensus 37 v~FkIK~tt~L~kLm~aY~~~~g~~~~ 63 (104)
..+.|+-+..-..+++.||+..|++.+
T Consensus 16 ~~i~vRlt~eE~~~l~~~A~~~g~s~S 42 (51)
T 2ba3_A 16 VVRTLRFSPVEDETIRKKAEDSGLTVS 42 (51)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHTCCHH
T ss_pred eeEEEEECHHHHHHHHHHHHHhCCCHH
Confidence 355666677788899999999998754
No 364
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Probab=23.14 E-value=28 Score=19.97 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=15.7
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 17 ~~~~~eLs~~~Gd~i~v~~ 35 (71)
T 1hsq_A 17 AQREDELTFIKSAIIQNVE 35 (71)
T ss_dssp CSSSSSCCCCTTCCCBSCC
T ss_pred cCCCCccCCCCCCEEEEEE
Confidence 3567899999999998863
No 365
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2
Probab=23.01 E-value=64 Score=21.85 Aligned_cols=24 Identities=13% Similarity=0.202 Sum_probs=20.3
Q ss_pred cEEEEEEccCCCEEEEEEeCCchH
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQL 47 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L 47 (104)
.-.|++.+.....|-||||-|.+-
T Consensus 38 ~~~l~L~N~s~~~VaFKVKTT~p~ 61 (152)
T 1wic_A 38 KTLIVLTNVTKNIVAFKVRTTAPE 61 (152)
T ss_dssp CEEEEEEBCSSSCEEEEEEESCTT
T ss_pred EEEEEEEcCCCCeEEEEEECCCCC
Confidence 467888998889999999988773
No 366
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=22.96 E-value=1.7e+02 Score=19.41 Aligned_cols=33 Identities=3% Similarity=0.126 Sum_probs=28.8
Q ss_pred CCCEEEEEEeCCchHHHHHHHHHHHcCCccceE
Q 034095 33 DGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSI 65 (104)
Q Consensus 33 ~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~l 65 (104)
.|+.+.+++.+...|-.=.+.+|++.++....+
T Consensus 11 ~g~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v 43 (147)
T 3hwu_A 11 TPTGYLMVLRHGDNVLQNLEQLARDEHIPSASF 43 (147)
T ss_dssp ETTEEEEEEETTCBHHHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEECCCChHHHHHHHHHHHcCCCEEEE
Confidence 378889999999999999999999999876544
No 367
>1d8w_A L-rhamnose isomerase; beta-alpha-8-barrels, aldose-ketose isomerization, hydride shift; 1.60A {Escherichia coli} SCOP: c.1.15.2 PDB: 1de5_A* 1de6_A*
Probab=22.93 E-value=49 Score=26.89 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=18.3
Q ss_pred CCchHHHHHHHHHHHcCCccc
Q 034095 43 RSTQLKKLMNAYCDRQSVELN 63 (104)
Q Consensus 43 ~tt~L~kLm~aY~~~~g~~~~ 63 (104)
++-|+..+.+.||.+.++|..
T Consensus 387 k~~P~~avwd~~c~~~~vp~~ 407 (426)
T 1d8w_A 387 KSLPWQAVWEMYCQRHDTPAG 407 (426)
T ss_dssp TTSCHHHHHHHHHHHTTCCCS
T ss_pred hcCChHHHHHHHHHHcCCCCc
Confidence 467999999999999999864
No 368
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=22.89 E-value=42 Score=20.55 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=15.2
Q ss_pred CCccccCCcCCceeeeee
Q 034095 78 QTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~~ 95 (104)
+.+.+|.+.-||+|.|+-
T Consensus 46 ~~~~eLs~~~Gd~i~v~~ 63 (98)
T 1udl_A 46 NNEDELSFSKGQLINVMN 63 (98)
T ss_dssp SSTTSCCCCTTCEEEECB
T ss_pred CCCCccCCcCCCEEEEEE
Confidence 457799999999999864
No 369
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=22.77 E-value=20 Score=23.66 Aligned_cols=18 Identities=0% Similarity=-0.228 Sum_probs=15.3
Q ss_pred CCCccccCCcCCceeeee
Q 034095 77 EQTPDEVILLFCAFCSCK 94 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~ 94 (104)
.-.+.+|.++-|++++|.
