BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034099
MAATKSETYTKSYSLLLFALVCFIFLLFQFSTTDPIKASPSKPDSSVTTTSTRFLLNSPS
STSTSTSTVNLHNPKRTPNTPSNGQQLGADEHEVPSGPNPISNR

High Scoring Gene Products

Symbol, full name Information P value
CLE41
AT3G24770
protein from Arabidopsis thaliana 7.8e-07
CLE44
AT4G13195
protein from Arabidopsis thaliana 3.4e-06
TDIF
CLAVATA3/ESR (CLE)-related protein TDIF
protein from Zinnia violacea 5.5e-06
CLE42
CLAVATA3/ESR-RELATED 42
protein from Arabidopsis thaliana 8.1e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034099
        (104 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2087328 - symbol:CLE41 "AT3G24770" species:370...   113  7.8e-07   1
TAIR|locus:505006439 - symbol:CLE44 "AT4G13195" species:3...   107  3.4e-06   1
UNIPROTKB|A1EC31 - symbol:TDIF "CLAVATA3/ESR (CLE)-relate...   105  5.5e-06   1
TAIR|locus:4010713679 - symbol:CLE42 "CLAVATA3/ESR-RELATE...    94  8.1e-05   1


>TAIR|locus:2087328 [details] [associations]
            symbol:CLE41 "AT3G24770" species:3702 "Arabidopsis
            thaliana" [GO:0005102 "receptor binding" evidence=ISS] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0007165 "signal transduction"
            evidence=ISS] [GO:0048046 "apoplast" evidence=IDA;RCA] [GO:0010087
            "phloem or xylem histogenesis" evidence=IDA] [GO:0010067
            "procambium histogenesis" evidence=IDA] [GO:0010089 "xylem
            development" evidence=IDA] [GO:0033612 "receptor serine/threonine
            kinase binding" evidence=IPI] [GO:0010223 "secondary shoot
            formation" evidence=IMP] [GO:0090506 "axillary shoot meristem
            initiation" evidence=IDA] [GO:0006995 "cellular response to
            nitrogen starvation" evidence=RCA] EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0005615 GO:GO:0048046 GO:GO:0010089
            GO:GO:0010067 GO:GO:0045168 EMBL:AB028609 EMBL:BT004087
            EMBL:BT020560 EMBL:AY087469 IPI:IPI00538002 RefSeq:NP_566754.1
            UniGene:At.37466 STRING:Q84W98 EnsemblPlants:AT3G24770.1
            GeneID:822075 KEGG:ath:AT3G24770 TAIR:At3g24770 eggNOG:NOG248994
            HOGENOM:HOG000090395 InParanoid:Q84W98 OMA:GNDAHEV PhylomeDB:Q84W98
            ProtClustDB:CLSN2688745 Genevestigator:Q84W98 GO:GO:0090506
            Uniprot:Q84W98
        Length = 99

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 36/104 (34%), Positives = 48/104 (46%)

Query:     1 MAATKSETYTKS-YSLLLFALVCFIFLLFQFSTTDPIKASPSKPDSSVTTTSTRFLLNXX 59
             MA +  +T TKS +S  L  L  F+ LL   S T P+    S   +S+     R LL   
Sbjct:     1 MATSNDQTNTKSSHSRTLLLLFIFLSLLLFSSLTIPMTRHQS---TSMVAPFKRVLLESS 57

Query:    60 XXXXXXXXXVNLHNPKRTPNTPSNGQQLGADEHEVPSGPNPISN 103
                          + +R+    S  ++ G D HEVPSGPNPISN
Sbjct:    58 VPASSTMDLRPKASTRRSRT--SRRREFGNDAHEVPSGPNPISN 99


>TAIR|locus:505006439 [details] [associations]
            symbol:CLE44 "AT4G13195" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0010087 "phloem or xylem
            histogenesis" evidence=IDA] [GO:0010067 "procambium histogenesis"
            evidence=IDA] [GO:0010089 "xylem development" evidence=IDA]
            [GO:0033612 "receptor serine/threonine kinase binding"
            evidence=IPI] [GO:0048046 "apoplast" evidence=IDA] [GO:0090506
            "axillary shoot meristem initiation" evidence=IDA] GO:GO:0005615
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0048046 GO:GO:0010089
            GO:GO:0010067 GO:GO:0045168 HOGENOM:HOG000090395
            ProtClustDB:CLSN2688745 GO:GO:0090506 EMBL:AY618657 EMBL:AL049751
            EMBL:AL161535 EMBL:AY052261 EMBL:BT002641 EMBL:AY084742
            IPI:IPI00533219 RefSeq:NP_567397.1 UniGene:At.26420 IntAct:Q941C5
            STRING:Q941C5 EnsemblPlants:AT4G13195.1 GeneID:826934
            KEGG:ath:AT4G13195 TAIR:At4g13195 eggNOG:NOG278857
            InParanoid:Q941C5 OMA:LHESSSK PhylomeDB:Q941C5
            Genevestigator:Q941C5 Uniprot:Q941C5
        Length = 112

