Query 034101
Match_columns 104
No_of_seqs 113 out of 1323
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:47:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0723 Molecular chaperone (D 99.9 1.3E-25 2.8E-30 147.5 10.0 98 1-98 9-110 (112)
2 PTZ00100 DnaJ chaperone protei 99.9 5.6E-24 1.2E-28 142.5 11.5 94 2-95 9-116 (116)
3 PF03656 Pam16: Pam16; InterP 99.9 3.8E-22 8.2E-27 135.6 5.9 98 1-98 9-112 (127)
4 COG0484 DnaJ DnaJ-class molecu 99.8 1E-18 2.2E-23 136.1 5.5 60 41-100 1-64 (371)
5 KOG3442 Uncharacterized conser 99.7 9E-18 2E-22 113.0 6.4 98 1-98 8-113 (132)
6 PHA03102 Small T antigen; Revi 99.7 8.7E-17 1.9E-21 112.4 6.7 59 43-101 4-64 (153)
7 KOG0713 Molecular chaperone (D 99.7 3.6E-17 7.9E-22 125.5 5.1 63 38-100 10-76 (336)
8 PTZ00037 DnaJ_C chaperone prot 99.7 6.6E-17 1.4E-21 128.1 6.6 63 38-100 22-84 (421)
9 smart00271 DnaJ DnaJ molecular 99.6 6.8E-16 1.5E-20 91.0 6.3 53 45-97 2-59 (60)
10 PRK14296 chaperone protein Dna 99.6 3.2E-16 6.9E-21 122.3 5.7 60 41-100 1-63 (372)
11 cd06257 DnaJ DnaJ domain or J- 99.6 1.7E-15 3.6E-20 87.7 6.2 51 45-95 1-55 (55)
12 PF00226 DnaJ: DnaJ domain; I 99.6 3E-15 6.6E-20 89.5 5.8 56 45-100 1-61 (64)
13 PRK14288 chaperone protein Dna 99.6 1.3E-15 2.8E-20 118.8 5.3 57 44-100 3-63 (369)
14 PRK14286 chaperone protein Dna 99.6 1.8E-15 3.9E-20 118.1 5.4 60 41-100 1-64 (372)
15 PRK14279 chaperone protein Dna 99.6 2.8E-15 6E-20 117.8 5.9 58 43-100 8-69 (392)
16 PRK14299 chaperone protein Dna 99.6 2.6E-15 5.7E-20 113.8 5.5 60 41-100 1-63 (291)
17 PRK14287 chaperone protein Dna 99.6 3.6E-15 7.8E-20 116.4 5.8 60 41-100 1-63 (371)
18 PRK14282 chaperone protein Dna 99.6 3.7E-15 8.1E-20 116.1 5.6 60 41-100 1-65 (369)
19 PRK14276 chaperone protein Dna 99.6 5.4E-15 1.2E-19 115.7 5.8 60 41-100 1-63 (380)
20 PRK14298 chaperone protein Dna 99.5 9.4E-15 2E-19 114.3 6.0 58 43-100 4-64 (377)
21 KOG0712 Molecular chaperone (D 99.5 5.7E-15 1.2E-19 114.0 4.6 56 45-100 5-61 (337)
22 PRK14285 chaperone protein Dna 99.5 8.7E-15 1.9E-19 114.0 5.7 57 44-100 3-63 (365)
23 PRK14280 chaperone protein Dna 99.5 9.4E-15 2E-19 114.2 5.5 60 41-100 1-63 (376)
24 PRK14301 chaperone protein Dna 99.5 1E-14 2.2E-19 113.9 5.7 60 41-100 1-64 (373)
25 PRK10767 chaperone protein Dna 99.5 9.6E-15 2.1E-19 113.8 5.5 60 41-100 1-64 (371)
26 PRK14294 chaperone protein Dna 99.5 8.5E-15 1.8E-19 114.0 5.2 60 41-100 1-64 (366)
27 PRK14283 chaperone protein Dna 99.5 1E-14 2.2E-19 114.0 5.6 58 43-100 4-64 (378)
28 PRK14297 chaperone protein Dna 99.5 1.5E-14 3.2E-19 113.2 6.0 59 42-100 2-64 (380)
29 PRK14278 chaperone protein Dna 99.5 1E-14 2.2E-19 114.0 5.1 57 44-100 3-62 (378)
30 PRK14295 chaperone protein Dna 99.5 1.7E-14 3.7E-19 113.2 5.9 57 44-100 9-69 (389)
31 PRK14277 chaperone protein Dna 99.5 1.8E-14 3.8E-19 113.0 5.4 57 44-100 5-65 (386)
32 PRK10266 curved DNA-binding pr 99.5 2E-14 4.3E-19 109.6 5.5 60 41-100 1-63 (306)
33 PRK14281 chaperone protein Dna 99.5 2.9E-14 6.2E-19 112.2 6.1 57 44-100 3-63 (397)
34 PRK14291 chaperone protein Dna 99.5 4.2E-14 9.2E-19 110.7 6.1 57 44-100 3-62 (382)
35 PHA02624 large T antigen; Prov 99.5 6.6E-14 1.4E-18 115.0 7.2 60 43-102 10-71 (647)
36 PRK14300 chaperone protein Dna 99.5 6.9E-14 1.5E-18 109.2 6.2 57 44-100 3-62 (372)
37 PRK14284 chaperone protein Dna 99.5 8.4E-14 1.8E-18 109.3 5.4 56 45-100 2-61 (391)
38 TIGR02349 DnaJ_bact chaperone 99.5 1E-13 2.3E-18 107.3 5.8 56 45-100 1-59 (354)
39 PRK14290 chaperone protein Dna 99.4 1.1E-13 2.5E-18 107.7 5.8 57 44-100 3-64 (365)
40 PRK09430 djlA Dna-J like membr 99.4 2.9E-13 6.3E-18 101.8 7.5 58 39-96 195-263 (267)
41 PRK14289 chaperone protein Dna 99.4 1.1E-13 2.4E-18 108.3 5.4 58 43-100 4-65 (386)
42 PRK14292 chaperone protein Dna 99.4 1.8E-13 3.9E-18 106.6 6.6 57 44-100 2-61 (371)
43 KOG0717 Molecular chaperone (D 99.4 1.8E-13 3.9E-18 108.8 6.1 59 42-100 6-69 (508)
44 KOG0721 Molecular chaperone (D 99.4 1.5E-13 3.2E-18 100.5 5.1 57 45-101 100-160 (230)
45 KOG0716 Molecular chaperone (D 99.4 3.9E-13 8.4E-18 100.9 7.2 59 42-100 29-91 (279)
46 KOG0718 Molecular chaperone (D 99.4 2.9E-13 6.3E-18 107.9 6.3 60 41-100 6-72 (546)
47 KOG0715 Molecular chaperone (D 99.4 2.4E-13 5.1E-18 103.3 5.1 62 39-100 38-102 (288)
48 PRK14293 chaperone protein Dna 99.4 3.4E-13 7.3E-18 105.3 5.4 57 44-100 3-62 (374)
49 KOG0691 Molecular chaperone (D 99.4 7.9E-13 1.7E-17 100.8 5.2 58 43-100 4-65 (296)
50 PTZ00341 Ring-infected erythro 99.3 1.8E-12 3.9E-17 110.5 5.8 60 41-100 570-632 (1136)
51 COG2214 CbpA DnaJ-class molecu 99.3 4.3E-12 9.4E-17 88.8 6.0 58 43-100 5-67 (237)
52 PRK05014 hscB co-chaperone Hsc 99.3 1.1E-11 2.3E-16 88.1 5.7 56 45-100 2-68 (171)
53 PRK01356 hscB co-chaperone Hsc 99.2 1.2E-11 2.7E-16 87.4 5.4 56 45-100 3-67 (166)
54 TIGR03835 termin_org_DnaJ term 99.2 1.1E-11 2.4E-16 103.7 5.5 57 44-100 2-61 (871)
55 KOG0719 Molecular chaperone (D 99.2 9.8E-12 2.1E-16 92.0 4.3 56 45-100 15-76 (264)
56 PRK00294 hscB co-chaperone Hsc 99.2 2.6E-11 5.6E-16 86.3 5.6 59 42-100 2-71 (173)
57 PRK03578 hscB co-chaperone Hsc 99.2 3.5E-11 7.6E-16 85.8 5.9 57 44-100 6-73 (176)
58 KOG0722 Molecular chaperone (D 99.1 5.4E-11 1.2E-15 89.4 3.1 59 42-100 31-92 (329)
59 KOG1789 Endocytosis protein RM 99.1 6.8E-10 1.5E-14 95.9 9.5 73 9-94 1259-1336(2235)
60 KOG0720 Molecular chaperone (D 99.0 1.7E-10 3.7E-15 91.9 4.1 57 44-100 235-294 (490)
61 KOG0624 dsRNA-activated protei 99.0 6.1E-10 1.3E-14 87.3 4.7 60 42-101 392-458 (504)
62 PRK01773 hscB co-chaperone Hsc 98.9 1.9E-09 4.2E-14 76.7 4.8 56 45-100 3-69 (173)
63 KOG0550 Molecular chaperone (D 98.8 3.4E-09 7.4E-14 84.1 4.2 60 43-102 372-436 (486)
64 COG5407 SEC63 Preprotein trans 98.8 9.8E-09 2.1E-13 82.3 5.7 62 33-101 94-164 (610)
65 KOG0714 Molecular chaperone (D 98.8 6E-09 1.3E-13 76.1 3.7 57 44-100 3-64 (306)
66 TIGR00714 hscB Fe-S protein as 98.8 1.5E-08 3.2E-13 71.1 5.0 45 56-100 3-56 (157)
67 KOG1150 Predicted molecular ch 98.7 1.6E-08 3.5E-13 73.9 3.9 53 45-97 54-111 (250)
68 KOG0568 Molecular chaperone (D 98.6 1.1E-07 2.4E-12 71.1 6.0 52 43-94 46-101 (342)
69 COG5269 ZUO1 Ribosome-associat 97.9 2.2E-05 4.7E-10 60.0 4.9 57 44-100 43-108 (379)
70 COG1076 DjlA DnaJ-domain-conta 97.5 0.00013 2.7E-09 51.8 3.9 50 44-93 113-173 (174)
71 PF13446 RPT: A repeated domai 97.4 0.0012 2.7E-08 39.0 6.5 48 41-95 2-49 (62)
72 KOG3192 Mitochondrial J-type c 96.8 0.0027 5.8E-08 44.9 4.5 58 43-100 7-75 (168)
73 KOG0431 Auxilin-like protein a 96.2 0.0059 1.3E-07 49.4 4.0 22 55-76 399-420 (453)
74 PF11833 DUF3353: Protein of u 95.1 0.07 1.5E-06 38.7 5.5 40 53-96 1-40 (194)
75 COG1076 DjlA DnaJ-domain-conta 94.6 0.022 4.8E-07 40.3 2.0 44 56-99 15-67 (174)
76 PF14687 DUF4460: Domain of un 86.8 0.98 2.1E-05 30.0 3.3 42 55-96 5-54 (112)
77 KOG0724 Zuotin and related mol 66.1 9.9 0.00021 29.1 3.9 43 56-98 4-54 (335)
78 COG5552 Uncharacterized conser 64.9 32 0.00069 21.6 5.9 27 47-73 6-32 (88)
79 PF11300 DUF3102: Protein of u 58.6 18 0.0004 24.7 3.7 17 39-55 88-104 (130)
80 PF03820 Mtc: Tricarboxylate c 55.5 23 0.00049 27.5 4.2 38 40-77 26-69 (308)
81 KOG3767 Sideroflexin [General 54.0 21 0.00045 28.1 3.7 36 42-77 46-87 (328)
82 PF13543 KSR1-SAM: SAM like do 52.7 71 0.0015 21.8 5.8 57 37-93 63-128 (129)
83 KOG2320 RAS effector RIN1 (con 50.6 22 0.00049 30.2 3.6 43 49-96 394-436 (651)
84 PF12728 HTH_17: Helix-turn-he 47.9 15 0.00033 20.0 1.7 15 41-55 2-16 (51)
85 TIGR01764 excise DNA binding d 45.6 14 0.00031 19.3 1.3 14 41-54 2-15 (49)
86 COG1072 CoaA Panthothenate kin 44.1 62 0.0013 25.0 4.9 37 37-73 21-57 (283)
87 PHA01083 hypothetical protein 42.1 96 0.0021 21.8 5.2 41 33-73 36-89 (149)
88 cd01388 SOX-TCF_HMG-box SOX-TC 40.5 53 0.0011 19.3 3.4 35 63-98 14-48 (72)
89 PF08447 PAS_3: PAS fold; Int 39.3 11 0.00024 22.1 0.2 29 44-76 6-35 (91)
90 PF14893 PNMA: PNMA 38.2 24 0.00052 27.7 2.0 29 39-67 13-41 (331)
91 KOG3960 Myogenic helix-loop-he 38.2 23 0.0005 27.1 1.8 16 81-96 128-143 (284)
92 PRK05439 pantothenate kinase; 38.2 1.2E+02 0.0025 23.6 5.7 37 36-72 24-60 (311)
93 PF04967 HTH_10: HTH DNA bindi 38.2 39 0.00084 19.4 2.4 32 38-69 21-52 (53)
94 PF07739 TipAS: TipAS antibiot 38.1 57 0.0012 20.5 3.5 38 50-90 50-88 (118)
95 smart00427 H2B Histone H2B. 36.8 49 0.0011 21.2 2.9 16 65-80 7-22 (89)
96 PF01466 Skp1: Skp1 family, di 36.2 55 0.0012 19.8 3.0 24 40-63 45-68 (78)
97 PRK09649 RNA polymerase sigma 35.3 40 0.00088 23.2 2.6 37 39-75 145-181 (185)
98 PF03206 NifW: Nitrogen fixati 34.6 1.3E+02 0.0029 19.7 6.6 56 40-95 11-76 (105)
99 PRK13798 putative OHCU decarbo 34.0 49 0.0011 23.3 2.8 12 81-92 99-110 (166)
100 PRK00810 nifW nitrogenase stab 32.0 1.6E+02 0.0034 19.7 5.8 55 40-94 15-78 (113)
101 PRK12547 RNA polymerase sigma 31.8 56 0.0012 21.9 2.8 14 42-55 130-143 (164)
102 TIGR03759 conj_TIGR03759 integ 31.6 66 0.0014 23.6 3.2 70 15-95 17-87 (200)
103 COG3755 Uncharacterized protei 31.5 62 0.0013 22.1 2.9 36 56-94 48-84 (127)
104 PF05344 DUF746: Domain of Unk 31.2 93 0.002 18.8 3.3 38 38-76 11-48 (65)
105 cd04762 HTH_MerR-trunc Helix-T 31.1 34 0.00073 17.6 1.3 14 41-54 1-14 (49)
106 PF07709 SRR: Seven Residue Re 30.7 49 0.0011 13.7 1.5 11 83-93 3-13 (14)
