Query 034101
Match_columns 104
No_of_seqs 113 out of 1323
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:36:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2guz_A Mitochondrial import in 99.9 4.2E-23 1.4E-27 126.4 7.8 68 32-99 2-70 (71)
2 2guz_B Mitochondrial import in 99.8 4.5E-21 1.5E-25 116.0 5.7 58 41-98 1-61 (65)
3 1faf_A Large T antigen; J doma 99.8 6.8E-20 2.3E-24 114.2 5.6 64 41-104 8-73 (79)
4 2ys8_A RAB-related GTP-binding 99.7 3.5E-18 1.2E-22 108.6 6.8 59 44-102 27-88 (90)
5 1iur_A KIAA0730 protein; DNAJ 99.7 6.3E-18 2.1E-22 107.4 7.2 63 36-98 8-75 (88)
6 2yua_A Williams-beuren syndrom 99.7 1.7E-17 5.8E-22 106.9 6.6 65 36-100 9-77 (99)
7 2dn9_A DNAJ homolog subfamily 99.7 1.4E-17 4.6E-22 103.0 5.5 61 40-100 3-67 (79)
8 2ctr_A DNAJ homolog subfamily 99.7 2.3E-17 7.8E-22 104.2 5.6 60 41-100 4-66 (88)
9 2o37_A Protein SIS1; HSP40, J- 99.7 3.1E-17 1.1E-21 104.4 5.8 59 42-100 6-65 (92)
10 2ej7_A HCG3 gene; HCG3 protein 99.7 3.1E-17 1E-21 102.0 5.2 59 42-100 7-70 (82)
11 2och_A Hypothetical protein DN 99.7 4.7E-17 1.6E-21 99.3 5.7 57 44-100 8-65 (73)
12 2ctp_A DNAJ homolog subfamily 99.7 1.6E-17 5.6E-22 102.5 3.5 61 40-100 3-66 (78)
13 1gh6_A Large T antigen; tumor 99.7 1.4E-17 4.8E-22 110.4 3.0 60 43-102 7-68 (114)
14 2ctw_A DNAJ homolog subfamily 99.7 6.2E-17 2.1E-21 106.0 5.9 64 37-100 10-77 (109)
15 2dmx_A DNAJ homolog subfamily 99.7 6.5E-17 2.2E-21 102.6 5.0 58 43-100 8-70 (92)
16 2cug_A Mkiaa0962 protein; DNAJ 99.6 1.3E-16 4.4E-21 100.7 5.1 58 43-100 16-76 (88)
17 2ctq_A DNAJ homolog subfamily 99.6 1.3E-16 4.3E-21 104.9 5.0 60 41-100 17-80 (112)
18 1hdj_A Human HSP40, HDJ-1; mol 99.6 1E-16 3.5E-21 98.6 4.2 56 45-100 4-62 (77)
19 1wjz_A 1700030A21RIK protein; 99.6 2.8E-17 9.7E-22 104.4 1.7 63 38-100 10-82 (94)
20 2l6l_A DNAJ homolog subfamily 99.6 4.1E-16 1.4E-20 107.3 5.9 62 39-100 5-76 (155)
21 2lgw_A DNAJ homolog subfamily 99.6 4.6E-16 1.6E-20 100.5 5.5 56 45-100 3-63 (99)
22 2qsa_A DNAJ homolog DNJ-2; J-d 99.6 4.7E-16 1.6E-20 101.5 3.8 58 43-100 14-79 (109)
23 2pf4_E Small T antigen; PP2A, 99.6 1.8E-16 6.3E-21 111.8 0.7 59 43-101 10-70 (174)
24 1bq0_A DNAJ, HSP40; chaperone, 99.6 2E-16 6.8E-21 102.4 -0.5 56 45-100 4-63 (103)
25 3apq_A DNAJ homolog subfamily 99.5 8.2E-15 2.8E-19 103.2 4.4 57 44-100 2-62 (210)
26 3lz8_A Putative chaperone DNAJ 99.5 1.7E-15 5.7E-20 115.6 0.0 63 38-100 22-87 (329)
27 2qwo_B Putative tyrosine-prote 99.5 3.5E-15 1.2E-19 95.5 0.9 51 45-95 34-91 (92)
28 1fpo_A HSC20, chaperone protei 99.5 1.6E-14 5.4E-19 101.3 4.1 56 45-100 2-68 (171)
29 3hho_A CO-chaperone protein HS 99.5 3.2E-14 1.1E-18 99.9 4.2 57 44-100 4-71 (174)
30 3bvo_A CO-chaperone protein HS 99.4 7.6E-14 2.6E-18 100.6 4.8 58 43-100 42-110 (207)
31 1n4c_A Auxilin; four helix bun 99.4 9.8E-15 3.3E-19 103.6 -0.4 57 44-100 117-180 (182)
32 3ag7_A Putative uncharacterize 99.4 8.2E-15 2.8E-19 95.8 -0.9 53 44-97 41-104 (106)
33 3uo3_A J-type CO-chaperone JAC 99.3 1.8E-13 6E-18 96.9 -0.0 58 43-100 10-75 (181)
34 3apo_A DNAJ homolog subfamily 99.2 7.7E-13 2.6E-17 108.2 -0.4 62 39-100 16-81 (780)
35 2y4t_A DNAJ homolog subfamily 98.5 1.4E-07 4.8E-12 69.8 4.6 57 45-101 383-446 (450)
36 2pzi_A Probable serine/threoni 57.3 5.3 0.00018 31.9 2.2 43 46-92 631-675 (681)
37 4dbb_A Amyloid beta A4 precurs 41.8 19 0.00063 24.0 2.7 37 5-51 121-157 (162)
38 1ug2_A 2610100B20RIK gene prod 37.0 20 0.00068 22.4 2.0 21 56-76 68-88 (95)
39 1ckt_A High mobility group 1 p 34.4 60 0.002 17.8 4.0 36 63-98 14-50 (71)
40 2ket_A Cathelicidin-6; antimic 34.1 40 0.0014 15.8 2.7 17 59-75 4-20 (27)
41 4a3n_A Transcription factor SO 34.1 47 0.0016 18.2 3.3 36 62-98 14-49 (71)
42 2d7l_A WD repeat and HMG-box D 33.9 27 0.00093 20.5 2.3 37 62-98 17-53 (81)
43 2zfd_A Calcineurin B-like prot 31.9 1.1E+02 0.0038 20.2 5.7 51 37-87 135-192 (226)
44 3f27_D Transcription factor SO 30.6 61 0.0021 18.4 3.5 36 62-98 18-53 (83)
45 2lr8_A CAsp8-associated protei 34.7 12 0.00041 22.1 0.0 22 55-76 47-68 (70)
46 1ku3_A Sigma factor SIGA; heli 26.6 35 0.0012 18.9 1.8 31 39-69 29-59 (73)
47 2jpc_A SSRB; DNA binding prote 26.5 27 0.00091 18.4 1.2 30 39-72 12-41 (61)
48 2lxi_A RNA-binding protein 10; 25.9 52 0.0018 18.9 2.6 20 50-69 7-26 (91)
49 1hme_A High mobility group pro 25.2 96 0.0033 17.3 4.6 36 62-98 18-53 (77)
50 2eqz_A High mobility group pro 24.9 68 0.0023 18.5 3.0 36 63-98 28-64 (86)
51 1xsv_A Hypothetical UPF0122 pr 24.6 65 0.0022 19.7 3.0 55 38-94 39-93 (113)
52 1tty_A Sigma-A, RNA polymerase 23.4 42 0.0014 19.4 1.8 30 39-68 37-66 (87)
53 1hry_A Human SRY; DNA, DNA-bin 23.2 71 0.0024 17.8 2.8 36 62-98 16-51 (76)
54 1tzy_B Histone H2B; histone-fo 23.0 56 0.0019 21.3 2.4 17 64-80 41-57 (126)
