Query 034096
Match_columns 104
No_of_seqs 105 out of 1043
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:30:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034096.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034096hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emg_A Probable U6 snRNA-assoc 99.9 2.4E-24 8.2E-29 141.7 9.2 88 15-103 5-92 (93)
2 1b34_B Protein (small nuclear 99.9 2.7E-24 9.3E-29 146.6 8.7 88 17-104 25-114 (118)
3 3bw1_A SMX4 protein, U6 snRNA- 99.9 7.2E-24 2.5E-28 139.9 10.3 81 17-104 8-88 (96)
4 4emk_A U6 snRNA-associated SM- 99.9 1.7E-23 5.7E-28 138.2 10.8 77 15-104 16-92 (94)
5 1ljo_A Archaeal SM-like protei 99.9 3.2E-23 1.1E-27 131.4 9.6 73 17-103 3-76 (77)
6 1h64_1 SnRNP SM-like protein; 99.9 4.3E-23 1.5E-27 130.1 9.8 71 19-103 4-74 (75)
7 1i4k_A Putative snRNP SM-like 99.9 6.4E-23 2.2E-27 129.8 9.7 71 19-103 4-74 (77)
8 1th7_A SnRNP-2, small nuclear 99.9 9.9E-23 3.4E-27 130.3 10.2 71 19-103 9-79 (81)
9 1mgq_A SM-like protein; LSM, R 99.9 6.1E-23 2.1E-27 132.1 9.2 74 14-101 10-83 (83)
10 1d3b_B Protein (small nuclear 99.9 4.7E-23 1.6E-27 134.2 8.2 78 22-103 7-84 (91)
11 1i8f_A Putative snRNP SM-like 99.9 1E-22 3.5E-27 130.4 9.5 75 14-103 6-80 (81)
12 2fwk_A U6 snRNA-associated SM- 99.9 2.3E-23 7.8E-28 142.6 6.9 89 16-104 25-114 (121)
13 4emk_B U6 snRNA-associated SM- 99.9 5.7E-23 1.9E-27 129.9 8.2 71 19-103 4-74 (75)
14 3s6n_G Small nuclear ribonucle 99.9 7.3E-23 2.5E-27 129.8 8.4 68 22-103 7-74 (76)
15 3s6n_E Small nuclear ribonucle 99.9 3.1E-23 1.1E-27 136.4 6.6 77 14-103 11-91 (92)
16 4emk_C U6 snRNA-associated SM- 99.9 1.6E-22 5.6E-27 137.3 9.5 76 21-103 25-100 (113)
17 1n9r_A SMF, small nuclear ribo 99.9 1.8E-22 6.2E-27 132.8 8.5 76 14-103 16-92 (93)
18 3s6n_F Small nuclear ribonucle 99.9 4.2E-22 1.4E-26 129.2 10.1 71 19-103 6-76 (86)
19 1d3b_A Protein (small nuclear 99.9 6.6E-22 2.3E-26 125.2 9.7 73 17-103 3-75 (75)
20 3pgw_B SM B; protein-RNA compl 99.9 8.2E-22 2.8E-26 147.7 10.2 77 22-102 7-83 (231)
21 1b34_A Protein (small nuclear 99.9 2.6E-21 8.9E-26 132.1 9.5 72 18-103 1-72 (119)
22 4emh_A Probable U6 snRNA-assoc 99.8 4.9E-21 1.7E-25 128.6 8.5 72 19-103 16-87 (105)
23 1m5q_A SMAP3, small nuclear ri 99.8 8.7E-20 3E-24 126.6 8.0 65 21-103 2-66 (130)
24 2y9a_D Small nuclear ribonucle 99.8 1.6E-19 5.4E-24 124.7 8.5 73 17-103 3-75 (126)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.4 1.4E-06 4.8E-11 56.3 8.3 58 23-100 11-69 (86)
26 1kq1_A HFQ, HOST factor for Q 97.0 0.0015 5E-08 41.2 5.3 35 23-58 11-47 (77)
27 2ylb_A Protein HFQ; RNA-bindin 97.0 0.0013 4.4E-08 41.1 5.0 30 29-59 21-50 (74)
28 2qtx_A Uncharacterized protein 96.9 0.0017 5.7E-08 40.4 5.0 30 28-58 24-53 (71)
29 3ahu_A Protein HFQ; SM-like mo 96.9 0.0016 5.5E-08 41.2 5.0 29 29-58 23-51 (78)
30 1u1s_A HFQ protein; SM-like ba 96.8 0.0017 5.9E-08 41.4 4.7 30 29-59 19-48 (82)
31 2y90_A Protein HFQ; RNA-bindin 96.8 0.0016 5.4E-08 43.2 4.3 31 29-60 21-51 (104)
32 3sb2_A Protein HFQ; SM-like, R 96.8 0.0021 7.3E-08 40.7 4.7 29 29-58 20-48 (79)
33 3hfo_A SSR3341 protein; HFQ, S 96.4 0.01 3.6E-07 36.7 5.8 49 9-60 3-51 (70)
34 3hfn_A ASL2047 protein; HFQ, S 95.9 0.016 5.5E-07 36.0 5.1 50 9-61 5-54 (72)
35 1ycy_A Conserved hypothetical 94.4 0.13 4.3E-06 31.4 5.6 44 21-65 8-51 (71)
36 1y96_B Gemin7, SIP3, GEM-assoc 92.6 1 3.5E-05 28.6 7.8 63 21-102 21-84 (85)
37 4a53_A EDC3; RNA binding prote 91.4 0.3 1E-05 33.2 4.5 38 24-62 7-46 (125)
38 3rux_A BIRA bifunctional prote 86.6 0.97 3.3E-05 33.6 4.8 34 27-60 222-255 (270)
39 1ib8_A Conserved protein SP14. 86.4 0.7 2.4E-05 32.1 3.7 36 22-58 97-136 (164)
40 2fb7_A SM-like protein, LSM-14 85.2 5.7 0.0002 25.6 7.7 74 23-101 13-87 (95)
41 2vxe_A CG10686-PA; EDC3, CAR-1 83.8 6.4 0.00022 25.0 9.7 71 26-101 10-81 (88)
42 2vc8_A Enhancer of mRNA-decapp 81.7 2.9 9.9E-05 26.4 4.7 37 25-61 5-43 (84)
43 2eay_A Biotin [acetyl-COA-carb 70.5 2.9 9.9E-05 30.1 2.8 32 26-59 185-216 (233)
44 2ej9_A Putative biotin ligase; 67.7 8.7 0.0003 27.6 4.9 32 27-59 190-221 (237)
45 1bia_A BIRA bifunctional prote 64.3 10 0.00035 28.3 4.8 33 26-59 270-302 (321)
46 2dxu_A Biotin--[acetyl-COA-car 63.6 5.9 0.0002 28.6 3.3 30 28-59 188-217 (235)
47 2xk0_A Polycomb protein PCL; t 62.5 17 0.00057 22.1 4.6 39 28-66 18-57 (69)
48 3rkx_A Biotin-[acetyl-COA-carb 60.9 10 0.00036 28.6 4.4 32 27-59 277-308 (323)
49 2e12_A SM-like motif, hypothet 59.4 9.7 0.00033 24.5 3.3 18 29-46 28-45 (101)
50 3bfm_A Biotin protein ligase-l 56.5 16 0.00056 26.0 4.6 29 26-59 191-219 (235)
51 3fb9_A Uncharacterized protein 55.8 21 0.00073 22.6 4.5 29 20-48 16-48 (90)
52 4a8c_A Periplasmic PH-dependen 53.9 17 0.00059 28.2 4.6 31 30-60 88-118 (436)
53 1ky9_A Protease DO, DEGP, HTRA 52.6 17 0.00058 28.5 4.5 38 21-60 104-141 (448)
54 1x4r_A PARP14 protein; WWE dom 45.6 1.4 4.6E-05 28.7 -2.5 19 43-61 34-52 (99)
55 3stj_A Protease DEGQ; serine p 43.2 27 0.00093 26.3 4.1 38 21-60 81-118 (345)
56 3pv2_A DEGQ; trypsin fold, PDZ 40.4 24 0.00083 27.6 3.6 38 21-60 95-132 (451)
57 3sti_A Protease DEGQ; serine p 36.8 36 0.0012 24.4 3.8 31 30-60 88-118 (245)
58 3lgi_A Protease DEGS; stress-s 36.2 47 0.0016 23.2 4.3 38 21-60 70-107 (237)
59 1te0_A Protease DEGS; two doma 35.4 46 0.0016 24.4 4.3 38 21-60 59-96 (318)
60 1y8t_A Hypothetical protein RV 35.3 42 0.0014 24.6 4.0 32 30-61 64-95 (324)
61 1nvp_D Transcription initiatio 34.8 39 0.0013 22.0 3.3 26 38-63 53-81 (108)
62 1lcy_A HTRA2 serine protease; 34.5 48 0.0016 24.4 4.3 40 19-60 62-101 (325)
63 3tjo_A Serine protease HTRA1; 33.7 54 0.0019 22.9 4.3 33 29-61 86-118 (231)
64 3tee_A Flagella basal BODY P-r 33.6 27 0.00093 25.0 2.6 24 25-48 167-190 (219)
65 2rm4_A CG6311-PB, DM EDC3; enh 33.4 97 0.0033 20.0 5.4 38 25-63 8-46 (103)
66 1nh2_D Transcription initiatio 32.0 45 0.0015 22.2 3.3 26 38-63 57-85 (121)
67 2qqr_A JMJC domain-containing 29.4 56 0.0019 21.5 3.4 24 27-50 7-30 (118)
68 4hcz_A PHD finger protein 1; p 28.9 79 0.0027 18.4 3.6 38 28-65 6-46 (58)
69 3qo6_A Protease DO-like 1, chl 28.4 70 0.0024 23.8 4.3 39 20-60 69-107 (348)
70 3gr5_A ESCC; secretin, type II 28.1 51 0.0017 22.2 3.2 51 8-58 16-68 (156)
71 4fln_A Protease DO-like 2, chl 27.9 52 0.0018 26.8 3.6 31 30-60 97-128 (539)
72 3num_A Serine protease HTRA1; 26.4 96 0.0033 22.8 4.7 32 29-60 69-100 (332)
73 3frn_A Flagellar protein FLGA; 20.8 72 0.0025 24.0 3.0 24 25-48 236-260 (278)
74 2qas_A SSPB, hypothetical prot 20.7 1.3E+02 0.0045 20.8 4.1 40 6-58 47-86 (157)
75 4bbk_A Kindlin-1, fermitin fam 20.6 56 0.0019 22.9 2.2 43 44-97 40-82 (165)
No 1
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.4e-24 Score=141.70 Aligned_cols=88 Identities=25% Similarity=0.314 Sum_probs=65.1
Q ss_pred eehhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCC
Q 034096 15 TTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 94 (104)
Q Consensus 15 ~~~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGd 94 (104)
.++..+..+|+..++++|.|+|++||++.|+|+|||+||||+|+||+|++...+++++..+ ......++.+|+++|||+
T Consensus 5 ~~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~-~~~~~~~r~lG~v~iRG~ 83 (93)
T 4emg_A 5 QAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKD-KALKTIRKHYEMLFVRGD 83 (93)
T ss_dssp ----CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC---------------CEEEEEEEEEECGG
T ss_pred cccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCcccc-ccccccEeEeceEEECCC
Confidence 3445667889999999999999999999999999999999999999999875443322100 001124688999999999
Q ss_pred cEEEEEecC
Q 034096 95 SVIIVLRNP 103 (104)
Q Consensus 95 nVv~Is~~~ 103 (104)
||++|+|+.
