Query 034103
Match_columns 103
No_of_seqs 109 out of 179
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 09:48:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034103.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034103hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11698 V-ATPase_H_C: V-ATPas 100.0 1.5E-51 3.3E-56 291.7 4.9 95 1-95 23-117 (119)
2 cd00256 VATPase_H VATPase_H, r 100.0 2E-46 4.3E-51 309.5 10.1 95 1-95 333-427 (429)
3 KOG2759 Vacuolar H+-ATPase V1 100.0 7.7E-45 1.7E-49 299.5 9.2 95 1-95 346-440 (442)
4 COG5231 VMA13 Vacuolar H+-ATPa 100.0 7.9E-32 1.7E-36 219.2 8.5 94 1-94 336-429 (432)
5 PF04826 Arm_2: Armadillo-like 97.4 0.00041 8.9E-09 54.3 6.0 73 20-93 11-83 (254)
6 cd00020 ARM Armadillo/beta-cat 97.2 0.00094 2E-08 43.0 4.7 71 21-92 49-119 (120)
7 cd00020 ARM Armadillo/beta-cat 97.1 0.001 2.2E-08 42.9 4.7 73 22-95 8-80 (120)
8 PF00514 Arm: Armadillo/beta-c 96.9 0.0031 6.7E-08 35.7 4.6 38 54-91 2-39 (41)
9 PF02985 HEAT: HEAT repeat; I 96.7 0.0032 6.9E-08 34.1 3.6 26 67-92 3-28 (31)
10 PF13646 HEAT_2: HEAT repeats; 96.3 0.0021 4.5E-08 40.3 1.6 58 23-91 1-58 (88)
11 KOG2160 Armadillo/beta-catenin 95.9 0.023 4.9E-07 46.9 5.9 86 10-98 115-201 (342)
12 smart00185 ARM Armadillo/beta- 95.8 0.031 6.8E-07 30.3 4.6 38 54-91 2-39 (41)
13 PF12717 Cnd1: non-SMC mitotic 94.1 0.071 1.5E-06 38.8 3.7 45 46-95 12-56 (178)
14 PF07539 DRIM: Down-regulated 94.0 0.12 2.5E-06 37.4 4.7 41 52-92 5-45 (141)
15 COG5064 SRP1 Karyopherin (impo 93.5 0.044 9.6E-07 46.5 1.9 74 21-95 243-316 (526)
16 PF10508 Proteasom_PSMB: Prote 93.4 0.18 4E-06 42.5 5.5 74 25-99 81-154 (503)
17 KOG2160 Armadillo/beta-catenin 92.7 0.34 7.4E-06 40.1 5.9 74 22-95 167-242 (342)
18 KOG0166 Karyopherin (importin) 92.6 0.097 2.1E-06 45.3 2.8 77 20-97 236-312 (514)
19 PF01602 Adaptin_N: Adaptin N 92.3 0.32 6.9E-06 39.5 5.2 71 17-94 71-144 (526)
20 PF09450 DUF2019: Domain of un 92.1 0.12 2.6E-06 36.3 2.3 48 38-85 16-68 (106)
21 PF13513 HEAT_EZ: HEAT-like re 92.1 0.18 3.8E-06 29.6 2.7 27 65-91 29-55 (55)
22 KOG1048 Neural adherens juncti 91.9 0.36 7.9E-06 43.4 5.5 68 25-93 237-304 (717)
23 PF01602 Adaptin_N: Adaptin N 87.1 1.5 3.3E-05 35.6 5.3 72 19-96 412-486 (526)
24 PF05804 KAP: Kinesin-associat 86.2 1.5 3.3E-05 39.3 5.2 80 21-100 576-657 (708)
25 PLN03200 cellulose synthase-in 85.5 1.3 2.9E-05 44.0 4.8 74 21-95 404-477 (2102)
26 PF12755 Vac14_Fab1_bd: Vacuol 84.6 1.3 2.8E-05 29.9 3.2 29 66-94 29-57 (97)
27 PRK09687 putative lyase; Provi 84.3 1.4 2.9E-05 34.7 3.6 71 21-91 90-186 (280)
28 PF08167 RIX1: rRNA processing 84.3 2.6 5.6E-05 30.5 4.9 82 12-95 58-145 (165)
29 PLN03200 cellulose synthase-in 83.3 2.8 6.1E-05 41.9 5.9 81 19-99 1773-1856(2102)
30 cd00183 TFIIS_I N-terminal dom 82.2 10 0.00022 24.2 6.6 69 23-92 4-72 (76)
31 PF12348 CLASP_N: CLASP N term 81.8 2.5 5.3E-05 30.9 4.0 64 32-95 141-208 (228)
32 PF13646 HEAT_2: HEAT repeats; 80.1 2.3 5E-05 26.2 2.9 60 18-89 28-88 (88)
33 KOG4224 Armadillo repeat prote 79.9 3.1 6.7E-05 35.9 4.3 83 14-98 196-285 (550)
34 PF11935 DUF3453: Domain of un 79.5 6.9 0.00015 30.1 5.9 69 16-93 3-72 (239)
35 PF10274 ParcG: Parkin co-regu 78.8 4.2 9.1E-05 30.9 4.4 86 7-96 26-112 (183)
36 PF10508 Proteasom_PSMB: Prote 78.2 5.7 0.00012 33.6 5.5 76 18-95 116-191 (503)
37 TIGR00277 HDIG uncharacterized 76.8 0.96 2.1E-05 27.2 0.4 16 35-50 28-43 (80)
38 PF13251 DUF4042: Domain of un 76.0 5.3 0.00012 30.0 4.3 73 21-95 101-176 (182)
39 KOG1062 Vesicle coat complex A 75.9 7.6 0.00016 35.8 5.9 74 13-93 95-171 (866)
40 cd03561 VHS VHS domain family; 75.2 15 0.00032 25.6 6.1 69 21-92 37-111 (133)
41 PF02084 Bindin: Bindin; Inte 74.6 11 0.00023 30.0 5.8 75 19-95 102-182 (238)
42 PF14664 RICTOR_N: Rapamycin-i 74.2 9 0.0002 31.6 5.5 57 43-99 4-60 (371)
43 PF00173 Cyt-b5: Cytochrome b5 74.0 0.62 1.3E-05 28.8 -1.0 35 35-69 14-50 (76)
44 PF00790 VHS: VHS domain; Int 73.5 19 0.00042 25.1 6.4 70 20-92 41-117 (140)
45 PF12755 Vac14_Fab1_bd: Vacuol 73.0 16 0.00036 24.5 5.7 64 20-86 26-90 (97)
46 PRK09687 putative lyase; Provi 72.9 3.9 8.5E-05 32.1 3.0 63 20-92 158-220 (280)
47 PRK13800 putative oxidoreducta 72.8 5.8 0.00013 35.9 4.4 59 21-91 621-679 (897)
48 KOG4199 Uncharacterized conser 72.8 11 0.00024 32.2 5.7 83 10-95 232-318 (461)
49 PF03778 DUF321: Protein of un 69.3 0.95 2.1E-05 23.2 -0.8 8 6-13 2-9 (20)
50 PF03224 V-ATPase_H_N: V-ATPas 67.9 7.2 0.00016 30.6 3.5 80 16-95 50-136 (312)
51 cd00197 VHS_ENTH_ANTH VHS, ENT 67.5 25 0.00055 23.4 5.7 69 21-92 37-114 (115)
52 smart00509 TFS2N Domain in the 67.5 30 0.00065 22.2 6.5 51 42-92 20-70 (75)
53 PF14726 RTTN_N: Rotatin, an a 66.8 35 0.00076 23.3 6.3 65 18-84 27-91 (98)
54 PF09759 Atx10homo_assoc: Spin 66.5 24 0.00053 24.3 5.5 46 50-95 14-61 (102)
55 cd03569 VHS_Hrs_Vps27p VHS dom 66.3 32 0.0007 24.5 6.4 70 20-92 40-113 (142)
56 PF12719 Cnd3: Nuclear condens 65.6 13 0.00028 29.0 4.5 73 21-96 64-146 (298)
57 PRK13800 putative oxidoreducta 65.3 19 0.00041 32.6 6.1 27 67-93 778-804 (897)
58 KOG0537 Cytochrome b5 [Energy 65.3 3.6 7.9E-05 29.2 1.3 36 33-68 17-54 (124)
59 PF08045 CDC14: Cell division 63.2 14 0.0003 29.5 4.3 56 40-95 109-165 (257)
60 KOG4500 Rho/Rac GTPase guanine 62.9 16 0.00034 32.2 4.9 74 19-94 313-391 (604)
61 KOG1517 Guanine nucleotide bin 62.4 13 0.00027 35.8 4.4 76 19-94 597-672 (1387)
62 cd03568 VHS_STAM VHS domain fa 61.3 44 0.00096 23.9 6.3 69 21-92 37-109 (144)
63 PF10363 DUF2435: Protein of u 59.9 40 0.00087 22.5 5.5 69 22-93 4-72 (92)
64 cd03567 VHS_GGA VHS domain fam 58.8 41 0.00089 24.1 5.8 69 21-92 38-115 (139)
65 PTZ00429 beta-adaptin; Provisi 57.9 20 0.00043 32.5 4.8 57 34-93 152-208 (746)
66 PF03224 V-ATPase_H_N: V-ATPas 57.8 13 0.00028 29.1 3.3 79 18-98 102-184 (312)
67 PF08045 CDC14: Cell division 57.2 42 0.00091 26.7 6.1 75 20-95 132-209 (257)
68 cd00197 VHS_ENTH_ANTH VHS, ENT 56.6 26 0.00057 23.3 4.3 47 43-95 21-68 (115)
69 PF05918 API5: Apoptosis inhib 56.5 14 0.0003 32.5 3.5 73 20-99 22-95 (556)
70 PRK00393 ribA GTP cyclohydrola 56.0 3.9 8.4E-05 30.8 0.1 33 50-86 127-159 (197)
71 KOG1059 Vesicle coat complex A 55.9 36 0.00078 31.5 6.0 62 25-92 303-364 (877)
72 COG5274 CYB5 Cytochrome b invo 55.4 2.4 5.1E-05 31.9 -1.2 36 33-69 63-100 (164)
73 smart00288 VHS Domain present 55.3 24 0.00053 24.6 4.1 23 73-95 46-68 (133)
74 KOG4232 Delta 6-fatty acid des 54.9 8.9 0.00019 32.8 2.0 49 35-83 22-72 (430)
75 PF04405 ScdA_N: Domain of Unk 53.3 12 0.00027 23.0 2.0 44 46-89 5-56 (56)
76 PF08984 DUF1858: Domain of un 52.2 16 0.00034 22.2 2.4 19 46-64 7-25 (59)
77 KOG1060 Vesicle coat complex A 50.4 21 0.00047 33.2 3.8 72 18-95 463-535 (968)
78 PF05047 L51_S25_CI-B8: Mitoch 50.0 7.6 0.00017 22.7 0.7 17 6-22 3-19 (52)
79 TIGR02511 type_III_tyeA type I 49.5 71 0.0015 20.8 5.9 67 21-93 5-76 (79)
80 PF13066 DUF3929: Protein of u 49.2 6.2 0.00013 25.2 0.2 31 18-48 21-58 (65)
81 cd03567 VHS_GGA VHS domain fam 48.8 52 0.0011 23.5 5.0 26 69-94 43-68 (139)
82 COG5158 SEC1 Proteins involved 48.8 22 0.00049 31.5 3.6 59 3-62 274-335 (582)
83 smart00288 VHS Domain present 48.5 90 0.002 21.7 6.1 69 21-92 37-110 (133)
84 PF12348 CLASP_N: CLASP N term 48.2 49 0.0011 24.0 4.9 53 38-95 109-162 (228)
85 KOG2757 Mannose-6-phosphate is 47.2 35 0.00077 29.1 4.4 51 44-95 147-197 (411)
86 PTZ00429 beta-adaptin; Provisi 47.0 37 0.00079 30.8 4.7 56 35-96 455-510 (746)
87 KOG0166 Karyopherin (importin) 46.3 30 0.00066 30.3 4.0 76 19-94 319-394 (514)
88 TIGR02270 conserved hypothetic 46.2 43 0.00093 28.1 4.8 25 67-91 150-174 (410)
89 KOG4231 Intracellular membrane 45.5 60 0.0013 29.3 5.7 61 35-95 292-359 (763)
90 cd07361 MEMO_like Memo (mediat 45.4 19 0.00041 27.7 2.4 55 19-80 152-207 (266)
91 KOG1062 Vesicle coat complex A 45.3 77 0.0017 29.6 6.5 65 23-93 315-379 (866)
92 smart00802 UME Domain in UVSB 44.7 47 0.001 22.9 4.1 72 16-92 6-82 (107)
93 PF10952 DUF2753: Protein of u 44.3 43 0.00093 24.7 3.9 46 38-83 48-121 (140)
94 TIGR00505 ribA GTP cyclohydrol 44.1 6.6 0.00014 29.3 -0.3 33 50-86 124-156 (191)
95 PF05536 Neurochondrin: Neuroc 44.0 58 0.0013 28.2 5.3 71 23-95 100-170 (543)
96 PLN03198 delta6-acyl-lipid des 43.9 12 0.00025 32.5 1.1 24 42-66 127-150 (526)
97 PF12460 MMS19_C: RNAPII trans 43.5 88 0.0019 25.6 6.1 71 22-95 324-396 (415)
98 KOG1222 Kinesin associated pro 43.1 58 0.0013 29.4 5.2 78 21-98 590-669 (791)
99 cd05024 S-100A10 S-100A10: A s 42.9 18 0.0004 24.5 1.8 31 17-47 44-85 (91)
100 PF10363 DUF2435: Protein of u 42.8 32 0.00068 23.0 2.9 30 67-96 6-35 (92)
101 cd07359 PCA_45_Doxase_B_like S 42.5 17 0.00037 28.0 1.7 56 19-77 156-212 (271)
102 PF08711 Med26: TFIIS helical 42.4 69 0.0015 18.6 5.2 42 51-92 7-49 (53)
103 KOG1059 Vesicle coat complex A 42.2 48 0.0011 30.7 4.7 66 26-101 114-179 (877)
104 cd03565 VHS_Tom1 VHS domain fa 42.0 1.1E+02 0.0024 21.7 5.8 70 21-92 38-114 (141)
105 PF11841 DUF3361: Domain of un 42.0 56 0.0012 24.4 4.4 73 21-93 58-131 (160)
106 COG5064 SRP1 Karyopherin (impo 41.7 15 0.00032 31.6 1.4 69 22-91 286-354 (526)
107 KOG2090 Metalloendopeptidase f 41.0 34 0.00074 31.0 3.5 44 44-87 98-143 (704)
108 KOG0499 Cyclic nucleotide-gate 40.9 27 0.00058 31.9 2.9 23 40-62 628-650 (815)
109 PF00925 GTP_cyclohydro2: GTP 40.8 12 0.00027 27.3 0.7 35 49-87 124-158 (169)
110 PF05804 KAP: Kinesin-associat 40.6 53 0.0012 29.7 4.7 67 20-91 289-358 (708)
111 cd03561 VHS VHS domain family; 40.4 39 0.00085 23.4 3.2 27 69-95 42-68 (133)
112 PF12002 MgsA_C: MgsA AAA+ ATP 40.3 1.1E+02 0.0024 22.9 5.8 82 7-94 9-95 (168)
113 KOG2374 Uncharacterized conser 40.3 80 0.0017 28.3 5.6 68 23-95 8-75 (661)
114 PF00790 VHS: VHS domain; Int 39.4 1.1E+02 0.0024 21.3 5.4 45 45-95 28-73 (140)
115 COG2912 Uncharacterized conser 38.7 53 0.0011 26.5 4.0 52 7-58 182-250 (269)
116 KOG1824 TATA-binding protein-i 38.5 47 0.001 31.8 4.1 81 17-101 813-896 (1233)
117 TIGR02270 conserved hypothetic 38.4 48 0.001 27.8 3.9 27 65-91 179-205 (410)
118 PF09984 DUF2222: Uncharacteri 38.2 27 0.00058 25.5 2.1 33 15-47 30-62 (146)
119 KOG2171 Karyopherin (importin) 37.9 46 0.00099 31.7 4.0 28 65-92 390-417 (1075)
120 PRK13342 recombination factor 37.8 88 0.0019 25.6 5.3 70 20-95 264-338 (413)
121 PF12717 Cnd1: non-SMC mitotic 35.9 77 0.0017 22.8 4.3 65 23-94 27-93 (178)
122 PF12074 DUF3554: Domain of un 35.7 30 0.00065 27.3 2.2 29 67-95 207-237 (339)
123 PF01465 GRIP: GRIP domain; I 35.4 74 0.0016 18.7 3.4 28 65-92 8-35 (46)
124 PF06012 DUF908: Domain of Unk 34.2 57 0.0012 26.1 3.6 56 10-65 254-311 (329)
125 PF04826 Arm_2: Armadillo-like 33.9 24 0.00052 27.7 1.4 19 66-84 235-253 (254)
126 PRK09311 bifunctional 3,4-dihy 33.7 16 0.00034 30.7 0.3 34 50-87 332-365 (402)
127 KOG0536 Flavohemoprotein b5+b5 33.2 16 0.00035 27.0 0.3 52 34-86 81-134 (145)
128 cd03568 VHS_STAM VHS domain fa 33.0 1.1E+02 0.0023 22.0 4.5 25 71-95 44-68 (144)
129 KOG4535 HEAT and armadillo rep 32.9 84 0.0018 28.3 4.6 75 21-95 106-181 (728)
130 PRK09318 bifunctional 3,4-dihy 32.9 17 0.00038 30.5 0.5 34 50-87 313-346 (387)
131 TIGR03652 FeS_repair_RIC iron- 32.9 31 0.00068 25.9 1.8 19 46-64 1-19 (216)
132 cd00884 beta_CA_cladeB Carboni 32.6 45 0.00098 25.0 2.6 33 15-47 5-37 (190)
133 PF10231 DUF2315: Uncharacteri 32.5 56 0.0012 23.4 3.0 46 5-53 44-89 (126)
134 PRK00782 hypothetical protein; 32.0 50 0.0011 25.7 2.9 51 21-79 155-205 (267)
135 KOG1517 Guanine nucleotide bin 31.8 67 0.0015 31.2 4.1 59 36-94 571-630 (1387)
136 KOG4576 Sulfite oxidase, heme- 31.7 17 0.00036 27.3 0.1 27 38-64 100-126 (167)
137 smart00471 HDc Metal dependent 31.5 22 0.00048 21.8 0.7 14 37-50 31-44 (124)
138 PF10501 Ribosomal_L50: Riboso 31.4 51 0.0011 22.5 2.6 25 68-92 52-76 (112)
139 PF01966 HD: HD domain; Inter 31.3 9.2 0.0002 24.1 -1.1 14 37-50 28-41 (122)
140 COG5096 Vesicle coat complex, 31.3 51 0.0011 30.2 3.1 24 69-92 132-155 (757)
141 PF12719 Cnd3: Nuclear condens 30.3 74 0.0016 24.7 3.6 29 67-95 30-58 (298)
142 KOG1824 TATA-binding protein-i 30.2 76 0.0016 30.5 4.1 85 10-96 954-1039(1233)
143 PF05004 IFRD: Interferon-rela 30.1 1.2E+02 0.0026 24.2 4.8 55 35-91 199-255 (309)
144 cd03572 ENTH_epsin_related ENT 30.0 1.9E+02 0.0042 20.4 5.4 50 40-94 19-68 (122)
145 PF06025 DUF913: Domain of Unk 29.8 72 0.0016 26.4 3.6 56 19-74 104-161 (379)
146 KOG3029 Glutathione S-transfer 29.7 22 0.00048 29.6 0.6 38 44-84 166-210 (370)
147 KOG1293 Proteins containing ar 29.3 1.8E+02 0.0038 26.6 6.0 77 22-100 462-541 (678)
148 PF14668 RICTOR_V: Rapamycin-i 29.1 41 0.00088 21.8 1.6 45 19-64 26-70 (73)
149 PLN02831 Bifunctional GTP cycl 29.0 20 0.00044 30.7 0.2 34 50-87 366-399 (450)
150 PF12689 Acid_PPase: Acid Phos 29.0 11 0.00024 27.9 -1.2 44 46-89 40-84 (169)
151 PF08064 UME: UME (NUC010) dom 28.3 1.9E+02 0.0041 19.4 5.5 71 17-92 7-82 (107)
152 PF10521 DUF2454: Protein of u 27.9 70 0.0015 24.9 3.1 55 39-95 93-150 (282)
153 PF10193 Telomere_reg-2: Telom 27.9 1.3E+02 0.0028 20.6 4.1 64 23-88 5-77 (114)
154 COG0288 CynT Carbonic anhydras 27.5 48 0.001 25.3 2.0 36 10-45 9-45 (207)
155 cd07320 Extradiol_Dioxygenase_ 27.4 44 0.00096 25.1 1.8 58 19-79 143-205 (260)
156 cd00256 VATPase_H VATPase_H, r 27.3 2.4E+02 0.0053 24.0 6.4 80 15-94 47-131 (429)
157 KOG0211 Protein phosphatase 2A 27.1 1.2E+02 0.0026 27.8 4.8 42 48-92 583-624 (759)
158 KOG4224 Armadillo repeat prote 27.1 2.3E+02 0.0049 24.9 6.1 74 22-95 334-407 (550)
159 PF02083 Urotensin_II: Urotens 27.0 26 0.00057 15.7 0.3 7 3-9 3-9 (12)
160 KOG0414 Chromosome condensatio 27.0 1.3E+02 0.0029 29.2 5.1 58 42-101 367-436 (1251)
161 KOG0414 Chromosome condensatio 26.9 1.6E+02 0.0034 28.7 5.6 65 23-95 962-1029(1251)
162 KOG4413 26S proteasome regulat 26.4 1.5E+02 0.0033 25.6 4.9 62 34-95 94-159 (524)
163 PF10165 Ric8: Guanine nucleot 26.4 95 0.0021 26.0 3.8 26 73-98 41-66 (446)
164 PF05997 Nop52: Nucleolar prot 26.1 81 0.0018 24.0 3.1 27 69-95 5-31 (217)
165 PF13251 DUF4042: Domain of un 26.0 68 0.0015 24.1 2.6 60 33-100 16-77 (182)
166 KOG1293 Proteins containing ar 25.9 2.2E+02 0.0048 26.0 6.0 76 19-95 417-492 (678)
167 PF08216 CTNNBL: Catenin-beta- 25.7 65 0.0014 22.6 2.3 24 60-83 83-106 (108)
168 PF06135 DUF965: Bacterial pro 25.6 1E+02 0.0022 20.7 3.1 44 14-69 27-70 (79)
169 PF13001 Ecm29: Proteasome sta 25.6 1.5E+02 0.0033 25.2 4.9 76 17-93 410-488 (501)
170 KOG0869 CCAAT-binding factor, 25.5 74 0.0016 24.1 2.7 34 67-102 39-72 (168)
171 cd03569 VHS_Hrs_Vps27p VHS dom 25.5 1.6E+02 0.0035 20.9 4.4 24 71-94 48-71 (142)
172 KOG1087 Cytosolic sorting prot 25.4 2.3E+02 0.005 24.6 5.9 69 20-91 37-110 (470)
173 KOG2171 Karyopherin (importin) 25.1 1.3E+02 0.0027 28.9 4.6 68 22-91 432-502 (1075)
174 PTZ00475 RESA-like protein; Pr 24.9 2E+02 0.0044 23.4 5.2 70 8-95 210-280 (282)
175 PF06782 UPF0236: Uncharacteri 24.8 1.1E+02 0.0024 25.9 3.9 54 35-89 255-312 (470)
176 COG3189 Uncharacterized conser 24.4 1.5E+02 0.0032 21.3 3.9 44 2-47 56-103 (117)
177 PF09385 HisK_N: Histidine kin 24.4 81 0.0018 23.0 2.6 47 14-60 38-95 (133)
178 COG5385 Uncharacterized protei 24.4 36 0.00077 26.4 0.8 42 40-81 20-63 (214)
179 PRK14019 bifunctional 3,4-dihy 24.2 28 0.0006 28.9 0.2 33 50-87 321-353 (367)
180 PF12830 Nipped-B_C: Sister ch 23.4 1.2E+02 0.0026 22.2 3.5 26 67-92 11-36 (187)
181 PF13512 TPR_18: Tetratricopep 23.4 39 0.00083 24.7 0.8 31 30-60 106-136 (142)
182 PRK07198 hypothetical protein; 23.1 56 0.0012 28.0 1.8 35 50-87 331-365 (418)
183 cd08784 Death_DRs Death Domain 23.1 1.7E+02 0.0038 18.6 3.8 45 49-93 5-51 (79)
184 COG1413 FOG: HEAT repeat [Ener 23.0 95 0.0021 23.9 3.0 65 18-92 177-241 (335)
185 PF09093 Lyase_catalyt: Lyase, 23.0 1.4E+02 0.003 25.2 4.1 52 44-95 190-244 (373)
186 KOG2956 CLIP-associating prote 22.8 2.3E+02 0.005 25.1 5.4 78 16-95 278-361 (516)
187 PRK13276 cell wall biosynthesi 22.1 74 0.0016 24.8 2.2 19 46-64 8-26 (224)
188 TIGR03276 Phn-HD phosphonate d 22.1 27 0.00059 26.4 -0.2 40 34-74 43-96 (179)
189 PF08759 DUF1792: Domain of un 22.0 89 0.0019 24.6 2.6 31 14-46 18-48 (225)
190 PF11865 DUF3385: Domain of un 22.0 97 0.0021 22.3 2.7 24 68-91 14-38 (160)
191 PF12333 Ipi1_N: Rix1 complex 22.0 81 0.0018 21.1 2.1 25 71-95 18-42 (102)
192 PLN00416 carbonate dehydratase 22.0 74 0.0016 25.2 2.2 37 10-46 54-90 (258)
193 cd00641 GTP_cyclohydro2 GTP cy 21.9 31 0.00068 25.6 0.1 34 50-87 126-159 (193)
194 KOG2759 Vacuolar H+-ATPase V1 21.8 1.3E+02 0.0029 26.0 3.8 74 19-92 153-228 (442)
195 PF10815 ComZ: ComZ; InterPro 21.5 51 0.0011 20.8 1.0 17 50-66 11-27 (56)
196 PF09409 PUB: PUB domain; Int 21.5 1.9E+02 0.0041 18.4 3.7 47 22-68 13-61 (87)
197 KOG4083 Head-elevated expressi 21.5 88 0.0019 24.2 2.5 28 3-30 101-128 (192)
198 smart00567 EZ_HEAT E-Z type HE 21.5 76 0.0017 16.1 1.6 13 79-91 2-14 (30)
199 COG5096 Vesicle coat complex, 21.4 1.4E+02 0.003 27.5 4.1 44 49-92 151-194 (757)
200 PF12765 Cohesin_HEAT: HEAT re 21.2 90 0.002 17.8 1.9 23 65-87 19-41 (42)
201 cd00870 PI3Ka_III Phosphoinosi 20.9 1.5E+02 0.0033 21.7 3.6 29 66-95 78-108 (166)
202 PF13879 KIAA1430: KIAA1430 ho 20.9 1E+02 0.0022 19.7 2.4 29 4-32 30-58 (98)
203 PF15511 CENP-T: Centromere ki 20.8 28 0.0006 29.1 -0.4 20 40-61 392-411 (414)
204 PLN02252 nitrate reductase [NA 20.7 48 0.001 30.6 1.0 34 34-67 531-566 (888)
205 COG1413 FOG: HEAT repeat [Ener 20.6 3.8E+02 0.0082 20.6 5.9 33 59-91 97-133 (335)
206 KOG2115 Vacuolar sorting prote 20.6 2.5E+02 0.0053 26.7 5.4 85 3-101 266-355 (951)
207 COG4818 Predicted membrane pro 20.2 64 0.0014 22.7 1.3 28 67-94 18-45 (105)
208 PF01875 Memo: Memo-like prote 20.2 1E+02 0.0023 24.0 2.7 63 21-86 158-224 (276)
209 cd08313 Death_TNFR1 Death doma 20.1 2E+02 0.0043 18.8 3.6 46 48-93 4-51 (80)
No 1
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=100.00 E-value=1.5e-51 Score=291.74 Aligned_cols=95 Identities=51% Similarity=0.903 Sum_probs=89.9
Q ss_pred CCCChHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHh
Q 034103 1 MHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEV 80 (103)
Q Consensus 1 ~H~se~FW~ENa~kf~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eV 80 (103)
+|+||+||+||+.||+|++|+++|+|+++|++|+||+++||||||||+|||+||+||.+++++|+|++||+||+|+|++|
T Consensus 23 ~H~se~FW~ENa~kf~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eV 102 (119)
T PF11698_consen 23 VHKSEKFWRENADKFEENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEV 102 (119)
T ss_dssp GGG-HHHHHHHSGGGSSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHH
T ss_pred CCCCccHHHHHHHHHHHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHH
Confidence 69999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcch
Q 034103 81 TKSALLCIQRLFLGA 95 (103)
Q Consensus 81 r~eAL~avQklm~~~ 95 (103)
|||||+|+|++|+++
T Consensus 103 r~eAL~avQklm~~~ 117 (119)
T PF11698_consen 103 RYEALLAVQKLMVNN 117 (119)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999998
No 2
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=100.00 E-value=2e-46 Score=309.52 Aligned_cols=95 Identities=40% Similarity=0.809 Sum_probs=94.1
Q ss_pred CCCChHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHh
Q 034103 1 MHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEV 80 (103)
Q Consensus 1 ~H~se~FW~ENa~kf~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eV 80 (103)
+|+||+||+||++||+||||+++|+|++||++|+||+++||||||||||||+||+||.+++++|+|++||+||+|+||+|
T Consensus 333 ~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~V 412 (429)
T cd00256 333 VHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNV 412 (429)
T ss_pred CCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcch
Q 034103 81 TKSALLCIQRLFLGA 95 (103)
Q Consensus 81 r~eAL~avQklm~~~ 95 (103)
|||||+|+||+|+|+
T Consensus 413 r~eAL~avQklm~~~ 427 (429)
T cd00256 413 RYEALLAVQKLMVHN 427 (429)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999998
No 3
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=100.00 E-value=7.7e-45 Score=299.47 Aligned_cols=95 Identities=41% Similarity=0.826 Sum_probs=94.2
Q ss_pred CCCChHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHh
Q 034103 1 MHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEV 80 (103)
Q Consensus 1 ~H~se~FW~ENa~kf~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eV 80 (103)
+|+||+||+|||.+|+||||+++|+|+++|++|+||.+||||||||||||||||+||.+++++|||++||+||+|+||+|
T Consensus 346 ~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~V 425 (442)
T KOG2759|consen 346 VHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEV 425 (442)
T ss_pred cccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcch
Q 034103 81 TKSALLCIQRLFLGA 95 (103)
Q Consensus 81 r~eAL~avQklm~~~ 95 (103)
||+||+|+|++|+++