107 PF11126 Phage_DsbA: Transcrip 29.9 86 0.0019 19.2 3.0 42 45-94 25-67 (69)
108 TIGR00824 EIIA-man PTS system, 29.7 1.2E+02 0.0026 19.7 4.0 36 47-82 30-74 (116)
109 PRK12529 RNA polymerase sigma 29.6 65 0.0014 22.0 2.9 29 40-68 143-171 (178)
110 PF13950 Epimerase_Csub: UDP-g 28.8 1.3E+02 0.0027 17.5 3.9 33 42-75 28-60 (62)
111 PF13374 TPR_10: Tetratricopep 28.6 41 0.00089 16.6 1.3 17 59-75 26-42 (42)
112 TIGR00554 panK_bact pantothena 28.3 1.3E+02 0.0028 23.0 4.5 36 38-73 2-37 (290)
113 cd04761 HTH_MerR-SF Helix-Turn 27.7 40 0.00088 17.7 1.3 30 41-76 1-30 (49)
114 PF00505 HMG_box: HMG (high mo 27.2 80 0.0017 17.8 2.6 35 62-97 12-46 (69)
115 cd01390 HMGB-UBF_HMG-box HMGB- 26.8 1.2E+02 0.0027 16.8 3.4 35 63-98 13-47 (66)
116 cd06170 LuxR_C_like C-terminal 26.6 66 0.0014 17.0 2.0 30 39-72 14-43 (57)
117 PF04282 DUF438: Family of unk 26.1 37 0.00081 20.8 1.0 26 49-74 6-31 (71)
118 PRK08570 rpl19e 50S ribosomal 26.0 1.5E+02 0.0032 20.9 4.0 36 56-91 36-71 (150)
119 TIGR03180 UraD_2 OHCU decarbox 25.8 82 0.0018 21.9 2.8 11 81-91 94-104 (158)
120 PRK09636 RNA polymerase sigma 25.2 1.6E+02 0.0034 21.9 4.5 33 39-71 130-162 (293)
121 PF14019 DUF4235: Protein of u 25.1 75 0.0016 19.5 2.2 21 2-22 9-29 (78)
122 PF00076 RRM_1: RNA recognitio 25.0 67 0.0014 17.6 1.9 22 50-71 4-25 (70)
123 smart00421 HTH_LUXR helix_turn 24.6 77 0.0017 16.6 2.1 30 39-72 17-46 (58)
124 TIGR03164 UHCUDC OHCU decarbox 24.3 1.1E+02 0.0025 21.2 3.3 11 81-91 94-104 (157)
125 cd00084 HMG-box High Mobility 23.6 1.4E+02 0.003 16.3 3.4 36 62-98 12-47 (66)
126 PF05379 Peptidase_C23: Carlav 23.4 77 0.0017 20.0 2.1 54 2-55 7-60 (89)
127 PLN00158 histone H2B; Provisio 23.2 1.2E+02 0.0025 20.5 3.0 17 64-80 32-48 (116)
128 PTZ00463 histone H2B; Provisio 23.1 1.2E+02 0.0026 20.5 3.0 16 65-80 34-49 (117)
129 PF04545 Sigma70_r4: Sigma-70, 22.0 68 0.0015 17.2 1.5 28 38-69 18-45 (50)
130 PF10041 DUF2277: Uncharacteri 21.9 2.1E+02 0.0047 17.8 5.9 51 48-98 7-64 (78)
131 cd01389 MATA_HMG-box MATA_HMG- 21.7 1.8E+02 0.0039 17.1 3.5 35 62-97 13-47 (77)
132 KOG3219 Transcription initiati 21.7 97 0.0021 22.7 2.6 28 44-71 151-181 (195)
133 PF08281 Sigma70_r4_2: Sigma-7 21.4 54 0.0012 17.8 1.0 26 38-67 24-49 (54)
134 PF08988 DUF1895: Protein of u 21.4 1.4E+02 0.0031 18.0 2.9 20 75-94 35-54 (68)
135 KOG1573 Aldehyde reductase [Ge 21.4 2.4E+02 0.0052 20.4 4.5 41 36-76 68-115 (204)
136 PF15178 TOM_sub5: Mitochondri 20.7 1.3E+02 0.0028 17.1 2.4 23 48-70 3-25 (51)
137 COG4930 Predicted ATP-dependen 20.2 4.9E+02 0.011 21.9 6.5 67 7-87 379-445 (683)
138 PTZ00436 60S ribosomal protein 20.2 2E+02 0.0042 22.8 4.1 36 56-91 36-71 (357)
139 PRK00665 petG cytochrome b6-f 20.1 1.5E+02 0.0033 15.9 2.5 16 9-24 18-33 (37)
140 PF14138 COX16: Cytochrome c o 20.1 2.3E+02 0.005 17.5 4.3 20 2-21 10-29 (80)
141 PF04512 Baculo_PEP_N: Baculov 20.0 98 0.0021 20.1 2.1 33 42-75 18-50 (97)
No 1
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.3e-25 Score=147.50 Aligned_cols=98 Identities=60% Similarity=0.929 Sum_probs=91.6
Q ss_pred ChHhHHHHHHHHHHH----HHHHHHhCCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 034101 1 MAVAAAAYAGKYGIR----AWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDA 76 (104)
Q Consensus 1 ~~ia~~~~~~ra~~~----A~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk 76 (104)
++|+++++.||++++ +|+.+...+..+.+.+||.++|++.||..||..||||+++++.+.||++||+++..||||+
T Consensus 9 ~gvaa~a~ag~~gl~~~~~~~qa~~~~~~~~~~~~~y~GGF~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~ 88 (112)
T KOG0723|consen 9 LGVAALAFAGRYGLWMKTLAKQAFKTLPKGPFFGAFYKGGFEPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDR 88 (112)
T ss_pred HHHHHHHHhchhhhhchhHHHHHHHHcCCCcchhhhhhcccccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcC
Confidence 367888999999999 8888888888888899999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccccc
Q 034101 77 GGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 77 ~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
|||||...+||+|+++|+....
T Consensus 89 GGSPYlAsKINEAKdlLe~~~~ 110 (112)
T KOG0723|consen 89 GGSPYLASKINEAKDLLEGTSL 110 (112)
T ss_pred CCCHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999986543
No 2
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.91 E-value=5.6e-24 Score=142.49 Aligned_cols=94 Identities=36% Similarity=0.610 Sum_probs=81.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHhCCCchh----------hhhh----hcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHH
Q 034101 2 AVAAAAYAGKYGIRAWQAFKARPPTAR----------MRKF----YEGGFQPVMTRREAALILGVRESTPTEKVKEAHRR 67 (104)
Q Consensus 2 ~ia~~~~~~ra~~~A~~~~~~~~~~~~----------~~~~----~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~ 67 (104)
++.++.+++|+++++|++....++... .+.+ ...++...|+.+|||+||||+++++.+||+++||+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~f~~~Ms~~eAy~ILGv~~~As~~eIkkaYRr 88 (116)
T PTZ00100 9 TFGGGVLAVRYGYRYLKNQKIFGSNNMSFPLSGFNPSLGSLFLKNDLKGFENPMSKSEAYKILNISPTASKERIREAHKQ 88 (116)
T ss_pred HHhHHHHHHHHHHHHHHHHhhccCccccCCchhhhHHHHHHHhccccccccCCCCHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 455668999999999998887654221 2332 25689999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 034101 68 VMVANHPDAGGSHYLASKINEAKDIMLR 95 (104)
Q Consensus 68 l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 95 (104)
|++++|||++||++.+++|++||++|.+
T Consensus 89 La~~~HPDkgGs~~~~~kIneAyevL~k 116 (116)
T PTZ00100 89 LMLRNHPDNGGSTYIASKVNEAKDLLLK 116 (116)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999963
No 3
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=99.86 E-value=3.8e-22 Score=135.61 Aligned_cols=98 Identities=28% Similarity=0.354 Sum_probs=48.0
Q ss_pred ChHhHHHHHHHHHHHHHHHHHhCCCchh-h-hhh----hcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCC
Q 034101 1 MAVAAAAYAGKYGIRAWQAFKARPPTAR-M-RKF----YEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHP 74 (104)
Q Consensus 1 ~~ia~~~~~~ra~~~A~~~~~~~~~~~~-~-~~~----~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HP 74 (104)
|+|+|+.++||||.+||||+..+.+... + +.. ........||.+||++||||++..+.++|.+.|.+|+..|+|
T Consensus 9 iiv~G~~vvgRAf~~AyrQA~aa~~~a~~a~~~a~~~~~a~~~~~~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~ 88 (127)
T PF03656_consen 9 IIVTGGQVVGRAFTQAYRQAAAAAQAAAGAGQNASARGAAASNSKGMTLDEARQILNVKEELSREEIQKRYKHLFKANDP 88 (127)
T ss_dssp ------------------------------------------------HHHHHHHHT--G--SHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCC
Confidence 5899999999999999999995433211 1 111 111234589999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhccccc
Q 034101 75 DAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 75 Dk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
++|||+|++++|..|+++|..+.+
T Consensus 89 ~kGGSfYLQSKV~rAKErl~~El~ 112 (127)
T PF03656_consen 89 SKGGSFYLQSKVFRAKERLEQELK 112 (127)
T ss_dssp CCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 4
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1e-18 Score=136.11 Aligned_cols=60 Identities=30% Similarity=0.432 Sum_probs=55.6
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|...++|+||||+.++|.+|||+|||+|+++||||+|. + .++|++|++|||+|+|++||+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa 64 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 45568899999999999999999999999999999986 4 589999999999999999986
No 5
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=9e-18 Score=112.95 Aligned_cols=98 Identities=26% Similarity=0.325 Sum_probs=81.7
Q ss_pred ChHhHHHHHHHHHHHHHHHHHhCCCchhhhhh--------hcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 034101 1 MAVAAAAYAGKYGIRAWQAFKARPPTARMRKF--------YEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVAN 72 (104)
Q Consensus 1 ~~ia~~~~~~ra~~~A~~~~~~~~~~~~~~~~--------~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~ 72 (104)
|||+|+.++||||.+||||...+.......+- -.......||.+||.+||+|++..+.++|.+.|.+|+..|
T Consensus 8 iIi~G~qvvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~yehLFevN 87 (132)
T KOG3442|consen 8 IIIMGSQVVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRYEHLFEVN 87 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhcc
Confidence 58999999999999999998876544332111 0011124599999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 73 HPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 73 HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
.+.+|||+|++++|-+|.|.|..+.+
T Consensus 88 dkskGGSFYLQSKVfRAkErld~El~ 113 (132)
T KOG3442|consen 88 DKSKGGSFYLQSKVFRAKERLDEELK 113 (132)
T ss_pred CcccCcceeehHHHHHHHHHHHHHHH
Confidence 99999999999999999999987665
No 6
>PHA03102 Small T antigen; Reviewed
Probab=99.68 E-value=8.7e-17 Score=112.41 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=56.4
Q ss_pred HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCC
Q 034101 43 RREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSN 101 (104)
Q Consensus 43 ~~ea~~iLgl~~~~--~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~ 101 (104)
.+++++||||++++ |.++||++||++++++|||+||+++.|++||+||++|.++.++..
