Query 034106
Match_columns 103
No_of_seqs 102 out of 179
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:43:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034106.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034106hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ho8_A Vacuolar ATP synthase s 100.0 5.8E-45 2E-49 302.9 4.7 95 1-95 375-478 (480)
2 1jdh_A Beta-catenin; beta-cate 98.1 5E-06 1.7E-10 64.4 5.4 79 9-91 450-528 (529)
3 4db6_A Armadillo repeat protei 97.8 4E-05 1.4E-09 52.9 5.8 71 21-92 138-208 (210)
4 4hxt_A De novo protein OR329; 97.7 5.4E-05 1.9E-09 52.7 4.9 74 21-95 170-243 (252)
5 4db6_A Armadillo repeat protei 97.7 5.9E-05 2E-09 52.0 5.0 77 18-95 9-85 (210)
6 2z6g_A B-catenin; FULL-length, 97.6 8.9E-05 3E-09 62.8 6.1 72 22-95 594-665 (780)
7 4db8_A Armadillo-repeat protei 97.5 5.1E-05 1.7E-09 53.6 3.0 71 21-92 180-250 (252)
8 4hxt_A De novo protein OR329; 97.4 0.00029 1E-08 48.9 5.6 73 22-95 3-75 (252)
9 4db8_A Armadillo-repeat protei 97.3 0.00035 1.2E-08 49.2 5.4 74 21-95 54-127 (252)
10 1xm9_A Plakophilin 1; armadill 97.2 0.00044 1.5E-08 54.8 5.6 77 19-95 281-362 (457)
11 4b8j_A Importin subunit alpha- 97.1 0.00081 2.8E-08 52.8 5.9 73 21-94 414-497 (528)
12 2z6h_A Catenin beta-1, beta-ca 97.1 0.00066 2.3E-08 55.3 5.4 73 21-95 457-529 (644)
13 1xqr_A HSPBP1 protein; armadil 97.1 0.00076 2.6E-08 51.7 5.5 75 21-95 124-198 (296)
14 1xqr_A HSPBP1 protein; armadil 97.0 0.0018 6E-08 49.7 7.1 73 22-95 168-240 (296)
15 3tt9_A Plakophilin-2; cell adh 96.9 0.0018 6.1E-08 48.6 6.1 71 23-94 10-82 (233)
16 3ul1_B Importin subunit alpha- 96.8 0.002 7E-08 51.4 6.0 74 22-95 101-174 (510)
17 2jdq_A Importin alpha-1 subuni 96.7 0.002 6.7E-08 48.6 4.7 73 21-94 234-306 (450)
18 1wa5_B Importin alpha subunit; 96.6 0.0037 1.3E-07 49.3 6.2 74 21-95 428-512 (530)
19 3tpo_A Importin subunit alpha- 96.6 0.0034 1.2E-07 50.2 6.0 74 22-95 120-193 (529)
20 2jdq_A Importin alpha-1 subuni 96.5 0.0046 1.6E-07 46.5 5.8 75 21-95 64-138 (450)
21 1xm9_A Plakophilin 1; armadill 96.5 0.0038 1.3E-07 49.3 5.5 72 23-95 4-75 (457)
22 3tpo_A Importin subunit alpha- 96.4 0.0041 1.4E-07 49.6 5.5 74 21-95 251-324 (529)
23 1jdh_A Beta-catenin; beta-cate 96.4 0.004 1.4E-07 48.0 4.8 74 20-94 265-340 (529)
24 4b8j_A Importin subunit alpha- 96.4 0.0056 1.9E-07 48.0 5.7 75 21-95 117-191 (528)
25 3ul1_B Importin subunit alpha- 96.3 0.0047 1.6E-07 49.3 5.2 75 20-95 231-305 (510)
26 3nmz_A APC variant protein; pr 96.2 0.009 3.1E-07 48.6 6.1 73 22-95 380-452 (458)
27 1wa5_B Importin alpha subunit; 96.1 0.0069 2.4E-07 47.7 5.2 74 21-95 257-330 (530)
28 3nmw_A APC variant protein; AR 95.9 0.015 5.1E-07 45.5 5.8 74 21-95 263-336 (354)
29 2z6h_A Catenin beta-1, beta-ca 95.8 0.009 3.1E-07 48.6 4.4 74 20-94 262-337 (644)
30 3l6x_A Catenin delta-1; cateni 95.7 0.016 5.5E-07 48.8 5.7 71 23-94 50-120 (584)
31 2z6g_A B-catenin; FULL-length, 95.0 0.077 2.6E-06 44.9 7.7 72 21-93 234-305 (780)
32 3tt9_A Plakophilin-2; cell adh 94.9 0.056 1.9E-06 40.4 6.0 73 22-95 53-126 (233)
33 3now_A UNC-45 protein, SD10334 94.7 0.07 2.4E-06 46.6 6.9 83 11-95 656-739 (810)
34 3nmw_A APC variant protein; AR 93.2 0.21 7.3E-06 38.8 6.5 74 21-94 214-293 (354)
35 3now_A UNC-45 protein, SD10334 93.2 0.096 3.3E-06 45.8 4.9 77 20-96 579-655 (810)
36 1w63_A Adapter-related protein 93.0 0.2 7E-06 41.0 6.4 68 22-95 314-381 (618)
37 2qk1_A Protein STU2; STU2P, XM 92.5 0.41 1.4E-05 35.1 6.9 71 21-92 146-219 (249)
38 3b2a_A TON_1937, putative unch 92.3 0.29 1E-05 38.1 6.0 87 6-95 17-106 (265)
39 2vgl_B AP-2 complex subunit be 92.2 0.16 5.3E-06 41.3 4.6 68 24-95 124-191 (591)
40 3ltm_A Alpha-REP4; protein eng 92.0 0.17 5.9E-06 34.6 4.0 28 65-92 82-109 (211)
41 1ibr_B P95, importin beta-1 su 91.9 0.28 9.6E-06 36.6 5.4 70 21-92 128-202 (462)
42 3ltj_A Alpharep-4; protein eng 91.8 0.26 8.8E-06 33.5 4.7 28 65-92 77-104 (201)
43 2qk2_A LP04448P; mini spindles 91.8 0.36 1.2E-05 34.2 5.7 71 21-94 133-206 (242)
44 3ltj_A Alpharep-4; protein eng 91.8 0.2 6.9E-06 34.0 4.2 28 65-92 108-135 (201)
45 3nmz_A APC variant protein; pr 91.8 0.24 8.2E-06 40.2 5.3 72 21-93 243-316 (458)
46 3ltm_A Alpha-REP4; protein eng 91.8 0.19 6.4E-06 34.4 4.0 27 65-91 113-139 (211)
47 4ffb_C Protein STU2; tubulin f 91.0 0.14 4.9E-06 37.4 2.9 69 21-92 139-211 (278)
48 2vgl_B AP-2 complex subunit be 90.9 0.13 4.3E-06 41.8 2.8 69 21-95 427-495 (591)
49 3l6x_A Catenin delta-1; cateni 90.8 0.55 1.9E-05 39.5 6.6 81 21-101 395-484 (584)
50 1oyz_A Hypothetical protein YI 90.3 0.35 1.2E-05 34.5 4.4 25 67-91 162-186 (280)
51 2qk2_A LP04448P; mini spindles 89.7 0.91 3.1E-05 32.0 6.1 71 20-92 55-126 (242)
52 1oyz_A Hypothetical protein YI 89.5 0.39 1.3E-05 34.3 4.1 28 65-92 193-220 (280)
53 1te4_A Conserved protein MTH18 89.4 0.19 6.5E-06 32.6 2.2 25 67-91 76-100 (131)
54 2qk1_A Protein STU2; STU2P, XM 89.1 0.69 2.4E-05 33.9 5.3 74 20-95 59-135 (249)
55 1b3u_A Protein (protein phosph 88.7 0.75 2.6E-05 35.4 5.4 68 21-92 164-231 (588)
56 1te4_A Conserved protein MTH18 88.6 0.17 5.8E-06 32.9 1.5 26 65-90 105-130 (131)
57 2vgl_A Adaptor protein complex 88.5 0.69 2.4E-05 38.3 5.5 70 21-94 329-399 (621)
58 2of3_A ZYG-9; multifunctional 88.4 0.67 2.3E-05 35.5 5.0 68 22-92 168-235 (266)
59 1b3u_A Protein (protein phosph 87.3 0.8 2.7E-05 35.2 4.8 66 22-91 520-585 (588)
60 4gmo_A Putative uncharacterize 87.2 0.5 1.7E-05 39.4 3.8 67 26-94 39-106 (684)
61 1ibr_B P95, importin beta-1 su 86.8 1.9 6.4E-05 32.0 6.5 73 15-93 83-159 (462)
62 2i9c_A Hypothetical protein RP 85.2 0.4 1.4E-05 33.4 1.9 48 38-85 26-78 (123)
63 3opb_A SWI5-dependent HO expre 85.1 1.3 4.5E-05 38.8 5.5 73 21-95 457-532 (778)
64 1w63_A Adapter-related protein 84.6 1.4 4.9E-05 36.0 5.3 56 33-95 118-173 (618)
65 2bpt_A Importin beta-1 subunit 83.9 2.2 7.4E-05 34.6 6.0 72 21-92 134-209 (861)
66 2ibj_A Cytochrome B5, CYTB5; F 83.1 0.35 1.2E-05 30.8 0.9 43 34-76 20-66 (88)
67 4fdd_A Transportin-1; heat rep 82.2 2.7 9.2E-05 34.9 6.0 69 21-92 215-284 (852)
68 4fdd_A Transportin-1; heat rep 81.4 0.91 3.1E-05 37.7 2.9 72 20-94 399-472 (852)
69 2vgl_A Adaptor protein complex 78.4 3.6 0.00012 34.0 5.6 71 18-95 104-179 (621)
70 1qgr_A Protein (importin beta 78.2 3.8 0.00013 33.2 5.6 71 21-93 128-203 (876)
71 1u6g_C TIP120 protein, CAND1; 77.1 1.8 6.2E-05 37.5 3.6 72 21-94 133-205 (1230)
72 1hko_A Cytochrome B5; electron 76.9 0.7 2.4E-05 30.7 0.7 43 34-76 22-68 (104)
73 1cyo_A Cytochrome B5; electron 76.6 0.63 2.2E-05 30.1 0.5 43 34-76 18-64 (93)
74 1u6g_C TIP120 protein, CAND1; 76.2 4.1 0.00014 35.2 5.5 68 21-93 48-115 (1230)
75 3lf5_A Cytochrome B5 reductase 76.1 0.4 1.4E-05 30.9 -0.6 42 34-75 19-64 (88)
76 3ner_A Cytochrome B5 type B; h 75.8 0.78 2.7E-05 29.7 0.7 44 34-77 23-70 (92)
77 1qgr_A Protein (importin beta 74.9 5.3 0.00018 32.4 5.6 70 21-94 408-480 (876)
78 3grl_A General vesicular trans 73.7 9.8 0.00033 32.8 7.1 84 10-95 112-197 (651)
79 2keo_A Probable E3 ubiquitin-p 73.5 0.58 2E-05 31.7 -0.4 42 35-76 38-83 (112)
80 1dvp_A HRS, hepatocyte growth 73.0 11 0.00039 27.1 6.5 70 21-93 42-115 (220)
81 3opb_A SWI5-dependent HO expre 72.6 3.1 0.0001 36.5 3.9 71 22-93 655-728 (778)
82 1cxy_A Cytochrome B5; helix, b 72.1 0.34 1.2E-05 31.2 -1.7 38 34-71 21-62 (90)
83 1x3x_A Cytochrome B5; hemoprot 71.4 0.59 2E-05 29.4 -0.7 32 34-66 17-50 (82)
84 1mhq_A ADP-ribosylation factor 71.0 16 0.00055 25.2 6.7 69 21-92 38-115 (148)
85 1mj4_A Sulfite oxidase; cytoch 67.3 0.97 3.3E-05 28.5 -0.3 33 35-67 20-54 (82)
86 1x5b_A Signal transducing adap 66.7 21 0.00073 24.9 6.6 59 33-93 63-125 (163)
87 1juq_A ADP-ribosylation factor 65.9 21 0.00071 25.2 6.5 68 22-92 51-127 (171)
88 3g2s_A C-terminal fragment of 65.7 21 0.00072 24.7 6.4 68 22-92 49-125 (149)
89 3o2t_A Symplekin; heat repeat, 65.2 25 0.00084 28.2 7.5 74 19-93 98-183 (386)
90 1elk_A Target of MYB1; superhe 64.8 27 0.00094 24.0 6.9 58 34-93 66-130 (157)
91 2bpt_A Importin beta-1 subunit 63.6 19 0.00065 29.0 6.6 72 21-94 224-296 (861)
92 3gs3_A Symplekin, LD45768P; he 61.7 7.4 0.00025 29.4 3.6 37 57-93 136-173 (257)
93 3ldz_A STAM-1, signal transduc 60.7 23 0.00078 24.0 5.7 69 21-92 42-113 (140)
94 2k5e_A Uncharacterized protein 60.0 5.3 0.00018 24.6 2.2 19 46-64 11-29 (73)
95 2fi0_A Conserved domain protei 58.4 5.4 0.00019 24.8 2.0 19 46-64 15-33 (81)
96 1vdy_A Hypothetical protein (R 56.8 14 0.0005 25.7 4.2 58 32-95 20-80 (140)
97 3grl_A General vesicular trans 56.1 19 0.00065 31.0 5.6 76 21-96 311-397 (651)
98 1x5b_A Signal transducing adap 53.3 32 0.0011 23.9 5.6 45 45-94 38-82 (163)
99 2bz1_A GTP cyclohydrolase II; 52.2 2.7 9.1E-05 31.0 -0.3 34 50-87 127-160 (196)
100 3u0r_A Apoptosis inhibitor 5; 51.5 19 0.00065 30.3 4.7 56 34-94 40-95 (507)
101 1juq_A ADP-ribosylation factor 51.5 33 0.0011 24.1 5.5 45 45-94 36-80 (171)
102 2k53_A A3DK08 protein; NESG, C 49.8 12 0.00039 23.3 2.5 19 46-64 9-27 (76)
103 3dad_A FH1/FH2 domain-containi 48.6 58 0.002 25.8 6.9 76 19-95 200-288 (339)
104 2xhe_A UNC18; exocytosis, exoc 47.1 9.3 0.00032 31.9 2.2 71 3-73 277-358 (650)
105 3dad_A FH1/FH2 domain-containi 46.6 25 0.00086 27.9 4.6 31 64-94 160-190 (339)
106 1kbi_A Cytochrome B2, L-LCR; f 46.5 7.7 0.00026 31.9 1.6 43 34-77 22-68 (511)
107 3zyq_A Hepatocyte growth facto 45.4 55 0.0019 23.7 6.0 69 21-92 45-117 (226)
108 3c98_A Syntaxin-binding protei 45.3 11 0.00036 31.1 2.3 58 3-60 295-353 (606)
109 1mhq_A ADP-ribosylation factor 42.5 56 0.0019 22.3 5.4 44 45-94 24-68 (148)
110 3rru_A TOM1L1 protein; structu 42.3 75 0.0026 21.9 6.0 71 21-93 53-130 (152)
111 3zyq_A Hepatocyte growth facto 42.1 28 0.00096 25.3 3.9 22 73-94 54-75 (226)
112 1epu_A S-SEC1; parallel beta-s 41.8 10 0.00035 31.0 1.6 58 3-60 280-339 (591)
113 4ffb_C Protein STU2; tubulin f 37.5 89 0.003 22.2 6.0 28 67-94 142-169 (278)
114 1wa5_C Importin alpha RE-expor 37.5 46 0.0016 28.2 5.1 55 35-93 471-525 (960)
115 3m1i_C Exportin-1; heat repeat 36.0 22 0.00074 30.6 2.8 52 41-94 519-570 (1049)
116 3tjz_B Coatomer subunit gamma; 35.8 29 0.00098 27.2 3.3 29 67-95 142-170 (355)
117 3g2s_A C-terminal fragment of 33.3 89 0.003 21.4 5.2 22 73-94 57-78 (149)
118 1dvp_A HRS, hepatocyte growth 32.9 72 0.0025 22.7 4.9 24 72-95 50-73 (220)
119 3b2a_A TON_1937, putative unch 32.9 43 0.0015 25.9 3.8 28 67-94 36-63 (265)
120 1sox_A Sulfite oxidase; oxidor 32.7 7 0.00024 32.0 -0.7 26 42-67 29-54 (466)
121 2kvp_A Talin-1; VBS, vinculin, 32.5 49 0.0017 23.6 3.8 48 33-91 68-115 (165)