T Consensus 84 nVv~I~p~~ 92 (93)
T 4emg_A 84 SVILIAPPR 92 (93)
T ss_dssp GEEEEECCC
T ss_pred eEEEEEecC
Confidence 999999864
No 2
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.91 E-value=2.7e-24 Score=146.60 Aligned_cols=88 Identities=74% Similarity=1.100 Sum_probs=63.2
Q ss_pred hhhHHHHHHhcC--CcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCC
Q 034096 17 LMLFCFWALEFI--VLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 94 (104)
Q Consensus 17 ~~l~~~~L~~~l--~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGd 94 (104)
...+..+|.+++ +++|.|.|+|||++.|+|+|||+||||+|+||+|.+...++++++.+..+....+|++|.++|||+
T Consensus 25 ~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~ 104 (118)
T 1b34_B 25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGD 104 (118)
T ss_dssp -CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGG
T ss_pred ccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCC
Confidence 345667899999 599999999999999999999999999999999998654333222111122334688999999999
Q ss_pred cEEEEEecCC
Q 034096 95 SVIIVLRNPK 104 (104)
Q Consensus 95 nVv~Is~~~~ 104 (104)
||++|++.|+
T Consensus 105 nVv~I~~~~~ 114 (118)
T 1b34_B 105 SVIVVLRNPL 114 (118)
T ss_dssp GEEEEEECCC
T ss_pred EEEEEEeCch
Confidence 9999999875
No 3
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.91 E-value=7.2e-24 Score=139.95 Aligned_cols=81 Identities=26% Similarity=0.386 Sum_probs=67.8
Q ss_pred hhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcE
Q 034096 17 LMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 96 (104)
Q Consensus 17 ~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnV 96 (104)
+.-+..+|+++++++|.|+|+|||++.|+|+|||+||||+|+||+|.+...++++. ....+.+|.++|||+||
T Consensus 8 ~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~-------~~~~r~lG~v~IRG~nV 80 (96)
T 3bw1_A 8 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEEL-------SESERRCEMVFIRGDTV 80 (96)
T ss_dssp CCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCC-------CEEEEEEEEEEECGGGE
T ss_pred hhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEecccccccc-------CcceeEcCEEEECCCEE
Confidence 34467889999999999999999999999999999999999999999875332110 12458899999999999
Q ss_pred EEEEecCC
Q 034096 97 IIVLRNPK 104 (104)
Q Consensus 97 v~Is~~~~ 104 (104)
++|++.+.
T Consensus 81 v~I~~~d~ 88 (96)
T 3bw1_A 81 TLISTPSE 88 (96)
T ss_dssp EEEECCC-
T ss_pred EEEEecCc
Confidence 99998763
No 4
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.90 E-value=1.7e-23 Score=138.20 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=64.7
Q ss_pred eehhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCC
Q 034096 15 TTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGD 94 (104)
Q Consensus 15 ~~~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGd 94 (104)
.....+..+|.++++++|.|++++||+++|+|+|||+||||+|+||+|++.. ++ .++.+|.++|||+
T Consensus 16 ~~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg~v~IRG~ 82 (94)
T 4emk_A 16 SMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTV----TG---------VTEKHSEMLLNGN 82 (94)
T ss_dssp ----CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETT----TC---------CEEEEEEEEECST
T ss_pred cccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecC----CC---------cEeEcCEEEEcCC
Confidence 3556678999999999999999999999999999999999999999998731 11 2477999999999
Q ss_pred cEEEEEecCC
Q 034096 95 SVIIVLRNPK 104 (104)
Q Consensus 95 nVv~Is~~~~ 104 (104)
||++|+|..+
T Consensus 83 nI~~i~p~~~ 92 (94)
T 4emk_A 83 GMCMLIPGGK 92 (94)
T ss_dssp TEEEEEECC-
T ss_pred EEEEEEeCCC
Confidence 9999999753
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.89 E-value=3.2e-23 Score=131.39 Aligned_cols=73 Identities=21% Similarity=0.351 Sum_probs=64.9
Q ss_pred hhhHHHHHHhcCCcEEEEEEcCC-eEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCc
Q 034096 17 LMLFCFWALEFIVLQVLINCRNN-KKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDS 95 (104)
Q Consensus 17 ~~l~~~~L~~~l~krV~V~l~~g-r~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdn 95 (104)
++.+..+|.++++++|.|+|++| ++++|+|+|||+|||++|+||+|.+.. + ..+.+|.++|||+|
T Consensus 3 m~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG~n 68 (77)
T 1ljo_A 3 MVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGE-----E---------KVRSLGEIVLRGNN 68 (77)
T ss_dssp CCCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETT-----E---------EEEEEEEEEECGGG
T ss_pred ccchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecC-----C---------cEeECCeEEEeCCe
Confidence 35678899999999999999999 999999999999999999999998741 1 34779999999999
Q ss_pred EEEEEecC
Q 034096 96 VIIVLRNP 103 (104)
Q Consensus 96 Vv~Is~~~ 103 (104)
|++|++++
T Consensus 69 I~~i~~~d 76 (77)
T 1ljo_A 69 VVLIQPQE 76 (77)
T ss_dssp EEEEEEC-
T ss_pred EEEEEeCC
Confidence 99999875
No 6
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.89 E-value=4.3e-23 Score=130.12 Aligned_cols=71 Identities=20% Similarity=0.231 Sum_probs=63.4
Q ss_pred hHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEE
Q 034096 19 LFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 98 (104)
Q Consensus 19 l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~ 98 (104)
.+..+|.++++++|.|+|+|||+++|+|+|||+|||++|+||+|.+.. ...+.+|.++|||+||++
T Consensus 4 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~lg~v~iRG~~I~~ 69 (75)
T 1h64_1 4 RPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG--------------EVVKRYGKIVIRGDNVLA 69 (75)
T ss_dssp CHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEECGGGEEE
T ss_pred hHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC--------------CceeECCEEEECCCEEEE
Confidence 456889999999999999999999999999999999999999998742 134789999999999999
Q ss_pred EEecC
Q 034096 99 VLRNP 103 (104)
Q Consensus 99 Is~~~ 103 (104)
|++++
T Consensus 70 i~~~~ 74 (75)
T 1h64_1 70 ISPTE 74 (75)
T ss_dssp EEEC-
T ss_pred EEeCC
Confidence 99875
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.89 E-value=6.4e-23 Score=129.78 Aligned_cols=71 Identities=21% Similarity=0.327 Sum_probs=63.9
Q ss_pred hHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEE
Q 034096 19 LFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 98 (104)
Q Consensus 19 l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~ 98 (104)
.+..+|.++++++|.|.|+||+++.|+|+|||+|||++|+||+|.+.. ...+.+|.++|||+||++
T Consensus 4 ~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~lg~v~iRG~~I~~ 69 (77)
T 1i4k_A 4 RPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG--------------EVVRKVGSVVIRGDTVVF 69 (77)
T ss_dssp CHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEECGGGEEE
T ss_pred cHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC--------------CcEeECCEEEECCCEEEE
Confidence 356889999999999999999999999999999999999999998742 134789999999999999
Q ss_pred EEecC
Q 034096 99 VLRNP 103 (104)
Q Consensus 99 Is~~~ 103 (104)
|++++
T Consensus 70 i~~~d 74 (77)
T 1i4k_A 70 VSPAP 74 (77)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99875
No 8
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.89 E-value=9.9e-23 Score=130.35 Aligned_cols=71 Identities=25% Similarity=0.413 Sum_probs=63.4
Q ss_pred hHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEE
Q 034096 19 LFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 98 (104)
Q Consensus 19 l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~ 98 (104)
.+..+|.++++++|.|+|+|||++.|+|+|||+|||++|+||+|.+.. + ..+.+|.++|||+||++