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 57999999999999 999999999999999999999999999999999999999988765
No 7
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.6e-17 Score=125.48 Aligned_cols=63 Identities=24% Similarity=0.394 Sum_probs=56.9
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
....+.++.|+||||+.+++..|||+|||+|++++|||||.+ .+.|++|+.||+||+|+.+|+
T Consensus 10 ~~v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk 76 (336)
T KOG0713|consen 10 EAVLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRK 76 (336)
T ss_pred hhhhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 344556788999999999999999999999999999999874 389999999999999999986
No 8
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.68 E-value=6.6e-17 Score=128.06 Aligned_cols=63 Identities=21% Similarity=0.362 Sum_probs=58.6
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCC
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
...|...++|+||||++++|.+|||++||+|++++|||++++.+.|++|++||++|+++.||+
T Consensus 22 ~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~ 84 (421)
T PTZ00037 22 KREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRK 84 (421)
T ss_pred cccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHH
Confidence 345566899999999999999999999999999999999999999999999999999999884
No 9
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.64 E-value=6.8e-16 Score=90.97 Aligned_cols=53 Identities=26% Similarity=0.395 Sum_probs=49.3
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CHHHHHHHHHHHHHhcccc
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-----SHYLASKINEAKDIMLRRT 97 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-----s~~~~~~i~~Ay~~L~~~~ 97 (104)
++|+||||+++++.++|+++|+++++.+|||+++ ..+.|.+|++||++|.++.
T Consensus 2 ~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999999987 4588999999999999874
No 10
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=3.2e-16 Score=122.35 Aligned_cols=60 Identities=28% Similarity=0.514 Sum_probs=54.8
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|+..++|+||||+++++.+|||++||+|++++|||++. ..+.|++|++||++|+|+.||+
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~ 63 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRK 63 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhh
Confidence 45568999999999999999999999999999999975 3488999999999999999985
No 11
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.61 E-value=1.7e-15 Score=87.73 Aligned_cols=51 Identities=29% Similarity=0.417 Sum_probs=47.3
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHhcc
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----SHYLASKINEAKDIMLR 95 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s~~~~~~i~~Ay~~L~~ 95 (104)
++|++|||+++++.++|+++|+++++.+|||+++ +.+.|.+|++||++|.+
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999999999999987 46889999999999975
No 12
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.59 E-value=3e-15 Score=89.50 Aligned_cols=56 Identities=30% Similarity=0.439 Sum_probs=51.0
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GSH----YLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~-gs~----~~~~~i~~Ay~~L~~~~k~~ 100 (104)
++|+||||+++++.++|+++|+++++.+|||++ ++. +.+..|++||++|.++.+|+
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~ 61 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRR 61 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHH
Confidence 579999999999999999999999999999995 445 78999999999999988764
No 13
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.3e-15 Score=118.80 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=52.5
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||++++|.+|||++||+|+++||||++. + .+.|++|++||++|+++.||+
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~ 63 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHH
Confidence 47899999999999999999999999999999975 2 478999999999999999874
No 14
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.8e-15 Score=118.10 Aligned_cols=60 Identities=32% Similarity=0.396 Sum_probs=54.4
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|+..++|+||||+++++.+|||++||+|++++|||++. ..+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 64 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 45568999999999999999999999999999999975 2489999999999999999874
No 15
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.8e-15 Score=117.79 Aligned_cols=58 Identities=26% Similarity=0.359 Sum_probs=53.6
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..++|+||||+++++.+|||++||+|++++|||+++ + .+.|++|++||++|+|+.||+
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~ 69 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRK 69 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 368999999999999999999999999999999976 3 488999999999999999985
No 16
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2.6e-15 Score=113.78 Aligned_cols=60 Identities=27% Similarity=0.391 Sum_probs=54.1
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|...++|+||||++++|.+|||++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~ 63 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRR 63 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHH
Confidence 445689999999999999999999999999999999863 488999999999999988763
No 17
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=3.6e-15 Score=116.39 Aligned_cols=60 Identities=27% Similarity=0.403 Sum_probs=54.1
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|...++|++|||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~ 63 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA 63 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHH
Confidence 344689999999999999999999999999999999854 478999999999999999875
No 18
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.56 E-value=3.7e-15 Score=116.12 Aligned_cols=60 Identities=25% Similarity=0.356 Sum_probs=54.2
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|...++|+||||+++++.+|||++||+|++++|||++.. .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 65 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRA 65 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHH
Confidence 445689999999999999999999999999999999752 478999999999999999885
No 19
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.55 E-value=5.4e-15 Score=115.66 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=54.4
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|...++|+||||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 63 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA 63 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhh
Confidence 344689999999999999999999999999999999754 588999999999999999875
No 20
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=9.4e-15 Score=114.29 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..++|+||||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~ 64 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRA 64 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhh
Confidence 3589999999999999999999999999999999754 478999999999999999875
No 21
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=5.7e-15 Score=113.99 Aligned_cols=56 Identities=25% Similarity=0.350 Sum_probs=52.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-YLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..|+||||+++++.+|||++||+|+++||||||++. +.|++|.+||++|+|+.||.
T Consensus 5 ~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~ 61 (337)
T KOG0712|consen 5 KLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKRE 61 (337)
T ss_pred ccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence 458999999999999999999999999999998864 99999999999999999874
No 22
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.54 E-value=8.7e-15 Score=114.01 Aligned_cols=57 Identities=23% Similarity=0.457 Sum_probs=52.3
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.+|||++||+|++++|||++++ .+.|++|++||++|+++.+|.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRA 63 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhH
Confidence 578999999999999999999999999999999752 378999999999999998874
No 23
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=9.4e-15 Score=114.17 Aligned_cols=60 Identities=27% Similarity=0.421 Sum_probs=54.2
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|...++|+||||+++++.+|||++||+|++++|||++. ..+.|++|++||++|+++.+|+
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 63 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA 63 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHH
Confidence 34468999999999999999999999999999999975 3589999999999999999874
No 24
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1e-14 Score=113.91 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=54.0
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|+..++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 64 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRA 64 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhh
Confidence 345689999999999999999999999999999999753 368999999999999999875
No 25
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=9.6e-15 Score=113.78 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=53.8
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|...++|+||||+++++.+|||++||+|++++|||+++ + .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhh
Confidence 44568999999999999999999999999999999975 3 378999999999999998874
No 26
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=8.5e-15 Score=114.02 Aligned_cols=60 Identities=27% Similarity=0.416 Sum_probs=54.3
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|...++|+||||+++++.+||+++||+|++++|||++++ .+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~ 64 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRG 64 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHH
Confidence 455789999999999999999999999999999999763 478999999999999998874
No 27
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.53 E-value=1e-14 Score=113.98 Aligned_cols=58 Identities=24% Similarity=0.366 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..++|++|||+++++.+|||++||+|++++|||++. ..+.|++|++||++|+++.+|+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~ 64 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ 64 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHH
Confidence 468899999999999999999999999999999974 4589999999999999999874
No 28
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.5e-14 Score=113.17 Aligned_cols=59 Identities=22% Similarity=0.403 Sum_probs=53.6
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
...++|+||||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 2 ~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 64 (380)
T PRK14297 2 ASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKA 64 (380)
T ss_pred CCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhC
Confidence 34588999999999999999999999999999999752 378999999999999999885
No 29
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1e-14 Score=114.04 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=52.7
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~---~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.+|||++||+|++++|||+++++ +.|++|++||++|+++.+|+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 62 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhh
Confidence 4789999999999999999999999999999998764 67999999999999998875
No 30
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.52 E-value=1.7e-14 Score=113.25 Aligned_cols=57 Identities=26% Similarity=0.392 Sum_probs=52.5
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.+|||++||+|++++|||++. ..+.|++|++||++|+++.+|+
T Consensus 9 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 69 (389)
T PRK14295 9 KDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRK 69 (389)
T ss_pred cCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHH
Confidence 58899999999999999999999999999999975 2488999999999999998774
No 31
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.51 E-value=1.8e-14 Score=112.97 Aligned_cols=57 Identities=32% Similarity=0.413 Sum_probs=52.3
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~ 65 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 65 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 589999999999999999999999999999999752 368999999999999998874
No 32
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.51 E-value=2e-14 Score=109.59 Aligned_cols=60 Identities=22% Similarity=0.353 Sum_probs=54.1
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
|+..++|++|||+++++.+|||++||+|++++|||++. ..+.|++|++||++|+++.+|+
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~ 63 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 63 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHH
Confidence 44568899999999999999999999999999999975 4589999999999999988773
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.50 E-value=2.9e-14 Score=112.17 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=52.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.+|||++||+|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~ 63 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRR 63 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhh
Confidence 478999999999999999999999999999999863 478999999999999998764
No 34
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.49 E-value=4.2e-14 Score=110.69 Aligned_cols=57 Identities=30% Similarity=0.384 Sum_probs=52.6
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.++||++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 3 ~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~ 62 (382)
T PRK14291 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK 62 (382)
T ss_pred CCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHH
Confidence 478999999999999999999999999999999853 588999999999999998874
No 35
>PHA02624 large T antigen; Provisional
Probab=99.49 E-value=6.6e-14 Score=114.98 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=57.0
Q ss_pred HHHHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 034101 43 RREAALILGVREST--PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNS 102 (104)
Q Consensus 43 ~~ea~~iLgl~~~~--~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~~ 102 (104)
.+++|++|||++++ +.++||++||++++++|||+||+++.|++|++||++|.++.++.+.