122 3ldz_A STAM-1, signal transduc 31.7 93 0.0032 20.8 5.0 22 73-94 51-72 (140)
123 2r9g_A AAA ATPase, central reg 31.2 49 0.0017 24.6 3.7 70 20-95 47-121 (204)
124 2db0_A 253AA long hypothetical 30.3 1E+02 0.0036 23.5 5.5 74 19-98 101-179 (253)
125 1zl8_A LIN-7; heterodimer, alp 29.8 19 0.00065 21.6 1.0 33 68-101 11-45 (53)
126 2b0h_A Talin-1; vinculin, heli 29.7 1.2E+02 0.0042 20.9 5.4 48 33-91 40-87 (137)
127 1ekj_A Beta-carbonic anhydrase 29.2 18 0.00062 26.4 1.1 36 10-45 19-54 (221)
128 3mfq_A TROA, high-affinity zin 28.7 60 0.0021 24.1 3.9 49 5-53 131-180 (282)
129 1dn1_A NSEC1, syntaxin binding 27.0 24 0.00082 29.3 1.6 72 3-74 283-359 (594)
130 3ecm_A High affinity CAMP-spec 26.7 20 0.00069 27.8 1.0 39 37-76 108-160 (338)
131 1toa_A Tromp-1, protein (perip 26.6 50 0.0017 25.0 3.2 49 5-53 165-214 (313)
132 1elk_A Target of MYB1; superhe 25.6 1.6E+02 0.0055 20.0 5.6 45 45-94 39-84 (157)
133 3gi1_A LBP, laminin-binding pr 25.3 73 0.0025 23.6 3.9 47 5-53 149-196 (286)
134 2fk8_A Methoxy mycolic acid sy 24.9 19 0.00064 26.1 0.5 47 4-51 60-106 (318)
135 1j03_A Putative steroid bindin 24.5 25 0.00085 22.9 1.0 41 36-78 21-66 (102)
136 3p14_A L-rhamnose isomerase; T 24.4 48 0.0016 27.2 2.8 22 72-93 151-172 (424)
137 3gjx_A Exportin-1; transport, 23.6 56 0.0019 29.3 3.3 71 20-92 520-594 (1073)
138 3tjz_B Coatomer subunit gamma; 23.5 1.2E+02 0.0042 23.6 5.0 66 22-93 140-205 (355)
139 2w3q_A Carbonic anhydrase 2; l 23.0 36 0.0012 25.3 1.7 17 29-45 58-74 (243)
140 2x1g_F Cadmus; transport prote 23.0 61 0.0021 27.2 3.3 75 21-95 39-116 (971)
141 3bcz_A Protein MEMO1; alpha/be 22.1 46 0.0016 25.0 2.2 55 20-79 163-226 (293)
142 1nkl_A NK-lysin; saposin fold, 21.7 1.4E+02 0.0047 17.8 4.9 55 22-80 10-68 (78)
143 3k4t_A Virion-associated prote 21.5 81 0.0028 20.9 3.0 45 24-69 26-78 (95)
144 3qy1_A Carbonic anhydrase; str 21.3 41 0.0014 24.8 1.7 16 30-45 32-47 (223)
145 3hh8_A Metal ABC transporter s 21.3 69 0.0023 24.0 3.0 49 5-53 151-200 (294)
146 2prs_A High-affinity zinc upta 21.2 74 0.0025 23.4 3.2 47 5-53 144-191 (284)
147 1tbf_A CGMP-specific 3',5'-cyc 21.2 87 0.003 24.4 3.7 37 38-76 135-185 (347)
148 4gmo_A Putative uncharacterize 21.1 54 0.0018 27.1 2.6 27 69-95 39-65 (684)
149 3g80_A Protein B2; RNA-binding 20.5 63 0.0021 21.4 2.3 33 47-82 27-60 (97)
150 1wjt_A Transcription elongatio 20.2 1.9E+02 0.0064 18.8 6.3 67 20-91 15-82 (103)
151 1z8m_A Conserved hypothetical 20.2 1.1E+02 0.0037 17.9 3.3 28 3-31 6-35 (88)
No 1
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=100.00 E-value=5.8e-45 Score=302.92 Aligned_cols=95 Identities=26% Similarity=0.489 Sum_probs=92.6
Q ss_pred CCCChhHHHHhHHhhhhccHHHHHHHHHHhcc---------CCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHh
Q 034106 1 MHKDPLFWHDNITNFEENDFQILRVLLTILDT---------SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK 71 (103)
Q Consensus 1 ~H~se~FW~ENa~kf~e~~~~llk~L~~lL~~---------s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~ 71 (103)
||+||+||+||+.||+||||+++|+|++||++ |+||+++||||||||||||+||+||.+++++|||++||+
T Consensus 375 ~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~ 454 (480)
T 1ho8_A 375 PHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIME 454 (480)
T ss_dssp GGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHH
T ss_pred CccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHH
Confidence 69999999999999999999999999999974 569999999999999999999999999999999999999
Q ss_pred hhcCCCHHhHHHHHHHHHHHhcch
Q 034106 72 LMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 72 Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
||+|+||+||||||+|+||+|+++
T Consensus 455 Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 455 LLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998
No 2
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.05 E-value=5e-06 Score=64.39 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=66.7
Q ss_pred HHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHH
Q 034106 9 HDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCI 88 (103)
Q Consensus 9 ~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~av 88 (103)
.+|...+.+. ..+..|+++|. +.++.+...|+..|+.+.. .|.++..+.+.|+...+++|+.|+|++|++.|..++
T Consensus 450 ~~~~~~l~~~--~~v~~l~~ll~-~~~~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL 525 (529)
T 1jdh_A 450 VHNRIVIRGL--NTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525 (529)
T ss_dssp HHHHHHHHHT--TCHHHHHHGGG-CSCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred chHHHHHhcc--CCccHHHHHHc-CCchHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHH
Confidence 4555555554 46789999995 5678888999999999885 588999999999999999999999999999999999
Q ss_pred HHH
Q 034106 89 QRL 91 (103)
Q Consensus 89 Qkl 91 (103)
+.|
T Consensus 526 ~~l 528 (529)
T 1jdh_A 526 FRM 528 (529)
T ss_dssp HHH
T ss_pred Hhc
Confidence 875
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.79 E-value=4e-05 Score=52.90 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=64.7
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
..+..|+++|. +.|+.+..-||.=|+.++...|..+..+.+.|+-..+.+++.++|++||.+|+.++..+-
T Consensus 138 ~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 138 GALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp THHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 47899999995 568888999999999999988999999999999999999999999999999999998874
No 4
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.67 E-value=5.4e-05 Score=52.69 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=67.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|+++|. +.|+.+..-||.=|+.++...|..+..+.+.|+-..+++++.++|++||.+|+.++..+....
T Consensus 170 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 170 GGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp THHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 47899999995 678888889999999999989999988988999999999999999999999999999998765
No 5
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.67 E-value=5.9e-05 Score=52.01 Aligned_cols=77 Identities=22% Similarity=0.217 Sum_probs=65.6
Q ss_pred ccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 18 ~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
........|..+| .++|+.+..-||.-|+.+.+..|..+..+-+.|+=..++++|.++|++|+.+|+.++..+..++
T Consensus 9 ~~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 9 HHGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp ----CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 3445567888888 5778999999999999999999999988888899999999999999999999999999987544
No 6
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.60 E-value=8.9e-05 Score=62.83 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=65.0
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|+++|. +.++.+...|+.-|+.++ ..|.++..+.+.|+...+++|+.|+|++||+.|+.|+..+..+.
T Consensus 594 ~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 594 TIPLFVQLLY-SPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp CHHHHHHGGG-CSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHc-CCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 5889999994 678888999999999987 45889999999999999999999999999999999999998765
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.51 E-value=5.1e-05 Score=53.60 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=64.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
..+..|+++|. +.|+.+..-||.=|+.++...|.++..+.+.|+-..+++++.++|++||.+|..++..+.
T Consensus 180 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 180 GALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred CCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 46889999995 558888899999999999999999999888999999999999999999999999998764
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.39 E-value=0.00029 Score=48.93 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=65.1
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|+++|. +.|+.+..-||.=|+.+....|+.+..+-+.|+=..+++++.++|++|+.+|+.++..+..++
T Consensus 3 ~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 3 DVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 4678999994 566888889999999999999988888888899999999999999999999999999998763
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.32 E-value=0.00035 Score=49.24 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=65.7
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|+++|. +.++.+..-||.=|+.+....|+.+..+-+.|+=..+++++.++|++|+..|+.++..+-.+.
T Consensus 54 g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 127 (252)
T 4db8_A 54 GALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127 (252)
T ss_dssp THHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Confidence 46788999995 556888888999999999989999999999999999999999999999999999999887654
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.23 E-value=0.00044 Score=54.78 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccc-----hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034106 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-----GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~-----gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
+...++.|+.+|..++++.++.-||--|+.+++..+. ++.++.+.|+-..+++|+.++|++|+++|..+++.+-.
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 4578999999998888899999999999999875432 25677778999999999999999999999999998865
Q ss_pred ch
Q 034106 94 GA 95 (103)
Q Consensus 94 ~~ 95 (103)
+.
T Consensus 361 ~~ 362 (457)
T 1xm9_A 361 HP 362 (457)
T ss_dssp SG
T ss_pred CH
Confidence 44
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.10 E-value=0.00081 Score=52.81 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccc-----------hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-----------GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ 89 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~-----------gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 89 (103)
.++..|+++|. +.|+.+..+|+.=|+.+++..+. ....+++.|+-+++..|+.|+|++|+..|...++
T Consensus 414 ~~i~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~ 492 (528)
T 4b8j_A 414 GCIKPLCDLLI-CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 492 (528)
T ss_dssp TCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46888999995 57888899999999999988765 6778899999999999999999999999999999
Q ss_pred HHhcc
Q 034106 90 RLFLG 94 (103)
Q Consensus 90 klm~~ 94 (103)
++...