T Consensus 9 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG~~I~~ 74 (81)
T 1th7_A 9 TAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD-----G---------SGKKLGTIVIRGDNVIL 74 (81)
T ss_dssp HHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS-----S---------CEEEEEEEEECGGGEEE
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC-----C---------ceeECCEEEECCCEEEE
Confidence 467899999999999999999999999999999999999999998742 1 24779999999999999
Q ss_pred EEecC
Q 034096 99 VLRNP 103 (104)
Q Consensus 99 Is~~~ 103 (104)
|++.+
T Consensus 75 i~~~~ 79 (81)
T 1th7_A 75 ISPLQ 79 (81)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99875
No 9
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.89 E-value=6.1e-23 Score=132.05 Aligned_cols=74 Identities=19% Similarity=0.331 Sum_probs=64.8
Q ss_pred ceehhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeC
Q 034096 14 QTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 93 (104)
Q Consensus 14 ~~~~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRG 93 (104)
+.....+..+|.++++++|.|+|+|||++.|+|.|||+|||++|+||+|.+.. ...+.+|.++|||
T Consensus 10 ~~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~--------------~~~~~lg~v~IRG 75 (83)
T 1mgq_A 10 RVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG--------------EVTRRLGTVLIRG 75 (83)
T ss_dssp CCCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT--------------EEEEEEEEEEECG
T ss_pred cccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC--------------CcccCCCEEEECC
Confidence 33445566899999999999999999999999999999999999999998742 1347899999999
Q ss_pred CcEEEEEe
Q 034096 94 DSVIIVLR 101 (104)
Q Consensus 94 dnVv~Is~ 101 (104)
+||++|+|
T Consensus 76 ~~I~~i~p 83 (83)
T 1mgq_A 76 DNIVYISP 83 (83)
T ss_dssp GGEEEEEC
T ss_pred CEEEEEEC
Confidence 99999986
No 10
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.89 E-value=4.7e-23 Score=134.20 Aligned_cols=78 Identities=22% Similarity=0.382 Sum_probs=63.1
Q ss_pred HHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEEEEe
Q 034096 22 FWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 101 (104)
Q Consensus 22 ~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~Is~ 101 (104)
.+|.++++++|+|+|+|||++.|+|+|||+||||+|+||+|.+...+.+++. ......+.+|.++|||+||++|++
T Consensus 7 ~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~----~~~~~~~~lg~v~iRG~~I~~i~~ 82 (91)
T 1d3b_B 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----AEREEKRVLGLVLLRGENLVSMTV 82 (91)
T ss_dssp CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTS----CCEEEEEEEEEEEECGGGEEEEEE
T ss_pred HHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeecccccccc----ccCccEeECCEEEECCCeEEEEEc
Confidence 4688999999999999999999999999999999999999986532221110 011246889999999999999987
Q ss_pred cC
Q 034096 102 NP 103 (104)
Q Consensus 102 ~~ 103 (104)
..
T Consensus 83 ~~ 84 (91)
T 1d3b_B 83 EG 84 (91)
T ss_dssp EE
T ss_pred CC
Confidence 53
No 11
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.89 E-value=1e-22 Score=130.38 Aligned_cols=75 Identities=25% Similarity=0.407 Sum_probs=64.2
Q ss_pred ceehhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeC
Q 034096 14 QTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRG 93 (104)
Q Consensus 14 ~~~~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRG 93 (104)
|.....+..+|.++++++|.|.|+|||++.|+|+|||+|||++|+||+|. . ++ ..+.+|.++|||
T Consensus 6 ~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~-----~~---------~~~~lg~v~iRG 70 (81)
T 1i8f_A 6 SKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-I-----DG---------NVYKRGTMVVRG 70 (81)
T ss_dssp ----CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-E-----TT---------EEEEEEEEEECG
T ss_pred CccccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-c-----CC---------cccCCCEEEECC
Confidence 44455677899999999999999999999999999999999999999998 2 11 347899999999
Q ss_pred CcEEEEEecC
Q 034096 94 DSVIIVLRNP 103 (104)
Q Consensus 94 dnVv~Is~~~ 103 (104)
+||++|++++
T Consensus 71 ~~I~~i~~~d 80 (81)
T 1i8f_A 71 ENVLFISPVP 80 (81)
T ss_dssp GGEEEEEECC
T ss_pred CEEEEEEeCC
Confidence 9999999875
No 12
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.89 E-value=2.3e-23 Score=142.65 Aligned_cols=89 Identities=20% Similarity=0.273 Sum_probs=67.9
Q ss_pred ehhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcc-cccccceeeeeCeEEEeCC
Q 034096 16 TLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKK-KALPVNKDRFISKMFLRGD 94 (104)
Q Consensus 16 ~~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~-~~~~~~~~r~lg~~~IRGd 94 (104)
..+++..+|.++++++|.|+|+|||++.|+|+|||+||||+|+||+|.+...+.++...+ +......++.+|+++|||+
T Consensus 25 ~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~ 104 (121)
T 2fwk_A 25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 104 (121)
T ss_dssp CCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGG
T ss_pred cccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCC
Confidence 567888999999999999999999999999999999999999999999864211110000 0000112578999999999
Q ss_pred cEEEEEecCC
Q 034096 95 SVIIVLRNPK 104 (104)
Q Consensus 95 nVv~Is~~~~ 104 (104)
||++|++.++
T Consensus 105 nVv~I~~~~~ 114 (121)
T 2fwk_A 105 NVAMLVPGGD 114 (121)
T ss_dssp GEEEEESSSC
T ss_pred EEEEEEecCC
Confidence 9999998763
No 13
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.89 E-value=5.7e-23 Score=129.89 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=63.0
Q ss_pred hHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEE
Q 034096 19 LFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 98 (104)
Q Consensus 19 l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~ 98 (104)
.+..+|+++++++|.|+|+||++++|+|.|||+|||++|+||+|.... + ..+.+|.++|||+||++
T Consensus 4 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-----~---------~~~~lg~v~iRG~~I~~ 69 (75)
T 4emk_B 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNG-----K---------KTNVYGDAFIRGNNVLY 69 (75)
T ss_dssp HHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETT-----E---------EEEEEEEEEEEGGGSSE
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecC-----C---------cccEecEEEEcCCeEEE
Confidence 567899999999999999999999999999999999999999997631 1 23679999999999999
Q ss_pred EEecC
Q 034096 99 VLRNP 103 (104)
Q Consensus 99 Is~~~ 103 (104)
|++.+
T Consensus 70 i~~~~ 74 (75)
T 4emk_B 70 VSALD 74 (75)
T ss_dssp EEEC-
T ss_pred EEecC
Confidence 99875
No 14
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.88 E-value=7.3e-23 Score=129.79 Aligned_cols=68 Identities=24% Similarity=0.386 Sum_probs=52.5
Q ss_pred HHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEEEEe
Q 034096 22 FWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 101 (104)
Q Consensus 22 ~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~Is~ 101 (104)
.+|+++++++|.|+|+|||+++|+|.|||+|||++|+||+|.+.. + .++.+|.++|||+||++|++
T Consensus 7 ~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~----~----------~~~~lg~v~iRG~~I~~i~~ 72 (76)
T 3s6n_G 7 PELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS----G----------QQNNIGMVVIRGNSIIMLEA 72 (76)
T ss_dssp -------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC------------------CBSSEEECSSSEEEEEC
T ss_pred HHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC----C----------cEeEcCEEEECCCeEEEEEe
Confidence 579999999999999999999999999999999999999998642 1 23679999999999999998
Q ss_pred cC
Q 034096 102 NP 103 (104)
Q Consensus 102 ~~ 103 (104)
..