T Consensus 426 ry~ALlavQ~lm~~~ 440 (442)
T KOG2759|consen 426 RYHALLAVQKLMVHN 440 (442)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999999998
No 4
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=99.97 E-value=7.9e-32 Score=219.19 Aligned_cols=94 Identities=26% Similarity=0.496 Sum_probs=90.3
Q ss_pred CCCChHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHh
Q 034103 1 MHKDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEV 80 (103)
Q Consensus 1 ~H~se~FW~ENa~kf~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eV 80 (103)
+|++++||..|+++|+++||+++|+|+++|+...+.+++||||||||++||.+|+|+.++.+.|+|++||+||+|+||+|
T Consensus 336 ~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~V 415 (432)
T COG5231 336 YHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDV 415 (432)
T ss_pred cccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchh
Confidence 59999999999999999999999999999976667779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 034103 81 TKSALLCIQRLFLG 94 (103)
Q Consensus 81 r~eAL~avQklm~~ 94 (103)
|||||+|+|.+|+.
T Consensus 416 kfeAl~a~q~~i~~ 429 (432)
T COG5231 416 KFEALQALQTCISS 429 (432)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999999999964
No 5
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.41 E-value=0.00041 Score=54.30 Aligned_cols=73 Identities=27% Similarity=0.334 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
-+-++.|+.+|+.++||.+...|+.=+|.. ..||..+.++.++||-..|-.++..++|.||-.||.|+.-+=.
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~-aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~ 83 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNS-AAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV 83 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhh-ccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC
Confidence 356799999999899999999999999995 7899999999999999999999999999999999999875533
No 6
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.16 E-value=0.00094 Score=43.02 Aligned_cols=71 Identities=20% Similarity=0.305 Sum_probs=63.1
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
..+..|.++|. ++|+.+..-||.-|+.++...|..+.++.+.|+-..+.++|..++.+++.+|+.++.-+.
T Consensus 49 ~~i~~l~~~l~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 49 GGLPALVQLLK-SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred CChHHHHHHHh-CCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 56888889985 468888899999999999999888898888899999999999999999999999987653
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.14 E-value=0.001 Score=42.89 Aligned_cols=73 Identities=26% Similarity=0.328 Sum_probs=63.1
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
++..|+++|. +.++.+...|+.=|+.+....|.++..+-+.|+-..+.++|+++|++|+..|+.|+..+..+.
T Consensus 8 ~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 8 GLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred ChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 6788999996 445667777777799999998988888888899999999999999999999999999987655
No 8
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=96.87 E-value=0.0031 Score=35.68 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=34.5
Q ss_pred cchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 54 PAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 54 P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
|+.+..+-+.|+=..+.+||.++|++|+.+|+-|+.-|
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999998765
No 9
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.69 E-value=0.0032 Score=34.06 Aligned_cols=26 Identities=23% Similarity=0.459 Sum_probs=22.6
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 67 ERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
..+++++++++++||+.|..|++.+.
T Consensus 3 p~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 3 PILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 35789999999999999999999886
No 10
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.35 E-value=0.0021 Score=40.34 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=44.5
Q ss_pred HHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+..|++.|.++.|+.+-.-|+.=||++-. . .+-..+.++++++|+.||.+|..++.++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~-----~------~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD-----P------EAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH-----H------HHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC-----H------hHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 45678888667888888888888884411 1 3467788889999999999999998765
No 11
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.023 Score=46.94 Aligned_cols=86 Identities=24% Similarity=0.296 Sum_probs=69.3
Q ss_pred HcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCC-CHHhHHHHHHHH
Q 034103 10 DNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE-NTEVTKSALLCI 88 (103)
Q Consensus 10 ENa~kf~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~-d~eVr~eAL~av 88 (103)
+||..|.... -+..|..+| +++|+.+=+-|+.=||..++..|....-+-+.|+...+|..++++ +..+|-.||.|+
T Consensus 115 DnAndl~~~g--gl~~ll~~l-~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~Ai 191 (342)
T KOG2160|consen 115 DNANDLISLG--GLVPLLGYL-ENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAI 191 (342)
T ss_pred hhHHhHhhcc--CHHHHHHHh-cCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHH
Confidence 3555554433 233445577 567888899999999999999999999999999999999999875 667889999999
Q ss_pred HHHhcchhhh
Q 034103 89 QRLFLGAKYA 98 (103)
Q Consensus 89 Qklm~~~~~~ 98 (103)
.-++-|+++.
T Consensus 192 ssLIRn~~~g 201 (342)
T KOG2160|consen 192 SSLIRNNKPG 201 (342)
T ss_pred HHHHhcCcHH
Confidence 9999888554
No 12
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=95.82 E-value=0.031 Score=30.32 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=32.6
Q ss_pred cchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 54 PAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 54 P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
|..+..+-+.|+=..+++||.++|++++.+|+-|+.-+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 34667777789999999999999999999999998765
No 13
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.12 E-value=0.071 Score=38.79 Aligned_cols=45 Identities=27% Similarity=0.360 Sum_probs=35.5
Q ss_pred HHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 46 LSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 46 ige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+|.++..|| .+++.. -..+...|.+++|.||+.||.++..|+.+.
T Consensus 12 l~DL~~r~~---~~ve~~--~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d 56 (178)
T PF12717_consen 12 LGDLCIRYP---NLVEPY--LPNLYKCLRDEDPLVRKTALLVLSHLILED 56 (178)
T ss_pred HHHHHHhCc---HHHHhH--HHHHHHHHCCCCHHHHHHHHHHHHHHHHcC
Confidence 455566777 456653 477889999999999999999999998664
No 14
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=94.04 E-value=0.12 Score=37.40 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=34.4
Q ss_pred HccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 52 YHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 52 ~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
-.++.|.+-..=...+.++.|+.|+|++|+..||.|+-.+=
T Consensus 5 kf~npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~k 45 (141)
T PF07539_consen 5 KFKNPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTWK 45 (141)
T ss_pred hcCCcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34667777766667899999999999999999999998764
No 15
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=93.48 E-value=0.044 Score=46.49 Aligned_cols=74 Identities=26% Similarity=0.428 Sum_probs=61.1
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+.+-.|.+++ .|.||.++.=||--|..+..---+.-.++-+-|+-.|+.+|++|++..|.-.||.+|.-++.-+
T Consensus 243 qalpiL~KLi-ys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~ 316 (526)
T COG5064 243 QALPILAKLI-YSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGS 316 (526)
T ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecC
Confidence 3445566666 4789999999999998877655577778888899999999999999999999999998777544
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=93.45 E-value=0.18 Score=42.52 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=61.4
Q ss_pred HHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcchhhhh
Q 034103 25 VLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYAS 99 (103)
Q Consensus 25 ~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~~~~~ 99 (103)
.|...| .+.+|.+...+|.-|+..+++-.....++..-+.=..|+.++.++|.+|...|..++.++..+.+.+.
T Consensus 81 ~L~~gL-~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~ 154 (503)
T PF10508_consen 81 FLQRGL-THPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLE 154 (503)
T ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHH
Confidence 344444 35678899999999999998876667777778888999999999999999999999999997775554
No 17
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.65 E-value=0.34 Score=40.09 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=60.2
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcC--CCHHhHHHHHHHHHHHhcch
Q 034103 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH--ENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm~~~ 95 (103)
-+++|+.+|+++++..+-.=|.+=|+-++|+.|.|..-.-.++|=..++..|+. .+...|.-|+.=++.++...
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~ 242 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED 242 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh
Confidence 689999999744333444678999999999999999999999999999999998 45666677888788777544
No 18
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=0.097 Score=45.31 Aligned_cols=77 Identities=29% Similarity=0.399 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcchhh
Q 034103 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKY 97 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~~~ 97 (103)
-++|-.|..+| .+.|+.+++=||-=|..+...-|+.-+.+-+.|+=.++-.|+.|+.+.|+-.||.|+.-++..+++
T Consensus 236 ~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~ 312 (514)
T KOG0166|consen 236 APILPALLRLL-HSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDE 312 (514)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHH
Confidence 45677777777 588999999999999999999999999999999999999999999999999999998876665543
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=92.27 E-value=0.32 Score=39.53 Aligned_cols=71 Identities=23% Similarity=0.319 Sum_probs=49.7
Q ss_pred hCcHHHHHHHHHHhc---cCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 17 ENDFQILRVLLTILD---TSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 17 en~~~llk~L~~lL~---~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
..+-+++...++-|. .++||.+.+.|..-|+.+. ...+++.+ -..|.++++|++|.||+.|+.|+-++.-
T Consensus 71 ~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~-----~~~~~~~l--~~~v~~ll~~~~~~VRk~A~~~l~~i~~ 143 (526)
T PF01602_consen 71 HEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIR-----TPEMAEPL--IPDVIKLLSDPSPYVRKKAALALLKIYR 143 (526)
T ss_dssp TTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH------SHHHHHHH--HHHHHHHHHSSSHHHHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhc-----ccchhhHH--HHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 344444444443332 3577888888888888865 45566663 4778999999999999999999998874
Q ss_pred c
Q 034103 94 G 94 (103)
Q Consensus 94 ~ 94 (103)
.
T Consensus 144 ~ 144 (526)
T PF01602_consen 144 K 144 (526)
T ss_dssp H
T ss_pred c
Confidence 3
No 20
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=92.11 E-value=0.12 Score=36.29 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=38.0
Q ss_pred eeehhcchHHHHHHHccchhHHHHhh---C--hHHHHHhhhcCCCHHhHHHHH
Q 034103 38 ALAVACFDLSQFIQYHPAGRVIVTDL---K--AKERVMKLMNHENTEVTKSAL 85 (103)
Q Consensus 38 ~laVAc~Dige~vr~~P~gr~il~~l---g--~K~~vM~Lm~h~d~eVr~eAL 85 (103)
--|+.-.|...+=|+|-.=..+..+| | +...++.|+.|||+.||..|=
T Consensus 16 ~~A~~~~d~~~~Nr~~~k~~~~~~eLk~r~gd~r~aLl~LL~hpn~~VRl~AA 68 (106)
T PF09450_consen 16 GEAIDRGDARTANRLYDKMIRIYDELKSRGGDQRDALLPLLKHPNMQVRLWAA 68 (106)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHHHHSTT-GGGGGGGGGGSS-HHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHcCCChhHHHHHH
Confidence 34788899999999998777777776 3 458899999999999998763
No 21
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.06 E-value=0.18 Score=29.59 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=22.9
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 65 AKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+-..++.+|.+++++||..|..|+..|
T Consensus 29 ~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 29 LLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 556777899999999999999998754
No 22
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=91.88 E-value=0.36 Score=43.37 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=61.6
Q ss_pred HHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 25 VLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 25 ~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
.-+.+|+ +.||.+.+.|..=|.+.+.-.-.+|.-+.++|+-.++..|+.|++++|..+|.=|+-.|+=
T Consensus 237 e~i~mL~-~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf 304 (717)
T KOG1048|consen 237 EVISMLM-SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVF 304 (717)
T ss_pred HHHHHHh-ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhc
Confidence 4456664 7899999999999999999999999999999999999999999999999999999988774
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=87.13 E-value=1.5 Score=35.59 Aligned_cols=72 Identities=25% Similarity=0.352 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccc---hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA---GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~---gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
....++.|++++.+-++|..+++++.=||||..+.|+ ...++.. +.+....++++||.++|.|+.|+-...
T Consensus 412 ~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~------l~~~~~~~~~~vk~~ilt~~~Kl~~~~ 485 (526)
T PF01602_consen 412 REKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRS------LIENFIEESPEVKLQILTALAKLFKRN 485 (526)
T ss_dssp HHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHH------HHHHHTTSHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHH------HHHhhccccHHHHHHHHHHHHHHHhhC
Confidence 3568999999998778889999999999999999998 3333332 233345578899999999999998655
Q ss_pred h
Q 034103 96 K 96 (103)
Q Consensus 96 ~ 96 (103)
+
T Consensus 486 ~ 486 (526)
T PF01602_consen 486 P 486 (526)
T ss_dssp C
T ss_pred C
Confidence 3
No 24
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=86.24 E-value=1.5 Score=39.27 Aligned_cols=80 Identities=14% Similarity=0.233 Sum_probs=61.7
Q ss_pred HHHHHHHHHhccC-CCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch-hhh
Q 034103 21 QILRVLLTILDTS-SDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA-KYA 98 (103)
Q Consensus 21 ~llk~L~~lL~~s-~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~-~~~ 98 (103)
.++..|+++|... +|...+.=.+|=.++|++|-+.-..++++-++-..+..||.+.|++||.-|=.|+--++-.. +|.
T Consensus 576 gli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~ 655 (708)
T PF05804_consen 576 GLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA 655 (708)
T ss_pred ChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence 4678999999643 45544444678899999995555555577889999999999999999999998888887666 555
Q ss_pred hh
Q 034103 99 SF 100 (103)
Q Consensus 99 ~~ 100 (103)
.-
T Consensus 656 ~r 657 (708)
T PF05804_consen 656 ER 657 (708)
T ss_pred HH
Confidence 43
No 25
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=85.47 E-value=1.3 Score=44.02 Aligned_cols=74 Identities=9% Similarity=0.023 Sum_probs=64.2
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+.+|.|+.+|. +.++.+..=+|-+|..+...-++.+..+-+.|+=..+.++|.|++++++..|+.++.-+-..+
T Consensus 404 daik~LV~LL~-~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n 477 (2102)
T PLN03200 404 EAKKVLVGLIT-MATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV 477 (2102)
T ss_pred cchhhhhhhhc-cCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 67888999994 566778888999999999998888888888899999999999999999999999987776444
No 26
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.61 E-value=1.3 Score=29.95 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=24.2
Q ss_pred HHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034103 66 KERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 66 K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
=.-|+..++++|++|||.|..|+..+.-.
T Consensus 29 l~pVL~~~~D~d~rVRy~AcEaL~ni~k~ 57 (97)
T PF12755_consen 29 LPPVLKCFDDQDSRVRYYACEALYNISKV 57 (97)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 35677899999999999999998877643
No 27
>PRK09687 putative lyase; Provisional
Probab=84.33 E-value=1.4 Score=34.74 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=42.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHcc-------------------chh-HHHH---hhC---hHHHHHhhhc
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHP-------------------AGR-VIVT---DLK---AKERVMKLMN 74 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P-------------------~gr-~il~---~lg---~K~~vM~Lm~ 74 (103)
+.+..|..++.+..|+.|.+.|+.=||++....+ +-| ..+. ++| +-..+..+++
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~ 169 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLK 169 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhc
Confidence 4566666665456677777777777777632211 111 1122 222 3345566677
Q ss_pred CCCHHhHHHHHHHHHHH
Q 034103 75 HENTEVTKSALLCIQRL 91 (103)
Q Consensus 75 h~d~eVr~eAL~avQkl 91 (103)
++|++||+.|..++..+
T Consensus 170 d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 170 DPNGDVRNWAAFALNSN 186 (280)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 88888888888888876
No 28
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=84.27 E-value=2.6 Score=30.53 Aligned_cols=82 Identities=24% Similarity=0.320 Sum_probs=57.1
Q ss_pred HHhhhhCcHHHHHHHHHHhccCCCccee---ehhcchHHHHHHHccc-hhHHHHhh--ChHHHHHhhhcCCCHHhHHHHH
Q 034103 12 ITNFEENDFQILRVLLTILDTSSDPRAL---AVACFDLSQFIQYHPA-GRVIVTDL--KAKERVMKLMNHENTEVTKSAL 85 (103)
Q Consensus 12 a~kf~en~~~llk~L~~lL~~s~d~~~l---aVAc~Dige~vr~~P~-gr~il~~l--g~K~~vM~Lm~h~d~eVr~eAL 85 (103)
-..|.+.-..-++.|..+|+.++++.++ .++..+|-.+++.+|+ -|.+..-. +.=.-++.|++. +.+.-.||
T Consensus 58 ~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l 135 (165)
T PF08167_consen 58 WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETAL 135 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHH
Confidence 3556666667779999999876666544 4556788899999998 66665442 222334444443 78888999
Q ss_pred HHHHHHhcch
Q 034103 86 LCIQRLFLGA 95 (103)
Q Consensus 86 ~avQklm~~~ 95 (103)
.+++.+|.+.
T Consensus 136 ~~L~~ll~~~ 145 (165)
T PF08167_consen 136 DALATLLPHH 145 (165)
T ss_pred HHHHHHHHHC
Confidence 9999999754
No 29
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=83.34 E-value=2.8 Score=41.89 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch---
Q 034103 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA--- 95 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~--- 95 (103)
.....|.|+.+|+.........||.--+.-||-|.-.-|+-+.+-||-..|-+|+.++|+++.-||-.-+--+..|.
T Consensus 1773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1852 (2102)
T PLN03200 1773 AVSACRALVSLLEDQPTEEMKMVAICALQNLVMHSRTNKRAVAEAGGVQVVQELLLSSNPDTSGQAALLIKLLFSNHTIQ 1852 (2102)
T ss_pred cHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhccchHHHHHHccchhHHHHHHcCCCccHHHHHHHHHHHHHccchHH
Confidence 35678999999975444445566666799999998888888888899999999999999999999988777777655
Q ss_pred hhhh
Q 034103 96 KYAS 99 (103)
Q Consensus 96 ~~~~ 99 (103)
+|+|
T Consensus 1853 ~~~~ 1856 (2102)
T PLN03200 1853 EYAS 1856 (2102)
T ss_pred HHHH
Confidence 6664
No 30
>cd00183 TFIIS_I N-terminal domain (domain I) of transcription elongation factor S-II (TFIIS); similar to a domain found in elongin A and CRSP70; likely to be involved in transcription; domain I from TFIIS interacts with RNA polymerase II holoenzyme
Probab=82.17 E-value=10 Score=24.21 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=51.7
Q ss_pred HHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+..+...|+.+... .-.-.|-|+-...+.+|--..++..-++=..|-.|-.|+||+|+..|-.-+.+|.