55 2i8b_A Minor nucleoprotein VP3 22.9 47 0.0016 22.0 2.1 20 59-82 85-104 (152)
56 3u2b_C Transcription factor SO 22.8 84 0.0029 17.6 3.1 35 62-97 14-48 (79)
57 2crj_A SWI/SNF-related matrix- 22.5 96 0.0033 18.1 3.4 35 63-98 20-54 (92)
58 1i11_A Transcription factor SO 22.3 85 0.0029 17.8 3.0 35 63-98 17-51 (81)
59 2nqb_D Histone H2B; nucleosome 22.3 59 0.002 21.1 2.4 17 64-80 38-54 (123)
60 1qqr_A Streptokinase domain B; 22.3 51 0.0017 21.8 2.1 30 47-76 35-64 (138)
61 2p7v_B Sigma-70, RNA polymeras 21.4 30 0.001 18.9 0.8 28 39-70 24-51 (68)
62 1wgf_A Upstream binding factor 21.4 88 0.003 18.2 3.0 35 63-98 33-67 (90)
63 1iqt_A AUF1, heterogeneous nuc 21.1 86 0.0029 16.7 2.8 19 50-68 5-23 (75)
64 1k99_A Upstream binding factor 21.1 1.4E+02 0.0049 17.7 4.2 35 63-98 23-57 (99)
65 2ast_A S-phase kinase-associat 21.0 1.1E+02 0.0037 19.8 3.6 23 40-62 128-150 (159)
66 2ehb_A Calcineurin B-like prot 20.9 1.7E+02 0.0058 18.6 6.6 51 38-88 125-182 (207)
67 3hug_A RNA polymerase sigma fa 20.8 60 0.0021 18.7 2.1 31 38-68 51-81 (92)
68 2cs1_A PMS1 protein homolog 1; 20.3 87 0.003 18.3 2.8 35 63-98 20-54 (92)
69 2e6o_A HMG box-containing prot 20.3 97 0.0033 17.9 3.0 36 62-98 29-64 (87)
No 1
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.2e-23 Score=126.38 Aligned_cols=68 Identities=51% Similarity=0.869 Sum_probs=64.5
Q ss_pred hhcCCCCCCCCHHHHHHHhCCCC-CCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccC
Q 034101 32 FYEGGFQPVMTRREAALILGVRE-STPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKG 99 (104)
Q Consensus 32 ~~~~~~~~~m~~~ea~~iLgl~~-~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~ 99 (104)
|+.+++...|+.+++|+||||++ +++.++|+++||+|++++|||++|+++.|++|++||++|+++..|
T Consensus 2 ~~~g~~~~~m~~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 2 FLKGGFDPKMNSKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp CCCSCCCSSCCHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred CcCCCCCCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 57889999999999999999999 799999999999999999999999999999999999999987655
No 2
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.5e-21 Score=116.03 Aligned_cols=58 Identities=29% Similarity=0.420 Sum_probs=55.2
Q ss_pred CCHHHHHHHhCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 41 MTRREAALILGVRES---TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 41 m~~~ea~~iLgl~~~---~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
||.+||+.||||+++ ++.++|+++||+|+..||||+|||+|++++|++|+++|..+.+
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~~~ 61 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWELA 61 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999 8999999999999999999999999999999999999987543
No 3
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.80 E-value=6.8e-20 Score=114.23 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=58.7
Q ss_pred CCHHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q 034101 41 MTRREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNSAF 104 (104)
Q Consensus 41 m~~~ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~~~~ 104 (104)
....++|+||||+++ ++.++||++||+|++++|||++|+.+.|++|++||++|+++.+|..+.|
T Consensus 8 ~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~~~ 73 (79)
T 1faf_A 8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNL 73 (79)
T ss_dssp HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence 345789999999999 9999999999999999999999999999999999999999888876543
No 4
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=108.59 Aligned_cols=59 Identities=27% Similarity=0.425 Sum_probs=55.5
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHhcccccCCCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAG---GSHYLASKINEAKDIMLRRTKGSNS 102 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~---gs~~~~~~i~~Ay~~L~~~~k~~~~ 102 (104)
.++|+||||+++++.++||++||+|++++|||++ +..+.|++|++||++|.++.+|+.+
T Consensus 27 ~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~~ 88 (90)
T 2ys8_A 27 KDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPS 88 (90)
T ss_dssp SSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccCC
Confidence 5789999999999999999999999999999997 5679999999999999999999876
No 5
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.73 E-value=6.3e-18 Score=107.43 Aligned_cols=63 Identities=13% Similarity=0.133 Sum_probs=57.2
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhccccc
Q 034101 36 GFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 36 ~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k 98 (104)
+...+++..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|++...