T Consensus 493 ~~~~~ 497 (528)
T 4b8j_A 493 AYWMD 497 (528)
T ss_dssp HHCC-
T ss_pred HHCCC
Confidence 98754
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.08 E-value=0.00066 Score=55.34 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=64.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|+++|. +.++.+...|+.-|+.+.+ .|+++..+.+.|+-..+.+|+.|+|++||..|..++..+..+.
T Consensus 457 ~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 457 NTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TCHHHHHHHTT-CSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 46788999994 5677788889988999886 4889999999999999999999999999999999999988655
No 13
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.08 E-value=0.00076 Score=51.75 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=66.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|+++|+.+.++.+..-|+.=|+.+++.+|.+...+.+.||=..+..++.++|++|+.+|..++..+..++
T Consensus 124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~ 198 (296)
T 1xqr_A 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 198 (296)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 468899999965557788889999999999999998877777899999999999999999999999999987653
No 14
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.03 E-value=0.0018 Score=49.69 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=66.3
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|+.+|. +.|+.+..-||.=|+.++...|+-+..+-+.|+=..+..||.++|++|+..|+.|+..++...
T Consensus 168 gi~~L~~lL~-~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 168 GFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 6788999995 578999999999999999999988888888899999999999999999999999999988664
No 15
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.91 E-value=0.0018 Score=48.60 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=61.3
Q ss_pred HHHHHHHhccCCCc--ceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 23 LRVLLTILDTSSDP--RALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 23 lk~L~~lL~~s~d~--~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+..|+++|. |.|+ .+..-|+--|..+....|.-|..+-+.|+=..+.+||.+++++|+.+|.-|+.-|-..
T Consensus 10 i~~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 10 LERAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp HHHHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 567899994 5566 6666777789999988888888888889999999999999999999999999998764
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.81 E-value=0.002 Score=51.43 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=64.2
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
++-.|+++|+.+++|.+..-||-=|+.++..-|+-+..+-+.|+=..+.+||.+++++||.+|+.|+..+-.++
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 56789999976777777767888888888888888888888899999999999999999999999999988765
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.67 E-value=0.002 Score=48.57 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=63.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.++..|+++|. +.|+.+..-||.=||.++...|..+..+-+.|+=..+++++.+++++||.+|+.++..+...
T Consensus 234 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~ 306 (450)
T 2jdq_A 234 GVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG 306 (450)
T ss_dssp TTHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHC-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 36888999994 66788888899999999988887777666679999999999999999999999999998853
No 18
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.63 E-value=0.0037 Score=49.29 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=62.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccc-----------hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-----------GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ 89 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~-----------gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 89 (103)
.++..|+.+|. +.|+.+...|+.=|+.+++..|. ....+.+.|+...+..|.+|+|++|+..|..++.
T Consensus 428 ~~l~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 428 GCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp TCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 47889999995 56888888899889999887764 3456788899999999999999999999999999
Q ss_pred HHhcch
Q 034106 90 RLFLGA 95 (103)
Q Consensus 90 klm~~~ 95 (103)
++....
T Consensus 507 ~~~~~~ 512 (530)
T 1wa5_B 507 TYFGEE 512 (530)
T ss_dssp HHSSSC
T ss_pred HHCCcc
Confidence 887543
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.62 E-value=0.0034 Score=50.16 Aligned_cols=74 Identities=9% Similarity=0.141 Sum_probs=62.0
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
++-.|+++|..++++.+..-||-=|+.++..-|+-+..+-+.|+-..+..|+.+++++|+.+|+.|+..+..++
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~ 193 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG 193 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 56778888876667766666777788888888777777777899999999999999999999999999998765
No 20
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.51 E-value=0.0046 Score=46.54 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=61.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++..|+++|..++|+.+..-||.=|+.+....|+....+-+-|+=..+.+++.++|++||.+|+.++..+....
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~ 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS 138 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC
Confidence 578888999965547777777888888888877766665556789999999999999999999999999988654
No 21
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.49 E-value=0.0038 Score=49.34 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=62.9
Q ss_pred HHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+..|+++|. |.|+.+..-|+--|+.+....|+-|..+-+.|+=..+.+++.+++++++.+|..|+..|-..+
T Consensus 4 l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 4 IPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp HHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 567889994 668888888999999999888888867778899999999999999999999999999998763
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.44 E-value=0.0041 Score=49.65 Aligned_cols=74 Identities=24% Similarity=0.380 Sum_probs=64.3
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++..|+++| .+.|+.++.-||.=|+.+....++-...+..-|+-..+++|+.++++.|+..|+.|+..+..++
T Consensus 251 ~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 324 (529)
T 3tpo_A 251 QILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 324 (529)
T ss_dssp HHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc
Confidence 5677888888 5678888888999999998887777777778899999999999999999999999999987655
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.38 E-value=0.004 Score=48.01 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcC--CCHHhHHHHHHHHHHHhcc
Q 034106 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH--ENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm~~ 94 (103)
-..+..|+++| .+.|+.+..-||.-|+.+....|..+..+-+.|+-..+++++.+ ++++|+..|+.++..+..+
T Consensus 265 ~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 265 EGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 36788899999 56788889999999999999888899999899999999999976 3489999999999988754
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.35 E-value=0.0056 Score=47.98 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=65.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++..|+++|..++++.+..-||.=|+.+....|+.+..+-+.|+=..++.++.+++++||.+|+.++..+....
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 191 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS 191 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence 467889999965555888888899999999988888888888899999999999999999999999999987554
No 25
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.34 E-value=0.0047 Score=49.33 Aligned_cols=75 Identities=24% Similarity=0.358 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..++..|+++| .+.|+.++.-||.=|+.+....++....+..-|+-.++++|+.++++.|+..|+.|+..+...+
T Consensus 231 ~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~ 305 (510)
T 3ul1_B 231 EQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305 (510)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC
Confidence 35677888888 5678888888999999998888888888888899999999999999999999999999887655
No 26
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.18 E-value=0.009 Score=48.60 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=64.6
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|+++|. +.+..+..-||-=|+.+....|+.+..+-+.|+=..+.+|+.+++++++.+|.-++.-|..++
T Consensus 380 ~i~~Lv~LL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 380 CLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHSS-CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 4788999995 556667777888899998778899999989999999999999999999999999999999887
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.15 E-value=0.0069 Score=47.73 Aligned_cols=74 Identities=27% Similarity=0.400 Sum_probs=63.7
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++..|+++|. +.|+.+..-||.=|+.++...|..+..+-+.|+=..++++|.+++++|+..|+.++..+....
T Consensus 257 ~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 257 QALPTLAKLIY-SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp GGHHHHHHHTT-CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 56788889984 567888888999999999888877777777799999999999999999999999999887543
No 28
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.85 E-value=0.015 Score=45.48 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=64.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|+++|. +.++.+..-||-=|+.++...|+.+..+-+.|+=..+.+|+.++++++|.+|..++..|..++
T Consensus 263 g~i~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 263 NCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp THHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHc-CCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 35889999995 556667777888888888778889999999999999999999999999999999999999776
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.77 E-value=0.009 Score=48.63 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCC-C-HHhHHHHHHHHHHHhcc
Q 034106 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE-N-TEVTKSALLCIQRLFLG 94 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~-d-~eVr~eAL~avQklm~~ 94 (103)
-.++..|+++|. +.|+.+..-||.-|+.+....|..+..+-+.|+-..+++++.+. + ++|+..|+.++..+..+
T Consensus 262 ~~~i~~Lv~lL~-~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 262 EGLLGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred hhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence 367888999994 67888899999999999998888888888899999999999873 3 89999999999998754
No 30
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.66 E-value=0.016 Score=48.78 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=63.0
Q ss_pred HHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+..|+++|. |.|+.+..-|+--|..++...+..|..+-+.|+=..+.+||.+++++|+.+|.-|+..|-.+
T Consensus 50 i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 50 LPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 678899994 66777777788889999988888899999999999999999999999999999999999874
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.96 E-value=0.077 Score=44.88 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=64.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
..+..|+++|. +.++.+..-|+.=|+.++..+++.+..+.+.|+-..+.++|.+++++|+..|+.+++.+-.
T Consensus 234 g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 234 GGIPALVNMLG-SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305 (780)
T ss_dssp THHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 57889999994 5678888899999999999999999999888999999999999999999999999886664
No 32
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.90 E-value=0.056 Score=40.36 Aligned_cols=73 Identities=15% Similarity=0.209 Sum_probs=63.1
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHHHHhcch
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|+++| .|.++.+..-||-=|+-+....|+.|..+-+-||=..+.+|+. +++++++.+|.-++.-|-.+.
T Consensus 53 ~Ip~LV~lL-~s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 53 GILKLLQLL-KVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp HHHHHHHGG-GCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred CHHHHHHHH-cCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 467899999 4678888889999999999888889999999999999999997 589999999988887776544
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.67 E-value=0.07 Score=46.63 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=67.0
Q ss_pred hHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccc-hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034106 11 NITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ 89 (103)
Q Consensus 11 Na~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~-gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 89 (103)
+..+|.+ +...++.|+.+|+ +.|+.+..-||-=|+.+....|. .+.+++.-|+-..+.+|+.++|++|+++|+.|+.
T Consensus 656 ~~~~~v~-~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~ 733 (810)
T 3now_A 656 VIKMFEG-NNDRVKFLALLCE-DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733 (810)
T ss_dssp HHHHHHS-SSSHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHh-ccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3444542 3468999999994 57888888899999999987774 5666664688889999999999999999999999
Q ss_pred HHhcch
Q 034106 90 RLFLGA 95 (103)
Q Consensus 90 klm~~~ 95 (103)
-+..++
T Consensus 734 NL~~~s 739 (810)
T 3now_A 734 NMINAG 739 (810)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 988654
No 34
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.22 E-value=0.21 Score=38.83 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=56.5
Q ss_pred HHHHHHHHHhccCCCcc---eeehhcchhHHHHH---HccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 21 QILRVLLTILDTSSDPR---ALAVACFDLSQFIQ---YHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~---~laVAc~Digefvr---~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
..+..|+++|...++.. +..-||-=|..+.. -.|++|..+.+-|+=..+.+||.+++++++.+|.-|+..+-..
T Consensus 214 Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 293 (354)
T 3nmw_A 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 293 (354)
T ss_dssp THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC
Confidence 46788999996444331 33334444444444 4788999999999999999999999999999999999988743
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.18 E-value=0.096 Score=45.77 Aligned_cols=77 Identities=13% Similarity=0.253 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcchh
Q 034106 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAK 96 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~~ 96 (103)
.+.+..|+++|....+.....-||-=|+.+...-+..+..+-+-|+=.++.+||.|+++.|+..|+.|+..++.+.+
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~ 655 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH
Confidence 35789999999532232222346666777776666656555556899999999999999999999999999987764
No 36
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.05 E-value=0.2 Score=41.05 Aligned_cols=68 Identities=16% Similarity=0.182 Sum_probs=54.1
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|..+| .++|+.+--+|+.=|+.+++.+|. ++.. ....|+.++.++|+.||..||.++.++....
T Consensus 314 a~~~L~~~L-~~~d~~vr~~aL~~L~~i~~~~p~---~~~~--~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 314 AINILGRFL-LNNDKNIRYVALTSLLKTVQTDHN---AVQR--HRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp HHHHHHHHH-TCSSTTTHHHHHHHHHHHHHHHHH---HHGG--GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHH-hCCCCchHHHHHHHHHHHHhhCHH---HHHH--HHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 456777777 457888888899999999998874 3433 5578999999999999999999998887543
No 37
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.52 E-value=0.41 Score=35.13 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=54.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccch-hHHHHhh--ChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDL--KAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g-r~i~~~l--g~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
.++..|...|+ +.+|.+-.-++.=|+.++...|.. ..+...+ ..=..++++|++++++||-.|..|+-.++
T Consensus 146 ~ll~~l~~~l~-~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 146 DMLKDILEHMK-HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 67788888884 457887777888889999888653 3333334 35578899999999999999988877765
No 38
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=92.28 E-value=0.29 Score=38.15 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=68.0
Q ss_pred hHHH-HhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccc--hhHHHHhhChHHHHHhhhcCCCHHhHH
Q 034106 6 LFWH-DNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA--GRVIVTDLKAKERVMKLMNHENTEVTK 82 (103)
Q Consensus 6 ~FW~-ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~--gr~i~~~lg~K~~vM~Lm~h~d~eVr~ 82 (103)
++|+ --+..+-+.+-+.+-.|..+| ..+|+.+..=|..=|++.++..|. .+.++++ .=++|.+++.++|+.|.-
T Consensus 17 ~sWkiK~a~ela~~~e~~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~dEkval 93 (265)
T 3b2a_A 17 LSWQILDAVSLALEDKRALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQENEKVTI 93 (265)
T ss_dssp HTTCHHHHHHHHHHCHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCSTTHHHHH
T ss_pred HHhhHHHHHHHHHhchhHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhccchhHHH
Confidence 3554 233334444556888999999 567888888899999999999874 5555666 458899999999999999
Q ss_pred HHHHHHHHHhcch
Q 034106 83 SALLCIQRLFLGA 95 (103)
Q Consensus 83 eAL~avQklm~~~ 95 (103)
.|++|+-.++.+.