T Consensus 4 v~r~~~~l~~~~~~-~~~~~~~~~L~~L~~~~it~~~L~~T~iG~~V~~Lrkh~~~~i~~~A~~Lv~~Wk 72 (76)
T cd00183 4 VLRAKKKLEKKDSN-EEVSRLLDLLRLLKKLPLTVEILKETRIGKKVNSLRKHSNEKIRKLAKALIKSWK 72 (76)
T ss_pred HHHHHHHhhccccC-CCHHHHHHHHHHHhcCCCCHHHHHHCCHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 44555555443221 2234688888889999999999988776677889999999999999988777765
No 31
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=81.79 E-value=2.5 Score=30.94 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=40.1
Q ss_pred cCCCcceeehhcchHHHHHHHccchhHHHHhh----ChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 32 TSSDPRALAVACFDLSQFIQYHPAGRVIVTDL----KAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 32 ~s~d~~~laVAc~Dige~vr~~P~gr~il~~l----g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
++.+|.+-..++.=+..++..+|.....++.- ..-..|..+++++|++||..|-.++..++.+-
T Consensus 141 ~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 141 KSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF 208 (228)
T ss_dssp T-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 46677776777777777888887211222111 24567889999999999999999998886543
No 32
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=80.09 E-value=2.3 Score=26.20 Aligned_cols=60 Identities=23% Similarity=0.372 Sum_probs=39.6
Q ss_pred CcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCC-CHHhHHHHHHHHH
Q 034103 18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE-NTEVTKSALLCIQ 89 (103)
Q Consensus 18 n~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQ 89 (103)
.+.+++..|.++| +++|+.+-.-|+.=||++ | .-.+-..+.+++.++ +..||..|..++.
T Consensus 28 ~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~i------~-----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 28 GDPEAIPALIELL-KDEDPMVRRAAARALGRI------G-----DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHHHHH-TSSSHHHHHHHHHHHHCC------H-----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHH-cCCCHHHHHHHHHHHHHh------C-----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 3457888888888 466776665566666654 1 112556677777664 6677999998863
No 33
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.85 E-value=3.1 Score=35.90 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=62.2
Q ss_pred hhhhCcHHH-----HHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhC--hHHHHHhhhcCCCHHhHHHHHH
Q 034103 14 NFEENDFQI-----LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLK--AKERVMKLMNHENTEVTKSALL 86 (103)
Q Consensus 14 kf~en~~~l-----lk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg--~K~~vM~Lm~h~d~eVr~eAL~ 86 (103)
...||.-++ ++.|+.+| +|.|+.+.--+|+-||-..- -.+.|+++-+-+ .-..+..||..+++.||-+|=.
T Consensus 196 hs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~l 273 (550)
T KOG4224|consen 196 HSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGL 273 (550)
T ss_pred hhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHH
Confidence 334554444 46899999 57888888888888886542 234677777766 5567889999999999999999
Q ss_pred HHHHHhcchhhh
Q 034103 87 CIQRLFLGAKYA 98 (103)
Q Consensus 87 avQklm~~~~~~ 98 (103)
|+.-+-.+.+|.
T Consensus 274 ALrnlasdt~Yq 285 (550)
T KOG4224|consen 274 ALRNLASDTEYQ 285 (550)
T ss_pred HHhhhcccchhh
Confidence 998777666664
No 34
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=79.48 E-value=6.9 Score=30.07 Aligned_cols=69 Identities=20% Similarity=0.371 Sum_probs=47.0
Q ss_pred hhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhh-ChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 16 EENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL-KAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 16 ~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
++++..++|..+.... +-=|.+ -+++...|.-...++.+ ..|.+|..++.++++.||-.|++-+|.++.
T Consensus 3 ~d~d~~v~K~~I~~~~-~iy~~~--------~~~i~~~~~~~~~W~~~~~lK~~Il~~~~~~~~gvk~~~iKFle~vIl 72 (239)
T PF11935_consen 3 NDEDPAVVKRAIQCST-SIYPLV--------FRWICVNPSDEQLWESMNELKDRILSLWDSENPGVKLAAIKFLERVIL 72 (239)
T ss_dssp T-SSHHHHHHHHHHHH-HHHHHH--------HHHHS--HHHHHHHHHHHHHHHHHHHGGGSSSHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH-HHHHHH--------HHHHcCCchHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 5667777777776652 111111 12233444556666776 799999999999999999999999999875
No 35
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=78.80 E-value=4.2 Score=30.90 Aligned_cols=86 Identities=16% Similarity=0.282 Sum_probs=45.9
Q ss_pred HHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhh-ChHHHHHhhhcCCCHHhHHHHH
Q 034103 7 FWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL-KAKERVMKLMNHENTEVTKSAL 85 (103)
Q Consensus 7 FW~ENa~kf~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~l-g~K~~vM~Lm~h~d~eVr~eAL 85 (103)
-|+-...++.-+ -.|-.+++=|.+.+.|-. -+|-.=+-+++++ -.|.+|+--+ ..-.-+-.-+++.|++|.-.+|
T Consensus 26 ~W~~~~e~Ldy~--~~Lpif~dGL~Et~~Py~-flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L 101 (183)
T PF10274_consen 26 QWKVDPEKLDYH--HYLPIFFDGLRETEHPYR-FLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATL 101 (183)
T ss_pred EEecChhhcchh--hHHHHHHhhhhccCccHH-HHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 355554444322 234455555544555532 2333334444444 2344444332 1112222346899999999999
Q ss_pred HHHHHHhcchh
Q 034103 86 LCIQRLFLGAK 96 (103)
Q Consensus 86 ~avQklm~~~~ 96 (103)
.++|.|+...+
T Consensus 102 ~~Lq~Lv~~~~ 112 (183)
T PF10274_consen 102 KALQQLVTSSD 112 (183)
T ss_pred HHHHHHHHhhh
Confidence 99999965543
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=78.18 E-value=5.7 Score=33.59 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=58.6
Q ss_pred CcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 18 n~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+.+++..++..| .+.|..+-..|+.=|..+.++ |.|-..+=.-+....+..+|.++|+.||+.++.++-.+..++
T Consensus 116 ~~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 116 VDNELLPLIIQCL-RDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred cCccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcC
Confidence 3456788888888 466777777888888888875 445544433355888999999999999999999999998776
No 37
>TIGR00277 HDIG uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG.
Probab=76.79 E-value=0.96 Score=27.21 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=12.6
Q ss_pred CcceeehhcchHHHHH
Q 034103 35 DPRALAVACFDLSQFI 50 (103)
Q Consensus 35 d~~~laVAc~Dige~v 50 (103)
+...+|..+||||...
T Consensus 28 ~~l~~AalLHDiG~~~ 43 (80)
T TIGR00277 28 ELARRGALLHDIGKPI 43 (80)
T ss_pred HHHHHHHHHHccCCcc
Confidence 3466788999999875
No 38
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=75.95 E-value=5.3 Score=30.04 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=57.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchh---HHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGR---VIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr---~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
++=+.|...|....++.++.-.+--++-+|..-|..| .++.++ =..|..++.|.|++|+-.||.|+.-++.-.
T Consensus 101 ~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~--v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 101 ELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEV--VTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 4556677777777788899999999999999999765 455553 367788889999999999999988877543
No 39
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.91 E-value=7.6 Score=35.82 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=54.1
Q ss_pred HhhhhCcHHHHHHHHHHhcc---CCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034103 13 TNFEENDFQILRVLLTILDT---SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ 89 (103)
Q Consensus 13 ~kf~en~~~llk~L~~lL~~---s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 89 (103)
.-|-+.+-+++--|.+-|.+ |++.-+++.|+.=||..+ +...+.++ -..|=+||+|+||-||+.|.+|.-
T Consensus 95 mLlLdE~qdvllLltNslknDL~s~nq~vVglAL~alg~i~-----s~Emardl--apeVe~Ll~~~~~~irKKA~Lca~ 167 (866)
T KOG1062|consen 95 MLLLDERQDLLLLLTNSLKNDLNSSNQYVVGLALCALGNIC-----SPEMARDL--APEVERLLQHRDPYIRKKAALCAV 167 (866)
T ss_pred HHHhccchHHHHHHHHHHHhhccCCCeeehHHHHHHhhccC-----CHHHhHHh--hHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34556777777777777643 677788888888888763 22333332 256788999999999999999998
Q ss_pred HHhc
Q 034103 90 RLFL 93 (103)
Q Consensus 90 klm~ 93 (103)
++.-
T Consensus 168 r~ir 171 (866)
T KOG1062|consen 168 RFIR 171 (866)
T ss_pred HHHH
Confidence 8864
No 40
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.17 E-value=15 Score=25.59 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=44.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhh---hc---CCCHHhHHHHHHHHHHHh
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKL---MN---HENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~L---m~---h~d~eVr~eAL~avQklm 92 (103)
+.++.|.+-|. +.+|.+.--|..=|-.+++.. |..+-.+++-+..+-+| +. ..+++||..+|..+|.|=
T Consensus 37 ~a~raL~krl~-~~n~~vql~AL~lLd~~vkNc--g~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 37 EAARAIRKKIK-YGNPHVQLLALTLLELLVKNC--GKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhC--ChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 44444444443 345655555666677788887 66666666655544443 33 358999999999999885
No 41
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=74.65 E-value=11 Score=30.02 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=46.7
Q ss_pred cHHHHHHHHHHhccCCCcceeehh---cchHHHHHHHccchhHHHHhhC---hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 19 DFQILRVLLTILDTSSDPRALAVA---CFDLSQFIQYHPAGRVIVTDLK---AKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVA---c~Dige~vr~~P~gr~il~~lg---~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+-++.+.+..+|-.. +.-|-|= -+|||=+.||+-.-.++|..+| +++.|+.-|+.+.+|=-..|-..|+.-+
T Consensus 102 SAKvm~~ikavLgaT--KiDLPVDINDPYDlGLLLRhLRHHSNLLAnIgdP~VreqVLsAMqEeeeEEe~DAa~gvr~~v 179 (238)
T PF02084_consen 102 SAKVMEDIKAVLGAT--KIDLPVDINDPYDLGLLLRHLRHHSNLLANIGDPEVREQVLSAMQEEEEEEEQDAANGVRDNV 179 (238)
T ss_pred cHHHHHHHHHHhccc--ccccccccCChhhHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Confidence 578899999999422 1112232 3689999999977777777765 5555555555555554445555555444
Q ss_pred cch
Q 034103 93 LGA 95 (103)
Q Consensus 93 ~~~ 95 (103)
+++
T Consensus 180 ln~ 182 (238)
T PF02084_consen 180 LNN 182 (238)
T ss_pred hcc
Confidence 443
No 42
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=74.23 E-value=9 Score=31.56 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=43.8
Q ss_pred cchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcchhhhh
Q 034103 43 CFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYAS 99 (103)
Q Consensus 43 c~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~~~~~ 99 (103)
+|++..+.+.+|..|.=+.-----.+|+.++=+++++||--|+..+-.++.+.+.+.
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~ 60 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQ 60 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHH
Confidence 589999999999887766544445677766666669999999999988887665543
No 43
>PF00173 Cyt-b5: Cytochrome b5-like Heme/Steroid binding domain This prints entry is a subset of the Pfam entry; InterPro: IPR001199 Cytochromes b5 are ubiquitous electron transport proteins found in animals, plants and yeasts []. The microsomal and mitochondrial variants are membrane-bound, while those from erythrocytes and other animal tissues are water-soluble [, ]. The 3D structure of bovine cyt b5 is known, the fold belonging to the alpha+beta class, with 5 strands and 5 short helices forming a framework for supporting a central haem group []. The cytochrome b5 domain is similar to that of a number of oxidoreductases, such as plant and fungal nitrate reductases, sulphite oxidase, yeast flavocytochrome b2 (L-lactate dehydrogenase) and plant cyt b5/acyl lipid desaturase fusion protein.; GO: 0020037 heme binding; PDB: 2I96_A 3KS0_A 1KBI_B 1KBJ_B 1LTD_A 1SZG_B 1SZF_A 1LDC_B 2OZ0_B 1LCO_A ....
Probab=74.05 E-value=0.62 Score=28.77 Aligned_cols=35 Identities=17% Similarity=0.465 Sum_probs=26.1
Q ss_pred Ccceeeh--hcchHHHHHHHccchhHHHHhhChHHHH
Q 034103 35 DPRALAV--ACFDLSQFIQYHPAGRVIVTDLKAKERV 69 (103)
Q Consensus 35 d~~~laV--Ac~Dige~vr~~P~gr~il~~lg~K~~v 69 (103)
++.+++| -.+|+..|+..+|.|+.++....|++.-
T Consensus 14 ~~~~v~i~g~VYDvt~~~~~hpgg~~~~~~~aG~D~T 50 (76)
T PF00173_consen 14 GDCWVIIDGKVYDVTDFLDRHPGGADILKKYAGRDAT 50 (76)
T ss_dssp TEEEEEETTEEEECTTTTTTSTTTSHHHHTTTTSBTH
T ss_pred CCEEEEECCEEcccccccccccchhHHHHHhcccccc
Confidence 3344444 4689999999999999999888666443
No 44
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=73.54 E-value=19 Score=25.14 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhh----cCCCHH---hHHHHHHHHHHHh
Q 034103 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM----NHENTE---VTKSALLCIQRLF 92 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm----~h~d~e---Vr~eAL~avQklm 92 (103)
-+.++.|.+=|. +.+|.+.--|..=+-.+|++. |..+-.+++-+..+-+|. .+..+. ||..+|..+|.|=
T Consensus 41 kea~~~l~krl~-~~~~~vq~~aL~lld~lvkNc--g~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 41 KEAARALRKRLK-HGNPNVQLLALTLLDALVKNC--GPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp HHHHHHHHHHHT-TSSHHHHHHHHHHHHHHHHHS--HHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHcC--CHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 456666666663 467777777777888899988 888888887776554444 244444 9999999999875
No 45
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=72.96 E-value=16 Score=24.51 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhh-ChHHHHHhhhcCCCHHhHHHHHH
Q 034103 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL-KAKERVMKLMNHENTEVTKSALL 86 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~l-g~K~~vM~Lm~h~d~eVr~eAL~ 86 (103)
-++++-+...+ +.+|+.|=--||.=|+.++|..+ -.++..+ .+=..+-.++..+|++||.-|=.
T Consensus 26 ~~Il~pVL~~~-~D~d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 26 DEILPPVLKCF-DDQDSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 35666666666 45788888889999999999984 4555554 46677788899999999998843
No 46
>PRK09687 putative lyase; Provisional
Probab=72.87 E-value=3.9 Score=32.15 Aligned_cols=63 Identities=16% Similarity=0.285 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
-+.+..|+.+|+ +.|+.+-.-|+.=||.+ +. ... .+-..++.++.++|++||.+|..++.++-
T Consensus 158 ~~ai~~L~~~L~-d~~~~VR~~A~~aLg~~-~~--~~~------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 158 EAAIPLLINLLK-DPNGDVRNWAAFALNSN-KY--DNP------DIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HHHHHHHHHHhc-CCCHHHHHHHHHHHhcC-CC--CCH------HHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 345555566663 33444444444444444 10 011 23455888899999999999999998864
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.80 E-value=5.8 Score=35.86 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=30.3
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
..+-.|...| .+.||.+-..|+-=||++- | -++...+.++|.++|++||+.|+.+++++
T Consensus 621 ~~~~~L~~~L-~D~d~~VR~~Av~~L~~~~---~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l 679 (897)
T PRK13800 621 PSVAELAPYL-ADPDPGVRRTAVAVLTETT---P--------PGFGPALVAALGDGAAAVRRAAAEGLREL 679 (897)
T ss_pred hhHHHHHHHh-cCCCHHHHHHHHHHHhhhc---c--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3444555666 3456655555555555431 1 12334444555566666666665555555
No 48
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.77 E-value=11 Score=32.23 Aligned_cols=83 Identities=14% Similarity=0.221 Sum_probs=60.5
Q ss_pred HcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcC-CCH---HhHHHHH
Q 034103 10 DNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH-ENT---EVTKSAL 85 (103)
Q Consensus 10 ENa~kf~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h-~d~---eVr~eAL 85 (103)
+-|+.|-..+ +++.|++.|..--||.+|+=+|--|+-+.-.-.--+.|.+ .||-.-+.++|.+ .+. +..+++|
T Consensus 232 ~hAr~ia~e~--~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~r~l~k~~l 308 (461)
T KOG4199|consen 232 GHARTIAKEG--ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGNRTLAKTCL 308 (461)
T ss_pred HHHHHHHHhh--hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhHHHHHHHHH
Confidence 3455664443 8999999998788999999999988877665544555554 5888888899976 333 4457888
Q ss_pred HHHHHHhcch
Q 034103 86 LCIQRLFLGA 95 (103)
Q Consensus 86 ~avQklm~~~ 95 (103)
..+.++-++-
T Consensus 309 slLralAG~D 318 (461)
T KOG4199|consen 309 SLLRALAGSD 318 (461)
T ss_pred HHHHHHhCCC
Confidence 8888877654
No 49
>PF03778 DUF321: Protein of unknown function (DUF321) ; InterPro: IPR005529 This entry represents a group of tandem repeats, found in Arabidopsis species, whose sequence is distantly related to the FARP (FMRFamide) group of neuropeptides (IPR002544 from INTERPRO). The function of these repeats is not known, being mostly found in uncharacterised proetins, but they are also present in the nuclear migration protein NUM1 [].
Probab=69.28 E-value=0.95 Score=23.16 Aligned_cols=8 Identities=50% Similarity=1.120 Sum_probs=6.2
Q ss_pred HHHHHcHH
Q 034103 6 LFWRDNIT 13 (103)
Q Consensus 6 ~FW~ENa~ 13 (103)
.||+||-.
T Consensus 2 rFwreN~g 9 (20)
T PF03778_consen 2 RFWRENHG 9 (20)
T ss_pred ccceeecC
Confidence 49999954
No 50
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=67.86 E-value=7.2 Score=30.57 Aligned_cols=80 Identities=15% Similarity=0.246 Sum_probs=50.8
Q ss_pred hhCcHHHHHHHHHHhccC-CCcceeehhcchHHHHHHHccchhHHHHhhCh------HHHHHhhhcCCCHHhHHHHHHHH
Q 034103 16 EENDFQILRVLLTILDTS-SDPRALAVACFDLSQFIQYHPAGRVIVTDLKA------KERVMKLMNHENTEVTKSALLCI 88 (103)
Q Consensus 16 ~en~~~llk~L~~lL~~s-~d~~~laVAc~Dige~vr~~P~gr~il~~lg~------K~~vM~Lm~h~d~eVr~eAL~av 88 (103)
+++.-...+.++.+|.+. +++.++--.+.=|+++++..|....++..+.. =...+.+++++|+-++..|...+
T Consensus 50 ~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iL 129 (312)
T PF03224_consen 50 EEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFIL 129 (312)
T ss_dssp ------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHH
T ss_pred HhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 444445566667777655 77777777777788999999988888866532 25667799999999999999999
Q ss_pred HHHhcch
Q 034103 89 QRLFLGA 95 (103)
Q Consensus 89 Qklm~~~ 95 (103)
-.++...
T Consensus 130 t~Ll~~~ 136 (312)
T PF03224_consen 130 TSLLSQG 136 (312)
T ss_dssp HHHHTST
T ss_pred HHHHHcC
Confidence 9999876
No 51
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=67.48 E-value=25 Score=23.39 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=48.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhc---------CCCHHhHHHHHHHHHHH
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN---------HENTEVTKSALLCIQRL 91 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~---------h~d~eVr~eAL~avQkl 91 (103)
++++.|.+=|. +.+|.+.-=|+.=|=..+++. |..+...++-+..+.+|+. ..++.||..|+..++.|
T Consensus 37 ~~~~~l~kRl~-~~~~~~~lkaL~lLe~lvkN~--g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 37 EAVDAIKKRIN-NKNPHVVLKALTLLEYCVKNC--GERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHc--cHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 45666666664 346666666666666778887 7777777777777777643 24889999999999887
Q ss_pred h
Q 034103 92 F 92 (103)
Q Consensus 92 m 92 (103)
-
T Consensus 114 ~ 114 (115)
T cd00197 114 A 114 (115)
T ss_pred h
Confidence 3
No 52
>smart00509 TFS2N Domain in the N-terminus of transcription elongation factor S-II (and elsewhere).
Probab=67.45 E-value=30 Score=22.15 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=41.6
Q ss_pred hcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 42 ACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 42 Ac~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
.|-|+=.-.+..|-...++..-++=..|=.|-.|+|++|+..|-.-+.+|.
T Consensus 20 ~~l~~L~~L~~~~~t~~~L~~T~iG~~v~~Lrkh~~~~I~~~A~~Li~~WK 70 (75)
T smart00509 20 RCLDILKKLKKLPITVDLLEETRIGKKVNGLRKHKNEEIRKLAKKLIKSWK 70 (75)
T ss_pred HHHHHHHHHhcCCCCHHHHHHCcHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 477777777789999999988765566778889999999999988877775
No 53
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=66.77 E-value=35 Score=23.31 Aligned_cols=65 Identities=15% Similarity=0.166 Sum_probs=43.3
Q ss_pred CcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHH
Q 034103 18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSA 84 (103)
Q Consensus 18 n~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eA 84 (103)
+.-.+++.|++...- .++ ...-..=+|=.-+-.+|.|..++.++|+...+-++..+-+|+.+-+.
T Consensus 27 ~~~~Ll~~LleWFnf-~~~-~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~i 91 (98)
T PF14726_consen 27 KERLLLKQLLEWFNF-PPV-PMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEI 91 (98)
T ss_pred cHHHHHHHHHHHhCC-CCC-ccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHH
Confidence 345788888888742 222 12222223333356789999999999999998888888888775543
No 54
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=66.47 E-value=24 Score=24.30 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=36.6
Q ss_pred HHHccchhHHHHhhChHHHHHhhhc--CCCHHhHHHHHHHHHHHhcch
Q 034103 50 IQYHPAGRVIVTDLKAKERVMKLMN--HENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 50 vr~~P~gr~il~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm~~~ 95 (103)
+-..|.-.+.+.++||=..|+.... ..||=+|-.|+.|+.-++-.|
T Consensus 14 ~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n 61 (102)
T PF09759_consen 14 CYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGN 61 (102)
T ss_pred HhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCC
Confidence 3345666777778888888887775 459999999999999999877
No 55
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=66.33 E-value=32 Score=24.48 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHH---HHHhhhc-CCCHHhHHHHHHHHHHHh
Q 034103 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKE---RVMKLMN-HENTEVTKSALLCIQRLF 92 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~---~vM~Lm~-h~d~eVr~eAL~avQklm 92 (103)
-+.+|.|.+=| .+.||.+.--|..=|-.+|++. |...-.++.-+. .+..+.+ ..+++||..+|..+|.|=
T Consensus 40 k~a~ral~krl-~~~n~~vql~AL~LLe~~vkNC--G~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 40 KYAMRALKKRL-LSKNPNVQLYALLLLESCVKNC--GTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHC--CHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 34455555555 2456666666666677888887 665555544332 2333333 689999999999999885
No 56
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=65.57 E-value=13 Score=28.99 Aligned_cols=73 Identities=22% Similarity=0.277 Sum_probs=54.6
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhC----------hHHHHHhhhcCCCHHhHHHHHHHHHH
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLK----------AKERVMKLMNHENTEVTKSALLCIQR 90 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg----------~K~~vM~Lm~h~d~eVr~eAL~avQk 90 (103)
+-+..+...++ .+++.+-.+|+.=|..++-.| |..+++..+ .-..+...+.+++++++.-|...+-|
T Consensus 64 ~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~--g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~K 140 (298)
T PF12719_consen 64 EHLPLFLQALQ-KDDEEVKITALKALFDLLLTH--GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCK 140 (298)
T ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHc--CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34555666663 357788888999899999888 666665544 23345566688899999999999999
Q ss_pred Hhcchh
Q 034103 91 LFLGAK 96 (103)
Q Consensus 91 lm~~~~ 96 (103)
|+.+..