T Consensus 8 ~~~~~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~ 75 (88)
T 1iur_A 8 LVPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAF 75 (88)
T ss_dssp CCCSSSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcc
Confidence 34678889999999999999999999999999999999999875 4889999999999998654
No 6
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=106.90 Aligned_cols=65 Identities=20% Similarity=0.168 Sum_probs=58.8
Q ss_pred CCCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 36 GFQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 36 ~~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.....|+..++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 9 ~~~~~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 77 (99)
T 2yua_A 9 QGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77 (99)
T ss_dssp CCCCSSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred CCCCCCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 34567888999999999999999999999999999999999863 689999999999999998764
No 7
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.4e-17 Score=102.95 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=54.8
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 40 VMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++..++|+||||+++++.++|+++||++++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 67 (79)
T 2dn9_A 3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRK 67 (79)
T ss_dssp SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 3455688999999999999999999999999999999764 588999999999999988764
No 8
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=2.3e-17 Score=104.18 Aligned_cols=60 Identities=23% Similarity=0.290 Sum_probs=54.3
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
++..++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 66 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRK 66 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHH
Confidence 445679999999999999999999999999999999876 578999999999999988764
No 9
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.69 E-value=3.1e-17 Score=104.38 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=54.5
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHhcccccCC
Q 034101 42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAG-GSHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~-gs~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
...++|+||||+++++.++|+++|++|++++|||++ ++.+.|++|++||++|+++.+|+
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE 65 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHH
Confidence 446899999999999999999999999999999997 57899999999999999988764
No 10
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=102.00 Aligned_cols=59 Identities=20% Similarity=0.275 Sum_probs=53.2
Q ss_pred CHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101 42 TRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 42 ~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
...++|+||||+++++.++|+++|+++++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHH
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 34688999999999999999999999999999999865 368999999999999998764
No 11
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.68 E-value=4.7e-17 Score=99.33 Aligned_cols=57 Identities=21% Similarity=0.317 Sum_probs=52.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.++|+++|+++++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 8 ~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~ 65 (73)
T 2och_A 8 TGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ 65 (73)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHH
Confidence 578999999999999999999999999999999764 799999999999999998764
No 12
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-17 Score=102.45 Aligned_cols=61 Identities=25% Similarity=0.281 Sum_probs=54.8
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101 40 VMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++..++|+||||+++++.++|+++|+++++++|||+++ +.+.|++|++||++|.++.+|+
T Consensus 3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 66 (78)
T 2ctp_A 3 SGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66 (78)
T ss_dssp CSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 345678999999999999999999999999999999985 4588999999999999988764
No 13
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.67 E-value=1.4e-17 Score=110.35 Aligned_cols=60 Identities=22% Similarity=0.198 Sum_probs=56.4
Q ss_pred HHHHHHHhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCCC
Q 034101 43 RREAALILGVRESTPT--EKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSNS 102 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~--~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~~ 102 (104)
..++|+||||+++++. ++||++||+|++++|||++++.+.|++|++||++|.++.+|+..