T Consensus 10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 46899999999999 9999999999999999999999999999999999999999988765
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.47 E-value=6.9e-14 Score=109.19 Aligned_cols=57 Identities=25% Similarity=0.347 Sum_probs=52.3
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||++++|.+||+++||++++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~ 62 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRA 62 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhh
Confidence 578999999999999999999999999999999753 478999999999999998774
No 37
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=8.4e-14 Score=109.32 Aligned_cols=56 Identities=27% Similarity=0.414 Sum_probs=51.5
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
++|+||||+++++.+|||++||+|++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 2 d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~ 61 (391)
T PRK14284 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61 (391)
T ss_pred CHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHH
Confidence 57999999999999999999999999999999763 478999999999999998774
No 38
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.45 E-value=1e-13 Score=107.26 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=51.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
++|+||||+++++.++||++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~ 59 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRA 59 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHH
Confidence 46999999999999999999999999999999853 478999999999999998774
No 39
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.45 E-value=1.1e-13 Score=107.67 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=52.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.+||+++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~ 64 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRR 64 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhh
Confidence 478999999999999999999999999999999753 378999999999999998874
No 40
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.44 E-value=2.9e-13 Score=101.82 Aligned_cols=58 Identities=29% Similarity=0.379 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----C-------HHHHHHHHHHHHHhccc
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----S-------HYLASKINEAKDIMLRR 96 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s-------~~~~~~i~~Ay~~L~~~ 96 (104)
..++..++|++|||++++|.++||++||+|++++|||+.. + .+.+++|++||++|++.
T Consensus 195 ~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 195 RGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999942 2 26899999999999864
No 41
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.1e-13 Score=108.34 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C---HHHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..++|++|||+++++.+||+++||+|++++|||++. + .+.|++|++||++|.++.+|+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 65 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRS 65 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 468999999999999999999999999999999975 2 478999999999999998875
No 42
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.44 E-value=1.8e-13 Score=106.63 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=52.4
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|+++.+|+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~ 61 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRA 61 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhh
Confidence 367999999999999999999999999999999864 478999999999999998874
No 43
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.8e-13 Score=108.81 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=53.9
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101 42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
...-+|++|||..+++..+|+++||+|++++|||++++ .+.|+.|+.||+||++++.|+
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~ 69 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERA 69 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhh
Confidence 34678999999999999999999999999999999875 488999999999999998874
No 44
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.5e-13 Score=100.49 Aligned_cols=57 Identities=25% Similarity=0.410 Sum_probs=52.5
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHhcccccCCC
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDA----GGSHYLASKINEAKDIMLRRTKGSN 101 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk----~gs~~~~~~i~~Ay~~L~~~~k~~~ 101 (104)
+.++||||+++++..|||++||+|.+++|||| +++.+.+..|+.||+.|.|...|.|
T Consensus 100 DPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN 160 (230)
T KOG0721|consen 100 DPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSREN 160 (230)
T ss_pred CcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHH
Confidence 45999999999999999999999999999999 5678899999999999999887754
No 45
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.9e-13 Score=100.93 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=54.2
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
...+.|++|||+++++.++||++||+|++++|||++|+ +.+|.+||.||++|+|+.+|.
T Consensus 29 ~~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~ 91 (279)
T KOG0716|consen 29 IRLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRN 91 (279)
T ss_pred chhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhh
Confidence 35688999999999999999999999999999999775 488999999999999999874
No 46
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=2.9e-13 Score=107.91 Aligned_cols=60 Identities=22% Similarity=0.284 Sum_probs=54.7
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~~k~~ 100 (104)
....|.|.+|||+++++.+||+++||++++.+||||+-|+ +.|++|.+|||+|+|+++|+
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRa 72 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRA 72 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 3446899999999999999999999999999999998754 77999999999999999885
No 47
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.4e-13 Score=103.33 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=55.6
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.+++.+++|+||||+.+++..|||.+|++|++++|||-+. ....|++|.+|||+|.++.||+
T Consensus 38 ~~~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~ 102 (288)
T KOG0715|consen 38 RIISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQ 102 (288)
T ss_pred ccCCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHH
Confidence 4455568999999999999999999999999999999864 4588999999999999999874
No 48
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.40 E-value=3.4e-13 Score=105.32 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=52.3
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.++|+++||+|++++|||++. ..+.|++|++||++|+++.+|+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~ 62 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHH
Confidence 47899999999999999999999999999999975 3588999999999999998874
No 49
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=7.9e-13 Score=100.82 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH---YLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s~---~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..|+|.||||+++++..+|+++||..++++|||+|+ +| +.|+.|.+||++|.++..|+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~ 65 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRA 65 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHH
Confidence 468999999999999999999999999999999986 33 88999999999999998774
No 50
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.33 E-value=1.8e-12 Score=110.48 Aligned_cols=60 Identities=22% Similarity=0.139 Sum_probs=54.5
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
+...++|+||||+++++..+||++||+|++++|||++.+ ...|++|++||++|+++.+|+
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk 632 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKK 632 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHH
Confidence 345689999999999999999999999999999999763 478999999999999999885
No 51
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=4.3e-12 Score=88.79 Aligned_cols=58 Identities=28% Similarity=0.346 Sum_probs=52.8
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CH----HHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SH----YLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s~----~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..+.|+||||+++++..||+++||++++++|||+++ ++ +.|+.|++||++|.++.++.
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 467899999999999999999999999999999976 33 88999999999999988774
No 52
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.26 E-value=1.1e-11 Score=88.05 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=48.7
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
++|++|||+++ .+..+|+++|+++++++|||+..+ .+.+..||+||++|+++.+|+
T Consensus 2 ~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra 68 (171)
T PRK05014 2 DYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRA 68 (171)
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHH
Confidence 57999999996 788999999999999999999532 246788999999999998875
No 53
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.24 E-value=1.2e-11 Score=87.40 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=48.9
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~~k~~ 100 (104)
++|++|||+++ ++..+|+++|+++.+++|||+..+. +.+..||+||++|+++.+|+
T Consensus 3 ~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra 67 (166)
T PRK01356 3 NYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRA 67 (166)
T ss_pred CHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57999999997 7899999999999999999997543 23579999999999998875
No 54
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.23 E-value=1.1e-11 Score=103.71 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=51.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH---YLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~---~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.++||++||+|++++|||++++. ..|++|++||++|+++.+|+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa 61 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA 61 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHH
Confidence 4689999999999999999999999999999997643 57899999999999998875
No 55
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.8e-12 Score=92.04 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=51.8
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG------SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g------s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
+.|+||||..+++..+|+++|++|++++|||++. ..+.|+.|+.+|.+|.|+++|+
T Consensus 15 d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~ 76 (264)
T KOG0719|consen 15 DLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRA 76 (264)
T ss_pred CHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7799999999999999999999999999999973 4588999999999999998874
No 56
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.21 E-value=2.6e-11 Score=86.33 Aligned_cols=59 Identities=14% Similarity=0.138 Sum_probs=50.7
Q ss_pred CHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 034101 42 TRREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
....++++|||++. .+..+|+++||++.+++|||+..+ .+.+..||+||++|+++.+|+
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra 71 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRA 71 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhH
Confidence 34567999999998 688999999999999999999532 245789999999999998875
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.20 E-value=3.5e-11 Score=85.82 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC--H-------HHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGS--H-------YLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs--~-------~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++ .+..+|+++|+++.+++|||+..+ . +.+..||.||++|+++.+|+
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra 73 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRA 73 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHH
Confidence 588999999996 689999999999999999999542 1 33578999999999998875
No 58
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=5.4e-11 Score=89.40 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=53.2
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..+++|++|||..+++..||.++||.|+++||||++.+ ..+|..|..||++|+++..++
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt 92 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRT 92 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHH
Confidence 35789999999999999999999999999999999753 478999999999999987765
No 59
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=6.8e-10 Score=95.90 Aligned_cols=73 Identities=16% Similarity=0.249 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHhCCCCCCC-HHHH
Q 034101 9 AGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES----TPTEKVKEAHRRVMVANHPDAGGS-HYLA 83 (104)
Q Consensus 9 ~~ra~~~A~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~----~~~~eik~ayr~l~~~~HPDk~gs-~~~~ 83 (104)
+.|..+.+|+.....+ +..|+.++|++||.|+-+ .+.+.||++|++|+.+||||||+. -++|
T Consensus 1259 fL~~~L~~W~~ElekK-------------P~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemF 1325 (2235)
T KOG1789|consen 1259 FLRCCLATWYNELEKK-------------PATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMF 1325 (2235)
T ss_pred HHHHHHHHHHHHHhcC-------------CCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 4567778888777665 678999999999999965 466999999999999999999975 4899
Q ss_pred HHHHHHHHHhc
Q 034101 84 SKINEAKDIML 94 (104)
Q Consensus 84 ~~i~~Ay~~L~ 94 (104)
-+||.|||+|.
T Consensus 1326 e~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1326 ERVNKAYELLS 1336 (2235)
T ss_pred HHHHHHHHHHH
Confidence 99999999998
No 60
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.7e-10 Score=91.92 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=52.6
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|.+|||++++|.++||+.||+++...|||||-. .|.|+.|..||++|.+..+|.
T Consensus 235 ~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~ 294 (490)
T KOG0720|consen 235 LDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRK 294 (490)
T ss_pred CCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhh
Confidence 479999999999999999999999999999999864 488999999999999988874
No 61
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.98 E-value=6.1e-10 Score=87.29 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=53.6
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHH-------HHHHHHHHHHHhcccccCCC
Q 034101 42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHY-------LASKINEAKDIMLRRTKGSN 101 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~~-------~~~~i~~Ay~~L~~~~k~~~ 101 (104)
...++|+||||..++++.||-++||+++.+||||.-.+.+ .|.-|..|.+||.++++|+.
T Consensus 392 ~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrq 458 (504)
T KOG0624|consen 392 GKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQ 458 (504)
T ss_pred ccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhh
Confidence 3468999999999999999999999999999999976653 57789999999999999873
No 62
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.91 E-value=1.9e-09 Score=76.75 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=49.0
Q ss_pred HHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG--S-------HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~g--s-------~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
+++++|||++. .+...++++|+.+.+++|||+.. + .+....||+||.+|+++.+|+
T Consensus 3 nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA 69 (173)
T PRK01773 3 NPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRA 69 (173)
T ss_pred ChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHH
Confidence 57899999997 89999999999999999999942 2 245688999999999998875
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=3.4e-09 Score=84.11 Aligned_cols=60 Identities=25% Similarity=0.392 Sum_probs=53.7
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-C----HHHHHHHHHHHHHhcccccCCCC
Q 034101 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-S----HYLASKINEAKDIMLRRTKGSNS 102 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s----~~~~~~i~~Ay~~L~~~~k~~~~ 102 (104)
+.+||.|||+..+++..||+++||++++.||||++. + .-+|+++-+||.+|.++.++.+.
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 468999999999999999999999999999999964 4 35699999999999999988653
No 64
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.79 E-value=9.8e-09 Score=82.34 Aligned_cols=62 Identities=26% Similarity=0.448 Sum_probs=53.2
Q ss_pred hcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCCC
Q 034101 33 YEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGSN 101 (104)
Q Consensus 33 ~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~~ 101 (104)
+..++++ |+||||+.+++..+||++||+|..++||||-.. .+...+|+.||+.|.+...|.|
T Consensus 94 ~~~~fDP-------yEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~ren 164 (610)
T COG5407 94 YRRGFDP-------YEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRREN 164 (610)
T ss_pred HHcCCCh-------HHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4455666 999999999999999999999999999999542 3668899999999999887754
No 65
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=6e-09 Score=76.13 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=50.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-----HHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-----YLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-----~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|.||||..+++.++|+++|+++++++|||++.+. ..++++.+||++|.++.++.
T Consensus 3 ~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~ 64 (306)
T KOG0714|consen 3 KDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRK 64 (306)
T ss_pred ccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhh
Confidence 4789999999999888999999999999999996544 35788899999999988875
No 66
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.75 E-value=1.5e-08 Score=71.08 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC--C-------HHHHHHHHHHHHHhcccccCC
Q 034101 56 TPTEKVKEAHRRVMVANHPDAGG--S-------HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 56 ~~~~eik~ayr~l~~~~HPDk~g--s-------~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.+..+|+++|+++.+++|||+.. + .+.++.||+||++|+++.+|+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra 56 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRA 56 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhH
Confidence 57899999999999999999842 1 256789999999999999875
No 67
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.6e-08 Score=73.85 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=46.8
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-H----HHHHHHHHHHHhcccc
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-Y----LASKINEAKDIMLRRT 97 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-~----~~~~i~~Ay~~L~~~~ 97 (104)
.+|++|+|+|+++.++|++.||+|.+..|||+|.+. + .|--|..||..|.++.
