Query 034099
Match_columns 104
No_of_seqs 20 out of 22
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 09:46:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034099.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034099hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07172 GRP: Glycine rich pro 83.4 1.1 2.4E-05 31.1 2.5 18 16-33 6-23 (95)
2 KOG3164 Uncharacterized protei 81.6 0.74 1.6E-05 37.5 1.2 16 88-103 192-207 (236)
3 PF09680 Tiny_TM_bacill: Prote 71.6 3.7 7.9E-05 23.3 1.8 15 17-31 7-21 (24)
4 TIGR01732 tiny_TM_bacill conse 71.6 3.6 7.9E-05 23.6 1.9 16 17-32 9-24 (26)
5 PF10669 Phage_Gp23: Protein g 38.6 27 0.00058 26.1 2.1 11 17-27 22-32 (121)
6 PLN02708 Probable pectinestera 36.9 52 0.0011 29.2 4.0 30 18-47 5-35 (553)
7 PF07265 TAP35_44: Tapetum spe 33.2 54 0.0012 24.5 3.0 18 20-37 9-26 (119)
8 PF13956 Ibs_toxin: Toxin Ibs, 32.3 22 0.00048 19.2 0.7 12 19-30 5-16 (19)
9 PF04367 DUF502: Protein of un 31.8 24 0.00051 24.2 0.9 12 91-102 96-107 (108)
10 PF07127 Nodulin_late: Late no 30.6 58 0.0013 19.9 2.5 13 17-29 8-20 (54)
11 COG5374 Uncharacterized conser 30.4 44 0.00095 26.8 2.3 25 9-33 41-67 (192)
12 PF05564 Auxin_repressed: Dorm 28.6 87 0.0019 23.0 3.4 20 80-99 82-101 (119)
13 MTH00261 ATP8 ATP synthase F0 27.1 71 0.0015 21.8 2.6 9 21-29 19-27 (68)
14 PF01004 Flavi_M: Flavivirus e 26.5 52 0.0011 22.4 1.8 13 21-33 62-74 (75)
15 PF13198 DUF4014: Protein of u 25.1 62 0.0013 22.4 2.0 14 15-29 18-31 (72)
16 PF10717 ODV-E18: Occlusion-de 24.2 1.5E+02 0.0032 21.1 3.8 8 23-30 37-44 (85)
17 PF02038 ATP1G1_PLM_MAT8: ATP1 23.4 97 0.0021 20.0 2.6 16 17-32 20-35 (50)
18 PLN00055 photosystem II reacti 23.0 70 0.0015 22.1 1.9 17 17-33 45-61 (73)
19 PLN03207 stomagen; Provisional 22.6 74 0.0016 23.6 2.2 21 82-102 81-102 (113)
20 CHL00066 psbH photosystem II p 22.3 73 0.0016 22.1 1.9 18 17-34 45-62 (73)
21 KOG2678 Predicted membrane pro 21.6 63 0.0014 26.7 1.8 14 8-21 208-222 (244)
22 PHA02973 hypothetical protein; 21.6 64 0.0014 23.6 1.6 7 18-24 3-9 (102)
23 PRK02624 psbH photosystem II r 21.3 80 0.0017 21.4 1.9 18 17-34 33-50 (64)
No 1
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=83.42 E-value=1.1 Score=31.14 Aligned_cols=18 Identities=22% Similarity=0.168 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhccC
Q 034099 16 LLFALVCFIFLLFQFSTT 33 (104)
Q Consensus 16 l~F~~l~fIlllli~~s~ 33 (104)
++||+|||..||||++..