T Consensus 94 ~A~r~L~~LLe~v 106 (265)
T 3b2a_A 94 KALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998765
No 39
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=92.18 E-value=0.16 Score=41.29 Aligned_cols=68 Identities=16% Similarity=0.200 Sum_probs=49.0
Q ss_pred HHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 24 RVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 24 k~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..|.++| .+.+|.+-.-||-=++.+.+.+|+ ++.+-+.-..+.++++++|+.|+..|+.++..+..++
T Consensus 124 ~~l~~~L-~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 124 EPLRKCL-KDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHS-SCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHc-CCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 3366666 356777777777777888777776 3333345678888888889999999999988877554
No 40
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.99 E-value=0.17 Score=34.62 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=20.8
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 65 AKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+-..+++++.++|++||..|+.++.++-
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4466777778888888888888877764
No 41
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.93 E-value=0.28 Score=36.59 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccCC-CcceeehhcchhHHHHHHc-cch-hHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHHHh
Q 034106 21 QILRVLLTILDTSS-DPRALAVACFDLSQFIQYH-PAG-RVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~-d~~~laVAc~Digefvr~~-p~g-r~i~~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQklm 92 (103)
+++-.|++.+.+++ |+.+...|+.=++.+++.+ |.. ...+. ..-..++.+++++ +++||+.|+.|+..++
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 57778888885432 7777777888888888876 321 11112 2456678888888 8999999999998865
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.83 E-value=0.26 Score=33.46 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.0
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 65 AKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+-..+++++.++|+.||..|+.++..+-
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 104 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQIG 104 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 5667788888899999999999888764
No 43
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.82 E-value=0.36 Score=34.15 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=51.5
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHc-cc--hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYH-PA--GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~-p~--gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.++..|...|+ +.+|.+-.-++.=|+.++..+ |. +...+.. .=..++.++++++++||..|..|+..++..
T Consensus 133 ~ll~~l~~~l~-~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~--l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 133 AQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKL--LTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH--HHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH--HHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 45666667774 457777777788888877666 43 3444444 346788889999999999999999988743
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.82 E-value=0.2 Score=33.99 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=24.0
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 65 AKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+-..+.+++.++|+.||..|+.++..+-
T Consensus 108 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 135 (201)
T 3ltj_A 108 AVEPLIKALKDEDWFVRIAAAFALGEIG 135 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 5578888999999999999999988764
No 45
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=91.81 E-value=0.24 Score=40.18 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=58.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHH-ccchhHHHHhhChHHHHHhh-hcCCCHHhHHHHHHHHHHHhc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQY-HPAGRVIVTDLKAKERVMKL-MNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~-~p~gr~i~~~lg~K~~vM~L-m~h~d~eVr~eAL~avQklm~ 93 (103)
..+..|+++|. +.|+.+..-||-=|+.+... .+..|..+-+.|+=..++++ +.+++++++..|+.|+.-|-.
T Consensus 243 GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 243 GCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc
Confidence 35889999995 67888888888888877653 45678888888999999996 567899999999999988776
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.76 E-value=0.19 Score=34.44 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=18.3
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106 65 AKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+-..+.+++.++|++||..|+.++..+
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 445666667777777777777777665
No 47
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.03 E-value=0.14 Score=37.36 Aligned_cols=69 Identities=13% Similarity=0.255 Sum_probs=43.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccch----hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG----RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g----r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
.++..|...+ ++.+|.+.+-++.=|+..++.++.. +..+.. +-..+..+++|+|++||-.|..++-.++
T Consensus 139 ~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~~--i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 139 QSVELVIPFF-EKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLPE--LLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHH--HGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHHH--HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3444444444 3567777777777788887776321 111111 1124556789999999999999886665
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=90.92 E-value=0.13 Score=41.81 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=50.7
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|++.|+...+|.+.++++.=||||....|+...+++.+ .+-+..++++||..+|.|+-|+....
T Consensus 427 ~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l------~~~~~~~~~~vr~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 427 SIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESF------LEGFHDESTQVQLTLLTAIVKLFLKK 495 (591)
T ss_dssp TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH------STTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHH------HHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 3456677777655677788888888899888887765555543 22344678999999999999998754
No 49
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=90.80 E-value=0.55 Score=39.47 Aligned_cols=81 Identities=10% Similarity=0.117 Sum_probs=65.6
Q ss_pred HHHHHHHHHhccCC-C------cceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHHH
Q 034106 21 QILRVLLTILDTSS-D------PRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQRL 91 (103)
Q Consensus 21 ~llk~L~~lL~~s~-d------~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQkl 91 (103)
..+..|+++|..++ + ..+++=||.=|+.++---|.-+..+.+.|+=..+..|+.+. .+.++..|-.+++-|
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 57889999996543 2 24556688889999888888888888999999999999875 899999999999999
Q ss_pred hcchhhhhhh
Q 034106 92 FLGAKYASFL 101 (103)
Q Consensus 92 m~~~~~~~~~ 101 (103)
..+++.-+.+
T Consensus 475 ~~~~elr~~~ 484 (584)
T 3l6x_A 475 WGYKELRKPL 484 (584)
T ss_dssp HTSHHHHHHH
T ss_pred HcCHHHHHHH
Confidence 8777554433
No 50
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.31 E-value=0.35 Score=34.52 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=13.6
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106 67 ERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
..+.+++.++|++||+.|..++..+
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 3445555555555555555555444
No 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=89.66 E-value=0.91 Score=31.99 Aligned_cols=71 Identities=10% Similarity=0.109 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g-r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
.+++..|.++|.+..++.+..-||.=||.+++..+.. ...++. .=..|++.+.++++.||..|..|+..++
T Consensus 55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~--ilp~ll~~l~d~~~~vr~~a~~aL~~~~ 126 (242)
T 2qk2_A 55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA--CVPSLLEKFKEKKPNVVTALREAIDAIY 126 (242)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4788889998853568888788899999988765321 011111 1233444445555555555555555554
No 52
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=89.51 E-value=0.39 Score=34.26 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=21.4
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 65 AKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+-..+..++.++|++||..|+.++..+-
T Consensus 193 ~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 193 IRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3456777788888888888888887764
No 53
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=89.44 E-value=0.19 Score=32.62 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=15.5
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106 67 ERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
..+.+++.++|+.||..|..++.++
T Consensus 76 ~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 76 EPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4455556666666666666666554
No 54
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.09 E-value=0.69 Score=33.87 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchhHHHHHHcc-ch-h-HHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHP-AG-R-VIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p-~g-r-~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++++.|.+.|.+..++.+...||+=||++++... .+ . ..... .=..|++.+.+..+.|+-.|-.|+..++.+-
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 68899999999555677888999999999998774 22 1 23322 2246778888889999999999998888654
No 55
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=88.71 E-value=0.75 Score=35.41 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+++..|.+++ ..+|+.+-.-|+.=+|.+++..|.. .... ..-..++.++++++++||..|+.++..+.
T Consensus 164 ~l~~~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~--~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 164 ELRQYFRNLC-SDDTPMVRRAAASKLGEFAKVLELD-NVKS--EIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHTSCHH-HHHH--THHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcHH-hHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 3445555555 3467777778888899998887532 1112 23345667778888888888888877765
No 56
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=88.61 E-value=0.17 Score=32.86 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=21.4
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHH
Q 034106 65 AKERVMKLMNHENTEVTKSALLCIQR 90 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQk 90 (103)
+-..+.+++.++|+.||..|..++.+
T Consensus 105 a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 105 VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 34567788899999999999998754
No 57
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=88.51 E-value=0.69 Score=38.25 Aligned_cols=70 Identities=11% Similarity=0.069 Sum_probs=55.2
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHHHHhcc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~ 94 (103)
..+..|..+| .++|+.+--+|+.=|..++..+|. ...+.. ....++..+. ++|+.||..||..+.++...
T Consensus 329 ~~~~~L~~~L-~~~~~niry~aL~~l~~l~~~~~~-~~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 329 RACNQLGQFL-QHRETNLRYLALESMCTLASSEFS-HEAVKT--HIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHHHHHHHHS-SCSCHHHHHHHHHHHHHHTTCTTT-HHHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHh-cCCCcchHHHHHHHHHHHHhccCc-HHHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 3566777777 467888888999999999998875 234444 4678888888 99999999999999888744
No 58
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=88.37 E-value=0.67 Score=35.47 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=49.4
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
++..|.+-+ +|.++.+-+-.|.=|+.++..|.-. -..-+....-|+.+++++|++||-.|+.|+-.+.
T Consensus 168 v~~~l~~g~-ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 168 MTPMLLDAL-KSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 555555555 5778888888889999999988533 1111112266999999999999999999986554
No 59
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=87.27 E-value=0.8 Score=35.25 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=37.0
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
++..|.+.|. ..++.+-..+|.=+|.+++.. |...+.. .....+.+|++.+|++||..|..|+..+
T Consensus 520 ~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~-~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 520 MLPTVLRMAG-DPVANVRFNVAKSLQKIGPIL--DNSTLQS-EVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp THHHHHHGGG-CSCHHHHHHHHHHHHHHGGGS--CHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhhCC-CCCchHHHHHHHHHHHHHHHh--chhhhHH-HHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 3334444442 344555555666666666655 3333321 2334455566777888888877777654
No 60
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=87.19 E-value=0.5 Score=39.43 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=52.5
Q ss_pred HHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChH-HHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 26 LLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAK-ERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 26 L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K-~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
|++.| .|.|+..-.-||.=|+.++. -|.-|..+.+-|+= ..|-.++.+++++||-+|.-|+.-|-..
T Consensus 39 ll~~L-~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 39 VLKDL-KSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHH-SSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44456 57888888899999999996 67777777776654 4566789999999999999888766543
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=86.83 E-value=1.9 Score=32.05 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=51.1
Q ss_pred hhhccHHHHH-HHHHHhccCCCcceeehhcchhHHHHHHc-cchhHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHH
Q 034106 15 FEENDFQILR-VLLTILDTSSDPRALAVACFDLSQFIQYH-PAGRVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQR 90 (103)
Q Consensus 15 f~e~~~~llk-~L~~lL~~s~d~~~laVAc~Digefvr~~-p~gr~i~~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQk 90 (103)
+.++..+.+| .|+..|. +.++.+ ..+|.=|+.++++. |++. . -+.=..+++.++++ |+++|..|+.++..
T Consensus 83 l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ia~~~~~~~~--w--~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLG-TETYRP-SSASQCVAGIACAEIPVNQ--W--PELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp SCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHHHHHHHGGGTC--C--TTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHHHHHHhccccc--c--HHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 4334444444 4788884 456667 88888899999884 6431 1 13445667778888 99999999999999
Q ss_pred Hhc
Q 034106 91 LFL 93 (103)
Q Consensus 91 lm~ 93 (103)
+..
T Consensus 157 l~~ 159 (462)
T 1ibr_B 157 ICQ 159 (462)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 62
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=85.18 E-value=0.4 Score=33.37 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=37.8
Q ss_pred eeehhcchhHHHHHHccchhHHHHhh----C-hHHHHHhhhcCCCHHhHHHHH
Q 034106 38 ALAVACFDLSQFIQYHPAGRVIVTDL----K-AKERVMKLMNHENTEVTKSAL 85 (103)
Q Consensus 38 ~laVAc~Digefvr~~p~gr~i~~~l----g-~K~~vM~Lm~h~d~eVr~eAL 85 (103)
.-|+--.|.+.|-|+|-.=..+..+| | +..-++.|++|||+.||..|=
T Consensus 26 ~eA~~~~d~~~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n~~VRl~AA 78 (123)
T 2i9c_A 26 DDALLGNQISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAA 78 (123)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCccHHHHHH
Confidence 35778899999999997655555554 4 666799999999999998763
No 63
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=85.07 E-value=1.3 Score=38.80 Aligned_cols=73 Identities=5% Similarity=0.056 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHH---hHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTE---VTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~e---Vr~eAL~avQklm~~~ 95 (103)
.++..|+.++ +|.++.+..-|+-=|+.+... |.+|..+-+-||=..++.++.+..+. +|..|..|+.++....
T Consensus 457 GvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 457 ELISFLKREM-HNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp THHHHHHHHG-GGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 4888899999 456778788888888888754 88999888889988899999877544 8999999999998543
No 64
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=84.58 E-value=1.4 Score=35.99 Aligned_cols=56 Identities=21% Similarity=0.217 Sum_probs=39.3
Q ss_pred CCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 33 s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+.||.+-+.|+.=||.+. +..+++. .-..|..++.|++|.||+.|..|+-++....