T Consensus 54 NpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~ 111 (250)
T KOG1150|consen 54 NPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDK 111 (250)
T ss_pred ChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHH
Confidence 569999999999999999999999999999999865 3 3556889999998776
No 68
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.1e-07 Score=71.15 Aligned_cols=52 Identities=31% Similarity=0.409 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHH-Hhc
Q 034101 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKD-IML 94 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~-~L~ 94 (104)
..|++.||||.++++.++++.+|.+|++++|||.|. |.+.|.+|.+||. +|.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq 101 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQ 101 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999975 6799999999999 554
No 69
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=2.2e-05 Score=60.04 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=49.7
Q ss_pred HHHHHHhCCCCC---CCHHHHHHHHHHHHHHhCCCCC------CCHHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRES---TPTEKVKEAHRRVMVANHPDAG------GSHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~---~~~~eik~ayr~l~~~~HPDk~------gs~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.+.|.+|||+.- ++..+|.+++++.+.+||||+. |..+.|.-|..||++|.+..+|.
T Consensus 43 ~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~ 108 (379)
T COG5269 43 VDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRL 108 (379)
T ss_pred hhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHh
Confidence 567999999963 7889999999999999999983 35688999999999999988764
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00013 Score=51.75 Aligned_cols=50 Identities=28% Similarity=0.441 Sum_probs=42.1
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC---CCCH--------HHHHHHHHHHHHh
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDA---GGSH--------YLASKINEAKDIM 93 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk---~gs~--------~~~~~i~~Ay~~L 93 (104)
.+++.+||+....+..+|+++|+.++..+|||+ .|++ +.++++++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999999999999998 3332 4566677777654
No 71
>PF13446 RPT: A repeated domain in UCH-protein
Probab=97.37 E-value=0.0012 Score=39.05 Aligned_cols=48 Identities=23% Similarity=0.256 Sum_probs=38.2
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcc
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLR 95 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~ 95 (104)
|+.++||++||++++.+.+.|-.+|+.... .+|.....+.+|..+|-+
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-------~~P~~~~~~r~AL~~Ia~ 49 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN-------DDPSQKDTLREALRVIAE 49 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH-------cChHhHHHHHHHHHHHHH
Confidence 889999999999999999999999999988 333455555666665543
No 72
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0027 Score=44.88 Aligned_cols=58 Identities=22% Similarity=0.253 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCC-------C--HHHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGG-------S--HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~g-------s--~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
....+.+||.... .+++.+...|-...++.|||+-+ + .+...+||+||.+|.++.+|+
T Consensus 7 ~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA 75 (168)
T KOG3192|consen 7 PSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARA 75 (168)
T ss_pred HHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 4577899988765 67788888999999999999832 2 266789999999999998875
No 73
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.22 E-value=0.0059 Score=49.39 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 034101 55 STPTEKVKEAHRRVMVANHPDA 76 (104)
Q Consensus 55 ~~~~~eik~ayr~l~~~~HPDk 76 (104)
-++..+||++|||-++..||||
T Consensus 399 LVtp~~VKKaYrKA~L~VHPDK 420 (453)
T KOG0431|consen 399 LVTPAQVKKAYRKAVLCVHPDK 420 (453)
T ss_pred ccCHHHHHHHHHhhhheeCccc
Confidence 3789999999999999999999
No 74
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=95.06 E-value=0.07 Score=38.71 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccc
Q 034101 53 RESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRR 96 (104)
Q Consensus 53 ~~~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~ 96 (104)
++++|.+||.+++.++..+| +||.....+|..|||.|.-.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999999998 58888999999999987644
No 75
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.022 Score=40.26 Aligned_cols=44 Identities=20% Similarity=0.191 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCH---------HHHHHHHHHHHHhcccccC
Q 034101 56 TPTEKVKEAHRRVMVANHPDAGGSH---------YLASKINEAKDIMLRRTKG 99 (104)
Q Consensus 56 ~~~~eik~ayr~l~~~~HPDk~gs~---------~~~~~i~~Ay~~L~~~~k~ 99 (104)
.+.+.++..|+.+...+|||+.++. +.+..+|.||.+|+++.++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~r 67 (174)
T COG1076 15 IDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLR 67 (174)
T ss_pred HHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3667788999999999999996532 3567799999999988765
No 76
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=86.75 E-value=0.98 Score=30.02 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCCH--------HHHHHHHHHHHHhccc
Q 034101 55 STPTEKVKEAHRRVMVANHPDAGGSH--------YLASKINEAKDIMLRR 96 (104)
Q Consensus 55 ~~~~~eik~ayr~l~~~~HPDk~gs~--------~~~~~i~~Ay~~L~~~ 96 (104)
..+..+++.+-|....+.|||--++. +-++.|+.=-+.|...
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~ 54 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR 54 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence 35678999999999999999975432 2234455545555443
No 77
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=66.07 E-value=9.9 Score=29.09 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCC--------CCHHHHHHHHHHHHHhccccc
Q 034101 56 TPTEKVKEAHRRVMVANHPDAG--------GSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 56 ~~~~eik~ayr~l~~~~HPDk~--------gs~~~~~~i~~Ay~~L~~~~k 98 (104)
++..+++..|+.....+||++- ...+.+..|..||+++.+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~ 54 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEP 54 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhcccc
Confidence 4667899999999999999974 234668999999999998544
No 78
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=64.91 E-value=32 Score=21.59 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=22.4
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhC
Q 034101 47 ALILGVRESTPTEKVKEAHRRVMVANH 73 (104)
Q Consensus 47 ~~iLgl~~~~~~~eik~ayr~l~~~~H 73 (104)
-+++|+++.++..||+.+-+..+.+..
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfVRKlS 32 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFVRKLS 32 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHhc
Confidence 468999999999999999877776653
No 79
>PF11300 DUF3102: Protein of unknown function (DUF3102); InterPro: IPR021451 This entry is represented by Streptococcus phage 7201, Orf2. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=58.63 E-value=18 Score=24.66 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=13.4
Q ss_pred CCCCHHHHHHHhCCCCC
Q 034101 39 PVMTRREAALILGVRES 55 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~ 55 (104)
..++..+|..+|||+.+
T Consensus 88 ~~L~~tqal~Ll~lpee 104 (130)
T PF11300_consen 88 PNLSYTQALILLGLPEE 104 (130)
T ss_pred HhhhHHHHHHHHcCCch
Confidence 44567899999999775
No 80
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=55.52 E-value=23 Score=27.53 Aligned_cols=38 Identities=26% Similarity=0.294 Sum_probs=29.6
Q ss_pred CCCHHHHHHHh-----CCCC-CCCHHHHHHHHHHHHHHhCCCCC
Q 034101 40 VMTRREAALIL-----GVRE-STPTEKVKEAHRRVMVANHPDAG 77 (104)
Q Consensus 40 ~m~~~ea~~iL-----gl~~-~~~~~eik~ayr~l~~~~HPDk~ 77 (104)
.-..++|.++| |-.+ +.+.+++-++.+..-...|||-|
T Consensus 26 ~~~l~~a~~ll~~~~~g~~~~~~~~~~lw~Ak~l~~Sa~HPDTg 69 (308)
T PF03820_consen 26 EAELEEAKELLEDYRAGKVPPGLTDDELWKAKKLYDSAFHPDTG 69 (308)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhcccCCCCC
Confidence 33467888888 3332 35899999999999999999974
No 81
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=53.97 E-value=21 Score=28.08 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=29.7
Q ss_pred CHHHHHHHhC------CCCCCCHHHHHHHHHHHHHHhCCCCC
Q 034101 42 TRREAALILG------VRESTPTEKVKEAHRRVMVANHPDAG 77 (104)
Q Consensus 42 ~~~ea~~iLg------l~~~~~~~eik~ayr~l~~~~HPDk~ 77 (104)
..+++++|+. ++++.+.+++=+|.+..-..+|||-|
T Consensus 46 ~le~ar~iv~~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDTg 87 (328)
T KOG3767|consen 46 KLEEARQIVEDYKAGKVPPGLTDDELWKAKKLYDSTFHPDTG 87 (328)
T ss_pred HHHHHHHHHHhhccCCcCCCCcHHHHHHHHHHHhcccCCCCC
Confidence 4578888884 44557899999999999999999985
No 82
>PF13543 KSR1-SAM: SAM like domain present in kinase suppressor RAS 1
Probab=52.68 E-value=71 Score=21.78 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=32.9
Q ss_pred CCCCCCHHHHHHHhCCCCC---------CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Q 034101 37 FQPVMTRREAALILGVRES---------TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIM 93 (104)
Q Consensus 37 ~~~~m~~~ea~~iLgl~~~---------~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L 93 (104)
..+-+...+|..+.||.+. .+.+.+...-..-++..--+.|.+.+...++..|...|
T Consensus 63 l~~yP~l~~WL~vVgl~~~~i~~i~~~~~tLe~Llemsd~el~~~l~~~g~~~EE~rRL~~Al~~L 128 (129)
T PF13543_consen 63 LNSYPSLRQWLRVVGLRPESIQAILSKVLTLEALLEMSDEELKEILNRCGAREEECRRLCRALSNL 128 (129)
T ss_pred cccCCcHHHHhhhcCCCHHHHHHHHHhhcCHHHHHhCCHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3445788999999999885 12222222211111111111356778888888887765
No 83
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.59 E-value=22 Score=30.23 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=32.1
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccc
Q 034101 49 ILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRR 96 (104)
Q Consensus 49 iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~ 96 (104)
.|-.+..+.+++|+.++..+.+.|||.+ +...+-+|++.|..-
T Consensus 394 ~~~~Ps~~~mEqvk~k~~~m~r~YSP~k-----kl~~Llk~ckLly~~ 436 (651)
T KOG2320|consen 394 FLSTPSDVLMEQVKQKFTAMQRRYSPSK-----KLHALLKACKLLYAG 436 (651)
T ss_pred eccCCcHHHHHHHHHHHHHHHHhhChHH-----HHHHHHHHHHHHHHH
Confidence 4455566789999999999999999987 555556666665543
No 84
>PF12728 HTH_17: Helix-turn-helix domain
Probab=47.86 E-value=15 Score=19.98 Aligned_cols=15 Identities=47% Similarity=0.678 Sum_probs=12.9
Q ss_pred CCHHHHHHHhCCCCC
Q 034101 41 MTRREAALILGVRES 55 (104)
Q Consensus 41 m~~~ea~~iLgl~~~ 55 (104)
||.+|+.++||++..
T Consensus 2 lt~~e~a~~l~is~~ 16 (51)
T PF12728_consen 2 LTVKEAAELLGISRS 16 (51)
T ss_pred CCHHHHHHHHCcCHH
Confidence 688999999999763
No 85
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=45.55 E-value=14 Score=19.25 Aligned_cols=14 Identities=50% Similarity=0.563 Sum_probs=12.5
Q ss_pred CCHHHHHHHhCCCC
Q 034101 41 MTRREAALILGVRE 54 (104)
Q Consensus 41 m~~~ea~~iLgl~~ 54 (104)
|+.+|+.+.||+++
T Consensus 2 lt~~e~a~~lgis~ 15 (49)
T TIGR01764 2 LTVEEAAEYLGVSK 15 (49)
T ss_pred CCHHHHHHHHCCCH
Confidence 68899999999976
No 86
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=44.13 E-value=62 Score=25.02 Aligned_cols=37 Identities=14% Similarity=0.124 Sum_probs=33.1
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Q 034101 37 FQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANH 73 (104)
Q Consensus 37 ~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~H 73 (104)
.+...|.+|.-.+.|++...+..||...|.-|+...|
T Consensus 21 ~~~~lt~~e~~~~~~ln~~~~l~eV~~iylpL~~l~~ 57 (283)
T COG1072 21 TPLTLTEEELKRLRGLNEPISLDEVEDIYLPLSRLLQ 57 (283)
T ss_pred CccccCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHH
Confidence 3667789999999999999999999999999988765
No 87
>PHA01083 hypothetical protein
Probab=42.09 E-value=96 Score=21.76 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=32.2
Q ss_pred hcCCCCCCCCHHHH---HHHhCCCCC----------CCHHHHHHHHHHHHHHhC
Q 034101 33 YEGGFQPVMTRREA---ALILGVRES----------TPTEKVKEAHRRVMVANH 73 (104)
Q Consensus 33 ~~~~~~~~m~~~ea---~~iLgl~~~----------~~~~eik~ayr~l~~~~H 73 (104)
++.|.+..++.+++ -+++|+++. ....++++.|..+.++..