T Consensus 73 ~d 74 (76)
T 3s6n_G 73 LE 74 (76)
T ss_dssp --
T ss_pred cc
Confidence 65
No 15
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.88 E-value=3.1e-23 Score=136.36 Aligned_cols=77 Identities=18% Similarity=0.372 Sum_probs=65.7
Q ss_pred ceehhhHHHHHHhcCCcEEEEEE----cCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeE
Q 034096 14 QTTLMLFCFWALEFIVLQVLINC----RNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKM 89 (104)
Q Consensus 14 ~~~~~l~~~~L~~~l~krV~V~l----~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~ 89 (104)
|..+..+..+|.++++++|+|++ ++||+++|+|+|||+||||+|+||+|.... ++ .++.+|.+
T Consensus 11 ~~~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~----~~---------~~~~lg~v 77 (92)
T 3s6n_E 11 QKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSK----TK---------SRKQLGRI 77 (92)
T ss_dssp ---CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSS----SC---------CEEEEEEE
T ss_pred ceeccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecC----CC---------ceeEcCeE
Confidence 34567788999999999999999 999999999999999999999999998642 11 24679999
Q ss_pred EEeCCcEEEEEecC
Q 034096 90 FLRGDSVIIVLRNP 103 (104)
Q Consensus 90 ~IRGdnVv~Is~~~ 103 (104)
+|||+||++|+|.+
T Consensus 78 ~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 78 MLKGDNITLLQSVS 91 (92)
T ss_dssp EECGGGEEEEEEC-
T ss_pred EEeCCEEEEEEeCC
Confidence 99999999999976
No 16
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.88 E-value=1.6e-22 Score=137.26 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=56.6
Q ss_pred HHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEEEE
Q 034096 21 CFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 100 (104)
Q Consensus 21 ~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~Is 100 (104)
...|.++++++|+|+|+|||++.|+|+|||+||||+|+||+|++...+ +. .....++.+|+++|||+||++|+
T Consensus 25 i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~--~~-----~~~~~~r~lG~v~IRG~nIv~I~ 97 (113)
T 4emk_C 25 ILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPE--DG-----KLTGAIRKLGLVVVRGTTLVLIA 97 (113)
T ss_dssp -------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC----------------CCEEEEEEEEECTTTEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCC--Cc-----ccccceeEccEEEECCCeEEEEE
Confidence 367899999999999999999999999999999999999999876311 10 01124588999999999999999
Q ss_pred ecC
Q 034096 101 RNP 103 (104)
Q Consensus 101 ~~~ 103 (104)
+..
T Consensus 98 ~~d 100 (113)
T 4emk_C 98 PMD 100 (113)
T ss_dssp ECC
T ss_pred ecC
Confidence 864
No 17
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.88 E-value=1.8e-22 Score=132.83 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=60.1
Q ss_pred ceehhhHHHHHHhcCCcEEEEEEcCC-eEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEe
Q 034096 14 QTTLMLFCFWALEFIVLQVLINCRNN-KKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLR 92 (104)
Q Consensus 14 ~~~~~l~~~~L~~~l~krV~V~l~~g-r~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IR 92 (104)
+...+.+..+|.++++++|.|+|++| ++++|+|+|||+|||++|+||+|.+.. + ..+.+|.++||
T Consensus 16 ~~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~-----~---------~~~~lg~v~IR 81 (93)
T 1n9r_A 16 AMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAG-----V---------SHGTLGEIFIR 81 (93)
T ss_dssp ----------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETT-----E---------EEEECCSEEEC
T ss_pred ccccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCC-----C---------eEeEcCEEEEc
Confidence 44556677899999999999999999 999999999999999999999998631 1 24679999999
Q ss_pred CCcEEEEEecC
Q 034096 93 GDSVIIVLRNP 103 (104)
Q Consensus 93 GdnVv~Is~~~ 103 (104)
|+||++|++.+
T Consensus 82 G~nI~~I~~~~ 92 (93)
T 1n9r_A 82 CNNVLYIRELP 92 (93)
T ss_dssp GGGEEEEEECC
T ss_pred CCeEEEEEeCC
Confidence 99999999876
No 18
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.88 E-value=4.2e-22 Score=129.24 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=63.5
Q ss_pred hHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEE
Q 034096 19 LFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 98 (104)
Q Consensus 19 l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~ 98 (104)
.+..+|+++++++|.|+|++|++++|+|+|||+|||++|+||+|... ++ ..+.+|.++|||+||++
T Consensus 6 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-----g~---------~~~~lg~v~IRG~nI~~ 71 (86)
T 3s6n_F 6 NPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-----GA---------LSGHLGEVLIRCNNVLY 71 (86)
T ss_dssp CHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET-----TE---------EEEEESSEEECGGGEEE
T ss_pred CcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-----Cc---------eeeEccEEEEeCCeEEE
Confidence 46789999999999999999999999999999999999999999753 11 24679999999999999
Q ss_pred EEecC
Q 034096 99 VLRNP 103 (104)
Q Consensus 99 Is~~~ 103 (104)
|++++
T Consensus 72 i~~~d 76 (86)
T 3s6n_F 72 IRGVE 76 (86)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99876
No 19
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.87 E-value=6.6e-22 Score=125.23 Aligned_cols=73 Identities=11% Similarity=0.143 Sum_probs=64.0
Q ss_pred hhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcE
Q 034096 17 LMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 96 (104)
Q Consensus 17 ~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnV 96 (104)
++.+..+|+++++++|.|+|++|++++|+|.|||+|||++|+||+|.... + ..+.+|.++|||+||
T Consensus 3 ~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~----~----------~~~~lg~v~IRG~nI 68 (75)
T 1d3b_A 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD----G----------RVAQLEQVYIRGCKI 68 (75)
T ss_dssp -CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT----S----------CEEEEEEEEECGGGE
T ss_pred ccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCC----C----------cEEEcCeEEEeCCEE
Confidence 46778999999999999999999999999999999999999999997531 1 136799999999999
Q ss_pred EEEEecC
Q 034096 97 IIVLRNP 103 (104)
Q Consensus 97 v~Is~~~ 103 (104)
.+|+.++
T Consensus 69 ~~i~lPd 75 (75)
T 1d3b_A 69 RFLILPD 75 (75)
T ss_dssp EEEEECC
T ss_pred EEEEcCC
Confidence 9998764
No 20
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.86 E-value=8.2e-22 Score=147.66 Aligned_cols=77 Identities=22% Similarity=0.394 Sum_probs=63.5
Q ss_pred HHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEEEEe
Q 034096 22 FWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 101 (104)
Q Consensus 22 ~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~Is~ 101 (104)
..|.+++|++|+|+|+|||+++|+|+|||+||||+|+||+|++...+++++. ....++|++|+++||||||++|+.
T Consensus 7 ~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~----~~~~~~R~LGlV~IRGdnIV~Isv 82 (231)
T 3pgw_B 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ----AEREEKRVLGLVLLRGENLVSMTV 82 (231)
T ss_pred HHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCccccc----ccccceeEeceEEECCCcEEEEEe
Confidence 5689999999999999999999999999999999999999987533322211 012356899999999999999985
Q ss_pred c
Q 034096 102 N 102 (104)
Q Consensus 102 ~ 102 (104)
.