T Consensus 118 ~~n~~vr~lAL~~L~~i~-----~~~~~~~--l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~ 173 (618)
T 1w63_A 118 HSTQFVQGLALCTLGCMG-----SSEMCRD--LAGEVEKLLKTSNSYLRKKAALCAVHVIRKV 173 (618)
T ss_dssp CSSSHHHHHHHHHHHHHC-----CHHHHHH--HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHhHHHHHHHHHHhcC-----CHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 556666666666666664 2234443 3466788889999999999999998887543
No 65
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=83.91 E-value=2.2 Score=34.59 Aligned_cols=72 Identities=6% Similarity=0.079 Sum_probs=44.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhh--ChHHHHHhhhcCC--CHHhHHHHHHHHHHHh
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL--KAKERVMKLMNHE--NTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~l--g~K~~vM~Lm~h~--d~eVr~eAL~avQklm 92 (103)
+++..|++.+.+++|+.+...|+.=++.+++.++..-+++... ..-..++..+.++ +++||..|+.|+..++
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSL 209 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 5777777777433266666666666777776654211011110 1233456677887 8999999999998875
No 66
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=83.13 E-value=0.35 Score=30.84 Aligned_cols=43 Identities=19% Similarity=0.453 Sum_probs=31.9
Q ss_pred CCcceeehh--cchhHHHHHHccchhHHHHhhChH--HHHHhhhcCC
Q 034106 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 76 (103)
Q Consensus 34 ~d~~~laVA--c~Digefvr~~p~gr~i~~~lg~K--~~vM~Lm~h~ 76 (103)
.++.+++|- .+|+..|+..||.|..++....|+ +..+.-..|+
T Consensus 20 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs 66 (88)
T 2ibj_A 20 KDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66 (88)
T ss_dssp TTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCC
T ss_pred CCCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCC
Confidence 455566664 789999999999999998887666 4555544565
No 67
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=82.17 E-value=2.7 Score=34.89 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=52.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g-r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
++++.|.+++ .+.|+.+..-||.=++.+++.+|.- +..++ +.-..++.++.++|++||.+|+.++..+.
T Consensus 215 ~~l~~l~~~~-~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 215 SFIENLFALA-GDEEPEVRKNVCRALVMLLEVRMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLA 284 (852)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 6788888887 4567888888999999999998731 11122 23455677889999999999998877765
No 68
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=81.41 E-value=0.91 Score=37.75 Aligned_cols=72 Identities=14% Similarity=0.245 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccch--hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG--RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g--r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
-+++..|+..| .+.++.+-..||.=||.|....+.. ...+. +.=..+++.|.+++++||..|..|+..+...
T Consensus 399 ~~~l~~l~~~l-~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~--~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 399 PELIPHLIQCL-SDKKALVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHHHHT-TCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 46778888888 4457788888999999988876431 11121 1234566677889999999999999988743
No 69
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=78.43 E-value=3.6 Score=33.96 Aligned_cols=71 Identities=18% Similarity=0.382 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHHhc---cCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhh--cCCCHHhHHHHHHHHHHHh
Q 034106 18 NDFQILRVLLTILD---TSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM--NHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 18 ~~~~llk~L~~lL~---~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm--~h~d~eVr~eAL~avQklm 92 (103)
.+-+++-..++.+. .+.||.+.+.|+.=+|.+. ...+++.+- .-|.+++ .|++|-||+.|..|+-++.
T Consensus 104 ~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-----~~e~~~~l~--~~v~~~l~~~d~~~~VRK~A~~al~kl~ 176 (621)
T 2vgl_A 104 SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-----SREMAEAFA--GEIPKILVAGDTMDSVKQSAALCLLRLY 176 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-----CHHHHHHHT--THHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-----CHHHHHHHH--HHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 34454444444432 2567888888888888773 244666654 6678888 8999999999999999988
Q ss_pred cch
Q 034106 93 LGA 95 (103)
Q Consensus 93 ~~~ 95 (103)
-..
T Consensus 177 ~~~ 179 (621)
T 2vgl_A 177 RTS 179 (621)
T ss_dssp HHC
T ss_pred HhC
Confidence 643
No 70
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=78.16 E-value=3.8 Score=33.20 Aligned_cols=71 Identities=10% Similarity=0.058 Sum_probs=46.4
Q ss_pred HHHHHHHHHhccCC-CcceeehhcchhHHHHHHccchhHHHHhh--ChHHHHHhhhcCC--CHHhHHHHHHHHHHHhc
Q 034106 21 QILRVLLTILDTSS-DPRALAVACFDLSQFIQYHPAGRVIVTDL--KAKERVMKLMNHE--NTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~-d~~~laVAc~Digefvr~~p~gr~i~~~l--g~K~~vM~Lm~h~--d~eVr~eAL~avQklm~ 93 (103)
+++..|.+.+..++ |+.+...|+.-++.+++.++ + ..+... ..-..++..+.++ +++||..|+.|+..++.
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~-~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-P-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-H-HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-H-hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 46777777774332 66666667777788877763 1 112221 1223466677776 79999999999998763
No 71
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=77.12 E-value=1.8 Score=37.47 Aligned_cols=72 Identities=11% Similarity=0.110 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhh-ChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL-KAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+++..|.+.++++.++.+..-|+.=++++++..|.. +...+ ..-..++.++.++++.||..|+.|+..+...
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~--l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL--LVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS--CTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 677888888854566777777777788888766431 11100 1335677788999999999999999988754
No 72
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=76.87 E-value=0.7 Score=30.71 Aligned_cols=43 Identities=21% Similarity=0.452 Sum_probs=31.9
Q ss_pred CCcceeehh--cchhHHHHHHccchhHHHHhhChH--HHHHhhhcCC
Q 034106 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 76 (103)
Q Consensus 34 ~d~~~laVA--c~Digefvr~~p~gr~i~~~lg~K--~~vM~Lm~h~ 76 (103)
.++.+++|- .+|+..|+..||.|..++....|| +..|.-..|+
T Consensus 22 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs 68 (104)
T 1hko_A 22 SKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68 (104)
T ss_dssp SSSBEEEETTEEEEHHHHSSSSSSCSHHHHTTCSEECHHHHTTTTCC
T ss_pred CCCEEEEECCEEEECCcchhhCcChHHHHHHhcCccchHHHHHcCCC
Confidence 445555654 789999999999999999888777 4555544565
No 73
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=76.63 E-value=0.63 Score=30.12 Aligned_cols=43 Identities=21% Similarity=0.452 Sum_probs=31.7
Q ss_pred CCcceeehh--cchhHHHHHHccchhHHHHhhChH--HHHHhhhcCC
Q 034106 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 76 (103)
Q Consensus 34 ~d~~~laVA--c~Digefvr~~p~gr~i~~~lg~K--~~vM~Lm~h~ 76 (103)
.++.+++|- .+|+..|+..||.|..++....|| +..|.-..|+
T Consensus 18 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs 64 (93)
T 1cyo_A 18 SKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64 (93)
T ss_dssp TTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCC
T ss_pred CCCEEEEECCEEEECCCcchhCcChHHHHHHhcCccchHHHHHcCCC
Confidence 344555553 789999999999999998888777 4555544565
No 74
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=76.23 E-value=4.1 Score=35.23 Aligned_cols=68 Identities=9% Similarity=0.181 Sum_probs=53.3
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
+++..|.+.|. +.++.+-..|+.=|+.+++..|. ..+.. ....++..+.++++.||.-|..++..++.
T Consensus 48 ~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--~~~~~--i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~ 115 (1230)
T 1u6g_C 48 KVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--YQVET--IVDTLCTNMLSDKEQLRDISSIGLKTVIG 115 (1230)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--HHHHH--HHHHHHHHTTCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--HHHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 78888999985 56777666677778999887765 33333 56778888899999999999999998874
No 75
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=76.10 E-value=0.4 Score=30.92 Aligned_cols=42 Identities=14% Similarity=0.414 Sum_probs=29.1
Q ss_pred CCcceeeh--hcchhHHHHHHccchhHHHHhhChH--HHHHhhhcC
Q 034106 34 SDPRALAV--ACFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNH 75 (103)
Q Consensus 34 ~d~~~laV--Ac~Digefvr~~p~gr~i~~~lg~K--~~vM~Lm~h 75 (103)
.++.+++| -.+|+..|+..||.|..++....|| +..++-..|
T Consensus 19 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~h~ 64 (88)
T 3lf5_A 19 KDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHR 64 (88)
T ss_dssp TTEEEEEETTEEEECGGGTTTCTTCHHHHHTTTTEECHHHHHHHHT
T ss_pred CCCEEEEECCEEEECccchhhCcChhhhhhhcCCCcchHHHHHHCC
Confidence 34455554 3689999999999999988887665 344444433
No 76
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=75.78 E-value=0.78 Score=29.72 Aligned_cols=44 Identities=16% Similarity=0.387 Sum_probs=31.4
Q ss_pred CCcceeeh--hcchhHHHHHHccchhHHHHhhChH--HHHHhhhcCCC
Q 034106 34 SDPRALAV--ACFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHEN 77 (103)
Q Consensus 34 ~d~~~laV--Ac~Digefvr~~p~gr~i~~~lg~K--~~vM~Lm~h~d 77 (103)
.++.+++| -.+|+..|+..||.|..++....|| +..+.-..|+.
T Consensus 23 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~ 70 (92)
T 3ner_A 23 LKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSS 70 (92)
T ss_dssp TTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCH
T ss_pred CCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCH
Confidence 34445544 3689999999999999999888776 45555445653
No 77
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=74.92 E-value=5.3 Score=32.39 Aligned_cols=70 Identities=11% Similarity=0.202 Sum_probs=49.6
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccch---hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG---RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g---r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+++..|+..|. +.++.+-.-||.=||.|++..|.. ...+.. .=..++..|.++ +.||..|+.|++.+...
T Consensus 408 ~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~--~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAINDVYLAP--LLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHH--HHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHH--HHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 46777777773 456777788899999999987642 122222 223566677764 99999999999998854
No 78
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=73.66 E-value=9.8 Score=32.78 Aligned_cols=84 Identities=15% Similarity=0.186 Sum_probs=60.8
Q ss_pred HhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccc--hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHH
Q 034106 10 DNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA--GRVIVTDLKAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 10 ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~--gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
.+++.|..+ .+-+..|+++|+ ++|--+.-=+..=|..++...|. =+.|+..-+|-.++|.++.++.+-||-||+..
T Consensus 112 ~~~d~f~~~-~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallL 189 (651)
T 3grl_A 112 QFTEIFIKQ-QENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLL 189 (651)
T ss_dssp HHHHHHHHS-THHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHcC-CccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHH
Confidence 355666443 578889999994 55644433344445666667765 33455566889999999999999999999999
Q ss_pred HHHHhcch
Q 034106 88 IQRLFLGA 95 (103)
Q Consensus 88 vQklm~~~ 95 (103)
+..+.-++
T Consensus 190 L~~Lt~~n 197 (651)
T 3grl_A 190 LQALTRSN 197 (651)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 98888776
No 79
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=73.51 E-value=0.58 Score=31.67 Aligned_cols=42 Identities=7% Similarity=0.119 Sum_probs=30.1
Q ss_pred Ccceeehh--cchhHHHHHHccchhHHHHhhChHH--HHHhhhcCC
Q 034106 35 DPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAKE--RVMKLMNHE 76 (103)
Q Consensus 35 d~~~laVA--c~Digefvr~~p~gr~i~~~lg~K~--~vM~Lm~h~ 76 (103)
++.+++|- .+|+..|+..+|.|..++....||+ ..|.-..|+
T Consensus 38 ~d~wvvi~G~VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs 83 (112)
T 2keo_A 38 GGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQF 83 (112)
T ss_dssp TCCEEEETTEEEEHHHHHHHHTSTTSTTGGGTTSCHHHHHHHHHHS
T ss_pred CCEEEEECCEEEECCcchhhCCCchhhhhhhCCccchHHHhHcCCC
Confidence 34555554 7899999999999999888877763 444433354
No 80
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.99 E-value=11 Score=27.11 Aligned_cols=70 Identities=13% Similarity=0.195 Sum_probs=47.5
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhh----cCCCHHhHHHHHHHHHHHhc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM----NHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm----~h~d~eVr~eAL~avQklm~ 93 (103)
+.+|.|.+=| .+.||.+.--|+.=|-..|++. |..+-.+++-+..+-+|. ...+++||..+|.-+|.|..
T Consensus 42 ~a~r~l~krl-~~~n~~~~l~aL~Lle~~vkNc--G~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 42 NAFAAIKKKM-NSPNPHSSCYSLLVLESIVKNC--GAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS--HHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4445555555 3456666666777778888887 777766666555433322 35689999999999998873
No 81
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=72.63 E-value=3.1 Score=36.49 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=58.8
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccc-hhHHHHhhChHHHHHhhhcC--CCHHhHHHHHHHHHHHhc
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-GRVIVTDLKAKERVMKLMNH--ENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~-gr~i~~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm~ 93 (103)
=++.|+.++ .++|..+...|+-=|+.+.-.+|. -+.+++.-++-..+.+++.. +|++++..|+.++.-|+-
T Consensus 655 rL~lLV~Ll-~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 655 NFNILVKLL-QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 488999999 567777777788777777767774 57777777888999999987 999999999999999984
No 82
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=72.15 E-value=0.34 Score=31.16 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=28.7
Q ss_pred CCcceeehh--cchhHHHHHHccchhHHHHhhChH--HHHHh
Q 034106 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMK 71 (103)
Q Consensus 34 ~d~~~laVA--c~Digefvr~~p~gr~i~~~lg~K--~~vM~ 71 (103)
.++.+++|- .+|+..|+..||.|..++....|| +..+.