T Consensus 6 ~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 455556666666665443
No 2
>KOG3164 consensus Uncharacterized proteins of PilT N-term./Vapc superfamily [General function prediction only]
Probab=81.65 E-value=0.74 Score=37.54 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=12.9
Q ss_pred CCccccCCCCCCCCCC
Q 034099 88 GADEHEVPSGPNPISN 103 (104)
Q Consensus 88 ~a~kHEVPSGPNPiSN 103 (104)
..-+|.+|+||||+|=
T Consensus 192 ~~kk~k~~k~pNpLs~ 207 (236)
T KOG3164|consen 192 KEKKRKGPKGPNPLSC 207 (236)
T ss_pred hhhcCCCCCCCCCccc
Confidence 4457889999999983
No 3
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=71.60 E-value=3.7 Score=23.26 Aligned_cols=15 Identities=27% Similarity=0.421 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhc
Q 034099 17 LFALVCFIFLLFQFS 31 (104)
Q Consensus 17 ~F~~l~fIlllli~~ 31 (104)
-++.++||||+++.-
T Consensus 7 alivVLFILLiIvG~ 21 (24)
T PF09680_consen 7 ALIVVLFILLIIVGA 21 (24)
T ss_pred hhHHHHHHHHHHhcc
Confidence 456688888887754
No 4
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=71.58 E-value=3.6 Score=23.64 Aligned_cols=16 Identities=25% Similarity=0.386 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhcc
Q 034099 17 LFALVCFIFLLFQFST 32 (104)
Q Consensus 17 ~F~~l~fIlllli~~s 32 (104)
-++.++||||+++..+
T Consensus 9 ~livVLFILLIIiga~ 24 (26)
T TIGR01732 9 ALIVVLFILLVIVGAA 24 (26)
T ss_pred HHHHHHHHHHHHhhee
Confidence 4667888888887643
No 5
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=38.63 E-value=27 Score=26.08 Aligned_cols=11 Identities=45% Similarity=0.860 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 034099 17 LFALVCFIFLL 27 (104)
Q Consensus 17 ~F~~l~fIlll 27 (104)
+|+++|+|||+
T Consensus 22 L~i~~FiILLI 32 (121)
T PF10669_consen 22 LFIVVFIILLI 32 (121)
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 6
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=36.90 E-value=52 Score=29.15 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhccCCC-CcCCCCCCCCCc
Q 034099 18 FALVCFIFLLFQFSTTDP-IKASPSKPDSSV 47 (104)
Q Consensus 18 F~~l~fIlllli~~s~~~-~~~~~~~~~~s~ 47 (104)
|++||+++||+..+.... .++.|-..+++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (553)
T PLN02708 5 LLLLLLSLLLFHSPSSSSNRHHHHHTPSPSP 35 (553)
T ss_pred HHHHHHHHHHHhccccccCcccccCCCCCCC
Confidence 443444444444333333 444444444433
No 7
>PF07265 TAP35_44: Tapetum specific protein TAP35/TAP44; InterPro: IPR009891 This family consists of several plant tapetum specific proteins. Members of this family are found in Arabidopsis thaliana, Brassica napus and Sinapis alba. Members of this family may be involved in sporopollenin formation and/or deposition [].
Probab=33.24 E-value=54 Score=24.52 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhccCCCCc
Q 034099 20 LVCFIFLLFQFSTTDPIK 37 (104)
Q Consensus 20 ~l~fIlllli~~s~~~~~ 37 (104)
.||+|||.+.+++.|+--
T Consensus 9 slcLlll~~ff~sS~pa~ 26 (119)
T PF07265_consen 9 SLCLLLLVVFFLSSQPAL 26 (119)
T ss_pred HHHHHHHHHHHHcCchhh
Confidence 356666666666666543
No 8
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=32.31 E-value=22 Score=19.17 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHh
Q 034099 19 ALVCFIFLLFQF 30 (104)
Q Consensus 19 ~~l~fIlllli~ 30 (104)
+.++++||++.+
T Consensus 5 vIIlvvLLliSf 16 (19)
T PF13956_consen 5 VIILVVLLLISF 16 (19)
T ss_pred hHHHHHHHhccc
Confidence 334444554443
No 9
>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins.