T Consensus 83 e 83 (231)
T 3pgw_B 83 E 83 (231)
T ss_pred c
Confidence 3
No 21
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.85 E-value=2.6e-21 Score=132.13 Aligned_cols=72 Identities=15% Similarity=0.244 Sum_probs=63.5
Q ss_pred hhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEE
Q 034096 18 MLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 97 (104)
Q Consensus 18 ~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv 97 (104)
|++..+|.++++++|.|.|++|+++.|+|.|||+||||+|+||+|+... + ..+.+|.++|||+||+
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~----~----------~~~~lg~v~IRG~nI~ 66 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKN----R----------EPVQLETLSIRGNNIR 66 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTT----S----------CCEEEEEEEECGGGEE
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCC----C----------ceeEcceEEEcCCeEE
Confidence 5678899999999999999999999999999999999999999997421 1 1267999999999999
Q ss_pred EEEecC
Q 034096 98 IVLRNP 103 (104)
Q Consensus 98 ~Is~~~ 103 (104)
+|++++
T Consensus 67 ~I~~pd 72 (119)
T 1b34_A 67 YFILPD 72 (119)
T ss_dssp EEECCT
T ss_pred EEEecc
Confidence 999875
No 22
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.84 E-value=4.9e-21 Score=128.60 Aligned_cols=72 Identities=17% Similarity=0.215 Sum_probs=53.7
Q ss_pred hHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEE
Q 034096 19 LFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVII 98 (104)
Q Consensus 19 l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~ 98 (104)
.+..+|+++++++|.|+|++|++++|+|.|||+||||+|+||+|.... ++ ..+.+|.++|||+||.+
T Consensus 16 ~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~d----g~---------~~~~lg~v~IRG~nI~~ 82 (105)
T 4emh_A 16 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPD----GD---------KFFRLPECYIRGNNIKY 82 (105)
T ss_dssp ----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT----SC---------EEEEEEEEEECGGGEEE
T ss_pred cHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccC----Cc---------eeeEcCeEEEeCCeEEE
Confidence 346789999999999999999999999999999999999999997531 11 23679999999999999
Q ss_pred EEecC
Q 034096 99 VLRNP 103 (104)
Q Consensus 99 Is~~~ 103 (104)
|++++
T Consensus 83 I~~pd 87 (105)
T 4emh_A 83 LRIQD 87 (105)
T ss_dssp EEC--
T ss_pred EecCH
Confidence 99865
No 23
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.80 E-value=8.7e-20 Score=126.56 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=59.1
Q ss_pred HHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEEEE
Q 034096 21 CFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 100 (104)
Q Consensus 21 ~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~Is 100 (104)
..+|.++++++|.|.|++|+++.|+|.|||+|||++|+||+|.. + +.+|.++|||+||++|+
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~------~------------~~lg~v~IRG~nI~~I~ 63 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA------G------------EKFNRVFIMYRYIVHID 63 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT------C------------CEEEEEEECGGGEEEEE
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc------C------------CEeceEEEeCCeEEEEE
Confidence 56899999999999999999999999999999999999999951 0 34899999999999999
Q ss_pred ecC
Q 034096 101 RNP 103 (104)
Q Consensus 101 ~~~ 103 (104)
+++
T Consensus 64 ~~d 66 (130)
T 1m5q_A 64 STE 66 (130)
T ss_dssp ECC
T ss_pred cCC
Confidence 875
No 24
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.80 E-value=1.6e-19 Score=124.65 Aligned_cols=73 Identities=11% Similarity=0.160 Sum_probs=63.5
Q ss_pred hhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcE
Q 034096 17 LMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSV 96 (104)
Q Consensus 17 ~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnV 96 (104)
++++..+|.++++++|.|+|++|++|+|+|.+||+|||++|+||+|+... + ....+|.++|||+||
T Consensus 3 ~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~----g----------~~~~l~~v~IRGnnI 68 (126)
T 2y9a_D 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD----G----------RVAQLEQVYIRGSKI 68 (126)
T ss_dssp -CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTT----S----------CCEEEEEEEECGGGE
T ss_pred cccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCC----C----------cEeecccEEEeCCEE
Confidence 45678899999999999999999999999999999999999999997421 1 125699999999999
Q ss_pred EEEEecC
Q 034096 97 IIVLRNP 103 (104)
Q Consensus 97 v~Is~~~ 103 (104)
.+|+.++
T Consensus 69 ~~I~lpd 75 (126)
T 2y9a_D 69 RFLILPD 75 (126)
T ss_dssp EEEECCS
T ss_pred EEEEccc
Confidence 9999654
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.44 E-value=1.4e-06 Score=56.31 Aligned_cols=58 Identities=24% Similarity=0.211 Sum_probs=48.7
Q ss_pred HHHhcCCcEEEEEEcCCeEEEEEEEEec-CccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEEEE
Q 034096 23 WALEFIVLQVLINCRNNKKLLGRVRAFD-RHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVL 100 (104)
Q Consensus 23 ~L~~~l~krV~V~l~~gr~i~G~L~~fD-~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~Is 100 (104)
.|+.+++|+|.|++.||++++|.|.+|| .-.|++|.|+.| ++ .....+|-|..|..|-
T Consensus 11 el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~--------~~------------~~~~~iI~G~aI~eI~ 69 (86)
T 1y96_A 11 EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLE--------DG------------SMSVTGIMGHAVQTVE 69 (86)
T ss_dssp HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECT--------TS------------CEEEEEECGGGEEEEE
T ss_pred HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeeccc--------CC------------eEEEEEEecceEEEEE
Confidence 5899999999999999999999999999 999999999811 11 1477888888877664
No 26
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.01 E-value=0.0015 Score=41.21 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=29.0
Q ss_pred HHHhcC--CcEEEEEEcCCeEEEEEEEEecCccceEee
Q 034096 23 WALEFI--VLQVLINCRNNKKLLGRVRAFDRHCNMVLE 58 (104)
Q Consensus 23 ~L~~~l--~krV~V~l~~gr~i~G~L~~fD~~mNLvL~ 58 (104)
+|+.+. ..+|.|.|.+|-.++|.+.+||+|+ +.|+
T Consensus 11 fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~-VlL~ 47 (77)
T 1kq1_A 11 ALENFKANQTEVTVFFLNGFQMKGVIEEYDKYV-VSLN 47 (77)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 344444 6799999999999999999999999 6665
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.00 E-value=0.0013 Score=41.14 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=27.2
Q ss_pred CcEEEEEEcCCeEEEEEEEEecCccceEeec
Q 034096 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLEN 59 (104)
Q Consensus 29 ~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d 59 (104)
..+|.|.|.+|-.++|.+.+||+|+ +.|++
T Consensus 21 k~~Vti~L~nG~~l~G~I~~fD~f~-vlL~~ 50 (74)
T 2ylb_A 21 RVPVSIYLVNGIKLQGQIESFDQFV-ILLKN 50 (74)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSE-EEEES
T ss_pred CCcEEEEEeCCCEEEEEEEEECCcE-EEEEC
Confidence 5699999999999999999999999 77765
No 28
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.93 E-value=0.0017 Score=40.39 Aligned_cols=30 Identities=20% Similarity=0.111 Sum_probs=26.5
Q ss_pred CCcEEEEEEcCCeEEEEEEEEecCccceEee
Q 034096 28 IVLQVLINCRNNKKLLGRVRAFDRHCNMVLE 58 (104)
Q Consensus 28 l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~ 58 (104)
-+.+|.|.|.+|-.++|.+.|||+|+ +.|+
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ft-Vll~ 53 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYE-IMVK 53 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceE-EEEE
Confidence 46699999999999999999999999 5554
No 29
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.92 E-value=0.0016 Score=41.16 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=26.3
Q ss_pred CcEEEEEEcCCeEEEEEEEEecCccceEee
Q 034096 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLE 58 (104)
Q Consensus 29 ~krV~V~l~~gr~i~G~L~~fD~~mNLvL~ 58 (104)
..+|.|.|.+|-.++|.+.|||+|+ +.|+
T Consensus 23 ~~~Vtv~L~nG~~l~G~I~~fD~f~-VlL~ 51 (78)
T 3ahu_A 23 NTYVTVFLLNGFQLRGQVKGFDNFT-VLLE 51 (78)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred CCcEEEEEeCCeEEEEEEEEEcceE-EEEE
Confidence 6799999999999999999999999 5554
No 30
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.84 E-value=0.0017 Score=41.38 Aligned_cols=30 Identities=33% Similarity=0.521 Sum_probs=26.9
Q ss_pred CcEEEEEEcCCeEEEEEEEEecCccceEeec
Q 034096 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLEN 59 (104)
Q Consensus 29 ~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d 59 (104)
..+|.|.|.+|-.++|.+.|||+|+ +.|++
T Consensus 19 ~~~Vtv~L~NG~~l~G~I~~fD~ft-VlL~~ 48 (82)
T 1u1s_A 19 RVPVSIYLVNGIKLQGQIESFDQFV-ILLKN 48 (82)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSE-EEEES
T ss_pred CCcEEEEEeCCcEEEEEEEEEcceE-EEEec
Confidence 6699999999999999999999999 66654
No 31
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.78 E-value=0.0016 Score=43.24 Aligned_cols=31 Identities=32% Similarity=0.504 Sum_probs=27.1
Q ss_pred CcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 29 ~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
..+|.|.|.+|-.++|++.+||+|+ +.|++.
T Consensus 21 k~~VtI~LvNG~~L~G~I~~fD~f~-VlL~~~ 51 (104)
T 2y90_A 21 RVPVSIYLVNGIKLQGQIESFDQFV-ILLKNT 51 (104)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSE-EEEESS
T ss_pred CCcEEEEEeCCCEEEEEEEEECCcE-EEEECC
Confidence 3489999999999999999999999 666643
No 32
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=96.77 E-value=0.0021 Score=40.67 Aligned_cols=29 Identities=34% Similarity=0.445 Sum_probs=25.9
Q ss_pred CcEEEEEEcCCeEEEEEEEEecCccceEee
Q 034096 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLE 58 (104)
Q Consensus 29 ~krV~V~l~~gr~i~G~L~~fD~~mNLvL~ 58 (104)
..+|.|.|.+|-.++|.+.+||+|+ +.|+
T Consensus 20 k~~VtI~LvnG~~L~G~I~~fD~f~-VlL~ 48 (79)
T 3sb2_A 20 HVPVSIYLVNGIKLQGHVESFDQYV-VLLR 48 (79)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred CCeEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 4579999999999999999999999 6664
No 33
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=96.38 E-value=0.01 Score=36.67 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=38.6
Q ss_pred EEecCceehhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 9 SFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 9 ~~~~~~~~~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
+|..+-|++=+...|.++. ..|.|+|.+|-.++|.+.-+|.|+ |.|.+.