T Consensus 21 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~ 62 (90)
T 1cxy_A 21 PDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWE 62 (90)
T ss_dssp TTEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHH
T ss_pred CCCEEEEECCEEEECccchhhCcChHHHHHHHCCcchhHHHh
Confidence 344555554 789999999999999988888776 44554
No 83
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=71.44 E-value=0.59 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=24.3
Q ss_pred CCcceeehh--cchhHHHHHHccchhHHHHhhChH
Q 034106 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK 66 (103)
Q Consensus 34 ~d~~~laVA--c~Digefvr~~p~gr~i~~~lg~K 66 (103)
.+..+++|- .+|+..|+..||.| .++....||
T Consensus 17 ~~~~wv~i~g~VYDvT~f~~~HPGG-~~i~~~aG~ 50 (82)
T 1x3x_A 17 QNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQ 50 (82)
T ss_dssp TTEEEEEETTEEEECGGGGGGCTTG-GGGGGGTTS
T ss_pred CCCEEEEECCEEEECCcchhhCcCh-hhhhhhCCC
Confidence 344555554 78999999999999 887777666
No 84
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=70.96 E-value=16 Score=25.16 Aligned_cols=69 Identities=10% Similarity=0.057 Sum_probs=47.5
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhh---c------CCCHHhHHHHHHHHHHH
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM---N------HENTEVTKSALLCIQRL 91 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm---~------h~d~eVr~eAL~avQkl 91 (103)
+.+|.|.+-| .+.+|.+.--|+.=+-.+|++. |...-.+.+-+..+=+|. . ..+++||..+|..+|.|
T Consensus 38 ~a~rai~krl-~~~n~~vql~AL~LLe~~vkNC--G~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 38 HAPWLLAHKI-QSPQEKEALYALTVLEMCMNHC--GEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSW 114 (148)
T ss_dssp HHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHc--CHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHH
Confidence 4455555555 3567766666666677888888 777777776665543333 2 24899999999999987
Q ss_pred h
Q 034106 92 F 92 (103)
Q Consensus 92 m 92 (103)
=
T Consensus 115 ~ 115 (148)
T 1mhq_A 115 T 115 (148)
T ss_dssp H
T ss_pred H
Confidence 4
No 85
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=67.28 E-value=0.97 Score=28.47 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=22.7
Q ss_pred Ccceeehh--cchhHHHHHHccchhHHHHhhChHH
Q 034106 35 DPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAKE 67 (103)
Q Consensus 35 d~~~laVA--c~Digefvr~~p~gr~i~~~lg~K~ 67 (103)
|+.+++|- .+|+..|+..||.|..++-...||+
T Consensus 20 ~~~wv~i~g~VYDvt~f~~~HPGG~~~il~~aG~D 54 (82)
T 1mj4_A 20 TGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGP 54 (82)
T ss_dssp TEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSB
T ss_pred CCeEEEECCEEEEchHHHHhCCCHhHHHHHHcCCC
Confidence 34555554 7899999999999955444444443
No 86
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.65 E-value=21 Score=24.86 Aligned_cols=59 Identities=8% Similarity=0.078 Sum_probs=37.0
Q ss_pred CCCcceeehhcchhHHHHHHccchhHHHHhhChHHHH---Hhhhc-CCCHHhHHHHHHHHHHHhc
Q 034106 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERV---MKLMN-HENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 33 s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~v---M~Lm~-h~d~eVr~eAL~avQklm~ 93 (103)
+.+|.+.--|+.=|-.+|++. |...-.++.-|..+ ..++. ..+++||..+|..+|.|=.
T Consensus 63 ~~n~~vql~AL~LLd~~vkNc--G~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 63 HKVPHVALQALTLLGACVANC--GKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT--CHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHh--hHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 345544444555566777777 66666555544333 22333 3689999999999998863
No 87
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=65.92 E-value=21 Score=25.16 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=42.4
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHh---hhc------CCCHHhHHHHHHHHHHHh
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK---LMN------HENTEVTKSALLCIQRLF 92 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~---Lm~------h~d~eVr~eAL~avQklm 92 (103)
.+|.|.+-| .+.+|.+.--|+.=|-.+|++. |...-.+++-+..+=+ +.. ..+++||..+|..+|.|=
T Consensus 51 A~ral~krl-~~~n~~vql~AL~LLd~~vkNC--G~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 51 AVRLLAHKI-QSPQEWEALQALTVLEACMKNC--GRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS--HHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHc--CHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 344444444 2445555445555566778887 7777766665543333 333 247999999999999875
No 88
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=65.74 E-value=21 Score=24.72 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=43.7
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHh---hhc------CCCHHhHHHHHHHHHHHh
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK---LMN------HENTEVTKSALLCIQRLF 92 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~---Lm~------h~d~eVr~eAL~avQklm 92 (103)
.+|.|.+-|. +.+|.+.--|+.=+-..|++. |...-.+++-++.+=+ ++. ..+++||...|..+|.|=
T Consensus 49 a~ral~krl~-~~n~~v~l~AL~LLe~cvkNC--G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 49 ATRLLAHKIQ-SPQEWEAIQALTVLETCMKSC--GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHC--CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhc--CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 3444444442 455555555555666778888 7777666665554433 333 468999999999999874
No 89
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=65.21 E-value=25 Score=28.21 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHhccCCCccee--ehh-cchhH----HHHHHccch----hHHHHhh-ChHHHHHhhhcCCCHHhHHHHHH
Q 034106 19 DFQILRVLLTILDTSSDPRAL--AVA-CFDLS----QFIQYHPAG----RVIVTDL-KAKERVMKLMNHENTEVTKSALL 86 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~l--aVA-c~Dig----efvr~~p~g----r~i~~~l-g~K~~vM~Lm~h~d~eVr~eAL~ 86 (103)
--+++-.|..+|. ++|+.++ +|. +--|. +++-..|.. ...++.+ ..|..|..+..++|.-||-.|++
T Consensus 98 ~~~~l~~L~~LL~-d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiK 176 (386)
T 3o2t_A 98 LLKLIANLNMLLR-DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIK 176 (386)
T ss_dssp HHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 3455556666663 4555332 111 11111 344444542 4666666 69999999999999999999999
Q ss_pred HHHHHhc
Q 034106 87 CIQRLFL 93 (103)
Q Consensus 87 avQklm~ 93 (103)
-+|.++.
T Consensus 177 Fle~VIl 183 (386)
T 3o2t_A 177 FVEGLIV 183 (386)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999884
No 90
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=64.80 E-value=27 Score=24.05 Aligned_cols=58 Identities=16% Similarity=0.053 Sum_probs=36.1
Q ss_pred CCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHh----hhc---CCCHHhHHHHHHHHHHHhc
Q 034106 34 SDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK----LMN---HENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 34 ~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~----Lm~---h~d~eVr~eAL~avQklm~ 93 (103)
.+|.+.--|+.=+-.+|++. |...-.+.+-+..+=+ ++. .++++||..+|..+|.|=.
T Consensus 66 ~n~~v~l~AL~LLd~~vkNc--G~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 66 KNFHEVMLALTVLETCVKNC--GHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHS--CHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh--CHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 44444444445556667776 6777666665544333 222 2456999999999998754
No 91
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=63.63 E-value=19 Score=29.02 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=50.7
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g-r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.++..|.+.+ .+.|+.+-..||.=++.++..+|.. ...+.+ ..=..++..+.+++++||.+|+..+..+...
T Consensus 224 ~ll~~l~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 296 (861)
T 2bpt_A 224 YLMQVVCEAT-QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp HHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 3677777777 4567777778888899999988742 111110 1223456677899999999999998877654
No 92
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=61.67 E-value=7.4 Score=29.38 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=32.5
Q ss_pred hHHHHhh-ChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034106 57 RVIVTDL-KAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 57 r~i~~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
...++.+ ..|.+|..+..+++.-||-.|++-+|.++.
T Consensus 136 ~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 136 EQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 4566665 689999999999999999999999999874
No 93
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=60.65 E-value=23 Score=24.00 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=38.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHH---HhhhcCCCHHhHHHHHHHHHHHh
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERV---MKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~v---M~Lm~h~d~eVr~eAL~avQklm 92 (103)
+.+|.|.+-| .+.+|.+.--|+.=+-.+|++. |...-.+.+-+..+ -.++...+++||...|..+|.|=
T Consensus 42 ~a~rai~Krl-~~~n~~~ql~AL~LLe~~vkNc--G~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRV-NHKDPHVAMQALTLLGACVSNC--GKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhc--CHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3344444444 2344444333444455667776 55544444333322 23345578999999999999874
No 94
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=60.00 E-value=5.3 Score=24.63 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=18.1
Q ss_pred hHHHHHHccchhHHHHhhC
Q 034106 46 LSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 46 igefvr~~p~gr~i~~~lg 64 (103)
||++|+.||+...|+.++|
T Consensus 11 I~eiv~~~P~~~~vf~~~G 29 (73)
T 2k5e_A 11 FAQALQTHPGVAGVLRSYN 29 (73)
T ss_dssp HHHHHHHCTHHHHHHHHTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 8999999999999999987
No 95
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=58.37 E-value=5.4 Score=24.82 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=18.0
Q ss_pred hHHHHHHccchhHHHHhhC
Q 034106 46 LSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 46 igefvr~~p~gr~i~~~lg 64 (103)
||++++.||+-+.++.++|
T Consensus 15 I~elv~~~P~~~~vl~~~G 33 (81)
T 2fi0_A 15 VAEVVDKHPEVLEILVELG 33 (81)
T ss_dssp HHHHHHHCGGGHHHHTTTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 7899999999999999988
No 96
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=56.76 E-value=14 Score=25.66 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=40.2
Q ss_pred cCCCc-ceeehhcchhHHHHHHccch--hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 32 TSSDP-RALAVACFDLSQFIQYHPAG--RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 32 ~s~d~-~~laVAc~Digefvr~~p~g--r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+|+|| .+=.=...+|++....+|.. ..|+ +.+++=++++++.|+|.||+.+.-|+.+-
T Consensus 20 Ts~d~~~~pgylm~EIA~~T~~s~~~~~~eim------~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 20 TSDEDKVAPVYKLEEICDLLRSSHVSIVKEFS------EFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp TCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHH------HHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred hcCCCCCCcHHHHHHHHHHHHhcchhHHHHHH------HHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 45444 33344567888888777632 3333 44566678899999999999999998654
No 97
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=56.08 E-value=19 Score=30.99 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=57.6
Q ss_pred HHHHHHHHHhccCC-CcceeehhcchhHHHHHHccchhHHHHhhC---------hHHHHHhhhc-CCCHHhHHHHHHHHH
Q 034106 21 QILRVLLTILDTSS-DPRALAVACFDLSQFIQYHPAGRVIVTDLK---------AKERVMKLMN-HENTEVTKSALLCIQ 89 (103)
Q Consensus 21 ~llk~L~~lL~~s~-d~~~laVAc~Digefvr~~p~gr~i~~~lg---------~K~~vM~Lm~-h~d~eVr~eAL~avQ 89 (103)
.++..|++++-.+. ...+++.|+.=+|+.+|-.|.....+.+.. .-..+|.+++ +...++|..|..|++
T Consensus 311 g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ 390 (651)
T 3grl_A 311 GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390 (651)
T ss_dssp THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 36888999985442 446778899999999999999888887654 1122444454 567999999999999
Q ss_pred HHhcchh
Q 034106 90 RLFLGAK 96 (103)
Q Consensus 90 klm~~~~ 96 (103)
-.+.+|+
T Consensus 391 ay~~~N~ 397 (651)
T 3grl_A 391 CFLYKNQ 397 (651)
T ss_dssp HHHTTCH
T ss_pred HHHhCCH
Confidence 9998874
No 98
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=53.32 E-value=32 Score=23.93 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=30.8
Q ss_pred hhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 45 DLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 45 Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+|...|+.-|.|-+-+- ..|+.-|.|.||.|.+.||.-+-.+|-|
T Consensus 38 eicD~I~~~~~~~keA~-----ral~krl~~~n~~vql~AL~LLd~~vkN 82 (163)
T 1x5b_A 38 DICDKVGSTPNGAKDCL-----KAIMKRVNHKVPHVALQALTLLGACVAN 82 (163)
T ss_dssp HHHHHHHHSSSHHHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHH-----HHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 56677777664422221 1244446899999999999988888865
No 99
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A
Probab=52.24 E-value=2.7 Score=30.98 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=27.2
Q ss_pred HHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHH
Q 034106 50 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 50 vr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
.|.|.-|-+|+.+||++. |+||++ || -|+.||..
T Consensus 127 ~R~ygigAqIL~dLGV~~--irLLTn-np-~K~~~L~g 160 (196)
T 2bz1_A 127 ERDFTLCADMFKLLGVNE--VRLLTN-NP-KKVEILTE 160 (196)
T ss_dssp CCCTHHHHHHHHHTTCCS--EEEECS-CH-HHHHHHHH
T ss_pred cccHHHHHHHHHHcCCCc--EEccCC-CC-cccccccc
Confidence 377888999999999876 789986 45 38888865
No 100
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=51.51 E-value=19 Score=30.26 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=45.5
Q ss_pred CCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 34 SDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 34 ~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.++...-.|+.=|..|.+++|.=..- |=...+.|...+|..||.+|++.+=.+-..
