RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 034105
(103 letters)
>gnl|CDD|181574 PRK08881, rpsN, 30S ribosomal protein S14; Reviewed.
Length = 101
Score = 100 bits (252), Expect = 2e-29
Identities = 47/92 (51%), Positives = 58/92 (63%)
Query: 12 DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 71
+ KR+ L K+ KR K++ D NL E R + KL +LPRNSS TRLRNRC TGR
Sbjct: 10 EKKRKKLVAKYAAKRAELKAIISDPNLSDEERYEARLKLQKLPRNSSPTRLRNRCELTGR 69
Query: 72 SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
R Y KF +SRI R LA++G + GV KASW
Sbjct: 70 PRGYYRKFGLSRIKLRELAHRGEIPGVVKASW 101
>gnl|CDD|214354 CHL00074, rps14, ribosomal protein S14.
Length = 100
Score = 83.7 bits (208), Expect = 1e-22
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 14 KRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 73
KR+ L K+ LKR+ K + V+ +E E + KL LPRNS+ TRL NRC TGR R
Sbjct: 12 KRQKLVQKYHLKRRSLKKEIKKVSSLSEKWEIH-GKLQSLPRNSAPTRLHNRCFLTGRPR 70
Query: 74 AVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
Y F +SR V R +A+ +L GV K+SW
Sbjct: 71 GNYRDFGLSRHVLREMAHACLLPGVTKSSW 100
>gnl|CDD|201115 pfam00253, Ribosomal_S14, Ribosomal protein S14p/S29e. This family
includes both ribosomal S14 from prokaryotes and S29
from eukaryotes.
Length = 53
Score = 73.3 bits (181), Expect = 5e-19
Identities = 33/52 (63%), Positives = 42/52 (80%)
Query: 49 KLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKK 100
KL++LPRNSS TR+RNRC+ TGR R V KF +SRI FR LA++G++ GVKK
Sbjct: 2 KLSKLPRNSSPTRIRNRCVLTGRPRGVIRKFGLSRICFRELAHKGLIPGVKK 53
>gnl|CDD|223277 COG0199, RpsN, Ribosomal protein S14 [Translation, ribosomal
structure and biogenesis].
Length = 61
Score = 73.0 bits (180), Expect = 6e-19
Identities = 32/61 (52%), Positives = 36/61 (59%)
Query: 43 REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 102
R KL LPR S R RNRC GR R V KF + RI FR LA++G + GVKKAS
Sbjct: 1 RAMAKLKLKALPRPKSPGRGRNRCRRCGRPRGVIRKFGLCRICFRELAHKGEIPGVKKAS 60
Query: 103 W 103
W
Sbjct: 61 W 61
>gnl|CDD|181216 PRK08061, rpsN, 30S ribosomal protein S14; Reviewed.
Length = 61
Score = 56.8 bits (138), Expect = 2e-12
Identities = 23/44 (52%), Positives = 27/44 (61%)
Query: 60 TRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
R RC GR +VY KF + RI FR LA +G + GVKKASW
Sbjct: 18 VRAYTRCERCGRPHSVYRKFGLCRICFRELAYKGQIPGVKKASW 61
>gnl|CDD|180742 PRK06911, rpsN, 30S ribosomal protein S14; Reviewed.
Length = 100
Score = 43.5 bits (102), Expect = 7e-07
Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 10 IEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFT 69
+ + KR L K+ +R K L + + +V + KLA+LP NS+ R RC
Sbjct: 8 MRESKRAKLVEKYRQRRNELKQLIKSSD-DFQVIMESQAKLAKLPVNSNPVRYVTRCKQC 66
Query: 70 GRSRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
GR AVY KF + RI R G + G +K+SW
Sbjct: 67 GRPHAVYRKFNLCRICLRQQLMVGNIPGGRKSSW 100
>gnl|CDD|191499 pfam06340, TcpF, Vibrio cholerae toxin co-regulated pilus
biosynthesis protein F. This family consists of several
Vibrio cholerae toxin co-regulated pilus biosynthesis
protein F (TcpF) sequences. TcpF is known to be a
secreted virulence protein but its exact function is
unknown.
Length = 310
Score = 27.9 bits (62), Expect = 0.82
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 7 KRNIEDHKRRLLATKFELKRKLYKSLY-----RDVNLPTEVREKYLCKLARLPRNSSFTR 61
R ED ++RL + + KLY Y D ++PT R++ L L L ++ +
Sbjct: 71 TRTKEDFQKRLNSGDYGGLEKLYIDYYLAQTTYDWHIPT--RDQ-LQTLVNLAKDGKLSS 127
Query: 62 LRNRCIFTGR 71
GR
Sbjct: 128 TLKSEYLKGR 137
>gnl|CDD|239388 cd03114, ArgK-like, The function of this protein family is unkown.
The protein sequences are similar to the ArgK protein in
E. coli. ArgK protein is a membrane ATPase which is
required for transporting arginine, ornithine and lysine
into the cells by the arginine and ornithine (AO system)
and lysine, arginine and ornithine (LAO) transport
systems.
Length = 148
Score = 26.9 bits (60), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 77 EKFRMSRI-----VF-RSLANQGMLMGVKKASW 103
++ RM R VF RSLA +G L G+ +A+
Sbjct: 49 DRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81
>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related
GTPases of G3E family [Amino acid transport and
metabolism].