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~ 68 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQ 68 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCS
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHh
Confidence 4578999999999988 99999999999999999999999999999999999999999863
No 14
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=6.2e-17 Score=106.00 Aligned_cols=64 Identities=20% Similarity=0.307 Sum_probs=57.0
Q ss_pred CCCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 37 FQPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 37 ~~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
....++..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 10 r~~~~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~ 77 (109)
T 2ctw_A 10 RSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77 (109)
T ss_dssp CCTTSCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred cccCCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHH
Confidence 3455666789999999999999999999999999999999874 588999999999999988764
No 15
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=6.5e-17 Score=102.63 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=52.7
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..++|+||||+++++.++|+++|++|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 8 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 70 (92)
T 2dmx_A 8 MANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRS 70 (92)
T ss_dssp CCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4578999999999999999999999999999999764 478999999999999988763
No 16
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.65 E-value=1.3e-16 Score=100.69 Aligned_cols=58 Identities=21% Similarity=0.307 Sum_probs=53.2
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..++|+||||+++++.++|+++||++++++|||+++ ..+.|++|++||++|.++.+|+
T Consensus 16 ~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 76 (88)
T 2cug_A 16 DFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76 (88)
T ss_dssp SSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHH
Confidence 458899999999999999999999999999999975 4689999999999999988764
No 17
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-16 Score=104.89 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=54.8
Q ss_pred CCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 41 MTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 41 m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
+...++|+||||+++++.++|+++||+|++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~ 80 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRA 80 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 445789999999999999999999999999999999874 689999999999999998764
No 18
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.64 E-value=1e-16 Score=98.63 Aligned_cols=56 Identities=27% Similarity=0.349 Sum_probs=51.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGG---SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g---s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
++|+||||+++++.++|+++|+++++++|||+++ +.+.|++|++||++|+++.+|+
T Consensus 4 ~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 62 (77)
T 1hdj_A 4 DYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62 (77)
T ss_dssp CSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHH
Confidence 5699999999999999999999999999999975 4689999999999999988764
No 19
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.64 E-value=2.8e-17 Score=104.41 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=56.2
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----------CHHHHHHHHHHHHHhcccccCC
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----------SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----------s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
...|+..++|+||||+++++.++||++||+|++++|||++. ..+.|++|++||++|.++.+|+
T Consensus 10 ~~~~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~ 82 (94)
T 1wjz_A 10 LEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKK 82 (94)
T ss_dssp CSSSSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHH
T ss_pred cccCCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 34567789999999999999999999999999999999964 2478999999999999998764
No 20
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.62 E-value=4.1e-16 Score=107.26 Aligned_cols=62 Identities=19% Similarity=0.270 Sum_probs=55.5
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHHhcccccCC
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----------HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----------~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..|+..++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|+++.+|+
T Consensus 5 ~~~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~ 76 (155)
T 2l6l_A 5 EQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKR 76 (155)
T ss_dssp CCCCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHC
T ss_pred ccCCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34666799999999999999999999999999999999653 278999999999999998875
No 21
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=100.46 Aligned_cols=56 Identities=25% Similarity=0.322 Sum_probs=51.4
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
++|+||||+++++.++||++||++++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 3 d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~ 63 (99)
T 2lgw_A 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKRE 63 (99)
T ss_dssp CHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 57999999999999999999999999999999864 378999999999999988764
No 22
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.59 E-value=4.7e-16 Score=101.46 Aligned_cols=58 Identities=17% Similarity=0.154 Sum_probs=53.3
Q ss_pred HHHHHHHhCCCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVREST-PTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~~-~~~eik~ayr~l~~~~HPDk~gs-------~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..++|+||||++++ +.++|+++||++++++|||++++ .+.|++|++||++|.++.+|+
T Consensus 14 ~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~ 79 (109)
T 2qsa_A 14 LENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKT 79 (109)
T ss_dssp TSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 46789999999999 99999999999999999999876 488999999999999998764
No 23
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.58 E-value=1.8e-16 Score=111.81 Aligned_cols=59 Identities=22% Similarity=0.203 Sum_probs=52.0
Q ss_pred HHHHHHHhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccccCCC
Q 034101 43 RREAALILGVRESTP--TEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTKGSN 101 (104)
Q Consensus 43 ~~ea~~iLgl~~~~~--~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k~~~ 101 (104)
..++|+||||+++++ .++||++||++++++|||++++.+.|++|++||++|+++.+|+.
T Consensus 10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~ 70 (174)
T 2pf4_E 10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAH 70 (174)
T ss_dssp HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 468999999999987 69999999999999999999999999999999999999988753
No 24
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.56 E-value=2e-16 Score=102.43 Aligned_cols=56 Identities=23% Similarity=0.385 Sum_probs=51.2
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|+++.+|+
T Consensus 4 ~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~ 63 (103)
T 1bq0_A 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63 (103)
T ss_dssp CSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHH
T ss_pred CHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 56999999999999999999999999999999763 578999999999999988764
No 25
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.51 E-value=8.2e-15 Score=103.22 Aligned_cols=57 Identities=21% Similarity=0.356 Sum_probs=51.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++.++||++||++++++|||+++ ..+.|++|++||++|.++.+|+
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~ 62 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHH
Confidence 36899999999999999999999999999999975 3578999999999999998764
No 26
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.50 E-value=1.7e-15 Score=115.62 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHHhcccccCC
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS---HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs---~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
...|+..++|+||||+++++.++||++||+|++++|||++.+ .+.|++|++||++|+++.+|+
T Consensus 22 ~~~m~~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~ 87 (329)
T 3lz8_A 22 SNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87 (329)
T ss_dssp ------------------------------------------------------------------
T ss_pred cccccccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhc
Confidence 456788999999999999999999999999999999999754 588999999999999998886
No 27
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.49 E-value=3.5e-15 Score=95.54 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=45.9
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcc
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLR 95 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-------~~~~~~i~~Ay~~L~~ 95 (104)
..|++|||+++++.++||++||++++++|||++++ .+.|+.|++||++|.+
T Consensus 34 ~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 44899999999999999999999999999999642 3579999999999985
No 28
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.48 E-value=1.6e-14 Score=101.30 Aligned_cols=56 Identities=16% Similarity=0.156 Sum_probs=50.3
Q ss_pred HHHHHhCCCCCC--CHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 034101 45 EAALILGVREST--PTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 45 ea~~iLgl~~~~--~~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
++|+||||++++ +.++|+++||++++++|||++++ .+.|+.|++||++|+++.+|+
T Consensus 2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 68 (171)
T 1fpo_A 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRA 68 (171)
T ss_dssp HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence 579999999998 99999999999999999999653 257999999999999998874
No 29
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.46 E-value=3.2e-14 Score=99.94 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=50.5
Q ss_pred HHHHHHhCCCCCCC--HHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTP--TEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~--~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
.++|+||||+++++ .++|+++||++++++|||++++ .+.|..|++||++|+++.+|+
T Consensus 4 ~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~ 71 (174)
T 3hho_A 4 MNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRA 71 (174)
T ss_dssp CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 46799999999876 9999999999999999999652 267999999999999998764
No 30
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.44 E-value=7.6e-14 Score=100.56 Aligned_cols=58 Identities=17% Similarity=0.204 Sum_probs=50.9
Q ss_pred HHHHHHHhCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALILGVRES--TPTEKVKEAHRRVMVANHPDAGGS---------HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iLgl~~~--~~~~eik~ayr~l~~~~HPDk~gs---------~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..++|+||||+++ ++.++|+++||+|++++|||++++ .+.|++||+||++|+++.+|+
T Consensus 42 ~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~ 110 (207)
T 3bvo_A 42 TRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRG 110 (207)
T ss_dssp TCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 4578999999986 799999999999999999999652 246799999999999998874
No 31
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.43 E-value=9.8e-15 Score=103.60 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=51.9
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-------HHHHHHHHHHHHHhcccccCC
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS-------HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs-------~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
+++|+||||+++++.++||++||++++++|||++.+ .+.|++|++||++|.++.+|+
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~ 180 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKP 180 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhh
Confidence 467999999999999999999999999999999642 468999999999999999886
No 32
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.42 E-value=8.2e-15 Score=95.84 Aligned_cols=53 Identities=17% Similarity=0.092 Sum_probs=47.0
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCC----C-------HHHHHHHHHHHHHhcccc
Q 034101 44 REAALILGVRESTPTEKVKEAHRRVMVANHPDAGG----S-------HYLASKINEAKDIMLRRT 97 (104)
Q Consensus 44 ~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~g----s-------~~~~~~i~~Ay~~L~~~~ 97 (104)
.++|+|||++. ++.++||++||++++++|||++. + .+.|++|++||++|+++.
T Consensus 41 ~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 41 SGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp SCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 46799999986 99999999999999999999953 3 578999999999999864
No 33
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.31 E-value=1.8e-13 Score=96.86 Aligned_cols=58 Identities=14% Similarity=0.207 Sum_probs=51.4
Q ss_pred HHHHHHHh------CCCC-CCCHHHHHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhcccccCC
Q 034101 43 RREAALIL------GVRE-STPTEKVKEAHRRVMVANHPDAGG-SHYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 43 ~~ea~~iL------gl~~-~~~~~eik~ayr~l~~~~HPDk~g-s~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
..++|+|| |+++ +++.++|+++||+|++++|||+++ +.+.|++|++||++|+++.+|+
T Consensus 10 ~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~ 75 (181)
T 3uo3_A 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRS 75 (181)
T ss_dssp SCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHH
T ss_pred CCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHH
Confidence 34779999 4665 799999999999999999999987 6788999999999999998774
No 34
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.23 E-value=7.7e-13 Score=108.22 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHHhcccccCC
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGS----HYLASKINEAKDIMLRRTKGS 100 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs----~~~~~~i~~Ay~~L~~~~k~~ 100 (104)
......++|+||||+++++.++||++||+|++++|||++++ .+.|++|++||++|+++.+|+
T Consensus 16 ~~~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~ 81 (780)
T 3apo_A 16 EGRHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81 (780)
T ss_dssp -------CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHH
T ss_pred CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHH
Confidence 34445789999999999999999999999999999999752 478999999999999998774
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=98.46 E-value=1.4e-07 Score=69.79 Aligned_cols=57 Identities=21% Similarity=0.285 Sum_probs=49.7
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHHhcccccCCC
Q 034101 45 EAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSH-------YLASKINEAKDIMLRRTKGSN 101 (104)
Q Consensus 45 ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~-------~~~~~i~~Ay~~L~~~~k~~~ 101 (104)
+.|.+||+....+.++++++|+++++.+|||+..++ +.|++|++||++|.|+.+|..
