BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034101
(104 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GUZ|A Chain A, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|C Chain C, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|E Chain E, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|G Chain G, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|I Chain I, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|K Chain K, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|M Chain M, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|O Chain O, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
Length = 71
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Query: 32 FYEGGFQPVMTRREAALILGVRESTPTEK-VKEAHRRVMVANHPDAGGSHYLASKINEAK 90
F +GGF P M +EA IL + E+T T+K +KE HR++M+ANHPD GGS +LA+KINEAK
Sbjct: 2 FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAK 61
Query: 91 DIMLRR 96
D + +R
Sbjct: 62 DFLEKR 67
>pdb|2GUZ|B Chain B, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|D Chain D, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|F Chain F, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|H Chain H, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|J Chain J, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|L Chain L, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|N Chain N, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
pdb|2GUZ|P Chain P, Structure Of The Tim14-tim16 Complex Of The
Mitochondrial Protein Import Motor
Length = 65
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 41 MTRREAALILGVRES---TPTEKVKEAHRRVMVANHPDAGGSHYLASKI 86
MT E+ IL + ES +K+ + N + GGS YL SK+
Sbjct: 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKV 49
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPD 75
ILGV E +K+A+RR+ + HPD
Sbjct: 12 ILGVSRGASDEDLKKAYRRLALKFHPD 38
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPD 75
+LGV+ S E +K+A+R++ + HPD
Sbjct: 14 VLGVQASASPEDIKKAYRKLALRWHPD 40
>pdb|1FAF|A Chain A, Nmr Structure Of The N-Terminal J Domain Of Murine
Polyomavirus T Antigens
Length = 79
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 60 KVKEAHRRVMVANHPDAGGSHYLASKIN 87
++++A+++ + HPD GGSH L ++N
Sbjct: 29 RMQQAYKQQSLLLHPDKGGSHALMQELN 56
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPD 75
+LGV+ + E++K+A+R++ + HPD
Sbjct: 11 VLGVKPNATQEELKKAYRKLALKYHPD 37
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLAS----KINEAKDIMLRRTK 98
+LG+ ++ ++ +K+++R++ + HPD + A+ +IN A I+ TK
Sbjct: 22 VLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATK 75
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human Ras-
Associated Protein Rap1
Length = 90
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPD---AGGSHYLASKINEAKDIMLRRTKGSNSA 103
+LGV+ ++V +A+R++ V HPD A GS + A+ +L+ K S+
Sbjct: 32 MLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPSS 89
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 50 LGVRESTPTEKVKEAHRRVMVANHPDAG---GSHYLASKINEAKDIM 93
LG+ E++K A+RR + HPD G+ +I EA D++
Sbjct: 9 LGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVL 55
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPD 75
ILGV ++ ++++A++R+ + HPD
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPD 34
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPD 75
ILGV ++ ++++A++R+ + HPD
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPD 34
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPD 75
+R+ ILGV+ + +++ +A+R++ + HPD
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPD 75
+R+ ILGV+ + +++ +A+R++ + HPD
Sbjct: 381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPD 75
ILGV ++ ++++A++R+ + HPD
Sbjct: 8 ILGVSKTAEEREIRKAYKRLAMKYHPD 34
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAK 90
M ++ ILGV+ + + +K A+RR+ HPD SK N+A+
Sbjct: 25 MELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPD-------VSKENDAE 67
>pdb|3GKM|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped IntermediateLIGAND COMPLEX
STRUCTURES
Length = 163
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 49 ILGVREST----PTEKVKEAHRRVMVANHPDA 76
+LG+ ST P +V +A R+V VA H DA
Sbjct: 121 VLGIERSTFLLSPEGQVVQAWRKVKVAGHADA 152
>pdb|3GKK|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped IntermediateLIGAND COMPLEX
STRUCTURES
Length = 163
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 49 ILGVREST----PTEKVKEAHRRVMVANHPDA 76
+LG+ ST P +V +A R+V VA H DA
Sbjct: 121 VLGIERSTFLLSPEGQVVQAWRKVKVAGHADA 152
>pdb|3GKN|A Chain A, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped Intermediate/ligand Complex
Structures
pdb|3GKN|B Chain B, Insights Into The Alkyl Peroxide Reduction Activity Of
Xanthomonas Campestris Bacterioferritin Comigratory
Protein From The Trapped Intermediate/ligand Complex
Structures
Length = 163
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
Query: 49 ILGVREST----PTEKVKEAHRRVMVANHPDA 76
+LG+ ST P +V +A R+V VA H DA
Sbjct: 121 VLGIERSTFLLSPEGQVVQAWRKVKVAGHADA 152
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPDAG----GSHYLASKINEAKDIM 93
+LGV ++ + ++++A +++ + HPD +H KIN A +++
Sbjct: 26 LLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 74
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPD 75
+LGV+ ++K+A+R++ + HPD
Sbjct: 13 VLGVKPDASDNELKKAYRKMALKFHPD 39
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 49 ILGVRESTPTEKVKEAHRRVMVANHPDAG----GSHYLASKINEAKDIM 93
+LGV ++ + ++++A +++ + HPD +H KIN A +++
Sbjct: 7 LLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVL 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,790,028
Number of Sequences: 62578
Number of extensions: 86957
Number of successful extensions: 348
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 331
Number of HSP's gapped (non-prelim): 24
length of query: 104
length of database: 14,973,337
effective HSP length: 69
effective length of query: 35
effective length of database: 10,655,455
effective search space: 372940925
effective search space used: 372940925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)