T Consensus 3 ~fdt~lPsvR~lQ~~ik~k--~~V~I~L~tG~~l~G~i~WQD~~c-l~L~~~ 51 (70)
T 3hfo_A 3 RFDSGLPSVRQVQLLIKDQ--TPVEIKLLTGDSLFGTIRWQDTDG-LGLVDD 51 (70)
T ss_dssp --CCSCHHHHHHHHHHHHT--CEEEEEETTSCEEEEEEEEECSSE-EEEECT
T ss_pred cccCCCCcHHHHHHHHhhC--ceEEEEecCCCEEEEEEEEeCCCE-EEEEcC
Confidence 4666777776666777665 689999999999999999999999 777653
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=95.92 E-value=0.016 Score=35.98 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=34.5
Q ss_pred EEecCceehhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceE
Q 034096 9 SFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 61 (104)
Q Consensus 9 ~~~~~~~~~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~ 61 (104)
+|..+-|++=+...|+++. ..|.|+|.+|-.++|.+.-+|.|+ |.|.+..
T Consensus 5 ~fdt~lPsvR~lQ~~Ik~k--~~V~I~L~tGd~l~G~i~WQD~~c-l~L~~~~ 54 (72)
T 3hfn_A 5 EFDTSLPSIRQLQNLIKQA--APVEIKLVTGDAITGRVLWQDPTC-VCIADEN 54 (72)
T ss_dssp ----CHHHHHHHHHHHSSC--CEEEEEETTSCEEEEEEEEECSSE-EEEEC--
T ss_pred ccCCCCCcHHHHHHHHhhC--ceEEEEecCCCEEEEEEEEECCCE-EEEEcCC
Confidence 3555666664444555444 689999999999999999999999 7776643
No 35
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.40 E-value=0.13 Score=31.41 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=35.6
Q ss_pred HHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeeceEEeee
Q 034096 21 CFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWT 65 (104)
Q Consensus 21 ~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~E~~~ 65 (104)
-..|++-.++||-+...+...++|+|+-||+-. +.|+|+..+..
T Consensus 8 dktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~G 51 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIG 51 (71)
T ss_dssp HHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTE
T ss_pred HHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhc
Confidence 567888999999999999999999999999998 88899998653
No 36
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=92.60 E-value=1 Score=28.63 Aligned_cols=63 Identities=17% Similarity=0.200 Sum_probs=46.7
Q ss_pred HHHHHhcCCcEEEEEEcCCeEEEEEEEEecCcc-ceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEEE
Q 034096 21 CFWALEFIVLQVLINCRNNKKLLGRVRAFDRHC-NMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIV 99 (104)
Q Consensus 21 ~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~m-NLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~I 99 (104)
+..|....+++|.+.+.++-++.|+..|+|... |+..++- | + | - -.++..++|+.-|+++
T Consensus 21 Lr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L-~--T--P---------i-----Gv~~eAlLR~~Dii~~ 81 (85)
T 1y96_B 21 LRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQL-Q--T--P---------I-----GVQAEALLRCSDIISY 81 (85)
T ss_dssp HHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEE-C--C--T---------T-----CCEEEEEEEGGGEEEE
T ss_pred HHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhc-C--C--C---------c-----ccchhhhhhcCCEEEE
Confidence 455667789999999999999999999999754 4443321 1 1 0 1 1267899999999999
Q ss_pred Eec
Q 034096 100 LRN 102 (104)
Q Consensus 100 s~~ 102 (104)
+..
T Consensus 82 sF~ 84 (85)
T 1y96_B 82 TFK 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 864
No 37
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=91.39 E-value=0.3 Score=33.18 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=32.7
Q ss_pred HHhcCCcEEEEEEcCCeEEEEEEEEecCccceEe--eceEE
Q 034096 24 ALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVL--ENVRE 62 (104)
Q Consensus 24 L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL--~d~~E 62 (104)
..++++..|.|.|+||..++|++..+|.- +|.| .+|..
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a~~ 46 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDSS-NSILQLRLAND 46 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEETT-TTEEEEEETTT
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecCC-eeEEecccccc
Confidence 46889999999999999999999999864 5888 87743
No 38
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=86.64 E-value=0.97 Score=33.56 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=30.4
Q ss_pred cCCcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 27 FIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 27 ~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
.++++|.+...++..++|+..|.|+...|+|++.
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 4589999998888999999999999999999754
No 39
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=86.43 E-value=0.7 Score=32.14 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=28.9
Q ss_pred HHHHhcCCcEEEEEE----cCCeEEEEEEEEecCccceEee
Q 034096 22 FWALEFIVLQVLINC----RNNKKLLGRVRAFDRHCNMVLE 58 (104)
Q Consensus 22 ~~L~~~l~krV~V~l----~~gr~i~G~L~~fD~~mNLvL~ 58 (104)
..+..++++.|.|++ .+.+.++|+|.++|.-. +.|.
T Consensus 97 ~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~-v~l~ 136 (164)
T 1ib8_A 97 DAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE-LTME 136 (164)
T ss_dssp HHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTE-EEEE
T ss_pred HHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCCE-EEEE
Confidence 457899999999999 45689999999998753 5543
No 40
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=85.16 E-value=5.7 Score=25.60 Aligned_cols=74 Identities=15% Similarity=0.204 Sum_probs=48.5
Q ss_pred HHHhcCCcEEEEEEcCCeEEEEEEEEecCc-cceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEEEEe
Q 034096 23 WALEFIVLQVLINCRNNKKLLGRVRAFDRH-CNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 101 (104)
Q Consensus 23 ~L~~~l~krV~V~l~~gr~i~G~L~~fD~~-mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~Is~ 101 (104)
....+++++|.+..+.+-.|+|+|...|.- .-+.|.+|.-.-++-+..+. .-+... .-...++.||+.|--+..
T Consensus 13 ~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~----~ipp~~-~vyeyIvFrGsDIKDL~V 87 (95)
T 2fb7_A 13 GGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDR----PIAPRD-ETFEYIIFRGSDIKDLTV 87 (95)
T ss_dssp ---CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSS----CCCSCC-CCSSCEEECSTTEEEEEE
T ss_pred ccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCC----ccCCCC-cceeEEEEcCCCcceEEE
Confidence 356789999999999999999999998853 33778876654332111110 011222 336899999999876653
No 41
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=83.80 E-value=6.4 Score=25.03 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=50.0
Q ss_pred hcCCcEEEEEEcCCeEEEEEEEEecCcc-ceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEEEEEe
Q 034096 26 EFIVLQVLINCRNNKKLLGRVRAFDRHC-NMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLR 101 (104)
Q Consensus 26 ~~l~krV~V~l~~gr~i~G~L~~fD~~m-NLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv~Is~ 101 (104)
.+++++|.+..+.+-.|+|+|...|..= -+.|.||.-.-++-+..+. . -+.. +.-...++.||+.|--+..
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~---~-ipp~-~~vy~yIvFrgsDIKdL~V 81 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQF---Q-IAPQ-SQIYDYILFRGSDIKDIRV 81 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSS---C-CCCC-CSCEEEEEEETTTEEEEEE
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCc---c-cCCC-CceeeEEEEccCCccEEEE
Confidence 5789999999999999999999998763 4788888765443221110 0 1121 2336899999999877653
No 42
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=81.72 E-value=2.9 Score=26.44 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=33.4
Q ss_pred HhcCCcEEEEEEcCCe-EEEEEEEEecCc-cceEeeceE
Q 034096 25 LEFIVLQVLINCRNNK-KLLGRVRAFDRH-CNMVLENVR 61 (104)
Q Consensus 25 ~~~l~krV~V~l~~gr-~i~G~L~~fD~~-mNLvL~d~~ 61 (104)
.+++++.|.+..+++- .|+|.|...|.. -||.|.+|+
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f 43 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF 43 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh
Confidence 5789999999999987 999999999987 479999996
No 43
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=70.45 E-value=2.9 Score=30.15 Aligned_cols=32 Identities=6% Similarity=0.169 Sum_probs=26.8
Q ss_pred hcCCcEEEEEEcCCeEEEEEEEEecCccceEeec
Q 034096 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLEN 59 (104)
Q Consensus 26 ~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d 59 (104)
..++++|.+...++ ++|+..|.|+...|++++
T Consensus 185 ~~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 216 (233)
T 2eay_A 185 LYLGEEVKLLGEGK--ITGKLVGLSEKGGALILT 216 (233)
T ss_dssp TTTTSEEEETTEEE--EEEEEEEECTTSCEEEEE
T ss_pred cccCCEEEEEECCe--EEEEEEEECCCCeEEEEE
Confidence 34689998876544 999999999999999975
No 44
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=67.67 E-value=8.7 Score=27.63 Aligned_cols=32 Identities=28% Similarity=0.207 Sum_probs=28.4
Q ss_pred cCCcEEEEEEcCCeEEEEEEEEecCccceEeec
Q 034096 27 FIVLQVLINCRNNKKLLGRVRAFDRHCNMVLEN 59 (104)
Q Consensus 27 ~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d 59 (104)
.++++|.+...++..++|+..|.|+...|+ ++
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 579999999887766999999999999998 64
No 45
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=64.26 E-value=10 Score=28.32 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=28.3
Q ss_pred hcCCcEEEEEEcCCeEEEEEEEEecCccceEeec
Q 034096 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLEN 59 (104)
Q Consensus 26 ~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d 59 (104)
..++++|.+... +..++|+..|.|....|++++
T Consensus 270 ~~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~ 302 (321)
T 1bia_A 270 NFINRPVKLIIG-DKEIFGISRGIDKQGALLLEQ 302 (321)
T ss_dssp TTTTSEEEEEET-TEEEEEEEEEECTTSCEEEEE
T ss_pred hhcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEE
Confidence 346999999865 568999999999999999975
No 46
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=63.63 E-value=5.9 Score=28.61 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=24.1
Q ss_pred CCcEEEEEEcCCeEEEEEEEEecCccceEeec
Q 034096 28 IVLQVLINCRNNKKLLGRVRAFDRHCNMVLEN 59 (104)
Q Consensus 28 l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d 59 (104)
++++|.+...++ ++|+..|.|+...|++++
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999987766 999999999999999975
No 47
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=62.46 E-value=17 Score=22.07 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=31.0
Q ss_pred CCcEEEEEEcCCeEEEEEEEEecCccceEe-eceEEeeec
Q 034096 28 IVLQVLINCRNNKKLLGRVRAFDRHCNMVL-ENVREMWTE 66 (104)
Q Consensus 28 l~krV~V~l~~gr~i~G~L~~fD~~mNLvL-~d~~E~~~~ 66 (104)
++..|.++-+||+-|-|+++...+.-=||. +|-.|.|..
