Query 034099
Match_columns 104
No_of_seqs 20 out of 22
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 16:34:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_H Photosystem II reaction 22.5 48 0.0016 21.6 2.0 17 17-33 32-48 (65)
2 1p58_D Envelope protein M; fla 19.8 54 0.0018 21.3 1.8 13 21-33 62-74 (75)
3 3j27_B Matrix protein, small e 18.6 54 0.0019 21.2 1.7 13 21-33 62-74 (75)
4 2jp3_A FXYD domain-containing 13.0 1.3E+02 0.0044 19.6 2.3 16 17-32 23-38 (67)
5 2zxe_G FXYD10, phospholemman-l 11.9 1.6E+02 0.0054 19.5 2.5 17 17-33 25-41 (74)
6 2jo1_A Phospholemman; FXYD1, N 11.9 1.2E+02 0.0041 20.0 2.0 13 17-29 22-34 (72)
7 1xkm_A Distinctin chain A; por 8.8 54 0.0018 18.0 -0.5 7 91-97 2-8 (26)
8 3dl8_E Protein-export membrane 7.6 2.3E+02 0.0078 19.3 2.1 16 17-32 10-25 (107)
9 2d9v_A Pleckstrin homology dom 7.4 1.6E+02 0.0055 18.6 1.2 10 90-99 119-128 (130)
10 3n2f_G Na+/K+ ATPase gamma sub 7.1 2.4E+02 0.0083 15.6 1.7 13 17-29 16-28 (31)
No 1
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=22.50 E-value=48 Score=21.61 Aligned_cols=17 Identities=24% Similarity=0.463 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhccC
Q 034099 17 LFALVCFIFLLFQFSTT 33 (104)
Q Consensus 17 ~F~~l~fIlllli~~s~ 33 (104)
.|.+||++||++|.-.+
T Consensus 32 v~m~Lf~vFl~iiLeIY 48 (65)
T 3arc_H 32 VFMGLFLVFLLIILEIY 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56667777666655444
No 2
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=19.82 E-value=54 Score=21.30 Aligned_cols=13 Identities=23% Similarity=0.289 Sum_probs=8.9
Q ss_pred HHHHHHHHHhccC
Q 034099 21 VCFIFLLFQFSTT 33 (104)
Q Consensus 21 l~fIlllli~~s~ 33 (104)
|++|+++++-|++
T Consensus 62 i~~il~llvaPaY 74 (75)
T 1p58_D 62 LIFILLTAIAPSM 74 (75)
T ss_pred HHHHHHHHhcccc
Confidence 3666778877765
No 3
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=18.62 E-value=54 Score=21.23 Aligned_cols=13 Identities=23% Similarity=0.299 Sum_probs=7.8
Q ss_pred HHHHHHHHHhccC
Q 034099 21 VCFIFLLFQFSTT 33 (104)
Q Consensus 21 l~fIlllli~~s~ 33 (104)
|++|+++++-|++
T Consensus 62 i~iil~llvaPaY 74 (75)
T 3j27_B 62 LIFILLTAVAPSM 74 (75)
T ss_dssp HHHHHHHHHCC--
T ss_pred HHHHHHHHhcccc
Confidence 3666788887764
No 4
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=12.98 E-value=1.3e+02 Score=19.57 Aligned_cols=16 Identities=13% Similarity=-0.025 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhcc
Q 034099 17 LFALVCFIFLLFQFST 32 (104)
Q Consensus 17 ~F~~l~fIlllli~~s 32 (104)
.|.+|+||+=++|-++
T Consensus 23 ifA~vLfi~GI~iilS 38 (67)
T 2jp3_A 23 IFGGLLCIAGIALALS 38 (67)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHc
Confidence 7888888854444443
No 5
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.91 E-value=1.6e+02 Score=19.48 Aligned_cols=17 Identities=12% Similarity=0.124 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhccC
Q 034099 17 LFALVCFIFLLFQFSTT 33 (104)
Q Consensus 17 ~F~~l~fIlllli~~s~ 33 (104)
.|.+|+||+=++|-++.
T Consensus 25 ifA~vLfi~GI~iilS~ 41 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAG 41 (74)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 78888998655555554
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=11.86 E-value=1.2e+02 Score=20.02 Aligned_cols=13 Identities=23% Similarity=0.357 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHH
Q 034099 17 LFALVCFIFLLFQ 29 (104)
Q Consensus 17 ~F~~l~fIlllli 29 (104)
.|.+|+||+=++|
T Consensus 22 ifA~vLfi~GI~i 34 (72)
T 2jo1_A 22 VIAGILFILGILI 34 (72)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888844333
No 7
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=8.80 E-value=54 Score=17.96 Aligned_cols=7 Identities=57% Similarity=1.099 Sum_probs=5.1
Q ss_pred cccCCCC
Q 034099 91 EHEVPSG 97 (104)
Q Consensus 91 kHEVPSG 97 (104)
.+|||.|
T Consensus 2 nrevppg 8 (26)
T 1xkm_A 2 NREVPPG 8 (26)
T ss_dssp TTCSCHH
T ss_pred CCcCCCc
Confidence 4788866
No 8
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=7.62 E-value=2.3e+02 Score=19.30 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhcc
Q 034099 17 LFALVCFIFLLFQFST 32 (104)
Q Consensus 17 ~F~~l~fIlllli~~s 32 (104)
..+++++|+++|++..
T Consensus 10 vIvsi~LI~lVLlQ~g 25 (107)
T 3dl8_E 10 VIIAVVLIISTLLQKG 25 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHheeecC
Confidence 4555666666666543
No 9
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=7.40 E-value=1.6e+02 Score=18.56 Aligned_cols=10 Identities=50% Similarity=0.876 Sum_probs=7.0
Q ss_pred ccccCCCCCC
Q 034099 90 DEHEVPSGPN 99 (104)
Q Consensus 90 ~kHEVPSGPN 99 (104)
....||+||+
T Consensus 119 ~~~~~p~~~~ 128 (130)
T 2d9v_A 119 AGATVPSGPS 128 (130)
T ss_dssp TTSCCCCCCC
T ss_pred CCCCCCCCCC
Confidence 4457888875
No 10
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=7.09 E-value=2.4e+02 Score=15.59 Aligned_cols=13 Identities=38% Similarity=0.593 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHH
Q 034099 17 LFALVCFIFLLFQ 29 (104)
Q Consensus 17 ~F~~l~fIlllli 29 (104)
.|..++||+-+++
T Consensus 16 i~a~vLfi~gi~i 28 (31)
T 3n2f_G 16 IFAALAFIVGLII 28 (31)
T ss_dssp TTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4677777744443
Done!