T Consensus 141 LlL~~~ 146 (298)
T PF12719_consen 141 LLLSGR 146 (298)
T ss_pred HHhcCC
Confidence 998873
No 57
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=65.34 E-value=19 Score=32.62 Aligned_cols=27 Identities=22% Similarity=0.205 Sum_probs=20.9
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 67 ERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
..++.++.++|++||..|+.++..+-.
T Consensus 778 ~~L~~ll~D~d~~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 778 DAVRALTGDPDPLVRAAALAALAELGC 804 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 567788888888888888888877653
No 58
>KOG0537 consensus Cytochrome b5 [Energy production and conversion]
Probab=65.34 E-value=3.6 Score=29.17 Aligned_cols=36 Identities=19% Similarity=0.494 Sum_probs=27.7
Q ss_pred CCCcceeeh--hcchHHHHHHHccchhHHHHhhChHHH
Q 034103 33 SSDPRALAV--ACFDLSQFIQYHPAGRVIVTDLKAKER 68 (103)
Q Consensus 33 s~d~~~laV--Ac~Dige~vr~~P~gr~il~~lg~K~~ 68 (103)
+.|+.++.| =.||+..|...||.|-.+|-+..||+.
T Consensus 17 ~~~d~Wvii~gkVYDvT~Fl~eHPGG~~vLl~~AGkDa 54 (124)
T KOG0537|consen 17 KKDDCWVIIHGKVYDVTSFLDEHPGGEDVLLEYAGKDA 54 (124)
T ss_pred CCCCeEEEECCEEEeccchhhhCCChHHHHHHHhchhh
Confidence 345555555 368999999999999988888776653
No 59
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=63.20 E-value=14 Score=29.46 Aligned_cols=56 Identities=18% Similarity=0.273 Sum_probs=49.5
Q ss_pred ehhcchHHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHHHHhcch
Q 034103 40 AVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 40 aVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~~ 95 (103)
+-|..=|.-.+=.||..|.+..+-++-..++.|++ ...+.|...+|.|+--+|+.+
T Consensus 109 ~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~ 165 (257)
T PF08045_consen 109 ALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDS 165 (257)
T ss_pred HHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcC
Confidence 33557888899999999999999999999999995 468999999999999999887
No 60
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=62.92 E-value=16 Score=32.20 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=57.1
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhc-----CCCHHhHHHHHHHHHHHhc
Q 034103 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-----HENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~-----h~d~eVr~eAL~avQklm~ 93 (103)
+.++++.+.+.+ .|+|...+.-+.==||-|+|.-......+++ |.-.++|+++. .+|-++.+.+|-|+.-+|.
T Consensus 313 ~p~~l~~~~sw~-~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~-~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I 390 (604)
T KOG4500|consen 313 DPQFLDFLESWF-RSDDSNLITMGSLAIGNFARRDDICIQLVQK-DFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI 390 (604)
T ss_pred CcHHHHHHHHHh-cCCchhHHHHHHHHHHhhhccchHHHHHHHH-HHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence 346888888888 4777776666777799999999888888877 66677777763 2577788889999988885
Q ss_pred c
Q 034103 94 G 94 (103)
Q Consensus 94 ~ 94 (103)
-
T Consensus 391 P 391 (604)
T KOG4500|consen 391 P 391 (604)
T ss_pred c
Confidence 3
No 61
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.43 E-value=13 Score=35.78 Aligned_cols=76 Identities=16% Similarity=0.237 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034103 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+..++-.....|..+.+|.-..=+|==||.+-..|+..|-.-.+.+|.+++..+++.+-||||-.|+.|+..++.+
T Consensus 597 ~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 3456666666774323554333344448999999999998888899999999999999999999999999999975
No 62
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=61.28 E-value=44 Score=23.93 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=48.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHh---hhcC-CCHHhHHHHHHHHHHHh
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK---LMNH-ENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~---Lm~h-~d~eVr~eAL~avQklm 92 (103)
+.+|.|.+=|. +.||.+.--|..=|...|+.. |..+-.+..-|..+=+ +.+. .+++||...|..+|.|=
T Consensus 37 ~a~ral~KRl~-~~n~~v~l~AL~LLe~~vkNC--G~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~ 109 (144)
T cd03568 37 DCLKAIMKRLN-HKDPNVQLRALTLLDACAENC--GKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWA 109 (144)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHC--CHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 44555555553 566777666777788889998 7777777665544433 3454 69999999999999984
No 63
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=59.93 E-value=40 Score=22.47 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=50.6
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
.++.....| .+..+.+-|=+.+-|..+|+... -.++..-++-...++.+.|+|+=|=-.|++++..|..
T Consensus 4 ~~~~al~~L-~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 4 TLQEALSDL-NDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHc-cCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 445555556 34566778888899999998876 2333333566677888999999999999999887753
No 64
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=58.84 E-value=41 Score=24.07 Aligned_cols=69 Identities=12% Similarity=0.117 Sum_probs=44.5
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhh---c------CCCHHhHHHHHHHHHHH
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM---N------HENTEVTKSALLCIQRL 91 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm---~------h~d~eVr~eAL~avQkl 91 (103)
+.+|.|.+-| .+.+|.+.--|+.=|-..|+.. |..+-.+.+-|..+-+|+ + ..+++||...|..+|.|
T Consensus 38 ~a~rai~krl-~~~n~~v~l~AL~LLe~~vkNC--G~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (139)
T cd03567 38 LAVRLLAHKI-QSPQEKEALQALTVLEACMKNC--GERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSW 114 (139)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHc--CHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 3444444444 2455655555555666777777 776666666555554444 3 25799999999999987
Q ss_pred h
Q 034103 92 F 92 (103)
Q Consensus 92 m 92 (103)
=
T Consensus 115 ~ 115 (139)
T cd03567 115 T 115 (139)
T ss_pred H
Confidence 5
No 65
>PTZ00429 beta-adaptin; Provisional
Probab=57.89 E-value=20 Score=32.46 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=39.8
Q ss_pred CCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 34 SDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 34 ~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
.+|-|---|+.=++.+.+..|+ ++...|-...+.+|+..+|+.|...|+.++..+..
T Consensus 152 ~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 152 PDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVND 208 (746)
T ss_pred CCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4554444444445555555663 45555667788899999999999999999888864
No 66
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=57.83 E-value=13 Score=29.13 Aligned_cols=79 Identities=20% Similarity=0.353 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhh----cCCCHHhHHHHHHHHHHHhc
Q 034103 18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM----NHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 18 n~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm----~h~d~eVr~eAL~avQklm~ 93 (103)
++......+.++|+ ++|+.+.-.||+=++.++.+.|....-..+ +.=..++..+ ++++.++.+-|+.|+|.++.
T Consensus 102 ~~~~~~~~fl~ll~-~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~-~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~ 179 (312)
T PF03224_consen 102 DDSDPYSPFLKLLD-RNDSFIQLKAAFILTSLLSQGPKRSEKLVK-EALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR 179 (312)
T ss_dssp TTH--HHHHHHH-S--SSHHHHHHHHHHHHHHHTSTTT--HHHHH-HHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT
T ss_pred ccchhHHHHHHHhc-CCCHHHHHHHHHHHHHHHHcCCccccchHH-HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC
Confidence 34457888888775 569888999999999999998864443210 1113344444 45788899999999999998
Q ss_pred chhhh
Q 034103 94 GAKYA 98 (103)
Q Consensus 94 ~~~~~ 98 (103)
.++|-
T Consensus 180 ~~~~R 184 (312)
T PF03224_consen 180 SKEYR 184 (312)
T ss_dssp SHHHH
T ss_pred cchhH
Confidence 77654
No 67
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=57.22 E-value=42 Score=26.74 Aligned_cols=75 Identities=20% Similarity=0.333 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhccCCCcceeehhcch-HHHHHHHccchhHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHHHhcch
Q 034103 20 FQILRVLLTILDTSSDPRALAVACFD-LSQFIQYHPAGRVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~D-ige~vr~~P~gr~il~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQklm~~~ 95 (103)
..-++.|+++|+.+..+. +.+||=| +-....-.|.--+.-++++|=..|-.++.+. +.+||..-+.-+.-.+...
T Consensus 132 ~~~m~lll~LL~~~~~~~-i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 132 EQNMELLLDLLSPSNPPA-IQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred hhhHHHHHHHhccCCCch-HHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHccccccHHHhHHHHHHHHHHHccc
Confidence 456778999996555544 4555544 5556666777777999999999999999754 8999988877776666544
No 68
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=56.65 E-value=26 Score=23.29 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=32.2
Q ss_pred cchHHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 43 CFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 43 c~Dige~vr~~P~g-r~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+|...++..|.| +.++..+ ..-|+++|+.|.+.||..+--+|-|-
T Consensus 21 i~~i~d~~~~~~~~~~~~~~~l------~kRl~~~~~~~~lkaL~lLe~lvkN~ 68 (115)
T cd00197 21 IMEICDLINETNVGPKEAVDAI------KKRINNKNPHVVLKALTLLEYCVKNC 68 (115)
T ss_pred HHHHHHHHHCCCccHHHHHHHH------HHHhcCCcHHHHHHHHHHHHHHHHHc
Confidence 45677777766654 5555443 22346789999999999988888553
No 69
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=56.49 E-value=14 Score=32.52 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch-hhh
Q 034103 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA-KYA 98 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~-~~~ 98 (103)
-+..+.++..-+ .++.+.-.|+.=|..|.+++|.=..- +=..++.|...+|..||.+|++.+-.+-..+ +|+
T Consensus 22 ~~~y~~il~~~k--g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 22 EEDYKEILDGVK--GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHHHHHHHGGG--S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H
T ss_pred HHHHHHHHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH
Confidence 344444444432 46778889999999999999963321 4466888999999999999999998888776 666
Q ss_pred h
Q 034103 99 S 99 (103)
Q Consensus 99 ~ 99 (103)
+
T Consensus 95 ~ 95 (556)
T PF05918_consen 95 S 95 (556)
T ss_dssp H
T ss_pred h
Confidence 4
No 70
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=56.03 E-value=3.9 Score=30.76 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=27.2
Q ss_pred HHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHH
Q 034103 50 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALL 86 (103)
Q Consensus 50 vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~ 86 (103)
.|.|.-|-+|+.+||++. |.||++ +| -||.||.
T Consensus 127 ~R~yGiGAQIL~dLGV~~--mrLLtn-~~-~k~~~L~ 159 (197)
T PRK00393 127 ERDYTLAADMLKALGVKK--VRLLTN-NP-KKVEALT 159 (197)
T ss_pred ceehhHHHHHHHHcCCCE--EEECCC-CH-HHHHHHH
Confidence 688888999999999986 889988 33 3788885
No 71
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.88 E-value=36 Score=31.53 Aligned_cols=62 Identities=15% Similarity=0.307 Sum_probs=48.7
Q ss_pred HHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 25 VLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 25 ~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+|.-++ .++||.--=++|.=++...+-||-. |-. -|+.|.++|...|+.||-.||--+..|+
T Consensus 303 KLr~fi-edsDqNLKYlgLlam~KI~ktHp~~--Vqa---~kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 303 KLRIFI-EDSDQNLKYLGLLAMSKILKTHPKA--VQA---HKDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHhhhh-hcCCccHHHHHHHHHHHHhhhCHHH--HHH---hHHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 444444 4678887888888899999999743 322 3789999999999999999998887766
No 72
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=55.38 E-value=2.4 Score=31.93 Aligned_cols=36 Identities=33% Similarity=0.608 Sum_probs=28.0
Q ss_pred CCCcceeeh--hcchHHHHHHHccchhHHHHhhChHHHH
Q 034103 33 SSDPRALAV--ACFDLSQFIQYHPAGRVIVTDLKAKERV 69 (103)
Q Consensus 33 s~d~~~laV--Ac~Dige~vr~~P~gr~il~~lg~K~~v 69 (103)
++| ..+.| -.||+..|+..||.|-.|+-...+|..-
T Consensus 63 ~~d-~~ivi~g~VyDvs~fl~~HPGGe~ii~~~~g~Dat 100 (164)
T COG5274 63 SED-CWIVINGKVYDVSQFLDEHPGGEDIIKDTAGKDAT 100 (164)
T ss_pred ccc-eEEEEcCEEEEhhhccccCCCcceeehhccCchhh
Confidence 444 44444 4799999999999999999988777654
No 73
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=55.33 E-value=24 Score=24.62 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=19.6
Q ss_pred hcCCCHHhHHHHHHHHHHHhcch
Q 034103 73 MNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 73 m~h~d~eVr~eAL~avQklm~~~ 95 (103)
+.|+||.|...||.-+..+|.|-
T Consensus 46 l~~~n~~v~l~AL~lLe~~vkNc 68 (133)
T smart00288 46 LNNKNPHVALLALTLLDACVKNC 68 (133)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHC
Confidence 56899999999999988888663
No 74
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=54.87 E-value=8.9 Score=32.84 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=32.1
Q ss_pred Ccceeehh-cchHHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHH
Q 034103 35 DPRALAVA-CFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKS 83 (103)
Q Consensus 35 d~~~laVA-c~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~-h~d~eVr~e 83 (103)
+..++.|- .+||.+|++.||.|-.+|+.+.|-+.-=..-+ |++..-.|.
T Consensus 22 ~~~W~~id~vYd~s~~~~~HPGG~~~I~~~~g~DaTdaF~AfH~~~~~~~~ 72 (430)
T KOG4232|consen 22 EGLWLVIDGVYDISDWIKRHPGGSRVIEHYAGQDATDAFEAFHPGTAFAYK 72 (430)
T ss_pred CceEEEeeccccHHHHHHhCCCchhHHHHhcCCccchHHHHhCCChHHHHH
Confidence 34556554 89999999999999999988765443222222 444444433
No 75
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=53.30 E-value=12 Score=23.04 Aligned_cols=44 Identities=9% Similarity=0.160 Sum_probs=28.5
Q ss_pred HHHHHHHccchhHHHHhhC------hHHHHHhhhcC--CCHHhHHHHHHHHH
Q 034103 46 LSQFIQYHPAGRVIVTDLK------AKERVMKLMNH--ENTEVTKSALLCIQ 89 (103)
Q Consensus 46 ige~vr~~P~gr~il~~lg------~K~~vM~Lm~h--~d~eVr~eAL~avQ 89 (103)
||++|..+|+.-.|..++| |+.-+-+-... =|++-=.++|.++|
T Consensus 5 Vgeiv~~~p~~a~vf~~~gIDfCCgG~~~L~eA~~~~~ld~~~vl~~L~~lq 56 (56)
T PF04405_consen 5 VGEIVAEDPRAARVFRKYGIDFCCGGNRSLEEACEEKGLDPEEVLEELNALQ 56 (56)
T ss_pred HHHHHHHChHHHHHHHHcCCcccCCCCchHHHHHHHcCCCHHHHHHHHHHcC
Confidence 7999999999999999984 43333333322 25555555555544
No 76
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=52.16 E-value=16 Score=22.15 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=16.6
Q ss_pred HHHHHHHccchhHHHHhhC
Q 034103 46 LSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 46 ige~vr~~P~gr~il~~lg 64 (103)
|+++++.||+-+.++.++|
T Consensus 7 I~el~~~yP~~~~il~~~g 25 (59)
T PF08984_consen 7 IYELLEQYPELIEILVSYG 25 (59)
T ss_dssp HHHHHHH-GGGHHHHHHTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 6899999999999999987
No 77
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.42 E-value=21 Score=33.23 Aligned_cols=72 Identities=26% Similarity=0.301 Sum_probs=51.0
Q ss_pred CcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 18 n~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~g-r~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..++++++|+++|++..-|..-|...-=|||++...|+- =+++..+ +| =.+.++++||+|.|...-|+.+-+
T Consensus 463 ~h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~PDVLR~l-ak-----sFs~E~~evKlQILnL~aKLyl~~ 535 (968)
T KOG1060|consen 463 EHLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIAPDVLRKL-AK-----SFSDEGDEVKLQILNLSAKLYLTN 535 (968)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhchHHHHHH-HH-----hhccccchhhHHHHHhhhhheEec
Confidence 357889999999977666665566666689998888752 2222221 12 236899999999999988887766
No 78
>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.
Probab=50.01 E-value=7.6 Score=22.73 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=13.7
Q ss_pred HHHHHcHHhhhhCcHHH
Q 034103 6 LFWRDNITNFEENDFQI 22 (103)
Q Consensus 6 ~FW~ENa~kf~en~~~l 22 (103)
+||++|...|...|-++
T Consensus 3 ~F~~~~lp~l~~~NP~v 19 (52)
T PF05047_consen 3 DFLKNNLPTLKYHNPQV 19 (52)
T ss_dssp HHHHHTHHHHHHHSTT-
T ss_pred hHHHHhHHHHHHHCCCc
Confidence 79999999998777554
No 79
>TIGR02511 type_III_tyeA type III secretion effector delivery regulator, TyeA family. Members of this family include both small proteins, about 90 amino acids, in which this model covers the whole, and longer proteins of about 360 residues which match in the C-terminal region. The longer proteins (HrpJ) have N-terminal regions that match Pfam model pfam07201. Members of this family belong to bacterial type III secretion systems, and include TyeA from the well-studied Yersinia systems. TyeA appears involved in calcium-responsive regulation of the delivery of type III effectors.
Probab=49.45 E-value=71 Score=20.77 Aligned_cols=67 Identities=18% Similarity=0.160 Sum_probs=48.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHcc--chhHHHHhhChHHHHHhhhcC---CCHHhHHHHHHHHHHHhc
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHP--AGRVIVTDLKAKERVMKLMNH---ENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P--~gr~il~~lg~K~~vM~Lm~h---~d~eVr~eAL~avQklm~ 93 (103)
.++..++.+.+ +. -|...||...++..+ ..+.-+.-+++=.+++..|-. .|++-|-++|.|+|.++.
T Consensus 5 ~Ll~~vl~l~e----q~--Wl~~~~l~~l~~~l~~~~~~~qv~fl~~l~~l~~~lP~~lf~D~eqR~~~L~~~~~~~d 76 (79)
T TIGR02511 5 GLLGDLLALVE----ER--WLGPDWIEQLANALGLPELEHRVAFLQGLKRLLRLLPIALFSDEEQRQNLLQALQEAID 76 (79)
T ss_pred HHHHHHHHHhh----cc--cCCHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHHHH
Confidence 45666666663 22 455788988888875 445545566666677777754 599999999999999884
No 80
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=49.23 E-value=6.2 Score=25.19 Aligned_cols=31 Identities=16% Similarity=0.372 Sum_probs=18.8
Q ss_pred CcHHHHHHHHHH-hccC------CCcceeehhcchHHH
Q 034103 18 NDFQILRVLLTI-LDTS------SDPRALAVACFDLSQ 48 (103)
Q Consensus 18 n~~~llk~L~~l-L~~s------~d~~~laVAc~Dige 48 (103)
+..+++.+...- ++.. ..-++++|||+||-.
T Consensus 21 d~~k~lervahrvmd~~evtaidkqgtiisiac~divk 58 (65)
T PF13066_consen 21 DQGKMLERVAHRVMDNKEVTAIDKQGTIISIACNDIVK 58 (65)
T ss_pred hhhHHHHHHHHHhcccceeEEeccCCcEEEEEecceee
Confidence 445666655544 3221 234789999999853
No 81
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=48.79 E-value=52 Score=23.55 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=20.8
Q ss_pred HHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034103 69 VMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 69 vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
|..-++|+||.|...||.-+-.+|-|
T Consensus 43 i~krl~~~n~~v~l~AL~LLe~~vkN 68 (139)
T cd03567 43 LAHKIQSPQEKEALQALTVLEACMKN 68 (139)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 44456899999999999888887744
No 82
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=48.77 E-value=22 Score=31.48 Aligned_cols=59 Identities=29% Similarity=0.356 Sum_probs=36.3
Q ss_pred CChHHHHHcHHh-hhhCcHHHHHHHHHHhccCCCcce--eehhcchHHHHHHHccchhHHHHh
Q 034103 3 KDPLFWRDNITN-FEENDFQILRVLLTILDTSSDPRA--LAVACFDLSQFIQYHPAGRVIVTD 62 (103)
Q Consensus 3 ~se~FW~ENa~k-f~en~~~llk~L~~lL~~s~d~~~--laVAc~Dige~vr~~P~gr~il~~ 62 (103)
.++.||++|... |-+=+ +-++.+++=|++...... -|.-.+||-+||..+|+=++.=+.
T Consensus 274 ~~D~~w~~~k~~~f~~v~-e~l~~~~~~l~~~~~~~~~~~~~s~~dik~~v~~lpel~~~~~~ 335 (582)
T COG5158 274 KDDPFWNDNKFLNFGEVG-EKLKKLAKELKTKAQLRHKENAKSVNDIKEFVDKLPELQKRSRS 335 (582)
T ss_pred cccHhHHHhccCchhhHH-HHHHHHHHHHHHHHhhhhhhhcccHHHHHHHHHhhHHHHHHHHH
Confidence 467899999877 54433 445555555532211111 135789999999999975444433
No 83
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=48.53 E-value=90 Score=21.70 Aligned_cols=69 Identities=23% Similarity=0.281 Sum_probs=42.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHH---HHHhhhcCC--CHHhHHHHHHHHHHHh
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKE---RVMKLMNHE--NTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~---~vM~Lm~h~--d~eVr~eAL~avQklm 92 (103)
+.++.|.+=|. +.+|.+.--|..=+..+|+.. |..+-.++.-+. .+..+++.+ .+.||..+|..+|.|=
T Consensus 37 ~a~r~l~krl~-~~n~~v~l~AL~lLe~~vkNc--g~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 37 DAVRLLKKRLN-NKNPHVALLALTLLDACVKNC--GSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHC--CHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 44455555553 456666666677777888887 666655554332 333444432 3449999999999874
No 84
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=48.21 E-value=49 Score=24.01 Aligned_cols=53 Identities=13% Similarity=0.090 Sum_probs=31.4
Q ss_pred eeehhcch-HHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 38 ALAVACFD-LSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 38 ~laVAc~D-ige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
++.-++.. |-.++++.|-+..++ ...+...++|.+|.||.+++.++..++...
T Consensus 109 ~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 109 FIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp HHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 33444443 566666665222321 345666789999999999999998887544
No 85
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=47.18 E-value=35 Score=29.08 Aligned_cols=51 Identities=27% Similarity=0.477 Sum_probs=40.9
Q ss_pred chHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 44 FDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 44 ~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
-+|-+|++.+|+=|.++.+ -+...+..+++|+|+.+|.-=-.|-.+||...
T Consensus 147 ~eI~~~l~~~pe~~~LvGe-Ea~~q~~~~~~~e~e~~~~~l~~~Fs~lM~~~ 197 (411)
T KOG2757|consen 147 EEIKQFLDTIPELRELVGE-EAARQLKDLTSHEDEDSKKVLKLCFSRLMKAE 197 (411)
T ss_pred HHHHHHHHhChHHHHHhhH-HHHHHHHhhccchhhHHHHHHHHHHHHHhcCc
Confidence 3677888999998888865 47888999999998999887767777888554
No 86
>PTZ00429 beta-adaptin; Provisional
Probab=47.04 E-value=37 Score=30.81 Aligned_cols=56 Identities=14% Similarity=0.291 Sum_probs=32.8
Q ss_pred CcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcchh
Q 034103 35 DPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAK 96 (103)
Q Consensus 35 d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~~ 96 (103)
+|...+-..-=||||....|++-.+++++ ..=...++++||.+.|.|+-|+....|
T Consensus 455 e~~AKaaiiWILGEy~~~I~~a~~~L~~~------i~~f~~E~~~VqlqlLta~vKlfl~~p 510 (746)
T PTZ00429 455 EEEAKVSLLWMLGEYCDFIENGKDIIQRF------IDTIMEHEQRVQLAILSAAVKMFLRDP 510 (746)
T ss_pred cHHHHHHHHHHHHhhHhhHhhHHHHHHHH------HhhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 44444444444555555555444443332 111134789999999999999887663
No 87
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.33 E-value=30 Score=30.26 Aligned_cols=76 Identities=20% Similarity=0.239 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034103 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
|..+|..|..+|..|..+.+-.=||-=|+.....-|+=.+-+=.-|.=..++.+|+..+-++|+||.-|+.-+-..