T Consensus 383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 457788999999999999999999999999997754 479999999999999999863
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=57.34 E-value=5.3 Score=31.90 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=32.1
Q ss_pred HHHHhCCCCCCCH--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 034101 46 AALILGVRESTPT--EKVKEAHRRVMVANHPDAGGSHYLASKINEAKDI 92 (104)
Q Consensus 46 a~~iLgl~~~~~~--~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~ 92 (104)
++.+||++.+... .+|+++||++++..+++ .+++.-|..|+.+
T Consensus 631 ~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 631 TNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp SSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred CcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 5579999665433 67999999999977644 4677778888765
No 37
>4dbb_A Amyloid beta A4 precursor protein-binding family 1; X11S/mints, PTB domain, chimera protein, protein transport; HET: IPA GOL; 1.90A {Rattus norvegicus}
Probab=41.78 E-value=19 Score=23.98 Aligned_cols=37 Identities=19% Similarity=0.118 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCchhhhhhhcCCCCCCCCHHHHHHHhC
Q 034101 5 AAAYAGKYGIRAWQAFKARPPTARMRKFYEGGFQPVMTRREAALILG 51 (104)
Q Consensus 5 ~~~~~~ra~~~A~~~~~~~~~~~~~~~~~~~~~~~~m~~~ea~~iLg 51 (104)
....+|+||..||+++.+.++. .....+..|+.++|+
T Consensus 121 I~~tigqAF~~ay~~~l~~~~~----------~~~~~~~~~~~~~~~ 157 (162)
T 4dbb_A 121 IAQSIGQAFSVAYQEFLRANGI----------NPEDLSQKEYSDLLN 157 (162)
T ss_dssp HHHHHHHHHHHHHGGGTTC--C----------CGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCC----------ChHHcccchhhhhcc
Confidence 4567899999999999887633 122345566666664
No 38
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=37.03 E-value=20 Score=22.35 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCC
Q 034101 56 TPTEKVKEAHRRVMVANHPDA 76 (104)
Q Consensus 56 ~~~~eik~ayr~l~~~~HPDk 76 (104)
-+..+|+.+|+.|++.+|-.+
T Consensus 68 ks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 68 KTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHHHHHHHh
Confidence 588999999999999998654
No 39
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=34.43 E-value=60 Score=17.83 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhccccc
Q 034101 63 EAHRRVMVANHPDAGG-SHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 63 ~ayr~l~~~~HPDk~g-s~~~~~~i~~Ay~~L~~~~k 98 (104)
...|..++.-||+... -.+..+.|.+.|..|.+..|
T Consensus 14 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 50 (71)
T 1ckt_A 14 QTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 50 (71)
T ss_dssp HHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTS
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHH
Confidence 4456666778998753 36788888999988887665
No 40
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=34.10 E-value=40 Score=15.77 Aligned_cols=17 Identities=6% Similarity=0.307 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhCCC
Q 034101 59 EKVKEAHRRVMVANHPD 75 (104)
Q Consensus 59 ~eik~ayr~l~~~~HPD 75 (104)
...++.|++++++..|-
T Consensus 4 krfrkkfkklfkklspv 20 (27)
T 2ket_A 4 KRFRKKFKKLFKKLSPV 20 (27)
T ss_dssp HHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 45688899999988875
No 41
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=34.06 E-value=47 Score=18.21 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 62 KEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 62 k~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
...+|..+..-||+.. ..+..+.|.+.|..|.+..|
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK 49 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEK 49 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHH
Confidence 4556667777788763 45666777777777766544
No 42
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.92 E-value=27 Score=20.52 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 62 KEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 62 k~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
-..+|..++.-||+.....+..+.|-+-|..|.+..|
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK 53 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEER 53 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHH
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHH
Confidence 3567777888899975356777778888877766544
No 43
>2zfd_A Calcineurin B-like protein 2; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP: a.39.1.5 PDB: 1uhn_A
Probab=31.93 E-value=1.1e+02 Score=20.16 Aligned_cols=51 Identities=8% Similarity=0.073 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHh-----CCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHH
Q 034101 37 FQPVMTRREAALIL-----GVRESTPTEKVKEAHRRVMVANHPDAGG--SHYLASKIN 87 (104)
Q Consensus 37 ~~~~m~~~ea~~iL-----gl~~~~~~~eik~ayr~l~~~~HPDk~g--s~~~~~~i~ 87 (104)
....++.+|...+| .+....+.+++....+.++....+|+.| +.+.|..+-
T Consensus 135 ~~G~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~EF~~~~ 192 (226)
T 2zfd_A 135 QQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKEEWRSLV 192 (226)
T ss_dssp SSSSEEHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHCSSCSSEECHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 34556777777666 3455667777777777777788777766 555555543
No 44
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=30.58 E-value=61 Score=18.43 Aligned_cols=36 Identities=14% Similarity=0.236 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 62 KEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 62 k~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
...+|..+..-||+.. ..+..+.|.+.|..|.++.+
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK 53 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEK 53 (83)
T ss_dssp HHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHH
Confidence 4566777778888863 45667777777777766544
No 45
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=34.72 E-value=12 Score=22.11 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 034101 55 STPTEKVKEAHRRVMVANHPDA 76 (104)
Q Consensus 55 ~~~~~eik~ayr~l~~~~HPDk 76 (104)
+-+.++|..+|+.|+..+|-.+
T Consensus 47 nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 47 DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 3577899999999999988654
No 46
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=26.56 E-value=35 Score=18.90 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVM 69 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~ 69 (104)
..+|..|--+.||++.+.-...+.++.++|-
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999977544444444554443
No 47
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.54 E-value=27 Score=18.41 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVMVAN 72 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~ 72 (104)
..++..|--+.||+++ ..|+...++...+.
T Consensus 12 ~g~s~~eIA~~l~is~----~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 12 EGYTNHGISEKLHISI----KTVETHRMNMMRKL 41 (61)
T ss_dssp TSCCSHHHHHHTCSCH----HHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCCH----HHHHHHHHHHHHHH
Confidence 3467788889999965 45555555544444
No 48
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=25.95 E-value=52 Score=18.95 Aligned_cols=20 Identities=0% Similarity=0.011 Sum_probs=17.3
Q ss_pred hCCCCCCCHHHHHHHHHHHH
Q 034101 50 LGVRESTPTEKVKEAHRRVM 69 (104)
Q Consensus 50 Lgl~~~~~~~eik~ayr~l~ 69 (104)
=||+++++.++|++.|....