Probab=31.84 E-value=24 Score=24.21 Aligned_cols=12 Identities=50% Similarity=0.767 Sum_probs=9.7
Q ss_pred cccCCCCCCCCC
Q 034099 91 EHEVPSGPNPIS 102 (104)
Q Consensus 91 kHEVPSGPNPiS 102 (104)
.--||+.|||.+
T Consensus 96 ~VfvPtsPnPts 107 (108)
T PF04367_consen 96 AVFVPTSPNPTS 107 (108)
T ss_pred EEEeCCCCCCCC
Confidence 445899999986
No 10
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=30.62 E-value=58 Score=19.93 Aligned_cols=13 Identities=23% Similarity=0.708 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 034099 17 LFALVCFIFLLFQ 29 (104)
Q Consensus 17 ~F~~l~fIlllli 29 (104)
.|+.++|++|+++
T Consensus 8 vY~mIiflslflv 20 (54)
T PF07127_consen 8 VYAMIIFLSLFLV 20 (54)
T ss_pred HHHHHHHHHHHHh
Confidence 4554555544444
No 11
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=30.37 E-value=44 Score=26.78 Aligned_cols=25 Identities=28% Similarity=0.150 Sum_probs=15.3
Q ss_pred cccchhHH--HHHHHHHHHHHHHhccC
Q 034099 9 YTKSYSLL--LFALVCFIFLLFQFSTT 33 (104)
Q Consensus 9 ~~KS~~~l--~F~~l~fIlllli~~s~ 33 (104)
..++-.|. .+++++||+||||-+..
T Consensus 41 ~~~~~~~k~il~i~~~~IllLFiDS~~ 67 (192)
T COG5374 41 SKVYRGFKHILKITFIFILLLFIDSWK 67 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhH
Confidence 34444555 56666777888876543
No 12
>PF05564 Auxin_repressed: Dormancy/auxin associated protein; InterPro: IPR008406 This family contains several plant dormancy-associated and auxin-repressed proteins the function of which is poorly understood [].
Probab=28.56 E-value=87 Score=23.01 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=16.4
Q ss_pred CCCCCCccCCccccCCCCCC
Q 034099 80 TPSNGQQLGADEHEVPSGPN 99 (104)
Q Consensus 80 ~~s~gref~a~kHEVPSGPN 99 (104)
++-+.+..++++.+.|+.||
T Consensus 82 sn~atk~~Ga~~fdkp~~Pn 101 (119)
T PF05564_consen 82 SNLATKSIGANKFDKPSEPN 101 (119)
T ss_pred cccchhhhccccccCCCCCC
Confidence 45677788899999998888
No 13
>MTH00261 ATP8 ATP synthase F0 subunit 8; Provisional
Probab=27.11 E-value=71 Score=21.77 Aligned_cols=9 Identities=22% Similarity=0.729 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 034099 21 VCFIFLLFQ 29 (104)
Q Consensus 21 l~fIlllli 29 (104)
++|||+++|
T Consensus 19 lf~iliili 27 (68)
T MTH00261 19 LFFILIILI 27 (68)
T ss_pred HHHHHHHHH
Confidence 334444443
No 14
>PF01004 Flavi_M: Flavivirus envelope glycoprotein M; InterPro: IPR000069 Flaviviruses are small enveloped viruses with virions comprised of three proteins called C, M and E [, , ]. The envelope glycoprotein M is made as a precursor, called prM. The precursor portion of the protein is the signal peptide for the proteins entry into the membrane. prM is cleaved to form M in a late-stage cleavage event. Associated with this cleavage is a change in the infectivity and fusion activity of the virus.; GO: 0019058 viral infectious cycle, 0019028 viral capsid
Probab=26.52 E-value=52 Score=22.42 Aligned_cols=13 Identities=23% Similarity=0.375 Sum_probs=9.5
Q ss_pred HHHHHHHHHhccC
Q 034099 21 VCFIFLLFQFSTT 33 (104)
Q Consensus 21 l~fIlllli~~s~ 33 (104)
++||++++|-|.+
T Consensus 62 i~iillllvaPaY 74 (75)
T PF01004_consen 62 IFIILLLLVAPAY 74 (75)
T ss_pred HHHHHHHHhcccc
Confidence 3667888887765
No 15
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=25.12 E-value=62 Score=22.38 Aligned_cols=14 Identities=14% Similarity=0.505 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 034099 15 LLLFALVCFIFLLFQ 29 (104)
Q Consensus 15 ~l~F~~l~fIlllli 29 (104)
|++|+ ++|++++.|