T Consensus 319 ~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~ 394 (514)
T KOG0166|consen 319 NSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSS 394 (514)
T ss_pred hcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhccc
Confidence 3456777888886554444555577777777776664444444459999999999999999999999998765543
No 88
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=46.21 E-value=43 Score=28.06 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=17.0
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 67 ERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
..+..+++++|+.||.+|+.++.++
T Consensus 150 ~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 150 PALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 3555666777777777777777654
No 89
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=45.54 E-value=60 Score=29.31 Aligned_cols=61 Identities=20% Similarity=0.264 Sum_probs=40.1
Q ss_pred CcceeehhcchHHHH---HHHccchhHHHHh-hChHHH--HH-hhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 35 DPRALAVACFDLSQF---IQYHPAGRVIVTD-LKAKER--VM-KLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 35 d~~~laVAc~Dige~---vr~~P~gr~il~~-lg~K~~--vM-~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
...+++..--||+-+ +..||--+...++ .-+|+. +. .+..|+|++++.||++|+..+=.++
T Consensus 292 Te~v~~l~~~~I~~l~~~v~~~~~~s~s~~Qe~~~K~~~~~lk~~~a~~n~~l~~qa~~~v~~~~~~~ 359 (763)
T KOG4231|consen 292 TETVLKLSSPDIISLLQVVVTLAFVSDSVSQEMLTKDMLKALKSLCAHKNPELQRQALLAVGNLAFCL 359 (763)
T ss_pred chhhhhhccccHhhHHHHHhcCCchhhhHHhhhhHHHHHHHHHHHhcccChHHHHHHHHHHHHheecc
Confidence 345666666666644 5557766666655 323332 22 2347999999999999999887664
No 90
>cd07361 MEMO_like Memo (mediator of ErbB2-driven cell motility) is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. This subfamily is composed of Memo (mediator of ErbB2-driven cell motility) and similar proteins. Memo is a protein that is co-precipitated with the C terminus of ErbB2, a protein involved in cell motility. It is required for the ErbB2-driven cell mobility and is found in protein complexes with cofilin, ErbB2 and PLCgamma1. However, Memo is not homologous to any known signaling proteins, and its function in ErbB2 signaling is not known. Structural studies show that Memo binds directly to a specific ErbB2-derived phosphopeptide. Memo is homologous to class III nonheme iron-dependent extradiol dioxygenases, however, no metal binding or enzymatic activity can be detected for Memo. This subfamily also contains a few members containing a C-terminal AMMECR1-like domain. The AMMECR1 protein was proposed to be a regulatory factor that is potentia
Probab=45.44 E-value=19 Score=27.73 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHhcc-CCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHh
Q 034103 19 DFQILRVLLTILDT-SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEV 80 (103)
Q Consensus 19 ~~~llk~L~~lL~~-s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eV 80 (103)
..+....+.++|.. ..++.++-|++.|+.++... ...+++. .++|+.+...|++=
T Consensus 152 ~~~~~~~~g~~l~~~~~~~~~~iV~SsDlSH~~~~-----~~a~~~D--~~~i~~i~~~d~~~ 207 (266)
T cd07361 152 SPEAAEALAEALSKYLLDPDTLIVISSDFSHYGPR-----ESAERLD--RKAIEAILALDPEG 207 (266)
T ss_pred CHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCcCCH-----HHHHHHH--HHHHHHHHcCCHHH
Confidence 34555666666643 25778999999999988655 4444433 56677776666553
No 91
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.33 E-value=77 Score=29.56 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=48.7
Q ss_pred HHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
+++|.++| .++|..+-=||.+=|+..|..-|. .+++. ..-|.+.+.++|+.+|++||.=.-+|+-
T Consensus 315 iniLgkFL-~n~d~NirYvaLn~L~r~V~~d~~---avqrH--r~tIleCL~DpD~SIkrralELs~~lvn 379 (866)
T KOG1062|consen 315 INILGKFL-LNRDNNIRYVALNMLLRVVQQDPT---AVQRH--RSTILECLKDPDVSIKRRALELSYALVN 379 (866)
T ss_pred HHHHHHHh-cCCccceeeeehhhHHhhhcCCcH---HHHHH--HHHHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 45666666 356667778888888877777664 44443 4778999999999999999988777653
No 92
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=44.68 E-value=47 Score=22.86 Aligned_cols=72 Identities=26% Similarity=0.310 Sum_probs=45.7
Q ss_pred hhCcHHHHHHHHHHhccCCC-cce--eehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcC--CCHHhHHHHHHHHHH
Q 034103 16 EENDFQILRVLLTILDTSSD-PRA--LAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH--ENTEVTKSALLCIQR 90 (103)
Q Consensus 16 ~en~~~llk~L~~lL~~s~d-~~~--laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQk 90 (103)
+++--.++-.+.+.+.+++- +.+ .-=+..=||++++.. |..+-. +-.+||..+.+ +.|+++..|+.|---
T Consensus 6 ~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~--g~~i~~---a~pQI~acL~saL~~~eL~~~al~~W~~ 80 (107)
T smart00802 6 KDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLM--GKHISS---ALPQIMACLQSALEIPELRSLALRCWHV 80 (107)
T ss_pred HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHH--HHHHHH---HHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34444556666666643331 111 122455688999864 544443 45689999976 699999999999766
Q ss_pred Hh
Q 034103 91 LF 92 (103)
Q Consensus 91 lm 92 (103)
++
T Consensus 81 ~i 82 (107)
T smart00802 81 LI 82 (107)
T ss_pred HH
Confidence 65
No 93
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=44.28 E-value=43 Score=24.69 Aligned_cols=46 Identities=20% Similarity=0.485 Sum_probs=30.9
Q ss_pred eeehhcchHHHHHHHccch--------------------------hHHHHhhC-hHHHHHhhh-cCCCHHhHHH
Q 034103 38 ALAVACFDLSQFIQYHPAG--------------------------RVIVTDLK-AKERVMKLM-NHENTEVTKS 83 (103)
Q Consensus 38 ~laVAc~Dige~vr~~P~g--------------------------r~il~~lg-~K~~vM~Lm-~h~d~eVr~e 83 (103)
+-.|.||.++.|=|..... -..++.|| +|..+...| .||||+|...
T Consensus 48 i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltLiPQCp~~~C~afi~sLGCCk~ALl~F~KRHPNP~iA~~ 121 (140)
T PF10952_consen 48 ISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTLIPQCPNTECEAFIDSLGCCKKALLDFMKRHPNPEIARL 121 (140)
T ss_pred HHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHhccCCCCcchHHHHHhhhccHHHHHHHHHhCCCHHHHHH
Confidence 3457899999887765432 23355666 566677777 4888888654
No 94
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=44.09 E-value=6.6 Score=29.31 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=27.4
Q ss_pred HHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHH
Q 034103 50 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALL 86 (103)
Q Consensus 50 vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~ 86 (103)
.|.|.-|-+||.+||++. |.||+++ | -||.||.
T Consensus 124 ~R~yGiGAQIL~dLGV~~--~rLLtn~-~-~k~~~L~ 156 (191)
T TIGR00505 124 ERDFSLCADILEDLGVKK--VRLLTNN-P-KKIEILK 156 (191)
T ss_pred ceehhHHHHHHHHcCCCE--EEECCCC-H-HHHHHHH
Confidence 688888999999999986 7999884 3 4888885
No 95
>PF05536 Neurochondrin: Neurochondrin
Probab=43.99 E-value=58 Score=28.21 Aligned_cols=71 Identities=21% Similarity=0.199 Sum_probs=51.8
Q ss_pred HHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+-.|.+++.++++..++.=++.=|.-++ -+|.|+..+-+-|+=..+.+.+.+ .+...-.|+..++.++..-
T Consensus 100 IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~ 170 (543)
T PF05536_consen 100 IPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNLLLNLLSRL 170 (543)
T ss_pred HHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhc
Confidence 4466777765555344333333355556 899999999999999999999888 7777888999888888643
No 96
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=43.89 E-value=12 Score=32.46 Aligned_cols=24 Identities=25% Similarity=0.635 Sum_probs=19.5
Q ss_pred hcchHHHHHHHccchhHHHHhhChH
Q 034103 42 ACFDLSQFIQYHPAGRVIVTDLKAK 66 (103)
Q Consensus 42 Ac~Dige~vr~~P~gr~il~~lg~K 66 (103)
-.+|+..|++.||.|. ++....|+
T Consensus 127 kVYDvT~fl~~HPGG~-~i~~~aG~ 150 (526)
T PLN03198 127 KVYDVSDFAAEHPGGS-VISTYFGR 150 (526)
T ss_pred EEEecHHHHHhCCCch-HHHHhcCC
Confidence 4699999999999998 66555555
No 97
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=43.49 E-value=88 Score=25.59 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=46.1
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHH-HhhC-hHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV-TDLK-AKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il-~~lg-~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
++.+|.+-...+++. .-....-=++..+++.| +.++ .+++ .=..+.+-++-+|++|+..||.++.-++..+
T Consensus 324 ~~p~L~~~~~~~~~~-~k~~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 324 VLPKLLEGFKEADDE-IKSNYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred HHHHHHHHHhhcChh-hHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 355555555444432 33333445778899999 3444 3332 3344566668899999999999999998766
No 98
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.11 E-value=58 Score=29.38 Aligned_cols=78 Identities=15% Similarity=0.307 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcc-CCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch-hhh
Q 034103 21 QILRVLLTILDT-SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA-KYA 98 (103)
Q Consensus 21 ~llk~L~~lL~~-s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~-~~~ 98 (103)
+++-.|+++|.. ..|...++=..+-..+|++|-...+-++.+-..-.-+..||...|.+||.=-=-|+--+-.+. +|.
T Consensus 590 ~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWA 669 (791)
T KOG1222|consen 590 KLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWA 669 (791)
T ss_pred ccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHH
Confidence 577789999964 245555555678889999995555555555555577889999999999986555544333333 554
No 99
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=42.88 E-value=18 Score=24.48 Aligned_cols=31 Identities=29% Similarity=0.439 Sum_probs=23.0
Q ss_pred hCcHHHHHHHHHHhccCCCcc-----------eeehhcchHH
Q 034103 17 ENDFQILRVLLTILDTSSDPR-----------ALAVACFDLS 47 (103)
Q Consensus 17 en~~~llk~L~~lL~~s~d~~-----------~laVAc~Dig 47 (103)
.+|-+.+..+.+-|+...|.. .|+|||||.-
T Consensus 44 ~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ac~~~~ 85 (91)
T cd05024 44 QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLIACNDYY 85 (91)
T ss_pred CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 346778888888887766653 4889999864
No 100
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=42.84 E-value=32 Score=22.98 Aligned_cols=30 Identities=13% Similarity=0.234 Sum_probs=25.9
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhcchh
Q 034103 67 ERVMKLMNHENTEVTKSALLCIQRLFLGAK 96 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~~~~ 96 (103)
..+|+.++++.+-||-+||..+.+++.++.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~ 35 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS 35 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC
Confidence 467888999999999999999999987664
No 101
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=42.48 E-value=17 Score=27.96 Aligned_cols=56 Identities=16% Similarity=0.235 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHhccC-CCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCC
Q 034103 19 DFQILRVLLTILDTS-SDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHEN 77 (103)
Q Consensus 19 ~~~llk~L~~lL~~s-~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d 77 (103)
-+++-+.|.+++.+. .|..++-||+-|+.++.+.-|.| ..-+++ -..+++.|...|
T Consensus 156 ~~~lG~aL~~~i~~~~~d~rV~iIaSGdlSH~l~~~~~g-~~~~~f--D~~~~~~l~~~d 212 (271)
T cd07359 156 CYALGRALRRAIESFPGDLRVAVLGTGGLSHWPGGPRHG-EINEEF--DREFLDLLERGD 212 (271)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEecCcccCCCCCcccc-ccCHHH--HHHHHHHHHhCC
Confidence 356777788877554 58889999999999987665544 122332 245555555444
No 102
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=42.42 E-value=69 Score=18.63 Aligned_cols=42 Identities=26% Similarity=0.238 Sum_probs=32.7
Q ss_pred HHccchhHHHHhhChHHHHHhhhcC-CCHHhHHHHHHHHHHHh
Q 034103 51 QYHPAGRVIVTDLKAKERVMKLMNH-ENTEVTKSALLCIQRLF 92 (103)
Q Consensus 51 r~~P~gr~il~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQklm 92 (103)
+..|-...++.+-|+-..|..|-.| +|++|+..|=.=+++|.
T Consensus 7 ~~l~it~~~L~~T~IGk~V~~l~k~~~~~~i~~~A~~Li~~Wk 49 (53)
T PF08711_consen 7 EKLPITVELLKSTGIGKAVNKLRKHSENPEIRKLAKELIKKWK 49 (53)
T ss_dssp HCSS-SHHHHHHHSHHHHHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHhCChhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 4466678888888888889999999 99999999877777664
No 103
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.15 E-value=48 Score=30.72 Aligned_cols=66 Identities=30% Similarity=0.401 Sum_probs=48.0
Q ss_pred HHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcchhhhhhh
Q 034103 26 LLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFL 101 (103)
Q Consensus 26 L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~~~~~~~ 101 (103)
+.+.|. |++.-=..||..=|..|+-.- -.|++. ..||.||+|.-|=||+.|...+.|+.+ +|=.++
T Consensus 114 ~rkdl~-S~n~ye~giAL~GLS~fvTpd-LARDLa------~Dv~tLL~sskpYvRKkAIl~lykvFL--kYPeAl 179 (877)
T KOG1059|consen 114 LRKDLN-SSNVYEVGLALSGLSCIVTPD-LARDLA------DDVFTLLNSSKPYVRKKAILLLYKVFL--KYPEAL 179 (877)
T ss_pred HHHHhc-cCccchhhheecccccccCch-hhHHHH------HHHHHHHhcCchHHHHHHHHHHHHHHH--hhhHhH
Confidence 334453 566555688888888887542 244443 569999999999999999999999987 344443
No 104
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=42.03 E-value=1.1e+02 Score=21.67 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=40.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHH----hhhc-C--CCHHhHHHHHHHHHHHh
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVM----KLMN-H--ENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM----~Lm~-h--~d~eVr~eAL~avQklm 92 (103)
+.+|.|.+=|..+.||.+.--|..=|-..|+.. |..+-.+..-|+.+= .+++ . .+.+||...|.-+|.|=
T Consensus 38 ~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNC--G~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~ 114 (141)
T cd03565 38 DAVRALKKRLNGNKNHKEVMLTLTVLETCVKNC--GHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWA 114 (141)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHH
Confidence 344444444432345554444555566677777 766666654444332 3333 2 34699999999998875
No 105
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=41.95 E-value=56 Score=24.36 Aligned_cols=73 Identities=19% Similarity=0.296 Sum_probs=45.1
Q ss_pred HHHHHHHHHhccCC-CcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 21 QILRVLLTILDTSS-DPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~-d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
.-+++.+.+...+. |+.++-.|..=|=..|-..|.+...+++-=-=+++...+...|++++-.|+-=+=.|..
T Consensus 58 ~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 58 SFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 45788888886554 77777666666666666666655555442112344455555777777777655544443
No 106
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=41.69 E-value=15 Score=31.65 Aligned_cols=69 Identities=13% Similarity=0.173 Sum_probs=49.3
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+.++|+++|+ +.+..+..=|.--+|-.|.--..--.++-..|+=...-.|++|+-+.+|+||--++.-+
T Consensus 286 ~~~RLvElLs-~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNI 354 (526)
T COG5064 286 IPGRLVELLS-HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNI 354 (526)
T ss_pred CcHHHHHHhc-CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeeccc
Confidence 4578999994 45556666666666666654444445666678888888899999999999997665443
No 107
>KOG2090 consensus Metalloendopeptidase family - mitochondrial intermediate peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=41.00 E-value=34 Score=30.98 Aligned_cols=44 Identities=25% Similarity=0.357 Sum_probs=32.5
Q ss_pred chHHHHHHH-ccchhHHHHhhChHHHHHhhhcCCCHHhH-HHHHHH
Q 034103 44 FDLSQFIQY-HPAGRVIVTDLKAKERVMKLMNHENTEVT-KSALLC 87 (103)
Q Consensus 44 ~Dige~vr~-~P~gr~il~~lg~K~~vM~Lm~h~d~eVr-~eAL~a 87 (103)
=|++||||- ||+-..+-..-.+-.-+.++|++=|.++- |+||++
T Consensus 98 ~DLaEfvR~aHPd~~fv~aAe~a~~~~~e~ve~LNTn~~LY~~Lk~ 143 (704)
T KOG2090|consen 98 ADLAEFVRQAHPDPEFVEAAEEACRSMFELVESLNTNVALYQKLKK 143 (704)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 399999995 66665555555688889999998777765 666664
No 108
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=40.93 E-value=27 Score=31.85 Aligned_cols=23 Identities=17% Similarity=0.262 Sum_probs=19.5
Q ss_pred ehhcchHHHHHHHccchhHHHHh
Q 034103 40 AVACFDLSQFIQYHPAGRVIVTD 62 (103)
Q Consensus 40 aVAc~Dige~vr~~P~gr~il~~ 62 (103)
..+=-||.|.++|||....|+.+
T Consensus 628 vL~KkdLneil~~YP~sq~iLrk 650 (815)
T KOG0499|consen 628 VLDKKDLNEILVHYPDSQRILRK 650 (815)
T ss_pred EecHhHHHHHHHhCccHHHHHHH
Confidence 34456999999999999999977
No 109
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=40.78 E-value=12 Score=27.29 Aligned_cols=35 Identities=29% Similarity=0.316 Sum_probs=22.1
Q ss_pred HHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHH
Q 034103 49 FIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 49 ~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
=.|.|.-|-+|+.+||++. |.||++ ||. |+.||..
T Consensus 124 d~R~ygigaqIL~dLGV~~--~rLLtn-np~-k~~~L~g 158 (169)
T PF00925_consen 124 DLRDYGIGAQILRDLGVKK--MRLLTN-NPR-KYVALEG 158 (169)
T ss_dssp ----THHHHHHHHHTT--S--EEEE-S--HH-HHHHHHH
T ss_pred ccccHHHHHHHHHHcCCCE--EEECCC-Chh-HHHHHhc
Confidence 3577888999999999884 688877 444 8888865
No 110
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=40.59 E-value=53 Score=29.72 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHH---ccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQY---HPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~---~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
-.++..|+++|+ +++.. +.+.-+ .|.+. +++.|..+.+.|+=+++..|+.++++++.-.||..+.-+
T Consensus 289 ~~iV~~Lv~~Ld-r~n~e---llil~v-~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NL 358 (708)
T PF05804_consen 289 KGIVSLLVKCLD-RENEE---LLILAV-TFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNL 358 (708)
T ss_pred cCCHHHHHHHHc-CCCHH---HHHHHH-HHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 456777888885 33332 222222 34443 457899999999999999999999999999999876544
No 111
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=40.36 E-value=39 Score=23.41 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=21.9
Q ss_pred HHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 69 VMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 69 vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
|+.-|.|+||.|.+.||.-+-.+|-|-
T Consensus 42 L~krl~~~n~~vql~AL~lLd~~vkNc 68 (133)
T cd03561 42 IRKKIKYGNPHVQLLALTLLELLVKNC 68 (133)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHhC
Confidence 344467899999999999998888665
No 112
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=40.32 E-value=1.1e+02 Score=22.88 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=51.5
Q ss_pred HHHHcHHhhhhCcHHHHHHHHHHhccC---CCc--ceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhH
Q 034103 7 FWRDNITNFEENDFQILRVLLTILDTS---SDP--RALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVT 81 (103)
Q Consensus 7 FW~ENa~kf~en~~~llk~L~~lL~~s---~d~--~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr 81 (103)
||..=.-.=-|+---+.|+|+-+=.+. .|| .++|++|.+..+.+- +|+|+-++. ..|.-|-..+-++--
T Consensus 9 ywlarml~~GeDp~~i~RRL~i~AsEDIGlAdP~Al~~a~aa~~a~~~iG-~PE~~i~La-----~aviyLa~apKSns~ 82 (168)
T PF12002_consen 9 YWLARMLEGGEDPRFIARRLIIIASEDIGLADPQALSIAVAAYQAVERIG-MPEARIPLA-----QAVIYLALAPKSNSA 82 (168)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHCTGGGSTCHHHHHHHHHHHHHHH--CCCCHHHHH-----HHHHHHHHS----HH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHHHHHHC-CcHHHHHHH-----HHHHHHHhcccccHH
Confidence 555433333345566778887774221 345 467889999998876 899998883 356667777878888
Q ss_pred HHHHHHHHHHhcc
Q 034103 82 KSALLCIQRLFLG 94 (103)
Q Consensus 82 ~eAL~avQklm~~ 94 (103)
|.|+....+.+-+
T Consensus 83 y~a~~~A~~~v~~ 95 (168)
T PF12002_consen 83 YLAINKAKEDVKE 95 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777654
No 113
>KOG2374 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.31 E-value=80 Score=28.27 Aligned_cols=68 Identities=24% Similarity=0.322 Sum_probs=48.0
Q ss_pred HHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
|-.|++=|.+|..+.+=.+..--|...|++..+- ++ .+-+.+|++|+|+-.+|||-+|+-+-.+.++.
T Consensus 8 l~~lIeelT~sg~~~~~p~~~k~lkkiv~~sdee---~~--~~~~~L~~~~~~~h~~vR~l~lqii~elF~rs 75 (661)
T KOG2374|consen 8 LIGLIEELTKSGAQEVDPRLLKALKKIVRYSDEE---VR--LSSQTLMELMRHNHSQVRYLTLQIIDELFMRS 75 (661)
T ss_pred HHHHHHHHhhcCCcccChHHHHHHHHHHhccHHH---HH--HHHHHHHHHHhhcCchHHHHHHHHHHHHHHhh
Confidence 3345555556766666566666666777666432 22 25578999999999999999999988777665
No 114
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=39.37 E-value=1.1e+02 Score=21.25 Aligned_cols=45 Identities=22% Similarity=0.358 Sum_probs=30.4
Q ss_pred hHHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 45 DLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 45 Dige~vr~~P~g-r~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+|.+.|+.-|.| +..+.. |..=+.|+||.|.+.||.-+-.+|-|-
T Consensus 28 ~icD~i~~~~~~~kea~~~------l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 28 EICDLINSSPDGAKEAARA------LRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp HHHHHHHTSTTHHHHHHHH------HHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCccHHHHHHH------HHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 466666666543 333332 333467899999999999888888654
No 115
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=38.75 E-value=53 Score=26.47 Aligned_cols=52 Identities=31% Similarity=0.394 Sum_probs=35.4
Q ss_pred HHHHcHHhh--hhCcHH-HHHHHHHHhcc-CCCc-------------ceeehhcchHHHHHHHccchhH
Q 034103 7 FWRDNITNF--EENDFQ-ILRVLLTILDT-SSDP-------------RALAVACFDLSQFIQYHPAGRV 58 (103)
Q Consensus 7 FW~ENa~kf--~en~~~-llk~L~~lL~~-s~d~-------------~~laVAc~Dige~vr~~P~gr~ 58 (103)
+|..|.... .++.++ .++....+|.- +.|| .+-.||.+|+.-|++|+|++..