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~ 57 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWCE 57 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEEC
T ss_pred cCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceeee
Confidence 578899999999999999987776665555 677777754
No 48
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=60.86 E-value=10 Score=28.56 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=27.0
Q ss_pred cCCcEEEEEEcCCeEEEEEEEEecCccceEeec
Q 034096 27 FIVLQVLINCRNNKKLLGRVRAFDRHCNMVLEN 59 (104)
Q Consensus 27 ~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d 59 (104)
.++++|.+... +..++|+..|.|....|++++
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 56899999764 568999999999999999974
No 49
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=59.37 E-value=9.7 Score=24.48 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=16.4
Q ss_pred CcEEEEEEcCCeEEEEEE
Q 034096 29 VLQVLINCRNNKKLLGRV 46 (104)
Q Consensus 29 ~krV~V~l~~gr~i~G~L 46 (104)
..+|.+.|.||+.+.|++
T Consensus 28 q~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 28 QERVRIELDDGSMIAGTV 45 (101)
T ss_dssp TCEEEEEETTSCEEEEEE
T ss_pred eeEEEEEEcCCCeEeeee
Confidence 359999999999999997
No 50
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=56.54 E-value=16 Score=25.98 Aligned_cols=29 Identities=14% Similarity=0.047 Sum_probs=24.9
Q ss_pred hcCCcEEEEEEcCCeEEEEEEEEecCccceEeec
Q 034096 26 EFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLEN 59 (104)
Q Consensus 26 ~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d 59 (104)
..++++|.+ ++ ++|+..|.|....|++++
T Consensus 191 ~~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 191 HGMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hhcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 346899999 45 999999999999999974
No 51
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=55.82 E-value=21 Score=22.60 Aligned_cols=29 Identities=17% Similarity=0.014 Sum_probs=24.8
Q ss_pred HHHHHHhcCCcEEEEEEcCCeE----EEEEEEE
Q 034096 20 FCFWALEFIVLQVLINCRNNKK----LLGRVRA 48 (104)
Q Consensus 20 ~~~~L~~~l~krV~V~l~~gr~----i~G~L~~ 48 (104)
....|..++|++|.++.+.||. -.|+|..
T Consensus 16 IK~~l~~~vG~~V~l~An~GRkK~~er~GvL~e 48 (90)
T 3fb9_A 16 IKEEIKAHEGQVVEMTLENGRKRQKNRLGKLIE 48 (90)
T ss_dssp HHHHHHHTTTSEEEEEECCSSSCCSCEEEEEEE
T ss_pred HHHHHHHcCCCEEEEEecCCcccEEEEEEEEEE
Confidence 4578999999999999999984 6899864
No 52
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=53.85 E-value=17 Score=28.22 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=28.1
Q ss_pred cEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 30 krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
.++.|.+.+|+.+.+++.++|...+|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5899999999999999999999999987654
No 53
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=52.62 E-value=17 Score=28.47 Aligned_cols=38 Identities=8% Similarity=0.102 Sum_probs=30.8
Q ss_pred HHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 21 CFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 21 ~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
.+.+... .++.|.+.+|+++.+++.++|....|.|=..
T Consensus 104 ~HVv~~a--~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 104 NHVVDNA--TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp HHHHTTE--EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred hHHhCCC--CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4444433 4799999999999999999999999987544
No 54
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=45.60 E-value=1.4 Score=28.74 Aligned_cols=19 Identities=32% Similarity=0.366 Sum_probs=16.9
Q ss_pred EEEEEEecCccceEeeceE
Q 034096 43 LGRVRAFDRHCNMVLENVR 61 (104)
Q Consensus 43 ~G~L~~fD~~mNLvL~d~~ 61 (104)
.|....||+-.|+.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 4568999999999999987
No 55
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=43.17 E-value=27 Score=26.26 Aligned_cols=38 Identities=8% Similarity=0.141 Sum_probs=30.6
Q ss_pred HHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 21 CFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 21 ~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
...+... .++.|.+.+|+.+.+++.++|....|.|=..
T Consensus 81 aHVv~~~--~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 81 NHVINQA--QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp HHHHTTE--EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred hHHhCCC--CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 4444442 5789999999999999999999999887544
No 56
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=40.38 E-value=24 Score=27.61 Aligned_cols=38 Identities=8% Similarity=0.121 Sum_probs=31.0
Q ss_pred HHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 21 CFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 21 ~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
...+... .++.|.+.+|+.+.+++.++|...+|.|=..
T Consensus 95 ~HVv~~a--~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 95 DHVIRNA--SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp HHHHTTE--EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred hHHhCCC--CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4444443 5789999999999999999999999987654
No 57
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=36.84 E-value=36 Score=24.36 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=26.8
Q ss_pred cEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 30 krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
.++.|.+.+|+.+.+.+.+.|....|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4789999999999999999999998887544
No 58
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=36.18 E-value=47 Score=23.19 Aligned_cols=38 Identities=5% Similarity=0.086 Sum_probs=30.5
Q ss_pred HHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 21 CFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 21 ~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
..++.. ..++.|.+.+|+.+.+.+.++|....|.|=..
T Consensus 70 aHvv~~--~~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 70 KHVIND--ADQIIVALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp HHHHTT--CSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred eeecCC--CCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 454543 35899999999999999999999999887543
No 59
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=35.43 E-value=46 Score=24.38 Aligned_cols=38 Identities=5% Similarity=0.034 Sum_probs=30.5
Q ss_pred HHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 21 CFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 21 ~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
..++... ..+.|.+.+|+.+.+++.++|...+|.|=..
T Consensus 59 aHvv~~~--~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 59 KHVINDA--DQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp HHHHTTC--SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred HHHcCCC--CEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 4555443 4789999999999999999999999987544
No 60
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=35.33 E-value=42 Score=24.60 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=27.7
Q ss_pred cEEEEEEcCCeEEEEEEEEecCccceEeeceE
Q 034096 30 LQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 61 (104)
Q Consensus 30 krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~ 61 (104)
..+.|.+.+|+.+.+++.+||...+|.|=...
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl~ 95 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRVQ 95 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEEC
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEEC
Confidence 48999999999999999999999998875443
No 61
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=34.79 E-value=39 Score=21.96 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=20.3
Q ss_pred CCeEEEEEE---EEecCccceEeeceEEe
Q 034096 38 NNKKLLGRV---RAFDRHCNMVLENVREM 63 (104)
Q Consensus 38 ~gr~i~G~L---~~fD~~mNLvL~d~~E~ 63 (104)
+...+.|.| +-.|+.|.++|.|++=.
T Consensus 53 sk~sfKG~L~tYrfcDnVWTf~lkd~~fk 81 (108)
T 1nvp_D 53 NRVNFRGSLNTYRFCDNVWTFVLNDVEFR 81 (108)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cCCeEeeccCCccccCcEEEEEEeceEEE
Confidence 345677877 56799999999998743
No 62
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=34.54 E-value=48 Score=24.44 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=31.6
Q ss_pred hHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 19 LFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 19 l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
.-..++.. ..++.|.+.+|+.+.+++.++|....|.|=..
T Consensus 62 T~aHvv~~--~~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 62 TNAHVVAD--RRRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp ECHHHHTT--CSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred ECHHHcCC--CCEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 33455554 35799999999999999999999999887544
No 63
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=33.71 E-value=54 Score=22.89 Aligned_cols=33 Identities=12% Similarity=0.307 Sum_probs=28.3
Q ss_pred CcEEEEEEcCCeEEEEEEEEecCccceEeeceE
Q 034096 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 61 (104)
Q Consensus 29 ~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~~ 61 (104)
...+.|.+.+|+.+.+.+.++|....|.|=...
