RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 034105
         (103 letters)



>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli
           [TaxId: 562]}
          Length = 100

 Score = 91.8 bits (228), Expect = 2e-26
 Identities = 42/92 (45%), Positives = 53/92 (57%)

Query: 12  DHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGR 71
           + KR  LA K+  KR   K++  DVN   E R   + KL  LPR+SS +R RNRC  TGR
Sbjct: 9   EVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGR 68

Query: 72  SRAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
                 KF +SRI  R  A +G + G+KKASW
Sbjct: 69  PHGFLRKFGLSRIKVREAAMRGEIPGLKKASW 100


>d2uubn1 g.39.1.7 (N:2-61) Ribosomal protein S14 {Thermus
           thermophilus [TaxId: 274]}
          Length = 60

 Score = 72.4 bits (178), Expect = 3e-19
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)

Query: 43  REKYLCKLARLPRNSSFTRLRNRCIFTGRSRAVYEKFRMSRIVFRSLANQGMLMGVKKAS 102
           R+  + K  R P+     R   RC+  GR+R+VY  F + RI  R LA++G L GV+KAS
Sbjct: 2   RKALIEKAKRTPKFK--VRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKAS 59

Query: 103 W 103
           W
Sbjct: 60  W 60


>d1x38a1 c.1.8.7 (A:1-388) Beta-D-glucan exohydrolase, N-terminal
           domain {Barley (Hordeum vulgare) [TaxId: 4513]}
          Length = 388

 Score = 28.5 bits (62), Expect = 0.15
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 3   TVSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLAR 52
            +   R I+D   R+L  KF +   L+++ Y D  +  ++ ++    LAR
Sbjct: 336 VIPMSR-IDDAVTRILRVKFTM--GLFENPYADPAMAEQLGKQEHRDLAR 382


>d2etva1 c.92.2.4 (A:25-358) Putative iron(III) transporter TM0189
           {Thermotoga maritima [TaxId: 2336]}
          Length = 334

 Score = 25.6 bits (55), Expect = 1.2
 Identities = 7/31 (22%), Positives = 14/31 (45%)

Query: 16  RLLATKFELKRKLYKSLYRDVNLPTEVREKY 46
             LA  + + + LY   + D++   +  E Y
Sbjct: 270 TALADAYFIGKVLYPERFTDIDPEEKADEIY 300


>d1kxla_ b.40.4.3 (A:) CDC13 ssDNA-binding domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 187

 Score = 25.2 bits (55), Expect = 1.6
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 9/57 (15%)

Query: 21  KFELKRKLYKS----LYRDVNL-----PTEVREKYLCKLARLPRNSSFTRLRNRCIF 68
           K  +K K+Y      + R+         + +     C+  RL    +F R+    I 
Sbjct: 119 KMNIKVKMYNGKLNAIVRECEPVPHSQISSIASPSQCEHLRLFYQRAFKRIGESAIS 175


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 24.4 bits (52), Expect = 3.7
 Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 4  VSEKRNIEDHKRRLLATKFELKRKLYKSLYRDVNLPTEVREKYLCKLA 51
          +   ++ E   +R+      ++ K       D  L    ++KY+CKL 
Sbjct: 12 IRNCKSKEAEIKRINKELANIRSKFKG----DKALDGYSKKKYVCKLL 55


>d1l2la_ c.72.1.3 (A:) ADP-dependent glucokinase {Archaeon
           Thermococcus litoralis [TaxId: 2265]}
          Length = 451

 Score = 24.0 bits (52), Expect = 4.8
 Identities = 4/31 (12%), Positives = 12/31 (38%), Gaps = 1/31 (3%)

Query: 73  RAVYEKFRMSRIVFRSLANQGMLMGVKKASW 103
             + ++  + RI F +     + +  +K   
Sbjct: 325 LKLIKETGVKRIHFHTYGYY-LALTREKGEH 354


>d1ciya2 b.77.2.1 (A:256-461) delta-Endotoxin (insectocide),
          middle domain {Bacillus thuringiensis, CRYIA (A)
          [TaxId: 1428]}
          Length = 206

 Score = 23.8 bits (51), Expect = 5.0
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 18 LATKFELKRKLYKS-LYRDVNLPTEVREKYLCKLARLPRNSSFTRLRNRCIFTGRSR 73
          + T  +L R++Y + +  + +       + + +  R P       L +  I+T   R
Sbjct: 2  IRTVSQLTREIYTNPVLENFDGSFRGMAQRIEQNIRQPHL--MDILNSITIYTDVHR 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,466
Number of extensions: 14549
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 15
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)