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 566776653 455544 34455555543 6676 4678999999999999998654
No 116
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=38.50 E-value=47 Score=31.79 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=57.0
Q ss_pred hCcHHHHHHHHHHhccC-CCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 17 ENDFQILRVLLTILDTS-SDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 17 en~~~llk~L~~lL~~s-~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+.+..+..+|+.=+.++ ++..+...|.==+||+=|+.| ..-..+.+..|.+-.+|++++||..|=.|+..+=+.|
T Consensus 813 ~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~----~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgn 888 (1233)
T KOG1824|consen 813 QKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKD----LSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGN 888 (1233)
T ss_pred ccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCC----CCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCc
Confidence 45556666776666543 233444556667888755443 3344578889999999999999999999999998855
Q ss_pred --hhhhhh
Q 034103 96 --KYASFL 101 (103)
Q Consensus 96 --~~~~~~ 101 (103)
+|+-|+
T Consensus 889 l~~yLpfi 896 (1233)
T KOG1824|consen 889 LPKYLPFI 896 (1233)
T ss_pred hHhHHHHH
Confidence 676543
No 117
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=38.39 E-value=48 Score=27.77 Aligned_cols=27 Identities=15% Similarity=0.070 Sum_probs=21.0
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 65 AKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+...+...+.++|++||..|+-++..+
T Consensus 179 a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 179 SESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 334455678999999999999887554
No 118
>PF09984 DUF2222: Uncharacterized signal transduction histidine kinase domain (DUF2222); InterPro: IPR019247 This entry is found at the N terminus of various BarA-like signal transduction histidine kinases. These proteins are involved in the regulation of carbon metabolism via the csrA/csrB regulatory system. The role of this domain has not, as yet, been established. ; GO: 0004673 protein histidine kinase activity
Probab=38.18 E-value=27 Score=25.49 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=25.7
Q ss_pred hhhCcHHHHHHHHHHhccCCCcceeehhcchHH
Q 034103 15 FEENDFQILRVLLTILDTSSDPRALAVACFDLS 47 (103)
Q Consensus 15 f~en~~~llk~L~~lL~~s~d~~~laVAc~Dig 47 (103)
+..+|-+.+++|+..+-...-+.|-+||.+|-.
T Consensus 30 l~~~nre~l~rLi~~~hr~~S~~VrsIaiFD~~ 62 (146)
T PF09984_consen 30 LTFNNRESLRRLISAAHRRHSPIVRSIAIFDAN 62 (146)
T ss_pred HhhcCHHHHHHHHHHHHHhCCCceEEEEEEcCC
Confidence 356789999999999865555678888888853
No 119
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.91 E-value=46 Score=31.73 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=22.9
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 65 AKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+=..|...++.+.|.|||-|+.|+..+=
T Consensus 390 Il~~Vl~~l~DphprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 390 ILPIVLNGLNDPHPRVRYAALNAIGQMS 417 (1075)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHhhh
Confidence 3455667789999999999999998764
No 120
>PRK13342 recombination factor protein RarA; Reviewed
Probab=37.79 E-value=88 Score=25.56 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhccC---CCc--ceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034103 20 FQILRVLLTILDTS---SDP--RALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 20 ~~llk~L~~lL~~s---~d~--~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
-.+.++|+.+..+. .|| ..+|++|.+-.+.+- +|+|+-++.+ .++.|-..|-++--|.|+......+-+
T Consensus 264 ~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g-~pe~~~~l~~-----~~~~l~~~pksn~~~~a~~~a~~~~~~ 337 (413)
T PRK13342 264 LFIARRLVIIASEDIGLADPNALQVAVAAADAVERIG-MPEGRIALAQ-----AVIYLALAPKSNAAYTAINAALADVRE 337 (413)
T ss_pred HHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhC-CcHHHHHHHH-----HHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 35666766665321 344 567888888888886 7999998865 455677888888899999888887754
Q ss_pred h
Q 034103 95 A 95 (103)
Q Consensus 95 ~ 95 (103)
.
T Consensus 338 ~ 338 (413)
T PRK13342 338 G 338 (413)
T ss_pred c
Confidence 3
No 121
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=35.89 E-value=77 Score=22.76 Aligned_cols=65 Identities=28% Similarity=0.341 Sum_probs=40.6
Q ss_pred HHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChH--HHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034103 23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K--~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+..|...|. +.||.+=.-|+.=|.+++..-. + +..+. ..++.++..+|++||-.|..++..+...
T Consensus 27 ~~~l~~~L~-D~~~~VR~~al~~Ls~Li~~d~-----i-k~k~~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 27 LPNLYKCLR-DEDPLVRKTALLVLSHLILEDM-----I-KVKGQLFSRILKLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHHcCc-----e-eehhhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 445555663 4455555555555555543321 0 11222 4667788999999999999999998866
No 122
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=35.71 E-value=30 Score=27.30 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=24.2
Q ss_pred HHHHhhhcCC--CHHhHHHHHHHHHHHhcch
Q 034103 67 ERVMKLMNHE--NTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 67 ~~vM~Lm~h~--d~eVr~eAL~avQklm~~~ 95 (103)
.-++-++.|+ .++||.+|+.++.+++..+
T Consensus 207 ~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~ 237 (339)
T PF12074_consen 207 QAFIYLLCSSNVSWKVRRAALSALKKLYASN 237 (339)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHhC
Confidence 4566667777 8999999999999998877
No 123
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=35.38 E-value=74 Score=18.66 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=21.5
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 65 AKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
.|-.|++.|.+++++.|-+-+.++..++
T Consensus 8 LKNvl~~fl~~~~~~~~~~llpvi~tlL 35 (46)
T PF01465_consen 8 LKNVLLQFLESREPSEREQLLPVIATLL 35 (46)
T ss_dssp HHHHHHHHHTTSS---HHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHHH
Confidence 4778999999999999999888888776
No 124
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=34.18 E-value=57 Score=26.09 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=44.9
Q ss_pred HcHHhhhhCcHHHHHHHHHHhccCC--CcceeehhcchHHHHHHHccchhHHHHhhCh
Q 034103 10 DNITNFEENDFQILRVLLTILDTSS--DPRALAVACFDLSQFIQYHPAGRVIVTDLKA 65 (103)
Q Consensus 10 ENa~kf~en~~~llk~L~~lL~~s~--d~~~laVAc~Dige~vr~~P~gr~il~~lg~ 65 (103)
+...+|-+.+-+++-.|+++|.-++ ...+.+.|..=|..++++.+.+..|+..+|+
T Consensus 254 ~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~ 311 (329)
T PF06012_consen 254 QFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGA 311 (329)
T ss_pred HHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcC
Confidence 4566777788889999999995432 2245677888899999999999999999986
No 125
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=33.90 E-value=24 Score=27.65 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.3
Q ss_pred HHHHHhhhcCCCHHhHHHH
Q 034103 66 KERVMKLMNHENTEVTKSA 84 (103)
Q Consensus 66 K~~vM~Lm~h~d~eVr~eA 84 (103)
-.++..|..|+|+|||-+.
T Consensus 235 ~~~l~~l~~h~d~ev~~~v 253 (254)
T PF04826_consen 235 AKKLQALANHPDPEVKEQV 253 (254)
T ss_pred HHHHHHHHcCCCHHHhhhc
Confidence 3567789999999999753
No 126
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.66 E-value=16 Score=30.73 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=27.9
Q ss_pred HHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHH
Q 034103 50 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 50 vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
.|.|.-|-+|+..||++. |.||++ ||+ |+.||..
T Consensus 332 ~Rdyg~gaqIL~~LGv~~--irLLTn-np~-K~~~L~~ 365 (402)
T PRK09311 332 ARDYGIGAQILVDLGVRS--MRLLTN-NPR-KIAGLQG 365 (402)
T ss_pred ceehhHHHHHHHHcCCCE--EEECCC-CHH-HHHHHhh
Confidence 678888999999999975 688987 565 9999864
No 127
>KOG0536 consensus Flavohemoprotein b5+b5R [Energy production and conversion]
Probab=33.23 E-value=16 Score=27.02 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=33.8
Q ss_pred CCcceeeh--hcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHH
Q 034103 34 SDPRALAV--ACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALL 86 (103)
Q Consensus 34 ~d~~~laV--Ac~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~ 86 (103)
.|..+++| -.+|+..|.++||.|-+.|-+.-+++.. .+.+.--.=|.||+|+
T Consensus 81 ~dDcW~~i~G~VYnVt~Yl~fHPgG~d~lmk~aGrD~T-~~Fnk~H~WVN~e~LL 134 (145)
T KOG0536|consen 81 KDDCWIAIRGKVYNVTAYLDFHPGGVDELMKHAGRDAT-KLFNKYHAWVNYEELL 134 (145)
T ss_pred ccceEEEEcCEEEecccccccCCCCHHHHHHhcCcchH-HHHHHHHHHhcHHHHH
Confidence 45577776 4799999999999999888766555522 2333223345555554
No 128
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=33.03 E-value=1.1e+02 Score=21.97 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=20.6
Q ss_pred hhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 71 KLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 71 ~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.-|.|+||.|.+.||.-+..+|-|-
T Consensus 44 KRl~~~n~~v~l~AL~LLe~~vkNC 68 (144)
T cd03568 44 KRLNHKDPNVQLRALTLLDACAENC 68 (144)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 3357899999999999998888554
No 129
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=32.93 E-value=84 Score=28.31 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=49.5
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhh-ChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL-KAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
++-|.|+-+|.....|.++.=..-=++-+|..-|.-+--+.-+ ..=..|-.++.|+|+.|+--||.-+..+++..
T Consensus 106 ~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 106 ELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 5567777787644344433322333778888888766433322 22334566789999999999999988888765
No 130
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=32.91 E-value=17 Score=30.45 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=28.0
Q ss_pred HHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHH
Q 034103 50 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 50 vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
.|.|.-|-+|+.+||++. |.||++ || -|+.||..
T Consensus 313 ~RdygigAqIL~dLGV~~--irLLTN-np-~K~~~L~~ 346 (387)
T PRK09318 313 ERDYAAAFQILKALGIEK--VRLLTN-NP-RKTKALEK 346 (387)
T ss_pred ceeeeHHHHHHHHcCCCE--EEECCC-CH-HHHHHHHh
Confidence 688888999999999975 699987 44 48888864
No 131
>TIGR03652 FeS_repair_RIC iron-sulfur cluster repair di-iron protein. Members of this protein family, designated variously as YftE, NorA, DrnN, and NipC, are di-iron proteins involved in the repair of iron-sulfur clusters. Previously assigned names reflect pleiotropic effects of damage from NO or other oxidative stress when this protein is mutated. The suggested name now is RIC, for Repair of Iron Centers.
Probab=32.85 E-value=31 Score=25.93 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=17.3
Q ss_pred HHHHHHHccchhHHHHhhC
Q 034103 46 LSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 46 ige~vr~~P~gr~il~~lg 64 (103)
||++|+.||+...|+.++|
T Consensus 1 i~eiv~~~p~~~~vf~~~g 19 (216)
T TIGR03652 1 VGEIVTEIPRAARIFRKYG 19 (216)
T ss_pred ChHHHHhCccHHHHHHHcC
Confidence 6899999999999999976
No 132
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=32.64 E-value=45 Score=24.97 Aligned_cols=33 Identities=33% Similarity=0.511 Sum_probs=20.2
Q ss_pred hhhCcHHHHHHHHHHhccCCCcceeehhcchHH
Q 034103 15 FEENDFQILRVLLTILDTSSDPRALAVACFDLS 47 (103)
Q Consensus 15 f~en~~~llk~L~~lL~~s~d~~~laVAc~Dig 47 (103)
|.++.+.-.+...+-|.....|.++.|+|-|=.
T Consensus 5 f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsR 37 (190)
T cd00884 5 FRKEYFPEERELFEKLAKGQSPKALFIACSDSR 37 (190)
T ss_pred HHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCC
Confidence 333333333344444446789999999999843
No 133
>PF10231 DUF2315: Uncharacterised conserved protein (DUF2315); InterPro: IPR018796 This entry consists of small conserved proteins found from worms to humans. Their function is not known.
Probab=32.54 E-value=56 Score=23.37 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=29.5
Q ss_pred hHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHc
Q 034103 5 PLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~ 53 (103)
..||.++-..|.+..-+-+... -|.+ +....-.+-+.|+++|=|.+
T Consensus 44 q~FW~~~N~~F~~~K~~fi~~~--~l~~-~~g~~~~l~a~~mseFYk~F 89 (126)
T PF10231_consen 44 QEFWAKHNIRFSKEKEEFIESR--QLRK-ESGRKQELSADEMSEFYKEF 89 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh--hccc-cCCCCCCCCHHHHHHHHHHH
Confidence 5799999999976655555543 2211 12222345788999997765
No 134
>PRK00782 hypothetical protein; Provisional
Probab=32.03 E-value=50 Score=25.70 Aligned_cols=51 Identities=4% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHH
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTE 79 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~e 79 (103)
++.+.|.+.++. .|+.++-|+..|+.+|.. +...+++. .++|+.+..-|++
T Consensus 155 ~lg~~L~~~~~~-~~~~vliIaSsDlSH~~~-----~~~a~~~D--~~~i~~I~~~d~~ 205 (267)
T PRK00782 155 EVGEAIAEAIEE-LGKKVVVIASSDFTHYEP-----AERAKEKD--MILIEAILDLDVD 205 (267)
T ss_pred HHHHHHHHHHHh-cCCCEEEEEeCCCcCcCC-----HHHHHHHH--HHHHHHHHcCCHH
Confidence 455555555533 367899999999998643 23344433 5677777766643
No 135
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.84 E-value=67 Score=31.17 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=51.3
Q ss_pred cceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCC-CHHhHHHHHHHHHHHhcc
Q 034103 36 PRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE-NTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 36 ~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~~ 94 (103)
|..-++|++=|+.||+.||.|..-+-+.+.-..-.+.|+.+ .|=.|-....|+.+|-.+
T Consensus 571 ~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d 630 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWED 630 (1387)
T ss_pred HHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhh
Confidence 46678999999999999999999998877777888888884 799999999999998754
No 136
>KOG4576 consensus Sulfite oxidase, heme-binding component [Energy production and conversion]
Probab=31.73 E-value=17 Score=27.26 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=21.7
Q ss_pred eeehhcchHHHHHHHccchhHHHHhhC
Q 034103 38 ALAVACFDLSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 38 ~laVAc~Dige~vr~~P~gr~il~~lg 64 (103)
+..-..+|+.+||..+|.|-+|+-.-|
T Consensus 100 Tyg~gVyDVTdFv~~HPGGdKillAAG 126 (167)
T KOG4576|consen 100 TYGSGVYDVTDFVDLHPGGDKILLAAG 126 (167)
T ss_pred EecCcceeHHHHHHhCCCcceeeeecC
Confidence 455678999999999999988874444
No 137
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit).
Probab=31.49 E-value=22 Score=21.82 Aligned_cols=14 Identities=21% Similarity=0.036 Sum_probs=11.2
Q ss_pred ceeehhcchHHHHH
Q 034103 37 RALAVACFDLSQFI 50 (103)
Q Consensus 37 ~~laVAc~Dige~v 50 (103)
..+|..|||||...
T Consensus 31 ~~~a~LlHDig~~~ 44 (124)
T smart00471 31 LLLAALLHDIGKPG 44 (124)
T ss_pred HHHHHHHHcccCcc
Confidence 56788899999764
No 138
>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit. L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion
Probab=31.39 E-value=51 Score=22.46 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=11.6
Q ss_pred HHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 68 RVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 68 ~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
++++++.|.=|+-+-.++.+++.++
T Consensus 52 rl~~~tGh~ipD~~L~~~~T~~dl~ 76 (112)
T PF10501_consen 52 RLQQLTGHRIPDSKLHSIHTVGDLL 76 (112)
T ss_pred HHHHHHCCCCCcHHHHhcCCHHHHH
Confidence 3444444444444444444444443
No 139
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity []. These enzymes appear to be involved in the nucleic acid metabolism, signal transduction and possibly other functions in bacteria, archaea and eukaryotes. The fact that all the highly conserved residues in the HD superfamily are histidines or aspartates suggests that coordination of divalent cations is essential for the activity of these proteins [].; GO: 0008081 phosphoric diester hydrolase activity, 0046872 metal ion binding; PDB: 2CQZ_A 2Q14_C 3CCG_A 2PAU_A 2PAQ_B 2PAR_B 3BG2_A 3NQW_A 2QGS_B 2DQB_D ....
Probab=31.30 E-value=9.2 Score=24.13 Aligned_cols=14 Identities=14% Similarity=0.180 Sum_probs=11.6
Q ss_pred ceeehhcchHHHHH
Q 034103 37 RALAVACFDLSQFI 50 (103)
Q Consensus 37 ~~laVAc~Dige~v 50 (103)
..+|..+||||.+.
T Consensus 28 l~~aaLlHDiGk~~ 41 (122)
T PF01966_consen 28 LRIAALLHDIGKIP 41 (122)
T ss_dssp HHHHHHHTTTTHHS
T ss_pred HHHHHHHHhcCCCC
Confidence 45788899999887
No 140
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=31.28 E-value=51 Score=30.25 Aligned_cols=24 Identities=29% Similarity=0.549 Sum_probs=20.3
Q ss_pred HHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 69 VMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 69 vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
|-++++|+++.||+.|..||-++-
T Consensus 132 ik~~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 132 IKKLLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHccCCcHHHHHHHHHHHHHHH
Confidence 456678999999999999999887
No 141
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=30.34 E-value=74 Score=24.74 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.5
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 67 ERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..|..-+.|+|+.||..|++|+...-.-.
T Consensus 30 ~lI~P~v~~~~~~vR~~al~cLGl~~Lld 58 (298)
T PF12719_consen 30 SLILPAVQSSDPAVRELALKCLGLCCLLD 58 (298)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 55667789999999999999998765544
No 142
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=30.16 E-value=76 Score=30.50 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=52.3
Q ss_pred HcHHhhhh-CcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHH
Q 034103 10 DNITNFEE-NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCI 88 (103)
Q Consensus 10 ENa~kf~e-n~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~av 88 (103)
|-..|+-- +--.++=+|...+ .|.++.+-+.+..-+-.-+-..|+--+.+.+-. -.....++..||.+||..||.++
T Consensus 954 ECLGkL~l~epesLlpkL~~~~-~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~-ig~fl~~~~dpDl~VrrvaLvv~ 1031 (1233)
T KOG1824|consen 954 ECLGKLVLIEPESLLPKLKLLL-RSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQ-IGDFLKLLRDPDLEVRRVALVVL 1031 (1233)
T ss_pred HHhhhHHhCChHHHHHHHHHHh-cCCCcchhhhhhheeeeeecCCCCccCHHHHHH-HHHHHHHHhCCchhHHHHHHHHH
Confidence 33444422 2345666777776 466665555444444444555666655554422 23455678999999999999998
Q ss_pred HHHhcchh
Q 034103 89 QRLFLGAK 96 (103)
Q Consensus 89 Qklm~~~~ 96 (103)
--..-++|
T Consensus 1032 nSaahNKp 1039 (1233)
T KOG1824|consen 1032 NSAAHNKP 1039 (1233)
T ss_pred HHHHccCH
Confidence 87763334
No 143
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=30.08 E-value=1.2e+02 Score=24.25 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=42.0
Q ss_pred CcceeehhcchHHHHHHHccchh--HHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 35 DPRALAVACFDLSQFIQYHPAGR--VIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 35 d~~~laVAc~Dige~vr~~P~gr--~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
++.+++-|+.=-|-++-..|.++ ..++. .=.++++|+.++|.+||--|=.++-.+
T Consensus 199 ~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~--~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 199 DAALVAAALSAWALLLTTLPDSKLEDLLEE--ALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred ccHHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 35577778888888888888742 22332 567899999999999999998887655
No 144
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=30.02 E-value=1.9e+02 Score=20.42 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.0
Q ss_pred ehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034103 40 AVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 40 aVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.=..++|++..+..|.. +.+ +-+.++.=|++.+|-||+-||+.+..+...
T Consensus 19 gy~~~Eia~~t~~s~~~---~~e--i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~ 68 (122)
T cd03572 19 GYLYEEIAKLTRKSVGS---CQE--LLEYLLKRLKRSSPHVKLKVLKIIKHLCEK 68 (122)
T ss_pred hHHHHHHHHHHHcCHHH---HHH--HHHHHHHHhcCCCCcchHHHHHHHHHHHhh
Confidence 44566788877775443 222 224556667889999999999998877644
No 145
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=29.78 E-value=72 Score=26.37 Aligned_cols=56 Identities=20% Similarity=0.326 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHhccCC--CcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhc
Q 034103 19 DFQILRVLLTILDTSS--DPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN 74 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~--d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~ 74 (103)
+..++..|..|++... -+.+.+.|.+=+..||-.-|..-.++.+.|.-..+++-+.
T Consensus 104 ~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~ 161 (379)
T PF06025_consen 104 SSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAIT 161 (379)
T ss_pred hhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHh
Confidence 5889999999997543 3678999999999999999999999999999999988887
No 146
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=29.70 E-value=22 Score=29.63 Aligned_cols=38 Identities=29% Similarity=0.394 Sum_probs=23.0
Q ss_pred chHHHHHHHcc-------chhHHHHhhChHHHHHhhhcCCCHHhHHHH
Q 034103 44 FDLSQFIQYHP-------AGRVIVTDLKAKERVMKLMNHENTEVTKSA 84 (103)
Q Consensus 44 ~Dige~vr~~P-------~gr~il~~lg~K~~vM~Lm~h~d~eVr~eA 84 (103)
-||||+++.|| .||.+.+-++ |.-+| ....|+.+-+|+
T Consensus 166 q~l~eiiq~yPa~~~~ne~GK~v~~~~N-KyflM--~~e~d~~~~ke~ 210 (370)
T KOG3029|consen 166 QDLGEIIQMYPATSFFNEDGKEVNDILN-KYFLM--YREHDPGVSKET 210 (370)
T ss_pred CCHHHHHHhccccccccccccchhhcch-hheee--eeccCCCccccc
Confidence 58999999999 4666655433 65554 233343444333
No 147
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=29.34 E-value=1.8e+02 Score=26.61 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=51.7
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccch--hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch-hhh
Q 034103 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG--RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA-KYA 98 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~g--r~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~-~~~ 98 (103)
-+++|.+.+ ++-|+.+.+.+..=|...+=...+- .....+.+ +..|-.+.+.||+.|.-++++-+.-+.-+. +-+
T Consensus 462 gId~l~s~~-~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~-a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~sv 539 (678)
T KOG1293|consen 462 GIDILESML-TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIP-ANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSV 539 (678)
T ss_pred cHHHHHHHh-cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhh-HHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHH
Confidence 367788887 4678888988877665544333221 12223344 567788999999999999998877777664 344
Q ss_pred hh
Q 034103 99 SF 100 (103)
Q Consensus 99 ~~ 100 (103)
+|
T Consensus 540 df 541 (678)
T KOG1293|consen 540 DF 541 (678)
T ss_pred HH
Confidence 43
No 148
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=29.07 E-value=41 Score=21.81 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhC
Q 034103 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg 64 (103)
+..++..++++-+.++-..+-..|.+=||-+.+ -++|..+++++|
T Consensus 26 ~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 26 ESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred hcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 557899999998877777888888888987765 468999999887
No 149
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=29.00 E-value=20 Score=30.67 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=27.5
Q ss_pred HHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHH
Q 034103 50 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 50 vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
.|.|.-|-+|+.+||++. |+||++ || -|+.||..
T Consensus 366 ~RdygigAqIL~dLGI~~--irLLTN-Np-~K~~~L~~ 399 (450)
T PLN02831 366 SREYGIGAQILRDLGVRT--MRLMTN-NP-AKYTGLKG 399 (450)
T ss_pred ceehHHHHHHHHHcCCCE--EEECCC-CH-HHHHHHhh
Confidence 577888999999999876 789987 44 48888864
No 150
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=28.98 E-value=11 Score=27.93 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=26.0
Q ss_pred HHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHH
Q 034103 46 LSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQ 89 (103)
Q Consensus 46 ige~vr~~P~gr~il~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQ 89 (103)
-|+-++.||..+.|+..|.-+..-+..-+ .+.|++..++|..+.