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 35/112 (31%), Positives = 51/112 (45%)

Query:     1 MAATKSETYTKS--YSLLLFALVCFIFLLFQFSTTDPIKASPSKPDSSVTTT---STRFL 55
             MA T  +T  KS  +  ++  ++  IFL F F        +    +SS   T   S RFL
Sbjct:     1 MATTIDQTSIKSLHFHQVIRLIITIIFLAFLFLIGPTSSMNHHLHESSSKNTMAPSKRFL 60

Query:    56 LNXXXXXXXXXXXVNLHNPKRTPNTPSNGQ----QLGADEHEVPSGPNPISN 103
             L                +P+R+  + S+ +    +  A+ HEVPSGPNPISN
Sbjct:    61 LQPSTPSSSTMKMRPTAHPRRSGTSSSSARKRRREFRAEAHEVPSGPNPISN 112


>UNIPROTKB|A1EC31 [details] [associations]
            symbol:TDIF "CLAVATA3/ESR (CLE)-related protein TDIF"
            species:34245 "Zinnia violacea" [GO:0010067 "procambium
            histogenesis" evidence=ISS] [GO:0010087 "phloem or xylem
            histogenesis" evidence=ISS] [GO:0010089 "xylem development"
            evidence=ISS] [GO:0033612 "receptor serine/threonine kinase
            binding" evidence=ISS] [GO:0045168 "cell-cell signaling involved in
            cell fate commitment" evidence=ISS] [GO:0048046 "apoplast"
            evidence=ISS] GO:GO:0016021 GO:GO:0005886 GO:GO:0005615
            GO:GO:0048046 GO:GO:0010089 GO:GO:0010067 GO:GO:0033612
            GO:GO:0045168 EMBL:EF121243 Uniprot:A1EC31
        Length = 132

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 31/99 (31%), Positives = 43/99 (43%)

Query:     8 TYTKSYSLLLFALVCFIFLLFQFSTTDPIKASPSKPDSSVTTTSTRFLLNXXXXXXXXXX 67
             T  +S S L F  +  I +L     +       S P    T++++    +          
Sbjct:    38 TNPRSCSSLFFVALLIITILITMLQSSTSMEVTSLPTHQPTSSNSH---DESSTSSTATT 94

Query:    68 XVNLHNPKRTPNT--PSNGQQLGADEHEVPSGPNPISNR 104
               +LH PKRT +   P   +   A  HEVPSGPNPISNR
Sbjct:    95 TTDLH-PKRTHHQSHPKPTRSFEAGAHEVPSGPNPISNR 132


>TAIR|locus:4010713679 [details] [associations]
            symbol:CLE42 "CLAVATA3/ESR-RELATED 42" species:3702
            "Arabidopsis thaliana" [GO:0005739 "mitochondrion" evidence=ISM]
            [GO:0033612 "receptor serine/threonine kinase binding"
            evidence=IPI] [GO:0010223 "secondary shoot formation" evidence=IMP]
            [GO:0090506 "axillary shoot meristem initiation" evidence=IDA]
            GO:GO:0005615 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0048046
            EMBL:AC004238 GO:GO:0045168 GO:GO:0090506 EMBL:AY618655
            IPI:IPI00517033 RefSeq:NP_001078005.1 UniGene:At.71419
            STRING:Q6IWB2 EnsemblPlants:AT2G34925.1 GeneID:5007932
            KEGG:ath:AT2G34925 TAIR:At2g34925 eggNOG:NOG286881
            HOGENOM:HOG000142482 OMA:QTHQIGS PhylomeDB:Q6IWB2
            ProtClustDB:CLSN2920152 Genevestigator:Q6IWB2 Uniprot:Q6IWB2
        Length = 88

 Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
 Identities = 18/30 (60%), Positives = 22/30 (73%)

Query:    75 KRTPNTPSNGQQLGADEHEVPSGPNPISNR 104
             +R   T   G+ +GA+EH VPSGPNPISNR
Sbjct:    59 RRPMTTWLKGKMIGANEHGVPSGPNPISNR 88


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.128   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      104        93   0.00091  102 3  11 23  0.39    30
                                                     29  0.41    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  522 (56 KB)
  Total size of DFA:  99 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.60u 0.13s 10.73t   Elapsed:  00:00:01
  Total cpu time:  10.60u 0.13s 10.73t   Elapsed:  00:00:01
  Start:  Fri May 10 14:35:14 2013   End:  Fri May 10 14:35:15 2013

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