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l~ 118 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKID 118 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEECC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEec
Confidence 458999999999999999999999998875443
No 64
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=33.62 E-value=27 Score=25.00 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=20.5
Q ss_pred HhcCCcEEEEEEcCCeEEEEEEEE
Q 034096 25 LEFIVLQVLINCRNNKKLLGRVRA 48 (104)
Q Consensus 25 ~~~l~krV~V~l~~gr~i~G~L~~ 48 (104)
+..++..|+|++.+|+.++|++.+
T Consensus 167 ~G~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 167 NAAVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CBCTTSEEEEEETTSCEEEEEECT
T ss_pred ccCCCCEEEEECCCCCEEEEEEec
Confidence 346789999999999999999865
No 65
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=33.40 E-value=97 Score=19.96 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=32.2
Q ss_pred HhcCCcEEEEEEcCCe-EEEEEEEEecCccceEeeceEEe
Q 034096 25 LEFIVLQVLINCRNNK-KLLGRVRAFDRHCNMVLENVREM 63 (104)
Q Consensus 25 ~~~l~krV~V~l~~gr-~i~G~L~~fD~~mNLvL~d~~E~ 63 (104)
++++++-|.|.+.+.- .|+|.+...|+ -++.|.+|+.-
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFrN 46 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFRN 46 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEET
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhhc
Confidence 4678999999999975 99999999996 44999988863
No 66
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=32.03 E-value=45 Score=22.16 Aligned_cols=26 Identities=12% Similarity=0.212 Sum_probs=20.4
Q ss_pred CCeEEEEEE---EEecCccceEeeceEEe
Q 034096 38 NNKKLLGRV---RAFDRHCNMVLENVREM 63 (104)
Q Consensus 38 ~gr~i~G~L---~~fD~~mNLvL~d~~E~ 63 (104)
+...+.|.| +-.|+.|.++|.|++=.
T Consensus 57 sk~sfKG~L~tYrfcDnVWtfilkd~~fk 85 (121)
T 1nh2_D 57 SKLTVKGNLDTYGFCDDVWTFIVKNCQVT 85 (121)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cCCeEEeeeccccccCcEEEEEEeceEEE
Confidence 345677887 56799999999998844
No 67
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=29.41 E-value=56 Score=21.52 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=20.9
Q ss_pred cCCcEEEEEEcCCeEEEEEEEEec
Q 034096 27 FIVLQVLINCRNNKKLLGRVRAFD 50 (104)
Q Consensus 27 ~l~krV~V~l~~gr~i~G~L~~fD 50 (104)
.++.+|..+-++||-+.|++.+-.
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEe
Confidence 468999999999999999997654
No 68
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=28.92 E-value=79 Score=18.40 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=28.9
Q ss_pred CCcEEEEEEcCCeEEEEEEEEecCcc---ceEeeceEEeee
Q 034096 28 IVLQVLINCRNNKKLLGRVRAFDRHC---NMVLENVREMWT 65 (104)
Q Consensus 28 l~krV~V~l~~gr~i~G~L~~fD~~m---NLvL~d~~E~~~ 65 (104)
.+.-|.+.-.||+-|-|++...|+.- =+..+|-.+.|.
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W~ 46 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 46 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEEE
Confidence 46789999999999999999987652 233466666665
No 69
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=28.38 E-value=70 Score=23.77 Aligned_cols=39 Identities=8% Similarity=0.115 Sum_probs=31.2
Q ss_pred HHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 20 FCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 20 ~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
-..++.. ..++.|.+.+|+.+.+.+.++|....|.|=..
T Consensus 69 ~aHvv~~--~~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 69 NYHVIRG--ASDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp CHHHHTT--CSEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred CHHHhCC--CcEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 3455544 35799999999999999999999999887544
No 70
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=28.13 E-value=51 Score=22.19 Aligned_cols=51 Identities=8% Similarity=0.040 Sum_probs=36.4
Q ss_pred EEEecCceehhhHHHHHHhcCCcEEEEEEcCCeEEEEEEE--EecCccceEee
Q 034096 8 FSFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVR--AFDRHCNMVLE 58 (104)
Q Consensus 8 ~~~~~~~~~~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~--~fD~~mNLvL~ 58 (104)
|+|.-.+..+--++..+.+..+..+.|.=.=...++|.|. -+|+++..++.
T Consensus 16 ~s~~~~~~~v~~vL~~lA~~~g~nivvs~~V~G~vs~rl~~~~~~q~L~~l~~ 68 (156)
T 3gr5_A 16 YFIITKSSPVRAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSK 68 (156)
T ss_dssp EEEEEEEEEHHHHHHHHHHHTTCCEEECTTCCCEEEEEEEEECHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHhhCCCEEECCCcceEEEEEecCCCHHHHHHHHHH
Confidence 5555566777778889999999988876544566888874 56666665543
No 71
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=27.86 E-value=52 Score=26.77 Aligned_cols=31 Identities=26% Similarity=0.461 Sum_probs=26.6
Q ss_pred cEEEEEEc-CCeEEEEEEEEecCccceEeece
Q 034096 30 LQVLINCR-NNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 30 krV~V~l~-~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
..|.|++. ||+++.+++.++|....|.|=.+
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLkv 128 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLSV 128 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEEE
Confidence 47889885 89999999999999999987543
No 72
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=26.41 E-value=96 Score=22.76 Aligned_cols=32 Identities=13% Similarity=0.319 Sum_probs=27.9
Q ss_pred CcEEEEEEcCCeEEEEEEEEecCccceEeece
Q 034096 29 VLQVLINCRNNKKLLGRVRAFDRHCNMVLENV 60 (104)
Q Consensus 29 ~krV~V~l~~gr~i~G~L~~fD~~mNLvL~d~ 60 (104)
..++.|.+.+|+.+.+.+.++|....|.|=..
T Consensus 69 ~~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l 100 (332)
T 3num_A 69 KHRVKVELKNGATYEAKIKDVDEKADIALIKI 100 (332)
T ss_dssp TSEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCEEEEEEEEecCCCCeEEEEE
Confidence 35799999999999999999999999887543
No 73
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=20.84 E-value=72 Score=24.00 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=18.5
Q ss_pred HhcCCcEEEEE-EcCCeEEEEEEEE
Q 034096 25 LEFIVLQVLIN-CRNNKKLLGRVRA 48 (104)
Q Consensus 25 ~~~l~krV~V~-l~~gr~i~G~L~~ 48 (104)
+...+..|+|+ +.+|+.++|++.+
T Consensus 236 nGa~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 236 NGYLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp CBCTTCEEEEEC--CCCEEEEEEET
T ss_pred cCCCCCEEEEEECCCCCEEEEEEec
Confidence 34678999999 9999999998863
No 74
>2qas_A SSPB, hypothetical protein; SSPB, adaptor, CLPX, unknown function, hydrolase activator; 2.55A {Caulobacter vibrioides} PDB: 2qaz_A
Probab=20.73 E-value=1.3e+02 Score=20.77 Aligned_cols=40 Identities=8% Similarity=-0.023 Sum_probs=27.6
Q ss_pred EEEEEecCceehhhHHHHHHhcCCcEEEEEEcCCeEEEEEEEEecCccceEee
Q 034096 6 IRFSFRNSQTTLMLFCFWALEFIVLQVLINCRNNKKLLGRVRAFDRHCNMVLE 58 (104)
Q Consensus 6 ~~~~~~~~~~~~~l~~~~L~~~l~krV~V~l~~gr~i~G~L~~fD~~mNLvL~ 58 (104)
|+.+|+...+-+.+.-. |++.--..+.|.|+. +||||..+
T Consensus 47 FyITF~T~~pGV~i~d~-L~~~YP~EMTIVLQh------------QF~dL~V~ 86 (157)
T 2qas_A 47 LYITFKTKAAGVSGPQD-LLSKYPDEMTIVLQH------------QYWDLAPG 86 (157)
T ss_dssp EEEEEETTSTTCBCCHH-HHHHSSSEEEEEESS------------SCEEEEEC
T ss_pred EEEEEecCCCCccCCHH-HHhhCCCceEEEEEe------------eecCcEEe
Confidence 67788888776655544 555555689999984 66666653
No 75
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=20.56 E-value=56 Score=22.87 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=25.8
Q ss_pred EEEEEecCccceEeeceEEeeecCCCCCCCcccccccceeeeeCeEEEeCCcEE
Q 034096 44 GRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVI 97 (104)
Q Consensus 44 G~L~~fD~~mNLvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~~~IRGdnVv 97 (104)
=+|.||=++| .++.|..=.++..+++..+ -.++.+-+||..|.
T Consensus 40 ltLKgfKryW-fv~kDt~LsyYKSkEe~~g----------eP~~~inLrGCEVt 82 (165)
T 4bbk_A 40 LMLKACKQYW-FVFKDTSIAYFKNKELEQG----------EPIEKLNLRGCEIV 82 (165)
T ss_dssp ----CCEEEE-EEEETTEEEEESSGGGTTS----------CCSEEEECTTCEEE
T ss_pred cccccceeEE-EEEeCCEEEEEcCHHHhcC----------CCceEEecCccEEe
Confidence 3678999999 7888887666543332111 23678888887765
Done!