T Consensus 40 ~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~ 84 (169)
T PF12689_consen 40 RGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLE 84 (169)
T ss_dssp T--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT
T ss_pred CCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcC
Confidence 68889999999999999865444455455 367888888877643
No 151
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=28.26 E-value=1.9e+02 Score=19.41 Aligned_cols=71 Identities=18% Similarity=0.284 Sum_probs=44.8
Q ss_pred hCcHHHHHHHHHHhcc---CCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcC--CCHHhHHHHHHHHHHH
Q 034103 17 ENDFQILRVLLTILDT---SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH--ENTEVTKSALLCIQRL 91 (103)
Q Consensus 17 en~~~llk~L~~lL~~---s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQkl 91 (103)
++=-.++-.+.+.|.. +.+..-.--+..=||++++. |+.-+.. +..+||..+.+ +.+++++.|+.|---+
T Consensus 7 ~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~---~~~~i~~--~~pQI~a~L~sal~~~~l~~~al~~W~~f 81 (107)
T PF08064_consen 7 PHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKL---GGSHISS--ARPQIMACLQSALEIPELREEALSCWNCF 81 (107)
T ss_pred HHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHH---hHHHHHH--HHHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 3334455555555543 22222333455668888884 3444443 56789999964 6889999999997766
Q ss_pred h
Q 034103 92 F 92 (103)
Q Consensus 92 m 92 (103)
+
T Consensus 82 i 82 (107)
T PF08064_consen 82 I 82 (107)
T ss_pred H
Confidence 5
No 152
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=27.94 E-value=70 Score=24.93 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=41.3
Q ss_pred eehhcchHHHHHH-HccchhHHHHhh--ChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 39 LAVACFDLSQFIQ-YHPAGRVIVTDL--KAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 39 laVAc~Dige~vr-~~P~gr~il~~l--g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
-+++.+.+..+|. +. ++.-+++. =.-.-++.|+.+.++++|.+++.+++.++.+-
T Consensus 93 ~~~~~~~l~w~v~~~~--~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~ 150 (282)
T PF10521_consen 93 PGLASHVLSWIVLSQL--DRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKV 150 (282)
T ss_pred CcccHHHHHHHHHhcC--CcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence 3566678888888 33 44444432 25677999999999999999999999999644
No 153
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=27.88 E-value=1.3e+02 Score=20.62 Aligned_cols=64 Identities=25% Similarity=0.347 Sum_probs=36.7
Q ss_pred HHHHHHHhccCC-CcceeehhcchHHHHHHHccc-hhHHHHhhChHHHHHhhhcC-------CCHHhHHHHHHHH
Q 034103 23 LRVLLTILDTSS-DPRALAVACFDLSQFIQYHPA-GRVIVTDLKAKERVMKLMNH-------ENTEVTKSALLCI 88 (103)
Q Consensus 23 lk~L~~lL~~s~-d~~~laVAc~Dige~vr~~P~-gr~il~~lg~K~~vM~Lm~h-------~d~eVr~eAL~av 88 (103)
+|-|++.|..++ |+...-.|..=.-.+||.-|. |..+-+- +.+.+..|++= .=++.|.+||.|+
T Consensus 5 lrDll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~--a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval 77 (114)
T PF10193_consen 5 LRDLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEY--AEELLKALLHLQNKFDIENFEELRQNALVAL 77 (114)
T ss_dssp HHHHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHH--HHHHHHHHHH---TT--TTTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHH--HHHHHHHHhhccccCCccCHHHHHHHHHHHH
Confidence 567777886444 788888888888999998886 5554443 44444445421 2357899998875
No 154
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=27.47 E-value=48 Score=25.27 Aligned_cols=36 Identities=28% Similarity=0.489 Sum_probs=22.6
Q ss_pred HcHHhhhhCcHHHHHHHHHHhccC-CCcceeehhcch
Q 034103 10 DNITNFEENDFQILRVLLTILDTS-SDPRALAVACFD 45 (103)
Q Consensus 10 ENa~kf~en~~~llk~L~~lL~~s-~d~~~laVAc~D 45 (103)
++..+|-++.+.--.....-|..+ .+|.++-|+|-|
T Consensus 9 ~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~D 45 (207)
T COG0288 9 AGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSD 45 (207)
T ss_pred HHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEcc
Confidence 455566544344444444444344 899999999999
No 155
>cd07320 Extradiol_Dioxygenase_3B_like Subunit B of Class III Extradiol ring-cleavage dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be further divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two-domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B. This model represents the catalytic subunit B of extradiol dioxygenase class
Probab=27.45 E-value=44 Score=25.14 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=36.6
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchHHHHHHHcc-----chhHHHHhhChHHHHHhhhcCCCHH
Q 034103 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHP-----AGRVIVTDLKAKERVMKLMNHENTE 79 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P-----~gr~il~~lg~K~~vM~Lm~h~d~e 79 (103)
-+++-+.|.+++. ..|..++-|+.-|+.++.+.+. ......+++ -..+++.|...|.+
T Consensus 143 ~~~lG~aL~~~~~-~~~~~vliI~SGdlsH~~~~~~~~~~~~~~~~~~ef--D~~~~~~l~~~d~~ 205 (260)
T cd07320 143 LFEFGKAIRAAVE-PSDLRVHVVASGDLSHQLQGDRPSSQSGYYPIAEEF--DKYVIDNLEELDPV 205 (260)
T ss_pred HHHHHHHHHHHHH-hcCCcEEEEEeCccccCCCCCCcccccCcCcchHHH--HHHHHHHHHcCCHH
Confidence 3556666777764 3467889999999999875441 111223333 36677777777655
No 156
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=27.35 E-value=2.4e+02 Score=24.02 Aligned_cols=80 Identities=11% Similarity=0.143 Sum_probs=57.4
Q ss_pred hhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchh-HHHHhh----ChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034103 15 FEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGR-VIVTDL----KAKERVMKLMNHENTEVTKSALLCIQ 89 (103)
Q Consensus 15 f~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr-~il~~l----g~K~~vM~Lm~h~d~eVr~eAL~avQ 89 (103)
+.++.-+.++.++.+|.+++++.++--.+.=|.++++..|.-- ...+.. ..=...+.+++++|.=|.-.|...+-
T Consensus 47 ~~~~~~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt 126 (429)
T cd00256 47 LDVLSGQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA 126 (429)
T ss_pred hcccHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence 3344478899999999877777776666677778888887533 333321 22345567889999999999999999
Q ss_pred HHhcc
Q 034103 90 RLFLG 94 (103)
Q Consensus 90 klm~~ 94 (103)
+++..
T Consensus 127 ~l~~~ 131 (429)
T cd00256 127 KLACF 131 (429)
T ss_pred HHHhc
Confidence 99854
No 157
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=27.14 E-value=1.2e+02 Score=27.81 Aligned_cols=42 Identities=10% Similarity=0.167 Sum_probs=28.1
Q ss_pred HHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 48 QFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 48 e~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+++.-+ |..+..+. .=..+..|..+++|+||..|.+.+++++
T Consensus 583 ~la~v~--g~ei~~~~-Llp~~~~l~~D~vanVR~nvak~L~~i~ 624 (759)
T KOG0211|consen 583 ELAEVL--GQEITCED-LLPVFLDLVKDPVANVRINVAKHLPKIL 624 (759)
T ss_pred HHHHHh--ccHHHHHH-HhHHHHHhccCCchhhhhhHHHHHHHHH
Confidence 555555 55555441 2245666777888888888888888877
No 158
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.06 E-value=2.3e+02 Score=24.87 Aligned_cols=74 Identities=18% Similarity=0.259 Sum_probs=58.9
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+|-|+++|.-.++..+.+-|..-+-.+.-.+...+.++..-|+-++..+|+-..--+|+-+-=-|+..+-.+.
T Consensus 334 fl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d 407 (550)
T KOG4224|consen 334 FLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND 407 (550)
T ss_pred chhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc
Confidence 46779999976666657676777777777778888899988999999999999998899988777776665443
No 159
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=27.01 E-value=26 Score=15.73 Aligned_cols=7 Identities=43% Similarity=1.217 Sum_probs=5.5
Q ss_pred CChHHHH
Q 034103 3 KDPLFWR 9 (103)
Q Consensus 3 ~se~FW~ 9 (103)
.+|=||+
T Consensus 3 ~~~CFWK 9 (12)
T PF02083_consen 3 KSECFWK 9 (12)
T ss_pred ccchhhh
Confidence 5788997
No 160
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.95 E-value=1.3e+02 Score=29.18 Aligned_cols=58 Identities=19% Similarity=0.304 Sum_probs=44.7
Q ss_pred hcchHHHHHHHccchhHHHHh--------hChHHHHHhhh----cCCCHHhHHHHHHHHHHHhcchhhhhhh
Q 034103 42 ACFDLSQFIQYHPAGRVIVTD--------LKAKERVMKLM----NHENTEVTKSALLCIQRLFLGAKYASFL 101 (103)
Q Consensus 42 Ac~Dige~vr~~P~gr~il~~--------lg~K~~vM~Lm----~h~d~eVr~eAL~avQklm~~~~~~~~~ 101 (103)
=|+|+.-|||.= .-+|..+ +|-...|.++. .+.+.=|||.|++-+.+++.++||.+-+
T Consensus 367 rl~Dvsa~vRsk--VLqv~~~l~~~~s~p~~~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pfs~~~ 436 (1251)
T KOG0414|consen 367 RLLDVSAYVRSK--VLQVFRRLFQQHSIPLGSRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPFSSEL 436 (1251)
T ss_pred HhhcccHHHHHH--HHHHHHHHHHccCCCccHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCchhhh
Confidence 478888888863 3334433 47778888886 5678999999999999999999998654
No 161
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.89 E-value=1.6e+02 Score=28.74 Aligned_cols=65 Identities=35% Similarity=0.456 Sum_probs=49.3
Q ss_pred HHHHHHHhccCCCcce---eehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 23 LRVLLTILDTSSDPRA---LAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~---laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+..|+.++++|.+|.+ +.|||-|++- .+|+=-.-.+ +-.++-+..+++.||.-|++.+.-||++.
T Consensus 962 l~llftimeksp~p~IRsN~VvalgDlav---~fpnlie~~T-----~~Ly~rL~D~~~~vRkta~lvlshLILnd 1029 (1251)
T KOG0414|consen 962 LPLLFTIMEKSPSPRIRSNLVVALGDLAV---RFPNLIEPWT-----EHLYRRLRDESPSVRKTALLVLSHLILND 1029 (1251)
T ss_pred HHHHHHHHhcCCCceeeecchheccchhh---hcccccchhh-----HHHHHHhcCccHHHHHHHHHHHHHHHHhh
Confidence 5568899988888864 7788888763 4565333222 45677788999999999999999999765
No 162
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=26.42 E-value=1.5e+02 Score=25.62 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=46.2
Q ss_pred CCcceeehhcchHHHHHHHcc--chhHHHH--hhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 34 SDPRALAVACFDLSQFIQYHP--AGRVIVT--DLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 34 ~d~~~laVAc~Dige~vr~~P--~gr~il~--~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+|..+...||.-||.++.... .--.|+. .-|.=..|...+..+|.+|...|..++..+-.-.
T Consensus 94 ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfp 159 (524)
T KOG4413|consen 94 DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFP 159 (524)
T ss_pred CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcH
Confidence 567788899999999999886 2223332 2245556777789999999999999998875433
No 163
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=26.37 E-value=95 Score=26.04 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=21.5
Q ss_pred hcCCCHHhHHHHHHHHHHHhcchhhh
Q 034103 73 MNHENTEVTKSALLCIQRLFLGAKYA 98 (103)
Q Consensus 73 m~h~d~eVr~eAL~avQklm~~~~~~ 98 (103)
...++++|..|||+|+--+|.+++-.
T Consensus 41 ~~~~~~~v~~EALKCL~N~lf~s~~a 66 (446)
T PF10165_consen 41 FESPDPDVSREALKCLCNALFLSPSA 66 (446)
T ss_pred ccCCChHHHHHHHHHHHHHHhCCHHH
Confidence 45679999999999999999887543
No 164
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=26.15 E-value=81 Score=23.97 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 69 VMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 69 vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+-.-|.+.|+.+|-.|+.++++++...
T Consensus 5 ~~k~LAs~d~~~R~~al~~l~~~l~~~ 31 (217)
T PF05997_consen 5 FAKKLASNDKKTRDRALKSLRKWLSKR 31 (217)
T ss_pred HHHHhhcCChhHHHHHHHHHHHHHHhc
Confidence 345688999999999999999999776
No 165
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=26.01 E-value=68 Score=24.08 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=43.9
Q ss_pred CCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhh-cCCCHHhHHHHHHHHHHHhcch-hhhhh
Q 034103 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM-NHENTEVTKSALLCIQRLFLGA-KYASF 100 (103)
Q Consensus 33 s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm-~h~d~eVr~eAL~avQklm~~~-~~~~~ 100 (103)
..|+..+ .|.+--+.|.+ ....-+...-+|.++ .++++.||-.|+.++..|+-.. +|+.+
T Consensus 16 ~~~~r~l------~~yW~~llP~~--~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~ 77 (182)
T PF13251_consen 16 STDKRSL------FGYWPALLPDS--VLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQ 77 (182)
T ss_pred hcCCcee------HhhHHHHCCCC--CCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHH
Confidence 3366655 58888889988 344445555566655 5789999999999999999776 67643
No 166
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=25.90 E-value=2.2e+02 Score=26.01 Aligned_cols=76 Identities=5% Similarity=0.115 Sum_probs=53.3
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.-++.-.|+++|..+ +..+-.++..=|.-+|=.|..=|.-.-..||-+.+-+++..+|+++|..++-.+.-+|=+.
T Consensus 417 ~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 417 RNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNC 492 (678)
T ss_pred cchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcc
Confidence 345666778887321 2233444555555566666655555556688899999999999999999999998888654
No 167
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=25.72 E-value=65 Score=22.63 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=19.7
Q ss_pred HHhhChHHHHHhhhcCCCHHhHHH
Q 034103 60 VTDLKAKERVMKLMNHENTEVTKS 83 (103)
Q Consensus 60 l~~lg~K~~vM~Lm~h~d~eVr~e 83 (103)
+-++|+=.-+..|++|+|.+|.-.
T Consensus 83 lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 83 LVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHcCCHHHHHHHHCCCCcceehc
Confidence 446788899999999999998643
No 168
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=25.63 E-value=1e+02 Score=20.68 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=32.6
Q ss_pred hhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHH
Q 034103 14 NFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERV 69 (103)
Q Consensus 14 kf~en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~v 69 (103)
-++|..|.-+.+|+..| -|.||.- +-.|-+.|.++.++.=-+.+
T Consensus 27 AL~EKGYnPinQivGYl-lSGDPaY-----------Itsh~nAR~lIr~~eRDell 70 (79)
T PF06135_consen 27 ALEEKGYNPINQIVGYL-LSGDPAY-----------ITSHNNARNLIRKIERDELL 70 (79)
T ss_pred HHHHcCCChHHHHHhhe-ecCCCcc-----------ccCcccHHHHHHHHhHHHHH
Confidence 46788888899999998 5889874 44677788888877633333
No 169
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=25.63 E-value=1.5e+02 Score=25.19 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=47.9
Q ss_pred hCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhH---HHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 17 ENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRV---IVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 17 en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~---il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
.+++.++..|.+-|+.+......+| =-=|+.++.+|+.-.. .-..+..+..+...+.+..+.+||=|++-....+-
T Consensus 410 ~~d~~li~~LF~sL~~~~~evr~sI-qeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an~~fp 488 (501)
T PF13001_consen 410 SKDLSLIEFLFDSLEDESPEVRVSI-QEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYANACFP 488 (501)
T ss_pred cccHHHHHHHHHHhhCcchHHHHHH-HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCC
Confidence 5679999999999954433333333 2225555555554222 33334445555566677889999999998887763
No 170
>KOG0869 consensus CCAAT-binding factor, subunit A (HAP3) [Transcription]
Probab=25.51 E-value=74 Score=24.13 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=29.0
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhcchhhhhhhh
Q 034103 67 ERVMKLMNHENTEVTKSALLCIQRLFLGAKYASFLQ 102 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~~~~~~~~~~ 102 (103)
.|||.-.--++..|.+.|=.|+|.-+. +|+||++
T Consensus 39 ~RIMK~~lP~naKIsKDAKE~vQECVS--EfISFvT 72 (168)
T KOG0869|consen 39 SRIMKKALPANAKISKDAKETVQECVS--EFISFVT 72 (168)
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHH--HHHHHHh
Confidence 567776677899999999999999986 7999875
No 171
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=25.49 E-value=1.6e+02 Score=20.88 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=19.8
Q ss_pred hhhcCCCHHhHHHHHHHHHHHhcc
Q 034103 71 KLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 71 ~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.-|.|+||.|...||.-+..+|-|
T Consensus 48 krl~~~n~~vql~AL~LLe~~vkN 71 (142)
T cd03569 48 KRLLSKNPNVQLYALLLLESCVKN 71 (142)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHH
Confidence 335779999999999988888865
No 172
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.41 E-value=2.3e+02 Score=24.57 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhh----cC-CCHHhHHHHHHHHHHH
Q 034103 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM----NH-ENTEVTKSALLCIQRL 91 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm----~h-~d~eVr~eAL~avQkl 91 (103)
-+++|.|.+-|. +.++.+.--|+.=|--.|+.+ |..+-.+..-|..+=++. .+ .+..||..+|..|+.|
T Consensus 37 ~eAvralkKRi~-~k~s~vq~lALtlLE~cvkNC--G~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 37 KEAVRALKKRLN-SKNSKVQLLALTLLETCVKNC--GYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 477888888884 556665556666566688888 666665555455444433 45 6888888888877766
No 173
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.11 E-value=1.3e+02 Score=28.94 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=52.9
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhh--ChHH-HHHhhhcCCCHHhHHHHHHHHHHH
Q 034103 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL--KAKE-RVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~l--g~K~-~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
++-.|+.++++..++.+.+=||..+-.|-...| +.+++.+ +.=+ +++.|.+++.+.|+-+|+.|+.-.
T Consensus 432 l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~--~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasv 502 (1075)
T KOG2171|consen 432 LPPALIALLDSTQNVRVQAHAAAALVNFSEECD--KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASV 502 (1075)
T ss_pred ccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 444788888877888999999999999988885 4555543 2223 677788999999999999988654
No 174
>PTZ00475 RESA-like protein; Provisional
Probab=24.85 E-value=2e+02 Score=23.45 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=48.7
Q ss_pred HHHcHHhhh-hCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHH
Q 034103 8 WRDNITNFE-ENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALL 86 (103)
Q Consensus 8 W~ENa~kf~-en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~ 86 (103)
|.+|...+- ++.++++.-++.- ++-|.+.||-.=||.. ..+++.+-|+-...+ -=|-+||.
T Consensus 210 ~~~ni~~l~~~ek~kil~~il~~--------i~~i~l~DIE~Tvk~~--a~~vl~d~~vd~~~~--------~kRa~~l~ 271 (282)
T PTZ00475 210 YYEHILNLLEEEKNEILEEILRN--------ILKIILCDVETTVRRS--AQKVLQNAEGDTNLM--------LKRAKGLQ 271 (282)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH--HHHHhhccCccHHHH--------HHHHHHHH
Confidence 667776664 4444554444433 3678999999999988 778888776544332 23678999
Q ss_pred HHHHHhcch
Q 034103 87 CIQRLFLGA 95 (103)
Q Consensus 87 avQklm~~~ 95 (103)
-+..+|+++
T Consensus 272 ~LG~~~l~~ 280 (282)
T PTZ00475 272 SLGKMILQK 280 (282)
T ss_pred HHHHHHHhh
Confidence 999999875
No 175
>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function.
Probab=24.78 E-value=1.1e+02 Score=25.92 Aligned_cols=54 Identities=11% Similarity=0.303 Sum_probs=41.2
Q ss_pred CcceeehhcchHHHHH----HHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034103 35 DPRALAVACFDLSQFI----QYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ 89 (103)
Q Consensus 35 d~~~laVAc~Dige~v----r~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 89 (103)
++.+..|.+.|=|..+ .++|.+..+++.+++...|-+.+.+ +|+++..+..++.
T Consensus 255 ~~~~~iiingDGa~WIk~~~~~~~~~~~~LD~FHl~k~i~~~~~~-~~~~~~~~~~al~ 312 (470)
T PF06782_consen 255 DKTTKIIINGDGASWIKEGAEFFPKAEYFLDRFHLNKKIKQALSH-DPELKEKIRKALK 312 (470)
T ss_pred ccceEEEEeCCCcHHHHHHHHhhcCceEEecHHHHHHHHHHHhhh-ChHHHHHHHHHHH
Confidence 5555677788855554 4789999999999999999999876 6777776776665
No 176
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=24.41 E-value=1.5e+02 Score=21.33 Aligned_cols=44 Identities=34% Similarity=0.459 Sum_probs=33.0
Q ss_pred CCChHHHHHcHHhh----hhCcHHHHHHHHHHhccCCCcceeehhcchHH
Q 034103 2 HKDPLFWRDNITNF----EENDFQILRVLLTILDTSSDPRALAVACFDLS 47 (103)
Q Consensus 2 H~se~FW~ENa~kf----~en~~~llk~L~~lL~~s~d~~~laVAc~Dig 47 (103)
|.+++=|-|=..++ ++++-+-+..|.+++ |..+.||-.||+|-.
T Consensus 56 ~Hdp~~w~~F~~rY~~EL~~~~~~~l~~L~~~~--~~~~lTLlyaa~d~~ 103 (117)
T COG3189 56 HHDPKKWDEFRERYRAELNAQDAQALEDLLDIA--SHGPLTLLYAAKDEA 103 (117)
T ss_pred cCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHH--cCCCeEEEEeeCchh
Confidence 56677777777776 245555788888887 458899999999963
No 177
>PF09385 HisK_N: Histidine kinase N terminal; InterPro: IPR018984 This domain is found at the N-terminal of sensor histidine kinase proteins. ; PDB: 3PMC_B 3PMD_A.
Probab=24.40 E-value=81 Score=22.98 Aligned_cols=47 Identities=11% Similarity=0.272 Sum_probs=33.9
Q ss_pred hhhhCcHHHHHHHHHHhccCCCcceeehhcch-----------HHHHHHHccchhHHH
Q 034103 14 NFEENDFQILRVLLTILDTSSDPRALAVACFD-----------LSQFIQYHPAGRVIV 60 (103)
Q Consensus 14 kf~en~~~llk~L~~lL~~s~d~~~laVAc~D-----------ige~vr~~P~gr~il 60 (103)
+..+|...+++.+++.+..|.+...+...|.= ||+||=..--||+++
T Consensus 38 ~i~~NG~~~~~lvie~l~~~~~~~~i~~la~KiAkER~~A~iNIgeFVYN~NlGR~~~ 95 (133)
T PF09385_consen 38 EIHQNGEAMFELVIEYLREEISLEEIQQLAYKIAKERAEANINIGEFVYNVNLGRSEL 95 (133)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS-GGGGHHHHHHHHHHHHHHT--THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHhhHhHHHH
Confidence 45678899999999999887766677777764 457776666666554
No 178
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.37 E-value=36 Score=26.44 Aligned_cols=42 Identities=19% Similarity=0.305 Sum_probs=34.0
Q ss_pred ehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCC--CHHhH
Q 034103 40 AVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE--NTEVT 81 (103)
Q Consensus 40 aVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~--d~eVr 81 (103)
+=.||||-.=|--.-+|-.++++=|+.+.-|.|+.++ |..+|
T Consensus 20 sRvCHDiISPvgAInnGLeLLdeg~addDAm~LIrsSArnas~r 63 (214)
T COG5385 20 SRVCHDIISPVGAINNGLELLDEGGADDDAMDLIRSSARNASVR 63 (214)
T ss_pred HHHHhhccCcHHHhhchhhhhccCCccHHHHHHHHHHhhhHHHH
Confidence 3469999888888889999999999999999999654 44444
No 179
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=24.23 E-value=28 Score=28.94 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=25.7
Q ss_pred HHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHH
Q 034103 50 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 50 vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
.|.|--|-+|+.+||++. +.||+ ||+ |+.+|..
T Consensus 321 ~R~y~igaqIL~~Lgv~~--irLlT--np~-K~~~L~~ 353 (367)
T PRK14019 321 YRTYGIGAQILRDLGVGK--MRLLS--SPR-KFPSMSG 353 (367)
T ss_pred cceehHHHHHHHHcCCCe--EEECC--CcH-HHHhhhh
Confidence 466666889999999755 67888 576 9999874
No 180
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=23.45 E-value=1.2e+02 Score=22.17 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=16.6
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 67 ERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
..|+++.-++|+.||.-|+..++.++
T Consensus 11 ~~Il~~~~~~~~~vr~~Al~~l~~il 36 (187)
T PF12830_consen 11 KNILELCLSSDDSVRLAALQVLELIL 36 (187)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 35566666666667766666666554
No 181
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=23.36 E-value=39 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=25.3
Q ss_pred hccCCCcceeehhcchHHHHHHHccchhHHH
Q 034103 30 LDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60 (103)
Q Consensus 30 L~~s~d~~~laVAc~Dige~vr~~P~gr~il 60 (103)
+....||+-.--|..|+..||+.||++.-..