T Consensus 36 ~R~G~r~~i~de~A~~LAe~aGiDp~eall~i~aDraetp~~kalWesIaKKln 89 (149)
T PHA01083 36 MRTGVRTYISDEEAIFLAESAGIDPEIALLGCHADRNENPRAKAIWESIAKKQN 89 (149)
T ss_pred HHcCCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 65666778888777 577888874 577888999999999885
No 88
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=40.50 E-value=53 Score=19.26 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 63 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 63 ~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
+.++..+...||+. +..+..+.|.+.|..|.+..|
T Consensus 14 ~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK 48 (72)
T cd01388 14 KRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEK 48 (72)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 45566677778875 556777778888888876654
No 89
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=39.34 E-value=11 Score=22.11 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=19.2
Q ss_pred HHHHHHhCCCCCCCHHHH-HHHHHHHHHHhCCCC
Q 034101 44 REAALILGVRESTPTEKV-KEAHRRVMVANHPDA 76 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~ei-k~ayr~l~~~~HPDk 76 (104)
++.+++||+++ +++ ...........|||=
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD 35 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDD 35 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTT
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHH
Confidence 46788999966 555 555666777889874
No 90
>PF14893 PNMA: PNMA
Probab=38.22 E-value=24 Score=27.68 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHH
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRR 67 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~ 67 (104)
..++.+.+.-|+||+++|+.+||.++-+.
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHH
Confidence 34567788999999999999999886444
No 91
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=38.20 E-value=23 Score=27.11 Aligned_cols=16 Identities=38% Similarity=0.416 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhccc
Q 034101 81 YLASKINEAKDIMLRR 96 (104)
Q Consensus 81 ~~~~~i~~Ay~~L~~~ 96 (104)
.++++||+|+|+|+..
T Consensus 128 RRLkKVNEAFE~LKRr 143 (284)
T KOG3960|consen 128 RRLKKVNEAFETLKRR 143 (284)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4688999999999843
No 92
>PRK05439 pantothenate kinase; Provisional
Probab=38.18 E-value=1.2e+02 Score=23.56 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=31.6
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 034101 36 GFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVAN 72 (104)
Q Consensus 36 ~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~ 72 (104)
....++|.+|--.+-|+....+.+||...|.=|++..
T Consensus 24 ~~~~~l~~~~~~~l~~~~~~~~~~~v~~iy~plarli 60 (311)
T PRK05439 24 STPLTLTEEELERLRGLNDPISLEEVAEIYLPLSRLL 60 (311)
T ss_pred cCCCCCCHHHHHHhhcCCCCCCHHHHHHHHHHHHHHH
Confidence 3467889999999999999999999999997666544
No 93
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=38.16 E-value=39 Score=19.40 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRRVM 69 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~ 69 (104)
+...+..|--+.|||++.+=.+.|+++-++++
T Consensus 21 PR~~tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 21 PRRITLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CCcCCHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34567899999999999988888999988875
No 94
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=38.08 E-value=57 Score=20.50 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=24.1
Q ss_pred hCCCCCC-CHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 034101 50 LGVREST-PTEKVKEAHRRVMVANHPDAGGSHYLASKINEAK 90 (104)
Q Consensus 50 Lgl~~~~-~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay 90 (104)
-|++|+. .-.++-+.|..++..++| ++++.+..|.+.|
T Consensus 50 ~g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y 88 (118)
T PF07739_consen 50 EGVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY 88 (118)
T ss_dssp HT--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT
T ss_pred cCCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH
Confidence 3667763 667778888888887765 6777777777766
No 95
>smart00427 H2B Histone H2B.
Probab=36.78 E-value=49 Score=21.17 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=12.2
Q ss_pred HHHHHHHhCCCCCCCH
Q 034101 65 HRRVMVANHPDAGGSH 80 (104)
Q Consensus 65 yr~l~~~~HPDk~gs~ 80 (104)
..+..++.|||.+-+.
T Consensus 7 i~kvLKqVhpd~giS~ 22 (89)
T smart00427 7 IYKVLKQVHPDTGISS 22 (89)
T ss_pred HHHHHHHhCCCccccH
Confidence 3577899999997554
No 96
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=36.16 E-value=55 Score=19.77 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=15.8
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHH
Q 034101 40 VMTRREAALILGVRESTPTEKVKE 63 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~~~~eik~ 63 (104)
.+|.+|-+++|||+.+.+.++-.+
T Consensus 45 gks~eeir~~fgi~~d~t~eee~~ 68 (78)
T PF01466_consen 45 GKSPEEIRKYFGIENDLTPEEEEE 68 (78)
T ss_dssp TS-HHHHHHHHT---TSSHHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHHH
Confidence 468899999999999987766544
No 97
>PRK09649 RNA polymerase sigma factor SigC; Reviewed
Probab=35.27 E-value=40 Score=23.23 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=19.4
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPD 75 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPD 75 (104)
..|+.+|--++||++++.-...+.++-++|-.-..||
T Consensus 145 ~g~s~~EIA~~lgis~~tVk~~l~Rar~~Lr~~~~~~ 181 (185)
T PRK09649 145 LGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPD 181 (185)
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCcc
Confidence 4455566666666665544444444544444433333
No 98
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=34.64 E-value=1.3e+02 Score=19.65 Aligned_cols=56 Identities=11% Similarity=0.019 Sum_probs=38.8
Q ss_pred CCCHHHHHHHhCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCH-HH---H-HHHHHHHHHhcc
Q 034101 40 VMTRREAALILGVRES-----TPTEKVKEAHRRVMVANHPDAGGSH-YL---A-SKINEAKDIMLR 95 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~-----~~~~eik~ayr~l~~~~HPDk~gs~-~~---~-~~i~~Ay~~L~~ 95 (104)
--+.+|..+.|||+-+ +..=-|-++|.......++..+.+. +. . .-+.+||+....
T Consensus 11 L~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~~~~~e~~~~~~~R~~L~~AY~dFv~ 76 (105)
T PF03206_consen 11 LSSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFAPGLSEEEDWAAYRRALERAYQDFVT 76 (105)
T ss_pred ccCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3467899999999977 4667778888888888877543333 22 2 236788887654
No 99
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=33.96 E-value=49 Score=23.28 Aligned_cols=12 Identities=17% Similarity=-0.105 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHH
Q 034101 81 YLASKINEAKDI 92 (104)
Q Consensus 81 ~~~~~i~~Ay~~ 92 (104)
+.+..+|.+|+.
T Consensus 99 ~~l~~lN~~Y~~ 110 (166)
T PRK13798 99 AALAAGNRAYEE 110 (166)
T ss_pred HHHHHHHHHHHH
Confidence 567778888873
No 100
>PRK00810 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=32.02 E-value=1.6e+02 Score=19.66 Aligned_cols=55 Identities=9% Similarity=0.026 Sum_probs=31.0
Q ss_pred CCCHHHHHHHhCCCCC-----CCHHHHHHHHHHHHHHhCCCCCCCHHH---H-HHHHHHHHHhc
Q 034101 40 VMTRREAALILGVRES-----TPTEKVKEAHRRVMVANHPDAGGSHYL---A-SKINEAKDIML 94 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~-----~~~~eik~ayr~l~~~~HPDk~gs~~~---~-~~i~~Ay~~L~ 94 (104)
--+.||..+.|||+-+ ...=.|-++|......-......+.+. . .-+.+||+...
T Consensus 15 LssAEdff~ff~V~YDp~vvnV~RLHILKrF~~yL~~~~~~~~~e~~~~~~yr~aL~~AY~dF~ 78 (113)
T PRK00810 15 LSSAEEFFQLLGVPYDPKVVNVARLHILKRMGQYLAQEDFAGLPEAEARARCRAVLERAYADFV 78 (113)
T ss_pred cccHHHHHHHhCCCCCHHHHHHhHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 3456889999999876 355556666666655443221122221 1 23567776543
No 101
>PRK12547 RNA polymerase sigma factor; Provisional
Probab=31.84 E-value=56 Score=21.89 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=5.5
Q ss_pred CHHHHHHHhCCCCC
Q 034101 42 TRREAALILGVRES 55 (104)
Q Consensus 42 ~~~ea~~iLgl~~~ 55 (104)
+..|--++||++++
T Consensus 130 s~~eIA~~lgis~~ 143 (164)
T PRK12547 130 SYEDAAAICGCAVG 143 (164)
T ss_pred CHHHHHHHhCCCHH
Confidence 33333444444333
No 102
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=31.58 E-value=66 Score=23.62 Aligned_cols=70 Identities=14% Similarity=0.262 Sum_probs=37.5
Q ss_pred HHHHHHHhCCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHh
Q 034101 15 RAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG-SHYLASKINEAKDIM 93 (104)
Q Consensus 15 ~A~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g-s~~~~~~i~~Ay~~L 93 (104)
.-|++|..+-+++. |-+.+.+ +...+|||+...+.+ |++|-.|..+.-=++-. .-.....+..||..|
T Consensus 17 ~Ew~RY~~LmqG~r------G~~SPgL---dPLtaLGIeArsd~E--RrryAEl~vk~E~~rvekeLA~qrayd~A~~RL 85 (200)
T TIGR03759 17 DEWQRYQQLMQGPR------GVYSPGL---DPLTALGIEARSDEE--RRRYAELWVKQEAQRVEKELAFQRAYDAAWQRL 85 (200)
T ss_pred HHHHHHHHHhcCCc------cCcCCCC---ChhhhhccccCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677776554432 2223333 448899999876555 66776665543211100 112234466777777
Q ss_pred cc
Q 034101 94 LR 95 (104)
Q Consensus 94 ~~ 95 (104)
--
T Consensus 86 ~p 87 (200)
T TIGR03759 86 YP 87 (200)
T ss_pred CC
Confidence 53
No 103
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.45 E-value=62 Score=22.07 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHhc
Q 034101 56 TPTEKVKEAHRRVMVANH-PDAGGSHYLASKINEAKDIML 94 (104)
Q Consensus 56 ~~~~eik~ayr~l~~~~H-PDk~gs~~~~~~i~~Ay~~L~ 94 (104)
.-..+++++|+.+....| |++.. ..++-..||=...
T Consensus 48 ~aDa~LN~AY~~ll~~l~~~~~~~---aL~kaQRAWi~fR 84 (127)
T COG3755 48 AADAELNKAYKALLKRLQDSPRTK---ALQKAQRAWIAFR 84 (127)
T ss_pred HHHHHHHHHHHHHHHHhccChHHH---HHHHHHHHHHHHh
Confidence 345789999999999888 66533 4666666665443
No 104
>PF05344 DUF746: Domain of Unknown Function (DUF746); InterPro: IPR008008 This is a short conserved region found in some transposons.
Probab=31.22 E-value=93 Score=18.80 Aligned_cols=38 Identities=18% Similarity=0.201 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDA 76 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk 76 (104)
..+++..+|-+.||+++.+-. +--..||+-+.+..|..