T Consensus 52 k~g~~DLpfkkGE~LeVI 69 (102)
T 1ri9_A 52 KWGTRDLQVKPGESLEVI 69 (102)
T ss_dssp CCCTTBCCCCTTCBCEEE
T ss_pred cCCcccCCcCCCCEEEEE
Confidence 445889999999999985
No 370
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=22.69 E-value=64 Score=21.17 Aligned_cols=11 Identities=0% Similarity=-0.182 Sum_probs=8.4
Q ss_pred cCCcCCceeee
Q 034095 83 VILLFCAFCSC 93 (104)
Q Consensus 83 L~Medgdii~~ 93 (104)
..|.+||+|-+
T Consensus 109 ~~L~~GD~I~~ 119 (130)
T 4h87_A 109 CRVHVGHVVRF 119 (130)
T ss_dssp EECCTTCEEEE
T ss_pred eECCCCCEEEE
Confidence 46889999853
No 371
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.65 E-value=1e+02 Score=20.51 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=20.2
Q ss_pred cEEEEEEccCCCEEEEEEeCCchH
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQL 47 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L 47 (104)
.-.|++.+.....|-||||-|.|-
T Consensus 34 ~~~l~L~N~s~~~VaFKVKTT~p~ 57 (147)
T 2cri_A 34 TTNLKLQNPSDRKVCFKVKTTAPR 57 (147)
T ss_dssp CEEEEEECCSSSCEEEEEEESCTT
T ss_pred EEEEEEECCCCCcEEEEEECCCCc
Confidence 567888898889999999988764
No 372
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}
Probab=22.50 E-value=35 Score=21.06 Aligned_cols=17 Identities=24% Similarity=0.159 Sum_probs=15.2
Q ss_pred CCccccCCcCCceeeee
Q 034095 78 QTPDEVILLFCAFCSCK 94 (104)
Q Consensus 78 ~TP~~L~Medgdii~~~ 94 (104)
+.+.+|.+.-||+|.|+
T Consensus 30 ~~~~eLsf~~Gd~i~V~ 46 (92)
T 2o2o_A 30 QNDDELELKVGDIIEVV 46 (92)
T ss_dssp CSSSCCCBCSSCEEECC
T ss_pred CCCccccccCCCEEEEe
Confidence 56789999999999987
No 373
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}
Probab=22.31 E-value=43 Score=21.63 Aligned_cols=19 Identities=5% Similarity=-0.027 Sum_probs=16.2
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 70 a~~~~eLsf~~Gd~i~vl~ 88 (119)
T 2rqr_A 70 GSGAPQLSLQIGDVVRIQE 88 (119)
T ss_dssp CCSTTBCCBCTTCEEEEEE
T ss_pred CCCCCcccCcCCCEEEEEE
Confidence 4568899999999999964
No 374
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.22 E-value=47 Score=19.31 Aligned_cols=16 Identities=6% Similarity=-0.191 Sum_probs=14.2
Q ss_pred ccccCCcCCceeeeee
Q 034095 80 PDEVILLFCAFCSCKY 95 (104)
Q Consensus 80 P~~L~Medgdii~~~~ 95 (104)
+.+|.+.-||+|.|+-
T Consensus 28 ~~eLsf~~Gd~i~v~~ 43 (75)
T 2ege_A 28 KGRLALRAGDVVMVYG 43 (75)
T ss_dssp CCBCCBCTTCEEEEES
T ss_pred CCcceECCCCEEEEeE
Confidence 6899999999999973
No 375
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=22.07 E-value=1.9e+02 Score=19.45 Aligned_cols=65 Identities=6% Similarity=0.109 Sum_probs=51.3
Q ss_pred CEEEEEEeCCchHHHHHHH-----HHHH---cCCccceEEEEECCEecCC--CCCccccCCcCCceeeeeecccc
Q 034095 35 NEVFFRIKRSTQLKKLMNA-----YCDR---QSVELNSIAFLFDGRRLRG--EQTPDEVILLFCAFCSCKYGRLN 99 (104)
Q Consensus 35 ~~v~FkIK~tt~L~kLm~a-----Y~~~---~g~~~~~lrF~fdG~rI~~--~~TP~~L~Medgdii~~~~~~~~ 99 (104)
+-.-|.+.+.++|+.|.+. |+.. ..++.+.+..+.+|+...+ +.|-++.|+..=+.|-..---|+
T Consensus 38 ap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPgL~ 112 (119)
T 3u52_E 38 APFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPGLK 112 (119)
T ss_dssp SCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTTCC
T ss_pred CceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCCcC
Confidence 3467999999999999864 4443 3578899999999999997 77888888888888876654444
No 376
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=21.90 E-value=61 Score=21.58 Aligned_cols=21 Identities=5% Similarity=-0.214 Sum_probs=13.5
Q ss_pred CCEecCCCCCccccCCcCCceeee
Q 034095 70 DGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 70 dG~rI~~~~TP~~L~Medgdii~~ 93 (104)
||++|... ....|.+||+|.+
T Consensus 108 Ng~~i~~~---~~~~L~~GD~I~l 128 (149)
T 1gxc_A 108 NTELVGKG---KRRPLNNNSEIAL 128 (149)
T ss_dssp TTEECCTT---CEEECCTTEEEEE
T ss_pred CCEECCCC---CeEECCCCCEEEE
Confidence 45555432 3567899999865
No 377
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=21.53 E-value=98 Score=23.59 Aligned_cols=44 Identities=9% Similarity=0.149 Sum_probs=33.7
Q ss_pred EEEEEccCCC----EEEEEEeCCchHHHHHHHHHHHcCCcc-ceEEEEE
Q 034095 26 NLKVKGQDGN----EVFFRIKRSTQLKKLMNAYCDRQSVEL-NSIAFLF 69 (104)
Q Consensus 26 ~lkV~~~~g~----~v~FkIK~tt~L~kLm~aY~~~~g~~~-~~lrF~f 69 (104)
.++|.-.+|. ...|++..+++-+.|++.-|++.|+.. +.|-+.+
T Consensus 9 ~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~ 57 (375)
T 2al6_A 9 VFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRL 57 (375)
T ss_dssp EECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEE
T ss_pred eEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEE
Confidence 3456666776 889999999999999999999999732 3344443
No 378
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}
Probab=21.35 E-value=35 Score=20.68 Aligned_cols=19 Identities=5% Similarity=0.023 Sum_probs=15.6
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
...+.+|.+.-||+|.|+-
T Consensus 28 a~~~~eLsf~~Gd~i~v~~ 46 (93)
T 1wxu_A 28 AVSDEEISFRAGDMLNLAL 46 (93)
T ss_dssp CSSSSBCCBCSSCBCEECC
T ss_pred CCCCCccCcCCCCEEEEEE
Confidence 4567799999999998863
No 379
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=21.25 E-value=82 Score=21.79 Aligned_cols=56 Identities=14% Similarity=0.185 Sum_probs=39.4
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc-------ceEEEEECCEecCCCCCccc
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-------NSIAFLFDGRRLRGEQTPDE 82 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~-------~~lrF~fdG~rI~~~~TP~~ 82 (104)
.|++.| +|..+.+.+.+.++|-........-.|... .+...++||+.+..-.||..
T Consensus 5 ~i~~~v---NG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~ 67 (163)
T 1ffv_A 5 IITVNV---NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAV 67 (163)
T ss_dssp EEEEEE---TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGG
T ss_pred eEEEEE---CCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEECCcEecchHhhHH
Confidence 466666 788888899999888776654322122221 45578889999999999986
No 380
>1k3e_A CEST; chaperone, secretion, type III, intimin receptor; 2.80A {Escherichia coli} SCOP: d.198.1.1
Probab=21.21 E-value=86 Score=21.87 Aligned_cols=29 Identities=14% Similarity=0.297 Sum_probs=24.5
Q ss_pred CchHHHHHHHHHHHcCCcc------ceEEEEECCE
Q 034095 44 STQLKKLMNAYCDRQSVEL------NSIAFLFDGR 72 (104)
Q Consensus 44 tt~L~kLm~aY~~~~g~~~------~~lrF~fdG~ 72 (104)
+.+...|++.+|++.|+|. +...|.+|+.