T Consensus 106 ~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 106 FRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred cccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 3445789888899999999999999976543
No 182
>PRK07198 hypothetical protein; Validated
Probab=23.14 E-value=56 Score=28.04 Aligned_cols=35 Identities=14% Similarity=0.227 Sum_probs=28.1
Q ss_pred HHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHH
Q 034103 50 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 50 vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
.|.|--|-+||.+||++ +|.+||+.+.. |+.||..
T Consensus 331 ~RdyGlGAQILrdLGV~-Km~RLLTNnp~--K~~gL~G 365 (418)
T PRK07198 331 MRFQELMPDVLHWLGIR-RIHRLVSMSNM--KYDAITG 365 (418)
T ss_pred ceehhHHHHHHHHhCCC-hhhhhcCCCHH--HHHHHHh
Confidence 58888899999999987 55588987643 8888865
No 183
>cd08784 Death_DRs Death Domain of Death Receptors. Death domain (DD) found in death receptor proteins. Death receptors are members of the tumor necrosis factor (TNF) receptor superfamily, characterized by having a cytoplasmic DD. Known members of the family are Fas (CD95/APO-1), TNF-receptor 1 (TNFR1/TNFRSF1A/p55/CD120a), TNF-related apoptosis-inducing ligand receptor 1 (TRAIL-R1 /DR4), and receptor 2 (TRAIL-R2/DR5/APO-2/KILLER), as well as Death Receptor 3 (DR3/APO-3/TRAMP/WSL-1/LARD). They are involved in apoptosis signaling pathways. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=23.08 E-value=1.7e+02 Score=18.58 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=29.1
Q ss_pred HHHHccc--hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 49 FIQYHPA--GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 49 ~vr~~P~--gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
++...|. =+.+...||.++--..-+.+.+|+.+.++...+.+|.-
T Consensus 5 v~~~v~~~~Wk~laR~LGls~~~I~~ie~~~~~~~eq~~~mL~~W~~ 51 (79)
T cd08784 5 VFEEVPFDQHKRFFRKLGLSDNEIKVAELDNPQHRDRVYELLRIWRN 51 (79)
T ss_pred HHHHCCHHHHHHHHHHcCCCHHHHHHHHHcCCchHHHHHHHHHHHHh
Confidence 4445553 36777788877777777776666666666666666653
No 184
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=23.02 E-value=95 Score=23.91 Aligned_cols=65 Identities=25% Similarity=0.350 Sum_probs=39.8
Q ss_pred CcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 18 n~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
.+-+.+..|+..|. +.+..+-.-|...||+...+. ..+-..+...+++++..||+.|+.++..+=
T Consensus 177 ~~~~~~~~l~~~l~-~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~ 241 (335)
T COG1413 177 GDPEAIPLLIELLE-DEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLEVRKAALLALGEIG 241 (335)
T ss_pred CChhhhHHHHHHHh-CchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccC
Confidence 34445555556653 233344444555555443332 235577888899999999999998876653
No 185
>PF09093 Lyase_catalyt: Lyase, catalytic; InterPro: IPR015177 This domain is predominantly found in chondroitin ABC lyase I, adopting a helical structure, with fifteen alpha-helices which are at least two turns long and several short helical turns. The bulk of the domain is formed by ten alpha-helices forming five hairpin-like pairs and arranged into an incomplete toroid, the (alpha/alpha)5 fold. Additionally, two long and two short alpha-helices at the N terminus of the domain wrap around the toroid. At the C-terminal end of the toroid there is one additional short alpha-helix. This domain is required for degradation of polysaccharides containing 1,4-beta-D-hexosaminyl and 1,3-beta-D-glucoronosyl or 1,3-alpha-L-iduronosyl linkages to disaccharides containing 4-deoxy-beta-D-gluc-4-enuronosyl groups []. ; PDB: 2Q1F_A 1HN0_A.
Probab=22.99 E-value=1.4e+02 Score=25.18 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=38.3
Q ss_pred chHHHHHHHccchhHH-HHhh--ChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 44 FDLSQFIQYHPAGRVI-VTDL--KAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 44 ~Dige~vr~~P~gr~i-l~~l--g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+++|+...-.|.++.. ++.+ ..-.++..+|--+|+.-|.++|+..+.+|.+.
T Consensus 190 s~~~~~~~~~~~~~~~~~D~~nT~l~~~l~siLl~~d~~ekvr~Lk~fs~wl~~~ 244 (373)
T PF09093_consen 190 SAFGEIYQPSPEIRGENLDYFNTLLQGRLASILLMPDDPEKVRYLKSFSRWLDYS 244 (373)
T ss_dssp GCCHHHHTS--STTTT-HHHHHHTHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCeeecCCCCCCcchHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhCc
Confidence 3888888888877766 4444 34566777788889999999999999999543
No 186
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=22.76 E-value=2.3e+02 Score=25.06 Aligned_cols=78 Identities=13% Similarity=0.141 Sum_probs=51.3
Q ss_pred hhCcHHHHHHHHHHhccCC---CcceeehhcchHHHHHHHccchhHHHHhhChH--HHHHhhhcC-CCHHhHHHHHHHHH
Q 034103 16 EENDFQILRVLLTILDTSS---DPRALAVACFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNH-ENTEVTKSALLCIQ 89 (103)
Q Consensus 16 ~en~~~llk~L~~lL~~s~---d~~~laVAc~Dige~vr~~P~gr~il~~lg~K--~~vM~Lm~h-~d~eVr~eAL~avQ 89 (103)
++++.+-.....++|...+ ...-.-.|..-|-.....- +=.++++.-++ ..+.+-+.. +|+.+|..||.-++
T Consensus 278 ~p~~~~~~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~--sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~ 355 (516)
T KOG2956|consen 278 TPNSVDQSALVADLLKEISGSERASERKEALSELPKMLCEG--SFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLR 355 (516)
T ss_pred CCCCcchhHHHHHHHHhccCccchhHHHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 3555554455555553322 2223344555555554443 56678877666 788888887 89999999999999
Q ss_pred HHhcch
Q 034103 90 RLFLGA 95 (103)
Q Consensus 90 klm~~~ 95 (103)
+++-++
T Consensus 356 ~ml~~Q 361 (516)
T KOG2956|consen 356 EMLTNQ 361 (516)
T ss_pred HHHHhc
Confidence 999877
No 187
>PRK13276 cell wall biosynthesis protein ScdA; Provisional
Probab=22.12 E-value=74 Score=24.82 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=17.6
Q ss_pred HHHHHHHccchhHHHHhhC
Q 034103 46 LSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 46 ige~vr~~P~gr~il~~lg 64 (103)
||+.|+.+|....|..++|
T Consensus 8 igeIv~~~P~aa~VF~~~g 26 (224)
T PRK13276 8 VADVVTDYPKAADIFRSVG 26 (224)
T ss_pred HHHHHHhCccHHHHHHHcC
Confidence 7999999999999999975
No 188
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein. This small clade of proteins are found adjacent to other genes implicated in the catabolism of phosphonates. They are members of the TIGR00277 domain family and contain a series of five invariant histidines (the domain in general has only four).
Probab=22.05 E-value=27 Score=26.40 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=26.0
Q ss_pred CCcceeehhcchHHHHHHHcc--------------chhHHHHhhChHHHHHhhhc
Q 034103 34 SDPRALAVACFDLSQFIQYHP--------------AGRVIVTDLKAKERVMKLMN 74 (103)
Q Consensus 34 ~d~~~laVAc~Dige~vr~~P--------------~gr~il~~lg~K~~vM~Lm~ 74 (103)
++..++|-.+||||+++.-.+ -|..+++.+ --++|-++..
T Consensus 43 d~elvvAALLHDIGhll~~~~~~~~~~g~~~~He~iga~~Lr~~-F~~~V~~lV~ 96 (179)
T TIGR03276 43 DDELIVAAFLHDIGHLLADEGATPMGRGGDDHHEELAADYLREL-FSPSVTEPIR 96 (179)
T ss_pred CHHHHHHHHHHhcchhhhcccccccccCCCccHHHHHHHHHHHH-cCHHHHHHHH
Confidence 566788889999999876322 245666654 3355555553
No 189
>PF08759 DUF1792: Domain of unknown function (DUF1792); InterPro: IPR014869 This domain is found at the C terminus of proteins such as Q97P75 from SWISSPROT that also contain the glycosyl transferase domain at the N terminus. Sometimes it is found independently.
Probab=22.04 E-value=89 Score=24.63 Aligned_cols=31 Identities=35% Similarity=0.418 Sum_probs=21.5
Q ss_pred hhhhCcHHHHHHHHHHhccCCCcceeehhcchH
Q 034103 14 NFEENDFQILRVLLTILDTSSDPRALAVACFDL 46 (103)
Q Consensus 14 kf~en~~~llk~L~~lL~~s~d~~~laVAc~Di 46 (103)
-|.+.+-+|-++|.++| .|+++. +-|+.-|+
T Consensus 18 ~fQ~~~~~La~rLkeil-~~~~~~-~lVclpd~ 48 (225)
T PF08759_consen 18 PFQEYDPELAKRLKEIL-RSSNEN-LLVCLPDV 48 (225)
T ss_pred CCCCCCHHHHHHHHHHH-hCCCCC-EEEECCcc
Confidence 36788999999999999 454443 33444443
No 190
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=21.98 E-value=97 Score=22.33 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=17.5
Q ss_pred HHHhhhcCC-CHHhHHHHHHHHHHH
Q 034103 68 RVMKLMNHE-NTEVTKSALLCIQRL 91 (103)
Q Consensus 68 ~vM~Lm~h~-d~eVr~eAL~avQkl 91 (103)
.+++++..+ ++++|.||++++.-+
T Consensus 14 ~L~~iLk~e~s~~iR~E~lr~lGil 38 (160)
T PF11865_consen 14 ILLNILKTEQSQSIRREALRVLGIL 38 (160)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 455666544 699999999998644
No 191
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=21.98 E-value=81 Score=21.11 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.5
Q ss_pred hhhcCCCHHhHHHHHHHHHHHhcch
Q 034103 71 KLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 71 ~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.=|+|=+++||.-|+.-+.-++-+.
T Consensus 18 sAMTHi~~~Ir~dsl~~L~~lL~~~ 42 (102)
T PF12333_consen 18 SAMTHISPDIREDSLKFLDLLLEHA 42 (102)
T ss_pred HHHHhCCHHHHHhHHHHHHHHHHHC
Confidence 4489999999999999999888654
No 192
>PLN00416 carbonate dehydratase
Probab=21.98 E-value=74 Score=25.19 Aligned_cols=37 Identities=24% Similarity=0.433 Sum_probs=23.4
Q ss_pred HcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchH
Q 034103 10 DNITNFEENDFQILRVLLTILDTSSDPRALAVACFDL 46 (103)
Q Consensus 10 ENa~kf~en~~~llk~L~~lL~~s~d~~~laVAc~Di 46 (103)
+-..+|....+.--..+.+-|.....|.++-|+|.|=
T Consensus 54 ~Gn~rF~~~~~~~~~~~~~~la~gQ~P~alvI~CsDS 90 (258)
T PLN00416 54 TGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSDS 90 (258)
T ss_pred HHHHHHHhcccccCHHHHHhhccCCCCCEEEEEecCC
Confidence 4455665443333334444455678999999999983
No 193
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=21.87 E-value=31 Score=25.62 Aligned_cols=34 Identities=21% Similarity=0.162 Sum_probs=27.4
Q ss_pred HHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHH
Q 034103 50 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 50 vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
.|.|.-|-+|+.+||++ =|.||+++ .-||.||.-
T Consensus 126 ~R~yGiGAQIL~dLGv~--~mrLLs~~--~~k~~~L~g 159 (193)
T cd00641 126 ARDYGLAAQILRDLGIK--SVRLLTNN--PDKIDALEG 159 (193)
T ss_pred ccchHHHHHHHHHcCCC--eEEECCCC--HHHHHHHHh
Confidence 68888899999999965 68999884 348888864
No 194
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=21.80 E-value=1.3e+02 Score=26.01 Aligned_cols=74 Identities=14% Similarity=0.162 Sum_probs=53.1
Q ss_pred cHHHHH-HHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhh-hcCCCHHhHHHHHHHHHHHh
Q 034103 19 DFQILR-VLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKL-MNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 19 ~~~llk-~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~L-m~h~d~eVr~eAL~avQklm 92 (103)
++.+.+ .|..++..|.++.+.-+|.-=|..++|.-+---..+..-|++..+-.| -++-+-.+.|+.+.|+=.|=
T Consensus 153 e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLt 228 (442)
T KOG2759|consen 153 ELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLT 228 (442)
T ss_pred HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhh
Confidence 344444 344555555666666555555888888776666677777999998888 56789999999999986664
No 195
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=21.52 E-value=51 Score=20.79 Aligned_cols=17 Identities=12% Similarity=0.307 Sum_probs=14.6
Q ss_pred HHHccchhHHHHhhChH
Q 034103 50 IQYHPAGRVIVTDLKAK 66 (103)
Q Consensus 50 vr~~P~gr~il~~lg~K 66 (103)
.+|.|++|..+++-|+.
T Consensus 11 MK~lPEak~~L~k~GIe 27 (56)
T PF10815_consen 11 MKYLPEAKEELDKKGIE 27 (56)
T ss_pred HHHhHHHHHHHHHcCcc
Confidence 48999999999998754
No 196
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=21.51 E-value=1.9e+02 Score=18.42 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=27.7
Q ss_pred HHHHHHHHhccCCCcce--eehhcchHHHHHHHccchhHHHHhhChHHH
Q 034103 22 ILRVLLTILDTSSDPRA--LAVACFDLSQFIQYHPAGRVIVTDLKAKER 68 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~--laVAc~Dige~vr~~P~gr~il~~lg~K~~ 68 (103)
|.+.|..|+..++|+.. +-..---+.+-|-.+|.|+.++..+|-+..
T Consensus 13 L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g~~~~L~~~GF~~~ 61 (87)
T PF09409_consen 13 LEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPGARELLEALGFREV 61 (87)
T ss_dssp HHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTTHHHHHHHHT-EE-
T ss_pred HHHHHHHHccCCCcccceEeecCcchHHHHhcCChhHHHHHHHCCCEEe
Confidence 45566666766677653 333333334445567899999999986655
No 197
>KOG4083 consensus Head-elevated expression protein [Transcription]
Probab=21.49 E-value=88 Score=24.20 Aligned_cols=28 Identities=21% Similarity=0.453 Sum_probs=22.3
Q ss_pred CChHHHHHcHHhhhhCcHHHHHHHHHHh
Q 034103 3 KDPLFWRDNITNFEENDFQILRVLLTIL 30 (103)
Q Consensus 3 ~se~FW~ENa~kf~en~~~llk~L~~lL 30 (103)
+.+.||+|-..++++|+-+.-|.+.+.-
T Consensus 101 k~daf~Ke~larlEen~~e~ykv~~eqy 128 (192)
T KOG4083|consen 101 KQDAFYKEQLARLEENSSEFYKVTTEQY 128 (192)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3568999999999999977776665554
No 198
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=21.48 E-value=76 Score=16.07 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHHH
Q 034103 79 EVTKSALLCIQRL 91 (103)
Q Consensus 79 eVr~eAL~avQkl 91 (103)
.||++|..++..+
T Consensus 2 ~vR~~aa~aLg~~ 14 (30)
T smart00567 2 LVRHEAAFALGQL 14 (30)
T ss_pred HHHHHHHHHHHHc
Confidence 5899999999876
No 199
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=21.39 E-value=1.4e+02 Score=27.49 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=36.5
Q ss_pred HHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034103 49 FIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 49 ~vr~~P~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+.+.|..+++.+.+.|.-...-.|+..+||.|...||.++-.+-
T Consensus 151 v~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~ 194 (757)
T COG5096 151 VAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEID 194 (757)
T ss_pred HHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence 34556668888888898888889999999999999999986653
No 200
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=21.20 E-value=90 Score=17.76 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=17.2
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHH
Q 034103 65 AKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
....|-.-|..+.+.||.-|+..
T Consensus 19 v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 19 VQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHhcCCChHHHHHHHHH
Confidence 44455556788999999998865
No 201
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=20.88 E-value=1.5e+02 Score=21.72 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=22.4
Q ss_pred HHHHHhhhcC--CCHHhHHHHHHHHHHHhcch
Q 034103 66 KERVMKLMNH--ENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 66 K~~vM~Lm~h--~d~eVr~eAL~avQklm~~~ 95 (103)
-...++|++. +|+.||..|..++.. +...
T Consensus 78 ~~~aLeLL~~~f~~~~VR~yAV~~L~~-~sd~ 108 (166)
T cd00870 78 IEDALELLSPYFTNPVVRKYAVSRLKL-ASDE 108 (166)
T ss_pred HHHHHHHcCccCCCHHHHHHHHHHHHh-CCHH
Confidence 4566888875 599999999999987 4444
No 202
>PF13879 KIAA1430: KIAA1430 homologue
Probab=20.86 E-value=1e+02 Score=19.66 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=25.0
Q ss_pred ChHHHHHcHHhhhhCcHHHHHHHHHHhcc
Q 034103 4 DPLFWRDNITNFEENDFQILRVLLTILDT 32 (103)
Q Consensus 4 se~FW~ENa~kf~en~~~llk~L~~lL~~ 32 (103)
+..|+.|-...++.+|..||.+|..|-.+
T Consensus 30 k~~~~~er~~~I~reN~~LL~ki~~I~~~ 58 (98)
T PF13879_consen 30 KLQFEEERQREIERENQILLRKIMEIMRK 58 (98)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45678888899999999999999999854
No 203
>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T.
Probab=20.79 E-value=28 Score=29.14 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=15.4
Q ss_pred ehhcchHHHHHHHccchhHHHH
Q 034103 40 AVACFDLSQFIQYHPAGRVIVT 61 (103)
Q Consensus 40 aVAc~Dige~vr~~P~gr~il~ 61 (103)
-=+|.||+-|.+|- ||+.|+
T Consensus 392 eQl~dDL~aYA~HA--gRKTId 411 (414)
T PF15511_consen 392 EQLGDDLEAYAKHA--GRKTID 411 (414)
T ss_dssp HHHHHHHHHHHHHT--T-SEE-
T ss_pred HHHHHHHHHHHHHc--CCCcCC
Confidence 34799999999999 888765
No 204
>PLN02252 nitrate reductase [NADPH]
Probab=20.68 E-value=48 Score=30.58 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCcceeeh--hcchHHHHHHHccchhHHHHhhChHH
Q 034103 34 SDPRALAV--ACFDLSQFIQYHPAGRVIVTDLKAKE 67 (103)
Q Consensus 34 ~d~~~laV--Ac~Dige~vr~~P~gr~il~~lg~K~ 67 (103)
.+..++.| -.+|+..|++.||.|..+|....|++
T Consensus 531 ~~~~Wivi~g~VYDvT~fl~~HPGG~~~I~~~aG~D 566 (888)
T PLN02252 531 EDSCWIVVHGHVYDCTRFLKDHPGGADSILINAGTD 566 (888)
T ss_pred CCCeEEEECCEEEeCHHHHHHCCChHHHHHhhcCCC
Confidence 33444443 36999999999999998887776663
No 205
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=20.63 E-value=3.8e+02 Score=20.55 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=18.4
Q ss_pred HHHhhChHHHHHhh---hc-CCCHHhHHHHHHHHHHH
Q 034103 59 IVTDLKAKERVMKL---MN-HENTEVTKSALLCIQRL 91 (103)
Q Consensus 59 il~~lg~K~~vM~L---m~-h~d~eVr~eAL~avQkl 91 (103)
.+.++|-...+..| +. ++|..||..|..++-++
T Consensus 97 aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~ 133 (335)
T COG1413 97 ALGELGDPEAVPPLVELLENDENEGVRAAAARALGKL 133 (335)
T ss_pred HHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhc
Confidence 44445534333333 33 57777777777776654
No 206
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.57 E-value=2.5e+02 Score=26.70 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=50.8
Q ss_pred CChHHHH--HcHHhhh---hCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCC
Q 034103 3 KDPLFWR--DNITNFE---ENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHEN 77 (103)
Q Consensus 3 ~se~FW~--ENa~kf~---en~~~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P~gr~il~~lg~K~~vM~Lm~h~d 77 (103)
+|+.||. .+...+. .+..+-+|.|.+=|..= | +..|=+--...+.. .-|.-++++-.|.+.|...
T Consensus 266 ~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~v-d----~~~~~~s~~Ile~~-~~r~n~~kL~~kL~~i~~V---- 335 (951)
T KOG2115|consen 266 RSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEV-D----AENVRKSIKILELA-LTRKNVEKLLQKLRLIATV---- 335 (951)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHH----
Confidence 6899997 4555553 45666667666655310 1 11121111112211 2445566777788888776
Q ss_pred HHhHHHHHHHHHHHhcchhhhhhh
Q 034103 78 TEVTKSALLCIQRLFLGAKYASFL 101 (103)
Q Consensus 78 ~eVr~eAL~avQklm~~~~~~~~~ 101 (103)
++|..++|.++..++|+.++
T Consensus 336 ----~~~q~~vq~ll~~~d~~~AL 355 (951)
T KOG2115|consen 336 ----HQAQSTVQLLLSTQDFVGAL 355 (951)
T ss_pred ----HhhhHHHHHHHhcccHHHHH
Confidence 57888889999888888665
No 207
>COG4818 Predicted membrane protein [Function unknown]
Probab=20.20 E-value=64 Score=22.68 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=22.7
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034103 67 ERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
-.++=||+.+|+=||++|++.+=..++-
T Consensus 18 GllFlllEre~~FVrFHAmQS~ltF~~l 45 (105)
T COG4818 18 GLLFLLLERESKFVRFHAMQSFLTFLGL 45 (105)
T ss_pred HHHHHHhhccCcceeehhHHHHHHHHHH
Confidence 3567788999999999999988766643
No 208
>PF01875 Memo: Memo-like protein; InterPro: IPR002737 This entry contains proteins from all branches of life. The molecular function of these proteins are unknown, but Memo (mediator of ErbB2-driven cell motility) a human protein is included in this family []. It has been suggested that Memo controls cell migration by relaying extracellular chemotactic signals to the microtubule cytoskeleton [].; PDB: 3BD0_C 3BCZ_C.
Probab=20.19 E-value=1e+02 Score=24.02 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHcc---chhHHHHhh-ChHHHHHhhhcCCCHHhHHHHHH
Q 034103 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHP---AGRVIVTDL-KAKERVMKLMNHENTEVTKSALL 86 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Dige~vr~~P---~gr~il~~l-g~K~~vM~Lm~h~d~eVr~eAL~ 86 (103)
++-+.|..+++ |+.++-|+..|+.+|-+.|. ....+.++. ..-...|+.+..-|++-=++.+.
T Consensus 158 ~~a~~L~~~~~---~~~~liV~SsD~sHyg~rfg~~~~~~~~~~~~~~~D~~~i~~i~~~d~~~~~~~~~ 224 (276)
T PF01875_consen 158 ELAEALAEYLK---DEGTLIVASSDFSHYGPRFGDAPKPEEIAEKIEALDREAIEAIEALDPEGFYEYLK 224 (276)
T ss_dssp HHHHHHHHHHT---STTEEEEEE----EEBGGGT--GGGSSHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHc---CCCEEEEEeCccccccccccCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 45555556663 44599999999998875543 122333332 12356677777777776555543
No 209
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=20.11 E-value=2e+02 Score=18.84 Aligned_cols=46 Identities=7% Similarity=0.075 Sum_probs=31.9
Q ss_pred HHHHHcc--chhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034103 48 QFIQYHP--AGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 48 e~vr~~P--~gr~il~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
.++...| .=|.++.+||..+--++-..+.+++.+-+.-..+++|.-
T Consensus 4 ~v~d~v~~~~wk~~~R~LGlse~~Id~ie~~~~~~~Eq~yqmL~~W~~ 51 (80)
T cd08313 4 TVLDEVPPRRWKEFVRRLGLSDNEIERVELDHRRCRDAQYQMLKVWKE 51 (80)
T ss_pred HHHHhCCHHHHHHHHHHcCCCHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 3444555 467788889988888888887777666655555666654
Done!