T Consensus 11 s~~~s~~~Aa~~lG~~~~~v~-~wv~~fR~wll~LDPSG 48 (65)
T PF05344_consen 11 SQQISVAQAADRLGTDPGTVR-RWVRMFRQWLLQLDPSG 48 (65)
T ss_pred cccccHHHHHHHHCcCHHHHH-HHHHHHHHHHHHcCCCC
Confidence 567899999999999886433 33467999999987753
No 105
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=31.07 E-value=34 Score=17.57 Aligned_cols=14 Identities=50% Similarity=0.703 Sum_probs=11.8
Q ss_pred CCHHHHHHHhCCCC
Q 034101 41 MTRREAALILGVRE 54 (104)
Q Consensus 41 m~~~ea~~iLgl~~ 54 (104)
|+..|+.+.||+++
T Consensus 1 ~s~~e~a~~lgvs~ 14 (49)
T cd04762 1 LTTKEAAELLGVSP 14 (49)
T ss_pred CCHHHHHHHHCcCH
Confidence 57789999999976
No 106
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=30.70 E-value=49 Score=13.65 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=6.8
Q ss_pred HHHHHHHHHHh
Q 034101 83 ASKINEAKDIM 93 (104)
Q Consensus 83 ~~~i~~Ay~~L 93 (104)
+..|..||+.|
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 45566677665
No 107
>PF11126 Phage_DsbA: Transcriptional regulator DsbA; InterPro: IPR020313 DsbA is a double stranded binding protein found in bacteriophage T4 which is involved in transcriptional regulation. DsbA, along with other viral proteins, interacts with the host RNA polymerase core enzyme enabling initiation of transcription. DsbA acts as an enhancer protein of late genes in vitro. The protein consists of mainly alpha helices [].
Probab=29.87 E-value=86 Score=19.19 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=29.3
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHHhc
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-YLASKINEAKDIML 94 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-~~~~~i~~Ay~~L~ 94 (104)
-|-.=|||++ +-|.+++..||.+--..+ ..-.++.+.|+.+-
T Consensus 25 ~AK~ElGv~g--------k~Fnkl~~lyHk~~Re~fE~e~ee~~elYD~~F 67 (69)
T PF11126_consen 25 RAKDELGVDG--------KMFNKLLKLYHKQEREEFEAENEEVVELYDAVF 67 (69)
T ss_pred HHHHHcCCCH--------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHc
Confidence 4556788887 889999999996542222 33456778888764
No 108
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=29.70 E-value=1.2e+02 Score=19.66 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=29.0
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCC---------CCCHHH
Q 034101 47 ALILGVRESTPTEKVKEAHRRVMVANHPDA---------GGSHYL 82 (104)
Q Consensus 47 ~~iLgl~~~~~~~eik~ayr~l~~~~HPDk---------~gs~~~ 82 (104)
...+++.++.+.+++++++++.....+++. ||++..
T Consensus 30 i~~i~~~~~~~~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~n 74 (116)
T TIGR00824 30 VGAVPFVPGENAETLQEKYNAALADLDTEEEVLFLVDIFGGSPYN 74 (116)
T ss_pred eEEEEcCCCcCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHH
Confidence 456778888999999999999999987654 678754
No 109
>PRK12529 RNA polymerase sigma factor; Provisional
Probab=29.60 E-value=65 Score=22.00 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=14.0
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 034101 40 VMTRREAALILGVRESTPTEKVKEAHRRV 68 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~~~~eik~ayr~l 68 (104)
.++.+|.-++||++.+.-...+.++.+++
T Consensus 143 g~s~~EIA~~lgis~~tVk~~l~rAl~~~ 171 (178)
T PRK12529 143 GMKQKDIAQALDIALPTVKKYIHQAYVTC 171 (178)
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34445555555555544444444444444
No 110
>PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A ....
Probab=28.76 E-value=1.3e+02 Score=17.53 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=20.5
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q 034101 42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPD 75 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPD 75 (104)
+...|.+.||-.+..+.+++-+.-.+ -.+.||+
T Consensus 28 d~~kA~~~LgW~p~~~L~~~i~~~w~-W~~~np~ 60 (62)
T PF13950_consen 28 DISKAREELGWKPKYSLEDMIRDAWN-WQKKNPN 60 (62)
T ss_dssp --HHHHHHC----SSSHHHHHHHHHH-HHHHSTT
T ss_pred CHHHHHHHhCCCcCCCHHHHHHHHHH-HHHHCcC
Confidence 45789999999999888887766655 4456675
No 111
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=28.59 E-value=41 Score=16.56 Aligned_cols=17 Identities=35% Similarity=0.655 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHHHhCCC
Q 034101 59 EKVKEAHRRVMVANHPD 75 (104)
Q Consensus 59 ~eik~ayr~l~~~~HPD 75 (104)
+++-..++++.-..|||
T Consensus 26 ~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 26 EEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHH----------
T ss_pred HHHHHHHHHHhcccccC
Confidence 56667777777888886
No 112
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=28.30 E-value=1.3e+02 Score=23.00 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=30.8
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhC
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANH 73 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~H 73 (104)
+.++|.+|-..+=|+....|.+||..-|.=|+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~v~~iy~pl~~~~~ 37 (290)
T TIGR00554 2 PMTLSEDEIKRLKGINEDLSLEEVATIYLPLSRLLN 37 (290)
T ss_pred CCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHH
Confidence 456888999999999999999999999988776543
No 113
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=27.72 E-value=40 Score=17.71 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=19.1
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDA 76 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk 76 (104)
|+..|+.++|||++ ..|+ .|.+..... |.+
T Consensus 1 ~~~~e~a~~~gv~~----~tlr-~~~~~g~l~-~~~ 30 (49)
T cd04761 1 YTIGELAKLTGVSP----STLR-YYERIGLLS-PAR 30 (49)
T ss_pred CcHHHHHHHHCcCH----HHHH-HHHHCCCCC-CCc
Confidence 57789999999976 4554 444444333 554
No 114
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=27.21 E-value=80 Score=17.79 Aligned_cols=35 Identities=9% Similarity=0.154 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccc
Q 034101 62 KEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRT 97 (104)
Q Consensus 62 k~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~ 97 (104)
.+.++..+...||+.. ..+..+.+.+.|.-|.+..
T Consensus 12 ~~~~~~~~k~~~p~~~-~~~i~~~~~~~W~~l~~~e 46 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS-NKEISKILAQMWKNLSEEE 46 (69)
T ss_dssp HHHHHHHHHHHSTTST-HHHHHHHHHHHHHCSHHHH
T ss_pred HHHHHHHHHHHhcccc-cccchhhHHHHHhcCCHHH
Confidence 4556666777788774 5566666666666665544
No 115
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=26.83 E-value=1.2e+02 Score=16.76 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=23.3
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 63 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 63 ~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
+..+..+..-||+. ...+..+.+.+.|..|.+..+
T Consensus 13 ~~~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK 47 (66)
T cd01390 13 QEQRPKLKKENPDA-SVTEVTKILGEKWKELSEEEK 47 (66)
T ss_pred HHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 34555666678874 455677778888887776554
No 116
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=26.60 E-value=66 Score=17.00 Aligned_cols=30 Identities=37% Similarity=0.387 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVAN 72 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~ 72 (104)
..++..|..+.||++. ..|+..-+++..+.
T Consensus 14 ~~~s~~eia~~l~~s~----~tv~~~~~~~~~~l 43 (57)
T cd06170 14 EGKTNKEIADILGISE----KTVKTHLRNIMRKL 43 (57)
T ss_pred cCCCHHHHHHHHCCCH----HHHHHHHHHHHHHh
Confidence 4578889999999865 45555555544444
No 117
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=26.14 E-value=37 Score=20.77 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=20.8
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHHhCC
Q 034101 49 ILGVRESTPTEKVKEAHRRVMVANHP 74 (104)
Q Consensus 49 iLgl~~~~~~~eik~ayr~l~~~~HP 74 (104)
|..|..+.+.++||+.|.+.+....|
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~ 31 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSA 31 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCH
Confidence 45667778899999999999887655
No 118
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=26.00 E-value=1.5e+02 Score=20.86 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 034101 56 TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKD 91 (104)
Q Consensus 56 ~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~ 91 (104)
.|.++|++-...=...-.|.++-|-...++..++..
T Consensus 36 ~tR~dIR~LI~~G~I~~kp~kg~Sr~R~r~~~~~r~ 71 (150)
T PRK08570 36 ITREDIRELIKEGVIKAKPKKGISRGRARERHEKRK 71 (150)
T ss_pred hhHHHHHHHHHCCCeeecCccCCChHHHHHHHHHHH
Confidence 466777777777677778888888777776666554
No 119
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=25.78 E-value=82 Score=21.93 Aligned_cols=11 Identities=18% Similarity=-0.094 Sum_probs=8.1
Q ss_pred HHHHHHHHHHH
Q 034101 81 YLASKINEAKD 91 (104)
Q Consensus 81 ~~~~~i~~Ay~ 91 (104)
+.+..+|.+|+
T Consensus 94 ~~L~~lN~~Y~ 104 (158)
T TIGR03180 94 AALLEGNAAYE 104 (158)
T ss_pred HHHHHHHHHHH
Confidence 55677888886
No 120
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=25.24 E-value=1.6e+02 Score=21.91 Aligned_cols=33 Identities=21% Similarity=0.109 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVA 71 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~ 71 (104)
..++.+|--++||++.+.-...+.++-++|-..
T Consensus 130 ~g~s~~EIA~~lg~s~~tVk~~l~RAr~~Lr~~ 162 (293)
T PRK09636 130 FGVPFDEIASTLGRSPAACRQLASRARKHVRAA 162 (293)
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 456777888888888877777676666666654
No 121
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=25.06 E-value=75 Score=19.48 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=17.8
Q ss_pred hHhHHHHHHHHHHHHHHHHHh
Q 034101 2 AVAAAAYAGKYGIRAWQAFKA 22 (104)
Q Consensus 2 ~ia~~~~~~ra~~~A~~~~~~ 22 (104)
.++++.+++|.|.++|+-...
T Consensus 9 ~~~ag~~a~k~~~~~W~~~tg 29 (78)
T PF14019_consen 9 GLAAGFLAGKVFEQVWKKVTG 29 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 467888999999999987755
No 122
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=25.02 E-value=67 Score=17.59 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=17.1
Q ss_pred hCCCCCCCHHHHHHHHHHHHHH
Q 034101 50 LGVRESTPTEKVKEAHRRVMVA 71 (104)
Q Consensus 50 Lgl~~~~~~~eik~ayr~l~~~ 71 (104)
-||+++++.++|+..|......
T Consensus 4 ~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 4 GNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp ESETTTSSHHHHHHHHHTTSTE
T ss_pred cCCCCcCCHHHHHHHHHHhhhc
Confidence 4788999999999888775443
No 123
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=24.63 E-value=77 Score=16.57 Aligned_cols=30 Identities=30% Similarity=0.321 Sum_probs=18.3
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVAN 72 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~ 72 (104)
..++..|..+.||++. ..|+..-+++..+.
T Consensus 17 ~g~s~~eia~~l~is~----~tv~~~~~~~~~kl 46 (58)
T smart00421 17 EGLTNKEIAERLGISE----KTVKTHLSNIMRKL 46 (58)
T ss_pred cCCCHHHHHHHHCCCH----HHHHHHHHHHHHHH
Confidence 3467888888998865 44444444444433
No 124
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=24.29 E-value=1.1e+02 Score=21.15 Aligned_cols=11 Identities=18% Similarity=0.154 Sum_probs=7.5
Q ss_pred HHHHHHHHHHH
Q 034101 81 YLASKINEAKD 91 (104)
Q Consensus 81 ~~~~~i~~Ay~ 91 (104)
+.+..+|.+|+
T Consensus 94 ~~L~~lN~~Y~ 104 (157)
T TIGR03164 94 ARFTRLNNAYR 104 (157)
T ss_pred HHHHHHHHHHH
Confidence 44666777776
No 125
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=23.58 E-value=1.4e+02 Score=16.31 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 62 KEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 62 k~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
...++..++..|||. ...+..+.+...|..|.+..+
T Consensus 12 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~~k 47 (66)
T cd00084 12 SQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEEEK 47 (66)
T ss_pred HHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 345566666667763 234555666666666665443
No 126
>PF05379 Peptidase_C23: Carlavirus endopeptidase ; InterPro: IPR008041 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C23 (clan CA). The type example is Carlavirus (apple stem pitting virus) endopeptidase, this thought to play a role in the post-translational cleavage of the high molecular weight primary translation products of the virus.; GO: 0003968 RNA-directed RNA polymerase activity, 0016817 hydrolase activity, acting on acid anhydrides
Probab=23.44 E-value=77 Score=20.01 Aligned_cols=54 Identities=9% Similarity=0.056 Sum_probs=34.0
Q ss_pred hHhHHHHHHHHHHHHHHHHHhCCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCC
Q 034101 2 AVAAAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRES 55 (104)
Q Consensus 2 ~ia~~~~~~ra~~~A~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~ 55 (104)
+.|.|..++|--...++...+..........+.|.--..+..++.+++|+|...