T Consensus 7 ~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 7 RMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp ETCCSSCCHHHHHHHHHHHT
T ss_pred eCCCCCCCHHHHHHHHHHhC
Confidence 38999999999999998764
No 49
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=25.22 E-value=96 Score=17.26 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 62 KEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 62 k~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
...+|..+..-||+. ...+..+.|.+.|..|.+..+
T Consensus 18 ~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK 53 (77)
T 1hme_A 18 CSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDK 53 (77)
T ss_dssp HHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGS
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 455666677778885 456778888899988887665
No 50
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.87 E-value=68 Score=18.50 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=26.3
Q ss_pred HHHHHHHHHhCCCCCC-CHHHHHHHHHHHHHhccccc
Q 034101 63 EAHRRVMVANHPDAGG-SHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 63 ~ayr~l~~~~HPDk~g-s~~~~~~i~~Ay~~L~~~~k 98 (104)
..+|..++.-||+... ..+..+.|.+.|..|.+..+
T Consensus 28 ~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 64 (86)
T 2eqz_A 28 QTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEK 64 (86)
T ss_dssp HHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHH
Confidence 5566667778998754 46777888888888876654
No 51
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=24.63 E-value=65 Score=19.75 Aligned_cols=55 Identities=13% Similarity=-0.056 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRRVMVANHPDAGGSHYLASKINEAKDIML 94 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~ 94 (104)
-..+|..|--+.||++.++-...+.++.++|-.... ..+-.+.+..+...++-|.
T Consensus 39 ~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~--~~~~~~~~~~~~~~~~~~~ 93 (113)
T 1xsv_A 39 LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEK--KLELYQKFEQRREIYDEMK 93 (113)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH--HHCHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH--HHhHHhHHHHHHHHHHHHH
Confidence 456899999999999887656666666666655442 2244667777777777664
No 52
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.41 E-value=42 Score=19.36 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRV 68 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l 68 (104)
..+|..|--+.||++.+.-...+.++.++|
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALRKL 66 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 678999999999997654333344444443
No 53
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=23.20 E-value=71 Score=17.79 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 62 KEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 62 k~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
.+.+|..++.-||+. ...+..+.|.+.|..|.++.|
T Consensus 16 ~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK 51 (76)
T 1hry_A 16 SRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEK 51 (76)
T ss_dssp HHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHH
Confidence 355666677778876 344566777777777765543
No 54
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=22.97 E-value=56 Score=21.31 Aligned_cols=17 Identities=35% Similarity=0.428 Sum_probs=13.0
Q ss_pred HHHHHHHHhCCCCCCCH
Q 034101 64 AHRRVMVANHPDAGGSH 80 (104)
Q Consensus 64 ayr~l~~~~HPDk~gs~ 80 (104)
-..+..++.|||.+-|.
T Consensus 41 YIyKVLKQVhpd~gISs 57 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISS 57 (126)
T ss_dssp HHHHHHHHHCTTCEECH
T ss_pred HHHHHHHHhCCCCCcCH
Confidence 45678889999987654
No 55
>2i8b_A Minor nucleoprotein VP30; VP30 ebola virus protein, transcription, RNA binding, viral; HET: MSE; 2.00A {Zaire ebolavirus}
Probab=22.86 E-value=47 Score=21.95 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHH
Q 034101 59 EKVKEAHRRVMVANHPDAGGSHYL 82 (104)
Q Consensus 59 ~eik~ayr~l~~~~HPDk~gs~~~ 82 (104)
+-|...|.++ |.||||++|.
T Consensus 85 ~~vlevYqrl----HsDKGG~FEA 104 (152)
T 2i8b_A 85 EPVLEVYQRL----HSDKGGSFEA 104 (152)
T ss_dssp HHHHHHHHHH----HTCSSSHHHH
T ss_pred hHHHHHHHHH----hcccCccHHH
Confidence 4567777765 8899998754
No 56
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=22.81 E-value=84 Score=17.56 Aligned_cols=35 Identities=11% Similarity=0.304 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcccc
Q 034101 62 KEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRT 97 (104)
Q Consensus 62 k~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~ 97 (104)
...+|..+..-||+. ...+..+.|.+.|..|.++.
T Consensus 14 ~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~e 48 (79)
T 3u2b_C 14 SQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSD 48 (79)
T ss_dssp HHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHH
Confidence 345556666667765 23456666666666665544
No 57
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=22.55 E-value=96 Score=18.12 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 63 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 63 ~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
+.+|..++..||+. ...+..+.|.+.|..|.+..+
T Consensus 20 ~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK 54 (92)
T 2crj_A 20 NERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEK 54 (92)
T ss_dssp HHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 55666677778875 345666777777777766544
No 58
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=22.33 E-value=85 Score=17.77 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 63 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 63 ~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
+.++..+..-||+. ...+..+.|.+.|..|.++.+
T Consensus 17 ~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK 51 (81)
T 1i11_A 17 KDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEK 51 (81)
T ss_dssp HHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGG
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHH
Confidence 44566666667775 345666777777777766554
No 59
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=22.29 E-value=59 Score=21.11 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=12.9
Q ss_pred HHHHHHHHhCCCCCCCH
Q 034101 64 AHRRVMVANHPDAGGSH 80 (104)
Q Consensus 64 ayr~l~~~~HPDk~gs~ 80 (104)
-..+..++.|||.+-|.
