Query 034099
Match_columns 104
No_of_seqs 20 out of 22
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 16:34:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034099.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034099hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axth1 f.23.33.1 (H:2-65) Pho 12.9 53 0.0038 19.8 2.0 18 17-34 32-49 (64)
2 d2axti1 f.23.37.1 (I:1-35) Pho 9.4 1.1E+02 0.008 16.4 2.4 14 25-38 18-31 (35)
3 d1wjpa1 g.37.1.1 (A:1-42) Zinc 6.5 1E+02 0.0074 17.0 1.4 9 96-104 6-14 (42)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 5.7 1.5E+02 0.011 15.9 1.8 11 17-27 17-27 (37)
5 d2cspa1 b.1.2.1 (A:8-124) Rim 5.4 95 0.007 17.6 0.8 7 94-100 111-117 (117)
6 d1xmeb2 f.17.2.1 (B:3-36) Bact 5.3 1.7E+02 0.013 15.3 1.8 11 19-29 21-31 (34)
7 d2cora1 g.39.1.3 (A:43-73) Pin 4.8 1.1E+02 0.008 16.0 0.7 12 83-94 5-16 (31)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 4.5 2.7E+02 0.02 14.1 2.9 17 19-35 9-27 (30)
9 d1n1ta1 b.29.1.15 (A:413-634) 4.3 60 0.0044 23.3 -0.8 10 92-101 83-92 (222)
10 d1m56d_ f.23.8.1 (D:) Bacteria 4.0 2.8E+02 0.021 15.1 2.2 13 17-29 25-37 (42)
No 1
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=12.87 E-value=53 Score=19.81 Aligned_cols=18 Identities=22% Similarity=0.478 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhccCC
Q 034099 17 LFALVCFIFLLFQFSTTD 34 (104)
Q Consensus 17 ~F~~l~fIlllli~~s~~ 34 (104)
.|.+||++||++|.-.+.
T Consensus 32 v~m~Lf~vfl~iiLeiYN 49 (64)
T d2axth1 32 VFMGLFLVFLLIILEIYN 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 566666666666554443
No 2
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.43 E-value=1.1e+02 Score=16.38 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=8.7
Q ss_pred HHHHHhccCCCCcC
Q 034099 25 FLLFQFSTTDPIKA 38 (104)
Q Consensus 25 lllli~~s~~~~~~ 38 (104)
|++|=+++.+|.+.
T Consensus 18 lFiFGFLSnDP~Rn 31 (35)
T d2axti1 18 LFVFGFLSGDPARN 31 (35)
T ss_dssp HHHHHHHTTCTTCS
T ss_pred HHHHhhccCCCCCC
Confidence 55556677777554
No 3
>d1wjpa1 g.37.1.1 (A:1-42) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.47 E-value=1e+02 Score=17.04 Aligned_cols=9 Identities=44% Similarity=1.014 Sum_probs=6.4
Q ss_pred CCCCCCCCC
Q 034099 96 SGPNPISNR 104 (104)
Q Consensus 96 SGPNPiSNR 104 (104)
||.+|.-||
T Consensus 6 sga~pvenk 14 (42)
T d1wjpa1 6 SGASPVENK 14 (42)
T ss_dssp CCCCCCCCC
T ss_pred CCCCccccc
Confidence 677777775
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.72 E-value=1.5e+02 Score=15.94 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=5.9
Q ss_pred HHHHHHHHHHH
Q 034099 17 LFALVCFIFLL 27 (104)
Q Consensus 17 ~F~~l~fIlll 27 (104)
+|+.|++||.+
T Consensus 17 Ly~GlLlifvl 27 (37)
T d2axtl1 17 LYLGLLLILVL 27 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556666443
No 5
>d2cspa1 b.1.2.1 (A:8-124) Rim binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.41 E-value=95 Score=17.64 Aligned_cols=7 Identities=57% Similarity=1.270 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 034099 94 VPSGPNP 100 (104)
Q Consensus 94 VPSGPNP 100 (104)
||+.|+|
T Consensus 111 vP~~P~P 117 (117)
T d2cspa1 111 VPPTPHP 117 (117)
T ss_dssp SCCCCCC
T ss_pred CCcccCC
Confidence 4444444
No 6
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=5.31 E-value=1.7e+02 Score=15.30 Aligned_cols=11 Identities=18% Similarity=0.501 Sum_probs=5.6
Q ss_pred HHHHHHHHHHH
Q 034099 19 ALVCFIFLLFQ 29 (104)
Q Consensus 19 ~~l~fIlllli 29 (104)
++.+|+|+-+|
T Consensus 21 lamlfvfiali 31 (34)
T d1xmeb2 21 LAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555554
No 7
>d2cora1 g.39.1.3 (A:43-73) Pinch (particularly interesting new Cys-His) protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.83 E-value=1.1e+02 Score=15.99 Aligned_cols=12 Identities=42% Similarity=0.667 Sum_probs=9.5
Q ss_pred CCCccCCccccC
Q 034099 83 NGQQLGADEHEV 94 (104)
Q Consensus 83 ~gref~a~kHEV 94 (104)
-|+|+-+++||.
T Consensus 5 CgkeltadArEl 16 (31)
T d2cora1 5 CGKELTADAREL 16 (31)
T ss_dssp SCCBCCTTCEEE
T ss_pred cccccchhHHHh
Confidence 478888888885
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.50 E-value=2.7e+02 Score=14.14 Aligned_cols=17 Identities=29% Similarity=0.694 Sum_probs=7.9
Q ss_pred HHHHHH--HHHHHhccCCC
Q 034099 19 ALVCFI--FLLFQFSTTDP 35 (104)
Q Consensus 19 ~~l~fI--lllli~~s~~~ 35 (104)
+..|+| |++-|+.--+|
T Consensus 9 ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 9 IFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 333666 44445544443
No 9
>d1n1ta1 b.29.1.15 (A:413-634) Trypanosoma sialidase, C-terminal domain {Trypanosoma rangeli [TaxId: 5698]}
Probab=4.30 E-value=60 Score=23.26 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=0.0
Q ss_pred ccCCCCCCCC
Q 034099 92 HEVPSGPNPI 101 (104)
Q Consensus 92 HEVPSGPNPi 101 (104)
||||.|..|+
T Consensus 83 ~~vP~g~~PL 92 (222)
T d1n1ta1 83 DELPKGTSPL 92 (222)
T ss_dssp CSCCSSEEEE
T ss_pred ccccCCCCcc
No 10
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.99 E-value=2.8e+02 Score=15.06 Aligned_cols=13 Identities=31% Similarity=0.327 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 034099 17 LFALVCFIFLLFQ 29 (104)
Q Consensus 17 ~F~~l~fIlllli 29 (104)
++..+++++|+|+
T Consensus 25 ~~~i~~i~~lifl 37 (42)
T d1m56d_ 25 WAAVVIVAALIFL 37 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Done!