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh
Confidence 46788889999999999999974332 456788999999999999999987666543
No 101
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=51.50 E-value=33 Score=24.09 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=31.2
Q ss_pred hhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 45 DLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 45 Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+|...|+.-|.|-+-+- ..|..-++|+|+.|.+.||.-+-.+|-|
T Consensus 36 eicD~I~~~~~~~k~A~-----ral~krl~~~n~~vql~AL~LLd~~vkN 80 (171)
T 1juq_A 36 GFCDQINKELEGPQIAV-----RLLAHKIQSPQEWEALQALTVLEACMKN 80 (171)
T ss_dssp HHHHHHHHSTTHHHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHH-----HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 66667777665432221 2344556899999999999988888865
No 102
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=49.84 E-value=12 Score=23.27 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=17.9
Q ss_pred hHHHHHHccchhHHHHhhC
Q 034106 46 LSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 46 igefvr~~p~gr~i~~~lg 64 (103)
||++++.||+-..++.++|
T Consensus 9 I~eIv~~~P~~~~vf~~~G 27 (76)
T 2k53_A 9 IADVLQMDRGTAPIFINNG 27 (76)
T ss_dssp HHHHHHHCGGGHHHHHHTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 7999999999999999987
No 103
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=48.61 E-value=58 Score=25.84 Aligned_cols=76 Identities=12% Similarity=0.158 Sum_probs=54.7
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHh-hC---------hHHHHHhhhc---CCCHHhHHHHH
Q 034106 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTD-LK---------AKERVMKLMN---HENTEVTKSAL 85 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~-lg---------~K~~vM~Lm~---h~d~eVr~eAL 85 (103)
..+.+++|..++. |.++.++--|+-=|--||.+-|.+-.++.+ .. -=..+|.+++ ..|++++-.|+
T Consensus 200 ~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 5678999999996 667665444444477788887766666533 11 1247888887 78999999999
Q ss_pred HHHHHHhcch
Q 034106 86 LCIQRLFLGA 95 (103)
Q Consensus 86 ~avQklm~~~ 95 (103)
.=+.+++..-
T Consensus 279 tLIN~lL~~a 288 (339)
T 3dad_A 279 TLINKTLAAL 288 (339)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9888888653
No 104
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=47.07 E-value=9.3 Score=31.92 Aligned_cols=71 Identities=10% Similarity=-0.010 Sum_probs=36.4
Q ss_pred CChhHHHHhHHh-hhhccHHHHHHHHHHhcc---CC-Ccc--eeehhcchhHHHHHHccchhHHHHhh----ChHHHHHh
Q 034106 3 KDPLFWHDNITN-FEENDFQILRVLLTILDT---SS-DPR--ALAVACFDLSQFIQYHPAGRVIVTDL----KAKERVMK 71 (103)
Q Consensus 3 ~se~FW~ENa~k-f~e~~~~llk~L~~lL~~---s~-d~~--~laVAc~Digefvr~~p~gr~i~~~l----g~K~~vM~ 71 (103)
.++.||.||-.. |.+=.-.+-+.+-++-++ .. +.. --.--..||..||+.+|+=+.--+.+ +.=+.+|+
T Consensus 277 ~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~ 356 (650)
T 2xhe_A 277 EDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINM 356 (650)
T ss_dssp TTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899998776 443332222222222111 11 100 01224679999999999865433333 44444444
Q ss_pred hh
Q 034106 72 LM 73 (103)
Q Consensus 72 Lm 73 (103)
.+
T Consensus 357 ~i 358 (650)
T 2xhe_A 357 AF 358 (650)
T ss_dssp HS
T ss_pred HH
Confidence 43
No 105
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=46.56 E-value=25 Score=27.92 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=27.9
Q ss_pred ChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 64 KAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 64 g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+|=..++....+.+.+..-.||.|++.+|.+
T Consensus 160 ~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~ 190 (339)
T 3dad_A 160 EGLSCLIRVGAAADHNYQSYILRALGQLMLF 190 (339)
T ss_dssp THHHHHHHHHTTSCHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Confidence 5677788888889999999999999999987
No 106
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=46.54 E-value=7.7 Score=31.89 Aligned_cols=43 Identities=21% Similarity=0.470 Sum_probs=30.5
Q ss_pred CCcceeehh--cchhHHHHHHccchhHHHHhhChH--HHHHhhhcCCC
Q 034106 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHEN 77 (103)
Q Consensus 34 ~d~~~laVA--c~Digefvr~~p~gr~i~~~lg~K--~~vM~Lm~h~d 77 (103)
.++.+++|- .+|+..|+..||.|..++....|| +..+.-. |+.
T Consensus 22 ~~~~wv~i~g~VYDvt~f~~~HPGG~~~i~~~aG~DaT~~f~~~-H~~ 68 (511)
T 1kbi_A 22 PDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAP 68 (511)
T ss_dssp TTEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGG-SCT
T ss_pred CCCEEEEECCEEEECCcchhhCcChHHHHHHHcCcchhhhhhhc-CCH
Confidence 444555553 789999999999999999877666 3445444 553
No 107
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.40 E-value=55 Score=23.71 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=41.6
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHH---Hhhh-cCCCHHhHHHHHHHHHHHh
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERV---MKLM-NHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~v---M~Lm-~h~d~eVr~eAL~avQklm 92 (103)
+.+|.|.+=|. +.+|.+.--|+.=|-..|++. |..+-.++.-++.+ -.|+ ...+++||..+|.-+|.|=
T Consensus 45 ~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNc--G~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 45 YAVNSIKKKVN-DKNPHVALYALEVMESVVKNC--GQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHH--CHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhc--chHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 44445555442 455555444555566777777 66555555544422 2233 3568999999999999874
No 108
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=45.26 E-value=11 Score=31.06 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=30.1
Q ss_pred CChhHHHHhHHh-hhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHH
Q 034106 3 KDPLFWHDNITN-FEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV 60 (103)
Q Consensus 3 ~se~FW~ENa~k-f~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~ 60 (103)
.++.||.+|-.. |.+=.-.+-+.+-++-++..-...-.-...|+.+||+.+|+=+..-
T Consensus 295 ~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~s~~dlk~~v~~lP~~~~~~ 353 (606)
T 3c98_A 295 EDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKEL 353 (606)
T ss_dssp TTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC-------CCSCCCTTTTCGGGHHHH
T ss_pred CCchhHHHHhccCHHHHHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHhHHHHHHH
Confidence 367899998765 4443323333333332211111111224579999999999855443
No 109
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=42.54 E-value=56 Score=22.34 Aligned_cols=44 Identities=9% Similarity=0.074 Sum_probs=29.4
Q ss_pred hhHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 45 DLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 45 Digefvr~~p~g-r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+|...|+.-|.| |..+.. |..-++|+||.|...||.-+-.+|-|
T Consensus 24 eicD~I~~~~~~~k~a~ra------i~krl~~~n~~vql~AL~LLe~~vkN 68 (148)
T 1mhq_A 24 NFCEQVNTDPNGPTHAPWL------LAHKIQSPQEKEALYALTVLEMCMNH 68 (148)
T ss_dssp HHHHHHHHSSHHHHHHHHH------HHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHH------HHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 666666666643 333222 22234799999999999988888865
No 110
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=42.27 E-value=75 Score=21.94 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=45.5
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHh----hhcC---CCHHhHHHHHHHHHHHhc
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK----LMNH---ENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~----Lm~h---~d~eVr~eAL~avQklm~ 93 (103)
+.+|.|.+=|..+.++.+.--|+.=|-..|+.. |..+-.+.+-|+.+=+ +++. .+.+||...|..+|.|=.
T Consensus 53 eA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNC--G~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~ 130 (152)
T 3rru_A 53 DAVKALKKRISKNYNHKEIQLTLSLIDMCVQNC--GPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQ 130 (152)
T ss_dssp HHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHS--CHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhc--CHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHH
Confidence 444455554532345544334556677788888 8888888877766544 2332 245899999999998753
No 111
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=42.06 E-value=28 Score=25.32 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.4
Q ss_pred hcCCCHHhHHHHHHHHHHHhcc
Q 034106 73 MNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 73 m~h~d~eVr~eAL~avQklm~~ 94 (103)
++|+||.|...||.-+-.+|-|
T Consensus 54 l~~~n~~v~l~aL~LLe~~vkN 75 (226)
T 3zyq_A 54 VNDKNPHVALYALEVMESVVKN 75 (226)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 4699999999999988777754
No 112
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=41.81 E-value=10 Score=31.04 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=30.3
Q ss_pred CChhHHHHhHHh-hhhccHHHHHHHHHHhccCCCcc-eeehhcchhHHHHHHccchhHHH
Q 034106 3 KDPLFWHDNITN-FEENDFQILRVLLTILDTSSDPR-ALAVACFDLSQFIQYHPAGRVIV 60 (103)
Q Consensus 3 ~se~FW~ENa~k-f~e~~~~llk~L~~lL~~s~d~~-~laVAc~Digefvr~~p~gr~i~ 60 (103)
.++.||.||-.. |.+=.-.+-+.+-++-++..... .-.--..||..||+.+|+=+.--
T Consensus 280 ~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~s~~~lk~~v~~lP~~~~~~ 339 (591)
T 1epu_A 280 EKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKEL 339 (591)
T ss_dssp GGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC--------CCCCCHHHHHTHHHHHHHH
T ss_pred CCChHHHHHhccCHHHHHHHHHHHHHHHHHhccccccccccCHHHHHHHHHHhHHHHHHH
Confidence 358899998765 44333333333333322111100 01123579999999999755443
No 113
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=37.50 E-value=89 Score=22.17 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=23.1
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 67 ERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+.++..+.|.+|.|+-+++..+..++..
T Consensus 142 e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 142 ELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 3455667899999999999999998743
No 114
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=37.48 E-value=46 Score=28.18 Aligned_cols=55 Identities=9% Similarity=0.049 Sum_probs=41.9
Q ss_pred CcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034106 35 DPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 35 d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
.|.+.+.||.=||.|....| ...+.. .=..++..|.++++.|+-.|-.|++.+.-
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~--~~~l~~--~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLT--KAQLIE--LMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSC--HHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CceehHHHHHHHHHHHhhCC--HHHHHH--HHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 77888889999999888764 223332 22456677788899999999999999875
No 115
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=35.96 E-value=22 Score=30.62 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=35.7
Q ss_pred hhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 41 VACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 41 VAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.+|.=+|.|.+....-...+.. +=..+++.|.++++.|+..|-.|++++.-.
T Consensus 519 ~~~~~lgry~~~~~~~~~~l~~--vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKAHWNFLRT--VILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHH--HHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5777778666554322223332 234567778899999999999999998854
No 116
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=35.85 E-value=29 Score=27.24 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=22.3
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 67 ERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.-|-+.+.|++|-||.-|+.|+-+++-..
T Consensus 142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~ 170 (355)
T 3tjz_B 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCS 170 (355)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhccC
Confidence 34556778889999999999988887554
No 117
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=33.35 E-value=89 Score=21.42 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=18.2
Q ss_pred hcCCCHHhHHHHHHHHHHHhcc
Q 034106 73 MNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 73 m~h~d~eVr~eAL~avQklm~~ 94 (103)
++|+||.|...||.-+-.+|-|
T Consensus 57 l~~~n~~v~l~AL~LLe~cvkN 78 (149)
T 3g2s_A 57 IQSPQEWEAIQALTVLETCMKS 78 (149)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 4699999999999987777644
No 118
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=32.94 E-value=72 Score=22.74 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=19.8
Q ss_pred hhcCCCHHhHHHHHHHHHHHhcch
Q 034106 72 LMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 72 Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
-|+|+||.|.+.||.-+-.+|.|-
T Consensus 50 rl~~~n~~~~l~aL~Lle~~vkNc 73 (220)
T 1dvp_A 50 KMNSPNPHSSCYSLLVLESIVKNC 73 (220)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHcCCCHHHHHHHHHHHHHHHhcc
Confidence 357899999999998888887653
No 119
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=32.87 E-value=43 Score=25.95 Aligned_cols=28 Identities=7% Similarity=0.215 Sum_probs=23.8
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 67 ERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
..+.+|+..+|+.|+..||.++-+++-.