T Consensus 7 i~AiA~aL~R~~~dVl~Vl~~~~~~~~~~~l~~G~Gl~l~~le~~f~~F~I~A~ 60 (89)
T PF05379_consen 7 IRAIAEALGRREQDVLAVLSRKCGEELLEELWSGEGLDLEDLEELFELFDICAH 60 (89)
T ss_pred hHHHHHHhCCCHHHHHHHHHhccCHHHHHHHHcCCCcCHHHHHHHHHHcCeEEE
Confidence 456666777777777766666554333344455554555667888888888653
No 127
>PLN00158 histone H2B; Provisional
Probab=23.16 E-value=1.2e+02 Score=20.46 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=12.7
Q ss_pred HHHHHHHHhCCCCCCCH
Q 034101 64 AHRRVMVANHPDAGGSH 80 (104)
Q Consensus 64 ayr~l~~~~HPDk~gs~ 80 (104)
-..+..++.|||.+-+.
T Consensus 32 YI~kVLKQVhPd~gIS~ 48 (116)
T PLN00158 32 YIYKVLKQVHPDTGISS 48 (116)
T ss_pred HHHHHHHHhCCCCCccH
Confidence 34667889999997654
No 128
>PTZ00463 histone H2B; Provisional
Probab=23.07 E-value=1.2e+02 Score=20.47 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=12.0
Q ss_pred HHHHHHHhCCCCCCCH
Q 034101 65 HRRVMVANHPDAGGSH 80 (104)
Q Consensus 65 yr~l~~~~HPDk~gs~ 80 (104)
..+..++.|||.+-|.
T Consensus 34 I~KVLKqVhPd~gIS~ 49 (117)
T PTZ00463 34 IFKVLKQVHPDTGISR 49 (117)
T ss_pred HHHHHHhhCCCCCccH
Confidence 4566778999997654
No 129
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=22.04 E-value=68 Score=17.25 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRRVM 69 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~ 69 (104)
-..+|..|.-+.||++. ..|+...++..
T Consensus 18 ~~~~t~~eIa~~lg~s~----~~V~~~~~~al 45 (50)
T PF04545_consen 18 FEGLTLEEIAERLGISR----STVRRILKRAL 45 (50)
T ss_dssp TST-SHHHHHHHHTSCH----HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCcH----HHHHHHHHHHH
Confidence 56788999999999955 55555555443
No 130
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=21.91 E-value=2.1e+02 Score=17.84 Aligned_cols=51 Identities=8% Similarity=0.014 Sum_probs=33.7
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHH----HHHHHHHHHhccccc
Q 034101 48 LILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLA----SKINEAKDIMLRRTK 98 (104)
Q Consensus 48 ~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~----~~i~~Ay~~L~~~~k 98 (104)
.+.|++|.++.+||..+=...+.+..=-... +.+.| .+|..+-..|++...
T Consensus 7 ~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps~an~eaF~~AV~eva~at~~LL~~L~ 64 (78)
T PF10041_consen 7 TLRNFEPPATDEEIRAAALQYVRKVSGFRKPSAANAEAFDRAVAEVAAATRRLLDSLP 64 (78)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHHHccCCCcchhhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4678999999999999988888876532222 22333 446666666665543
No 131
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=21.69 E-value=1.8e+02 Score=17.09 Aligned_cols=35 Identities=6% Similarity=0.072 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccc
Q 034101 62 KEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRT 97 (104)
Q Consensus 62 k~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~ 97 (104)
.+.++..+..-||+. ...+..+.|.+.|..|.++.
T Consensus 13 ~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~ee 47 (77)
T cd01389 13 RQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEV 47 (77)
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHH
Confidence 345556666667765 33455555666666665543
No 132
>KOG3219 consensus Transcription initiation factor TFIID, subunit TAF11 [Transcription]
Probab=21.68 E-value=97 Score=22.66 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=21.0
Q ss_pred HHHHHHhCCC---CCCCHHHHHHHHHHHHHH
Q 034101 44 REAALILGVR---ESTPTEKVKEAHRRVMVA 71 (104)
Q Consensus 44 ~ea~~iLgl~---~~~~~~eik~ayr~l~~~ 71 (104)
++|+.|.+.- ...-+..|+.+||+|-.+
T Consensus 151 EeAl~V~~~~~e~~PLqP~HIREA~rrL~~q 181 (195)
T KOG3219|consen 151 EEALDVREEWGESGPLQPKHIREAYRRLKLQ 181 (195)
T ss_pred HHHHHHHHHhccCCCCCcHHHHHHHHHHHhc
Confidence 6776665543 457899999999999764
No 133
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=21.40 E-value=54 Score=17.81 Aligned_cols=26 Identities=42% Similarity=0.450 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHH
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRR 67 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~ 67 (104)
-..++..|.-+.||+++ ..|+..+.+
T Consensus 24 ~~g~s~~eIa~~l~~s~----~~v~~~l~r 49 (54)
T PF08281_consen 24 FQGMSYAEIAEILGISE----STVKRRLRR 49 (54)
T ss_dssp TS---HHHHHHHCTS-H----HHHHHHHHH
T ss_pred HHCcCHHHHHHHHCcCH----HHHHHHHHH
Confidence 56788899999999866 444444443
No 134
>PF08988 DUF1895: Protein of unknown function (DUF1895); InterPro: IPR015081 The YscE protein, produced by the pathogen Yersinia, assumes a secondary structure composed of two anti-parallel alpha-helices separated by a flexible loop. The function of this protein is, as yet, unknown. ; PDB: 1ZW0_B 2P58_A 2UWJ_E 2Q1K_D 3PH0_B.
Probab=21.38 E-value=1.4e+02 Score=17.95 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=14.8
Q ss_pred CCCCCHHHHHHHHHHHHHhc
Q 034101 75 DAGGSHYLASKINEAKDIML 94 (104)
Q Consensus 75 Dk~gs~~~~~~i~~Ay~~L~ 94 (104)
|+|++|+.++.+...++.+.
T Consensus 35 ~~G~~P~eyQq~q~~~~Aie 54 (68)
T PF08988_consen 35 DRGGTPQEYQQLQQQYDAIE 54 (68)
T ss_dssp TCTSSHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHH
Confidence 78999988888766665543
No 135
>KOG1573 consensus Aldehyde reductase [General function prediction only]
Probab=21.36 E-value=2.4e+02 Score=20.42 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=31.6
Q ss_pred CCCCCCCHHHHHHHhCC-----CCCCCHHHHHHHHHH--HHHHhCCCC
Q 034101 36 GFQPVMTRREAALILGV-----RESTPTEKVKEAHRR--VMVANHPDA 76 (104)
Q Consensus 36 ~~~~~m~~~ea~~iLgl-----~~~~~~~eik~ayr~--l~~~~HPDk 76 (104)
-....|+.-|++++|+= +|+.+...|.-+|.. .+++.|||+
T Consensus 68 f~~~kM~i~ec~ell~~~vDESDPDlDepni~Ha~QtAE~iR~~~Pd~ 115 (204)
T KOG1573|consen 68 FDKMKMTIWECCELLNEVVDESDPDLDEPNIQHALQTAEAIRKDYPDE 115 (204)
T ss_pred cchhheeHHHHHHHHHhhhcccCCCCchHHHHHHHHHHHHHHHhCCCc
Confidence 34578999999999863 345778888888764 578899998
No 136
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=20.68 E-value=1.3e+02 Score=17.14 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=17.8
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHH
Q 034101 48 LILGVRESTPTEKVKEAHRRVMV 70 (104)
Q Consensus 48 ~iLgl~~~~~~~eik~ayr~l~~ 70 (104)
.+=|+.|..+++|.|+.-|.=+.
T Consensus 3 ~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 3 RIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred ccccCCCCCCHHHHHHHHHHHHH
Confidence 35588899999999988776544
No 137
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=4.9e+02 Score=21.95 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhCCCchhhhhhhcCCCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q 034101 7 AYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKI 86 (104)
Q Consensus 7 ~~~~ra~~~A~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i 86 (104)
++++-++..+++...+..=.....+|++.+.. |+. -+.-.+|+...-|.+..|||+.=+.+..+.+
T Consensus 379 G~isDY~AE~~reMRKrS~sd~i~rf~kLgnN-----------lnq---RDviavkrt~SGLlKLL~Pd~t~~kee~k~i 444 (683)
T COG4930 379 GVISDYFAEALREMRKRSLSDLIGRFVKLGNN-----------LNQ---RDVIAVKRTTSGLLKLLFPDKTFDKEELKTI 444 (683)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------cch---hhhHHHHHHHHHHHHHhCCCCCcCHHHHHHH
Confidence 35566777788877776533333444322211 111 2445678889999999999998887766665
Q ss_pred H
Q 034101 87 N 87 (104)
Q Consensus 87 ~ 87 (104)
-
T Consensus 445 l 445 (683)
T COG4930 445 L 445 (683)
T ss_pred H
Confidence 3
No 138
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=20.17 E-value=2e+02 Score=22.80 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 034101 56 TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKD 91 (104)
Q Consensus 56 ~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~ 91 (104)
.|.++|++....=+..-.|.++-|-...++..++..
T Consensus 36 iTReDIRkLIkdGlIikKp~KGhSRgRaRkr~eaKr 71 (357)
T PTZ00436 36 NSRKSVRKLIKDGLIIRKPVKVHSRSRWRHMKEAKS 71 (357)
T ss_pred hhHHHHHHHHHCCCeeecCcccCChHHHHHHHHHHH
Confidence 466777777777667777888777666666555543
No 139
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=20.11 E-value=1.5e+02 Score=15.86 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhCC
Q 034101 9 AGKYGIRAWQAFKARP 24 (104)
Q Consensus 9 ~~ra~~~A~~~~~~~~ 24 (104)
+...|+.||.||.+..
T Consensus 18 l~GlfvaAylQYrRg~ 33 (37)
T PRK00665 18 LAGLFVAAWNQYKRGN 33 (37)
T ss_pred HHHHHHHHHHHHhccc
Confidence 3457889999997744
No 140
>PF14138 COX16: Cytochrome c oxidase assembly protein COX16
Probab=20.11 E-value=2.3e+02 Score=17.46 Aligned_cols=20 Identities=0% Similarity=-0.100 Sum_probs=10.0
Q ss_pred hHhHHHHHHHHHHHHHHHHH
Q 034101 2 AVAAAAYAGKYGIRAWQAFK 21 (104)
Q Consensus 2 ~ia~~~~~~ra~~~A~~~~~ 21 (104)
+|++|++...-|.+.=-+..
T Consensus 10 liV~GS~gL~~ftq~Rye~~ 29 (80)
T PF14138_consen 10 LIVGGSFGLSEFTQIRYERR 29 (80)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 35556666555554433333
No 141
>PF04512 Baculo_PEP_N: Baculovirus polyhedron envelope protein, PEP, N terminus; InterPro: IPR007600 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=20.04 E-value=98 Score=20.05 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=26.2
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCC
Q 034101 42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPD 75 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPD 75 (104)
..+|...||+++ ....+.|-..++++-+..-|-
T Consensus 18 gaDEil~IL~lp-~s~l~~iP~~~kk~w~dl~~~ 50 (97)
T PF04512_consen 18 GADEILSILRLP-CSALQSIPRSHKKLWKDLEPC 50 (97)
T ss_pred cHHHHHHHhCCC-HHHHHHcCHHHHHHHHHhccc
Confidence 568999999999 556667878888888877773
Done!