T Consensus 38 YIyKVLKQVhpd~gISs 54 (123)
T 2nqb_D 38 YIYTVLKQVHPDTGISS 54 (123)
T ss_dssp HHHHHHHHHCTTCEECH
T ss_pred HHHHHHHHhCCCCCcCH
Confidence 45678889999986554
No 60
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=22.26 E-value=51 Score=21.85 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=26.3
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHhCCCC
Q 034101 47 ALILGVRESTPTEKVKEAHRRVMVANHPDA 76 (104)
Q Consensus 47 ~~iLgl~~~~~~~eik~ayr~l~~~~HPDk 76 (104)
+..+-|....+.+|++++=..++.+.|||-
T Consensus 35 l~~k~ig~~Its~eL~~~AqeiL~q~hp~Y 64 (138)
T 1qqr_A 35 LKTLAIGDTITSQELLAQAQSILNKNHPGY 64 (138)
T ss_dssp EEEECTTCEEEHHHHHHHHHHHHHHHSTTE
T ss_pred hcccccCcccCHHHHHHHHHHHHHhcCCCc
Confidence 566777788899999999999999999983
No 61
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=21.39 E-value=30 Score=18.85 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=18.7
Q ss_pred CCCCHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q 034101 39 PVMTRREAALILGVRESTPTEKVKEAHRRVMV 70 (104)
Q Consensus 39 ~~m~~~ea~~iLgl~~~~~~~eik~ayr~l~~ 70 (104)
..+|..|--+.||++. ..|+....+...
T Consensus 24 ~g~s~~eIA~~lgis~----~tV~~~~~ra~~ 51 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTR----ERIRQIEAKALR 51 (68)
T ss_dssp SCCCHHHHHHHHTCCH----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCH----HHHHHHHHHHHH
Confidence 5788999999999966 444444444333
No 62
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=21.37 E-value=88 Score=18.23 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 63 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 63 ~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
..+|..++..||+. ...+..+.|.+.|..|.++.+
T Consensus 33 ~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK 67 (90)
T 1wgf_A 33 EEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKK 67 (90)
T ss_dssp HHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 55677777788885 456777788888888876554
No 63
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=21.08 E-value=86 Score=16.72 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.9
Q ss_pred hCCCCCCCHHHHHHHHHHH
Q 034101 50 LGVRESTPTEKVKEAHRRV 68 (104)
Q Consensus 50 Lgl~~~~~~~eik~ayr~l 68 (104)
=||+++++.++|+..|...
T Consensus 5 ~nLp~~~t~~~l~~~F~~~ 23 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGF 23 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHhc
Confidence 3788889999999988875
No 64
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=21.05 E-value=1.4e+02 Score=17.73 Aligned_cols=35 Identities=14% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 63 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 63 ~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
..+|..++.-||+. ...+..+.|.+.|..|.++.+
T Consensus 23 ~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK 57 (99)
T 1k99_A 23 MEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKK 57 (99)
T ss_dssp HHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 44556666677775 456777777788877776654
No 65
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=20.95 E-value=1.1e+02 Score=19.82 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=17.7
Q ss_pred CCCHHHHHHHhCCCCCCCHHHHH
Q 034101 40 VMTRREAALILGVRESTPTEKVK 62 (104)
Q Consensus 40 ~m~~~ea~~iLgl~~~~~~~eik 62 (104)
..|.+|-+++|||+.+.+.+|-.
T Consensus 128 gkt~eeir~~f~I~~d~t~eEe~ 150 (159)
T 2ast_A 128 GKTPEEIRKTFNIKNDFTEEEEA 150 (159)
T ss_dssp SCCHHHHHHHTTCCCCSCTTHHH
T ss_pred CCCHHHHHHHcCCCCCCCHHHHH
Confidence 46889999999999886655443
No 66
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Probab=20.90 E-value=1.7e+02 Score=18.58 Aligned_cols=51 Identities=8% Similarity=0.044 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHh-----CCCCCCCHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHH
Q 034101 38 QPVMTRREAALIL-----GVRESTPTEKVKEAHRRVMVANHPDAGG--SHYLASKINE 88 (104)
Q Consensus 38 ~~~m~~~ea~~iL-----gl~~~~~~~eik~ayr~l~~~~HPDk~g--s~~~~~~i~~ 88 (104)
...++.+|...+| .+....+.+++....+.++....+|..| +.+.|..+-.
T Consensus 125 ~G~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~~~ 182 (207)
T 2ehb_A 125 TGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDIDEWKDFVS 182 (207)
T ss_dssp CSSEEHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHHHcccccCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 4456667766665 2344566677777677777788777766 5566655443
No 67
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=20.80 E-value=60 Score=18.72 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 034101 38 QPVMTRREAALILGVRESTPTEKVKEAHRRV 68 (104)
Q Consensus 38 ~~~m~~~ea~~iLgl~~~~~~~eik~ayr~l 68 (104)
-..++..|.-++||++...=...+.++.++|
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4568899999999998764444444444444
No 68
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.32 E-value=87 Score=18.31 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 63 EAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 63 ~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
+.+|..++.-||+. ...+..+.|.+.|..|.+..|
T Consensus 20 ~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK 54 (92)
T 2cs1_A 20 QDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEK 54 (92)
T ss_dssp HHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHH
Confidence 45566666677775 244566666666666655443
No 69
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=20.25 E-value=97 Score=17.88 Aligned_cols=36 Identities=8% Similarity=0.071 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhccccc
Q 034101 62 KEAHRRVMVANHPDAGGSHYLASKINEAKDIMLRRTK 98 (104)
Q Consensus 62 k~ayr~l~~~~HPDk~gs~~~~~~i~~Ay~~L~~~~k 98 (104)
...+|..+..-||+. ...+..+.|.+.|..|.++.|
T Consensus 29 ~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK 64 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEER 64 (87)
T ss_dssp HHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHH
Confidence 355666777788885 455677778888888876554
Done!