T Consensus 2 ~~~~e~LL~efg~~lGLp~L~fDeng~C~L~IDd~ 36 (156)
T 1k3e_A 2 SSRSELLLEKFAEKIGIGSISFNENRLCSFAIDEI 36 (156)
T ss_dssp CCHHHHHHHHHHHHHSCCCCCCCTTSCCEEEECCC
T ss_pred chHHHHHHHHHHHHcCCCCcccCCCCcEEEEECCe
Confidence 5678999999999999983 7788888875
No 381
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=21.05 E-value=78 Score=20.51 Aligned_cols=28 Identities=7% Similarity=0.121 Sum_probs=18.1
Q ss_pred HHHcCCccceEEEEECCEecCCCCCcccc
Q 034095 55 CDRQSVELNSIAFLFDGRRLRGEQTPDEV 83 (104)
Q Consensus 55 ~~~~g~~~~~lrF~fdG~rI~~~~TP~~L 83 (104)
++..|+. ++=.|++||+.+.+.+++++|
T Consensus 142 a~~~gv~-gtPt~vvng~~~~G~~~~~~l 169 (175)
T 1z6m_A 142 ANAAHIQ-FVPTIIIGEYIFDESVTEEEL 169 (175)
T ss_dssp HHHHTCC-SSCEEEETTEEECTTCCHHHH
T ss_pred HHHcCCC-CcCeEEECCEEccCCCCHHHH
Confidence 4444442 222488899999888777665
No 382
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=20.91 E-value=6 Score=24.70 Aligned_cols=15 Identities=7% Similarity=-0.228 Sum_probs=12.0
Q ss_pred ccccCCcCCceeeee
Q 034095 80 PDEVILLFCAFCSCK 94 (104)
Q Consensus 80 P~~L~Medgdii~~~ 94 (104)
-.+||+..||||-|+
T Consensus 44 Lr~LGi~eGDIIrVm 58 (72)
T 3idw_A 44 LRTLGLREGDIVRVM 58 (72)
T ss_dssp HHHTTCCHHHHHHHH
T ss_pred HHHcCCchhhHHHHH
Confidence 357899999999763
No 383
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=20.79 E-value=61 Score=22.12 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=15.4
Q ss_pred ECCEecCCCCCccccCCcCCceeee
Q 034095 69 FDGRRLRGEQTPDEVILLFCAFCSC 93 (104)
Q Consensus 69 fdG~rI~~~~TP~~L~Medgdii~~ 93 (104)
.||++|.... ...|.+||+|-+
T Consensus 121 VNg~ri~~~~---~~~L~~GD~I~~ 142 (158)
T 3els_A 121 LNNVVIPGAR---YIELRSGDVLTL 142 (158)
T ss_dssp ETTEECCTTC---CEECCTTEEEES
T ss_pred ECCEEcCCCc---eEEcCCCCEEEE
Confidence 4777776543 466899999864
No 384
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Probab=20.57 E-value=48 Score=21.21 Aligned_cols=19 Identities=0% Similarity=-0.309 Sum_probs=16.1
Q ss_pred CCCccccCCcCCceeeeee
Q 034095 77 EQTPDEVILLFCAFCSCKY 95 (104)
Q Consensus 77 ~~TP~~L~Medgdii~~~~ 95 (104)
.+.+.+|.+.-||+|.|+-
T Consensus 33 a~~~~ELsf~~GDiI~Vl~ 51 (108)
T 1i1j_A 33 APDCRFLTIHRGQVVYVFS 51 (108)
T ss_dssp CSSTTBCCBCTTCEEEEEE
T ss_pred CCCCCccccCCCCEEEEEE
Confidence 4578899999999999973
No 385
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=20.41 E-value=1.7e+02 Score=18.46 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=38.2
Q ss_pred CcEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCccceEEEEECCE
Q 034095 23 AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGR 72 (104)
Q Consensus 23 ~~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~~~lrF~fdG~ 72 (104)
..+.||+--++ .-+..+|..+..|+-|.+.-++|..+. +...|.|.++
T Consensus 11 ~~~KVK~yy~D-DIiAIrvP~di~~~~L~dKi~~RLk~~-~~~l~~ykde 58 (85)
T 1ip9_A 11 KTTKIKFYYKD-DIFALMLKGDTTYKELRSKIAPRIDTD-NFKLQTKLFD 58 (85)
T ss_dssp CCEEEEECBTT-CCEEEEECSCCCHHHHHHHHHHHHTSS-CEEEEECCSS
T ss_pred CceEEEEEecC-cEEEEECCCCCCHHHHHHHHHHHhccc-ceEEEEecCC
Confidence 56788886654 577999999999999999999999883 5556666655
No 386
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=20.32 E-value=85 Score=21.78 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=39.1
Q ss_pred cEEEEEEccCCCEEEEEEeCCchHHHHHHHHHHHcCCcc-------ceEEEEECCEecCCCCCccc
Q 034095 24 HINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVEL-------NSIAFLFDGRRLRGEQTPDE 82 (104)
Q Consensus 24 ~I~lkV~~~~g~~v~FkIK~tt~L~kLm~aY~~~~g~~~-------~~lrF~fdG~rI~~~~TP~~ 82 (104)
.|++.| +|..+.+.+.+.++|-........-.|... .+...++||+.+..-.||..
T Consensus 5 ~i~~~v---NG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~vdG~~v~SC~~~~~ 67 (166)
T 1n62_A 5 HIELTI---NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAV 67 (166)
T ss_dssp EEEEEE---TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGG
T ss_pred eEEEEE---CCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEECCcEEechhhhHH
Confidence 466666 788888889999888776554321112221 45568889999999999985
Done!