BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034103
(103 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HO8|A Chain A, Crystal Structure Of The Regulatory Subunit H Of The
V-Type Atpase Of Saccharomyces Cerevisiae
Length = 480
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 2 HKDPLFWRDNITNFEENDFQILRVLLTILDT---SSDPRA------LAVACFDLSQFIQY 52
H D FW DNI F++++++I R L+ +L + D A + VA D++ ++
Sbjct: 376 HVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL 435
Query: 53 HPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92
P ++ K +M+L+NH ++ V AL Q +
Sbjct: 436 LPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAII 475
>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A
Nucleoplasmin Nls Peptide
Length = 424
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92
S D L AC+ +S V D++ +R+++L++HE+T V AL + +
Sbjct: 182 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 241
Query: 93 LG 94
G
Sbjct: 242 TG 243
>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae
pdb|1BK5|B Chain B, Karyopherin Alpha From Saccharomyces Cerevisiae
Length = 422
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92
S D L AC+ +S V D++ +R+++L++HE+T V AL + +
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 93 LG 94
G
Sbjct: 240 TG 241
>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
pdb|1EE4|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
A Complex With A C-Myc Nls Peptide
Length = 423
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92
S D L AC+ +S V D++ +R+++L++HE+T V AL + +
Sbjct: 182 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 241
Query: 93 LG 94
G
Sbjct: 242 TG 243
>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
pdb|1BK6|B Chain B, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls
Length = 422
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92
S D L AC+ +S V D++ +R+++L++HE+T V AL + +
Sbjct: 180 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 239
Query: 93 LG 94
G
Sbjct: 240 TG 241
>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex
pdb|2C1T|B Chain B, Structure Of The Kap60p:nup2 Complex
Length = 454
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92
S D L AC+ +S V D++ +R+++L++HE+T V AL + +
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 93 LG 94
G
Sbjct: 241 TG 242
>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
pdb|1UN0|B Chain B, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In
Complex With A Nup2p N-Terminal Fragment
Length = 443
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92
S D L AC+ +S V D++ +R+++L++HE+T V AL + +
Sbjct: 181 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 240
Query: 93 LG 94
G
Sbjct: 241 TG 242
>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 530
Score = 29.3 bits (64), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92
S D L AC+ +S V D++ +R+++L++HE+T V AL + +
Sbjct: 268 SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV 327
Query: 93 LG 94
G
Sbjct: 328 TG 329
>pdb|3U1B|A Chain A, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3U1B|B Chain B, Crystal Structure Of The S238r Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 3 KDPLFWRDNITNFEE 17
K PLFW D N+EE
Sbjct: 171 KQPLFWSDEFINWEE 185
>pdb|3T5M|A Chain A, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
pdb|3T5M|B Chain B, Crystal Structure Of The S112a Mutant Of Mycrocine
Immunity Protein (Mccf) With Amp
Length = 336
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 3 KDPLFWRDNITNFEE 17
K PLFW D N+EE
Sbjct: 171 KQPLFWSDEFINWEE 185
>pdb|3GJZ|A Chain A, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
pdb|3GJZ|B Chain B, Crystal Structure Of Microcin Immunity Protein Mccf From
Bacillus Anthracis Str. Ames
Length = 336
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 3 KDPLFWRDNITNFEE 17
K PLFW D N+EE
Sbjct: 171 KQPLFWSDEFINWEE 185
>pdb|3TRJ|A Chain A, Structure Of A Phosphoheptose Isomerase From Francisella
Tularensis
pdb|3TRJ|B Chain B, Structure Of A Phosphoheptose Isomerase From Francisella
Tularensis
pdb|3TRJ|C Chain C, Structure Of A Phosphoheptose Isomerase From Francisella
Tularensis
pdb|3TRJ|D Chain D, Structure Of A Phosphoheptose Isomerase From Francisella
Tularensis
Length = 201
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 9 RDNITNFEENDFQILRVLLTILD 31
DNI N +EN F I+ L I+D
Sbjct: 170 SDNIANIQENHFLIVHCLCDIID 192
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,664,507
Number of Sequences: 62578
Number of extensions: 80479
Number of successful extensions: 382
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 370
Number of HSP's gapped (non-prelim): 12
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)