T Consensus 18 fLF~i-lfIvlmipI 31 (72)
T PF13198_consen 18 FLFFI-LFIVLMIPI 31 (72)
T ss_pred HHHHH-HHHHHHHHH
Confidence 44444 444444333
No 16
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=24.19 E-value=1.5e+02 Score=21.13 Aligned_cols=8 Identities=38% Similarity=0.866 Sum_probs=3.3
Q ss_pred HHHHHHHh
Q 034099 23 FIFLLFQF 30 (104)
Q Consensus 23 fIlllli~ 30 (104)
||||++++
T Consensus 37 IiLlImlf 44 (85)
T PF10717_consen 37 IILLIMLF 44 (85)
T ss_pred HHHHHHHH
Confidence 33444443
No 17
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.40 E-value=97 Score=19.97 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhcc
Q 034099 17 LFALVCFIFLLFQFST 32 (104)
Q Consensus 17 ~F~~l~fIlllli~~s 32 (104)
.|++|+||+-++|.++
T Consensus 20 i~A~vlfi~Gi~iils 35 (50)
T PF02038_consen 20 IFAGVLFILGILIILS 35 (50)
T ss_dssp HHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 7888899866666554
No 18
>PLN00055 photosystem II reaction center protein H; Provisional
Probab=22.96 E-value=70 Score=22.15 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhccC
Q 034099 17 LFALVCFIFLLFQFSTT 33 (104)
Q Consensus 17 ~F~~l~fIlllli~~s~ 33 (104)
.|.+||++||++|.-.+
T Consensus 45 ~~m~lf~vfl~iileiy 61 (73)
T PLN00055 45 VAMALFAVFLSIILEIY 61 (73)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 67777777776665443
No 19
>PLN03207 stomagen; Provisional
Probab=22.60 E-value=74 Score=23.63 Aligned_cols=21 Identities=29% Similarity=0.599 Sum_probs=15.0
Q ss_pred CCCCccCCccccCCC-CCCCCC
Q 034099 82 SNGQQLGADEHEVPS-GPNPIS 102 (104)
Q Consensus 82 s~gref~a~kHEVPS-GPNPiS 102 (104)
-||-.|+-.+-+||- |-+||.
T Consensus 81 crgcr~kc~~eqvpv~~~dp~n 102 (113)
T PLN03207 81 CRGCRYKCRAEQVPVEGNDPIN 102 (113)
T ss_pred ccCccccccceeccccCCCCCc
Confidence 466678888889995 556663
No 20
>CHL00066 psbH photosystem II protein H
Probab=22.32 E-value=73 Score=22.07 Aligned_cols=18 Identities=11% Similarity=0.174 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhccCC
Q 034099 17 LFALVCFIFLLFQFSTTD 34 (104)
Q Consensus 17 ~F~~l~fIlllli~~s~~ 34 (104)
.|.+||++||++|.-.+-
T Consensus 45 v~m~lf~vfl~iiLeiyN 62 (73)
T CHL00066 45 VAMALFAVFLSIILEIYN 62 (73)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 677777777776654443
No 21
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=21.65 E-value=63 Score=26.72 Aligned_cols=14 Identities=29% Similarity=0.460 Sum_probs=7.3
Q ss_pred ccccch-hHHHHHHH
Q 034099 8 TYTKSY-SLLLFALV 21 (104)
Q Consensus 8 T~~KS~-~~l~F~~l 21 (104)
-+.||+ ++++++++
T Consensus 208 ~y~ksk~s~wf~~~m 222 (244)
T KOG2678|consen 208 KYDKSKLSYWFYITM 222 (244)
T ss_pred HHHHhhhhHHHHHHH
Confidence 456666 55544433
No 22
>PHA02973 hypothetical protein; Provisional
Probab=21.64 E-value=64 Score=23.56 Aligned_cols=7 Identities=43% Similarity=0.899 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 034099 18 FALVCFI 24 (104)
Q Consensus 18 F~~l~fI 24 (104)
|+.++||
T Consensus 3 ~~l~fFi 9 (102)
T PHA02973 3 FLIFFFI 9 (102)
T ss_pred hHHHHHH
Confidence 3334455
No 23
>PRK02624 psbH photosystem II reaction center protein H; Provisional
Probab=21.31 E-value=80 Score=21.44 Aligned_cols=18 Identities=22% Similarity=0.593 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhccCC
Q 034099 17 LFALVCFIFLLFQFSTTD 34 (104)
Q Consensus 17 ~F~~l~fIlllli~~s~~ 34 (104)
.|.+||++||++|.-.+.
T Consensus 33 v~m~Lf~vFl~iiLeIYN 50 (64)
T PRK02624 33 VFMVLFLVFLLIILQIYN 50 (64)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 577777777766654443
Done!