Length = 323
Score = 26.9 bits (60), Expect = 1.9
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 6/32 (18%)
Query: 78 KFRMSRI-----VF-RSLANQGMLMGVKKASW 103
+ RM R+ VF RS ++G L G+ +A+
Sbjct: 102 RIRMQRLAVDPGVFIRSSPSRGTLGGLSRATR 133
>gnl|CDD|148787 pfam07373, CAMP_factor, CAMP factor (Cfa). This family consists of
several bacterial CAMP factor (Cfa) proteins which seem
to be specific to Streptococcus species. The CAMP
reaction is a synergistic lysis of erythrocytes by the
interaction of an extracellular protein (CAMP factor)
produced by some streptococcal species with the
Staphylococcus aureus sphingomyelinase C (beta-toxin).
Length = 228
Score = 27.0 bits (60), Expect = 1.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 23 ELKRKLYKSL-YRDVNLPTEVREKYL-CKLARLPRNSSFTRLRNRCIFTGRSRAVY 76
+K K Y D+ PT+V Y+ KL + + F R ++ + +S VY
Sbjct: 136 AVKALEAKVQAYPDLK-PTDVATIYVKSKLDKTIWQTRFDR--DKKVLGKKSFDVY 188
>gnl|CDD|185087 PRK15133, PRK15133, microcin C ABC transporter permease YejB;
Provisional.
Length = 364
Score = 26.2 bits (58), Expect = 3.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 50 LARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRS 88
L L +NS +R + + T R++ V EK + + VFR+
Sbjct: 243 LTMLTKNSFLDEIRKQYVVTARAKGVSEKNILWKHVFRN 281
>gnl|CDD|147328 pfam05095, DUF687, Protein of unknown function (DUF687). This
family contains several uncharacterized Chlamydia
proteins.
Length = 542
Score = 26.2 bits (58), Expect = 3.1
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 68 FTGRSRAVYEKFRMSRIVFRSLANQGMLMGV 98
T R R+ E++R+ R++ L + +L+ +
Sbjct: 333 LTNR-RSRRERYRVIRLLALGLRSLALLVTL 362
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 26.2 bits (57), Expect = 4.1
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 9 NIEDHKRRLLATKFELKRKLYKSLYRDVN 37
NIE+ K LL E+K+ ++ + +D+N
Sbjct: 726 NIENKKNELLDIIVEIKKHIHGEINKDLN 754
>gnl|CDD|148484 pfam06887, DUF1265, Protein of unknown function (DUF1265). This
family represents a conserved region approximately 50
residues long within a number of proteins of unknown
function that seem to be restricted to C. elegans. The
GO annotation for this protein indicate that its a
protein involved in nematode larval development and has
a positive regulation on growth rate.
Length = 48
Score = 24.3 bits (53), Expect = 4.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 46 YLCKLARLPRNSSFTRLRNRCIFT 69
Y+C L + ++ FT ++ CI T
Sbjct: 12 YVCNLLIVAEDAKFTNVQECCIAT 35
>gnl|CDD|234972 PRK01688, PRK01688, histidinol-phosphate aminotransferase;
Provisional.
Length = 351
Score = 25.7 bits (57), Expect = 4.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 67 IFTGRSRAVYEKFRMSRIVFRSLANQGMLM 96
+F + + +F S VF+SL +QG+++
Sbjct: 291 VFDSETNYILARFTASSAVFKSLWDQGIIL 320
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 25.8 bits (57), Expect = 5.6
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 8 RNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLP 54
+ED +R L + + K +L+ L R NL E + L +LP
Sbjct: 109 ALLEDLDKRALLKELKSKSRLFTPLARKTNLTPEQAARIAELLLKLP 155
>gnl|CDD|218114 pfam04501, Baculo_VP39, Baculovirus major capsid protein VP39.
This family constitutes the 39 kDa major capsid protein
of the Baculoviridae.
Length = 300
Score = 25.4 bits (56), Expect = 6.7
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 50 LARLPRNSSFTRLRNRCIFTG 70
+A +P S+ +R++N CIF
Sbjct: 1 MALVPAGSASSRMKNYCIFGA 21
>gnl|CDD|131836 TIGR02789, nickel_nikB, nickel ABC transporter, permease subunit
NikB. This family consists of the NikB family of nickel
ABC transporter permeases. Operons that contain this
protein also contain a homologous permease subunit NikC.
Nickel is used in cells as part of urease or certain
hydrogenases or superoxide dismutases [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 314
Score = 25.1 bits (55), Expect = 8.2
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 46 YLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGV 98
+ ARL R S ++ R + R R + E++ + R + R+ A M+ +
Sbjct: 187 SVSIYARLLRASMLDNMQERYVTYARVRGIKERWVIRRHILRN-AILPMITAL 238
>gnl|CDD|117702 pfam09147, DUF1933, Domain of unknown function (DUF1933).
Members of this family are predominantly found in
carbapenam synthetase, and are composed of two
antiparallel six-stranded beta-sheets that form a
sandwich, flanked on each side by two alpha-helices.
Their exact function has not, as yet, been determined.
Length = 201
Score = 24.8 bits (54), Expect = 8.6
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 59 FTRLRNRCIFTGRSRAVYEKFRMSR---IVFRSLANQGMLMGV 98
L N C+FTGR +K+R R + SL N+ +L +
Sbjct: 25 IEMLSNGCLFTGRKTP-VQKYRFERGTAYLIGSLYNKRLLRHL 66
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.135 0.388
Gapped
Lambda K H
0.267 0.0610 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,121,739
Number of extensions: 429374
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 513
Number of HSP's successfully gapped: 26
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.5 bits)