T Consensus 36 ~~L~~LL~dkD~~vk~raL~~LeellK~ 63 (265)
T 3b2a_A 36 FLILELAGEDDETTRLRAFVALGEILKR 63 (265)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 3456778889999999999999998865
No 120
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=32.66 E-value=7 Score=31.98 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=21.1
Q ss_pred hcchhHHHHHHccchhHHHHhhChHH
Q 034106 42 ACFDLSQFIQYHPAGRVIVTDLKAKE 67 (103)
Q Consensus 42 Ac~Digefvr~~p~gr~i~~~lg~K~ 67 (103)
-.+|+..|+..||.|..+|-...||+
T Consensus 29 ~VYDvT~fl~~HPGG~~~il~~aG~D 54 (466)
T 1sox_A 29 DVFDVTDFVELHPGGPDKILLAAGGA 54 (466)
T ss_dssp EEEECTTTTTTSTTCHHHHGGGTTSB
T ss_pred EEEechHhHhhCcCCcccchhhcCCc
Confidence 37899999999999977776665565
No 121
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto membrane, phosphoprotein, structural protein, acetylation, membrane; NMR {Mus musculus}
Probab=32.53 E-value=49 Score=23.62 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 33 s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+.||.-|.-++.||.+..... +..-......-+|++|+.+=..+||.|
T Consensus 68 ~~~p~eL~~la~~it~~y~~L-----------a~~~~~A~~t~~~~~i~~~Ik~~Vq~L 115 (165)
T 2kvp_A 68 NTSPEELGPLANQLTSDYGRL-----------ASQAKPAAVAAENEEIGAHIKHRVQEL 115 (165)
T ss_dssp HHCGGGHHHHHHHHHHHHHHH-----------HHHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 468999999999999874443 223333334455566665555555554
No 122
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=31.69 E-value=93 Score=20.84 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=18.4
Q ss_pred hcCCCHHhHHHHHHHHHHHhcc
Q 034106 73 MNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 73 m~h~d~eVr~eAL~avQklm~~ 94 (103)
++|.||.|.+.||.-+-.+|-|
T Consensus 51 l~~~n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 51 VNHKDPHVAMQALTLLGACVSN 72 (140)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHHHh
Confidence 5789999999999888777754
No 123
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=31.24 E-value=49 Score=24.61 Aligned_cols=70 Identities=20% Similarity=0.144 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcc---CCCc--ceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 20 FQILRVLLTILDT---SSDP--RALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 20 ~~llk~L~~lL~~---s~d~--~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
--+.|+|+-+=.+ -.|| .++|++|.+-.+++- +|+|+-.+.+ .|.-|-..|-++--|.|+.+..+.+-+
T Consensus 47 ~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG-~PE~~i~Laq-----aviyLA~aPKSNs~y~A~~~A~~~v~~ 120 (204)
T 2r9g_A 47 ASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLG-LPEARIPLAD-----VVVDLCLSPKSNSAYMALDAALADIRE 120 (204)
T ss_dssp HHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHC-TTTTHHHHHH-----HHHHHHHSCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHH-----HHHHHHcCCccHHHHHHHHHHHHHHHh
Confidence 3455666655322 1345 467888888888886 7999998843 566667777777778998888877754
Q ss_pred h
Q 034106 95 A 95 (103)
Q Consensus 95 ~ 95 (103)
.
T Consensus 121 ~ 121 (204)
T 2r9g_A 121 G 121 (204)
T ss_dssp T
T ss_pred c
Confidence 3
No 124
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=30.34 E-value=1e+02 Score=23.48 Aligned_cols=74 Identities=19% Similarity=0.297 Sum_probs=40.0
Q ss_pred cHHHHHHHHHHhcc---CCCcceeehhcchhHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034106 19 DFQILRVLLTILDT---SSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 19 ~~~llk~L~~lL~~---s~d~~~laVAc~Digefvr~~p~g-r~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+-++++..+.+|-. -.||.+--=..+-+++..|.+|+- ..|+ ..++.|++++|..=|--||--+..+=.+
T Consensus 101 ~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~------rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 101 KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIV------RDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHH------HHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHH------HHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 34444544444411 124444333445566666666642 2222 3456777788877777777777666555
Q ss_pred h-hhh
Q 034106 95 A-KYA 98 (103)
Q Consensus 95 ~-~~~ 98 (103)
. +|+
T Consensus 175 ~~~yv 179 (253)
T 2db0_A 175 SFKYV 179 (253)
T ss_dssp THHHH
T ss_pred Ccccc
Confidence 4 444
No 125
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=29.77 E-value=19 Score=21.58 Aligned_cols=33 Identities=24% Similarity=0.549 Sum_probs=20.8
Q ss_pred HHHhhhcC--CCHHhHHHHHHHHHHHhcchhhhhhh
Q 034106 68 RVMKLMNH--ENTEVTKSALLCIQRLFLGAKYASFL 101 (103)
Q Consensus 68 ~vM~Lm~h--~d~eVr~eAL~avQklm~~~~~~~~~ 101 (103)
|+.+||.+ ...+|--+-|.|+|+.+ +++|.+.+
T Consensus 11 RaiELle~lq~sgevp~~KL~aLq~VL-qSdF~~aV 45 (53)
T 1zl8_A 11 RILELMEHVQKTGEVNNAKLASLQQVL-QSEFFGAV 45 (53)
T ss_dssp HHHHHHHHHGGGSSSTHHHHHHHHHHH-SCSHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH-HHHHHHHH
Confidence 44455532 34567777788889988 55576554
No 126
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus musculus} SCOP: a.24.9.2
Probab=29.66 E-value=1.2e+02 Score=20.89 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=28.6
Q ss_pred CCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034106 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 33 s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+.||.-|.-++.||.+.-... +.+-......-+++||+.+=..+||.|
T Consensus 40 ~~~p~eL~~la~~lt~~Y~~L-----------a~~~~~A~~~~~~~~v~~~Ir~~Vq~L 87 (137)
T 2b0h_A 40 NTSPEELGPLANQLTSDYGRL-----------ASQAKPAAVAAENEEIGAHIKHRVQEL 87 (137)
T ss_dssp TTCSSTHHHHHHHHHHHHHHH-----------HHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 578999999999999873333 223333334445555555555555444
No 127
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1
Probab=29.16 E-value=18 Score=26.37 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=21.0
Q ss_pred HhHHhhhhccHHHHHHHHHHhccCCCcceeehhcch
Q 034106 10 DNITNFEENDFQILRVLLTILDTSSDPRALAVACFD 45 (103)
Q Consensus 10 ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~D 45 (103)
++..+|.++.+.--..+.+-|.....|.++.|+|.|
T Consensus 19 ~gN~~f~~~~~~~~~~~~~~La~gQ~P~~lvi~CsD 54 (221)
T 1ekj_A 19 TGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSD 54 (221)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECC
T ss_pred HHHHHHHhcCcccCHHHHHhhccCCCCcEEEEEeCC
Confidence 445555443332111222334567899999999998
No 128
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=28.71 E-value=60 Score=24.09 Aligned_cols=49 Identities=10% Similarity=0.026 Sum_probs=31.6
Q ss_pred hhHHHHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchh-HHHHHHc
Q 034106 5 PLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDL-SQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Di-gefvr~~ 53 (103)
..+.++|+.+|...=-++-+.+.+.|..-.......|.+||- |.|.+.|
T Consensus 131 a~~y~~N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~y 180 (282)
T 3mfq_A 131 AEMIQKNTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASY 180 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHC
Confidence 356778888887665566666666674322223345678884 7888888
No 129
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=27.01 E-value=24 Score=29.31 Aligned_cols=72 Identities=21% Similarity=0.204 Sum_probs=36.2
Q ss_pred CChhHHHHhHHh-hhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHH----HhhChHHHHHhhhc
Q 034106 3 KDPLFWHDNITN-FEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIV----TDLKAKERVMKLMN 74 (103)
Q Consensus 3 ~se~FW~ENa~k-f~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~----~~lg~K~~vM~Lm~ 74 (103)
.++.||.+|-.+ |.+=.-.+-+.+-++-+.......-.-...||..||+.+|+=+.-- .-++.=+.+|+.+.
T Consensus 283 ~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~ 359 (594)
T 1dn1_A 283 EDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ 359 (594)
T ss_dssp TTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC-------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899998876 4433323333333332211110011223579999999999744432 22345555555554
No 130
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A*
Probab=26.70 E-value=20 Score=27.81 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=25.5
Q ss_pred ceeehhcchhHH--------------HHHHccchhHHHHhhChHHHHHhhhcCC
Q 034106 37 RALAVACFDLSQ--------------FIQYHPAGRVIVTDLKAKERVMKLMNHE 76 (103)
Q Consensus 37 ~~laVAc~Dige--------------fvr~~p~gr~i~~~lg~K~~vM~Lm~h~ 76 (103)
..+|-+|||+|+ ++..|. ++.++|..++-....-|++++
T Consensus 108 ll~Aal~HD~~HpG~nN~fli~~~s~LA~lYn-d~SvLEnhH~a~~f~ll~~~~ 160 (338)
T 3ecm_A 108 ALIAATIHDVDHPGRTNSFLCNAGSELAILYN-DTAVLESHHAALAFQLTTGDD 160 (338)
T ss_dssp HHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTT-TSSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHhccCCCCccchHHHHhCCHHHHHcC-CCChhHHHHHHHHHHHHhcCc
Confidence 457788999983 344453 578888887766554444544
No 131
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=26.59 E-value=50 Score=25.01 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=32.9
Q ss_pred hhHHHHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcch-hHHHHHHc
Q 034106 5 PLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFD-LSQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~D-igefvr~~ 53 (103)
..+.++|+.+|.+.=-++-+.+.+.|..-.....-.|+.|| .|.|.+.|
T Consensus 165 a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~y 214 (313)
T 1toa_A 165 TREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAY 214 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHC
Confidence 46788888888776666667777777533311333466888 77888877
No 132
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=25.59 E-value=1.6e+02 Score=20.00 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=29.1
Q ss_pred hhHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHHHHhcc
Q 034106 45 DLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 45 Digefvr~~p~gr~i~~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~ 94 (103)
||...|+.-|.|=+-+-+ .|..-++ ++|+.|.+.||.-+-.+|-|
T Consensus 39 eicD~I~~~~~~~k~a~r-----al~krl~~~~n~~v~l~AL~LLd~~vkN 84 (157)
T 1elk_A 39 EICDIINETEEGPKDALR-----AVKKRIVGNKNFHEVMLALTVLETCVKN 84 (157)
T ss_dssp HHHHHHHHSSSHHHHHHH-----HHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHH-----HHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 666777776644322211 2333344 58999999999988887755
No 133
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=25.27 E-value=73 Score=23.65 Aligned_cols=47 Identities=11% Similarity=0.079 Sum_probs=33.0
Q ss_pred hhHHHHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcch-hHHHHHHc
Q 034106 5 PLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFD-LSQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~D-igefvr~~ 53 (103)
..+.++|+.+|...=-++-+.+.+.|..-.. . -.|+.|| .|.|.+.|
T Consensus 149 a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~-~-~~v~~H~af~Yf~~~y 196 (286)
T 3gi1_A 149 KDSYTKNAKAFKKEAEQLTEEYTQKFKKVRS-K-TFVTQHTAFSYLAKRF 196 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSC-C-EEEEEESCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C-EEEEECCchHHHHHHC
Confidence 4577888888877666677777777754332 3 3467888 77888888
No 134
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=24.92 E-value=19 Score=26.14 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=29.7
Q ss_pred ChhHHHHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcchhHHHHH
Q 034106 4 DPLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQ 51 (103)
Q Consensus 4 se~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~Digefvr 51 (103)
+..+|..+..-+.+.....+..+++.+.......+|-|+|-. |.+..
T Consensus 60 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~-G~~~~ 106 (318)
T 2fk8_A 60 SCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGW-GTTMR 106 (318)
T ss_dssp SCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTT-SHHHH
T ss_pred ceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccc-hHHHH
Confidence 344555444445555556777777777545566899999976 65543
No 135
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=24.54 E-value=25 Score=22.94 Aligned_cols=41 Identities=22% Similarity=0.380 Sum_probs=29.2
Q ss_pred cceeehh--cchhHHHHH-HccchhHHHHhhChH--HHHHhhhcCCCH
Q 034106 36 PRALAVA--CFDLSQFIQ-YHPAGRVIVTDLKAK--ERVMKLMNHENT 78 (103)
Q Consensus 36 ~~~laVA--c~Digefvr-~~p~gr~i~~~lg~K--~~vM~Lm~h~d~ 78 (103)
|..+||- .+|+..|.+ ++|.|- + ..+-|| ++.+.-+.|+..
T Consensus 21 ~~~vaI~G~VYDVT~~~~~~hPGG~-~-~~~AG~DaT~~f~~~~~~~~ 66 (102)
T 1j03_A 21 PIYVAIKGRVFDVTTGKSFYGSGGD-Y-SMFAGKDASRALGKMSKNEE 66 (102)
T ss_dssp CBEEEETTEEEECGGGHHHHSSSST-T-TTTTTSBCHHHHHHTCCCSS
T ss_pred CEEEEECCEEEECCCCccccCCCCc-c-cccccchHHHHHHHcCCChh
Confidence 5677775 889999988 588887 2 355555 677777777543
No 136
>3p14_A L-rhamnose isomerase; TIM barrel; 2.51A {Bacillus halodurans} SCOP: c.1.15.2 PDB: 3uu0_A 3uva_A 3uxi_A
Probab=24.36 E-value=48 Score=27.20 Aligned_cols=22 Identities=5% Similarity=-0.097 Sum_probs=18.2
Q ss_pred hhcCCCHHhHHHHHHHHHHHhc
Q 034106 72 LMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 72 Lm~h~d~eVr~eAL~avQklm~ 93 (103)
=++||||+||..|+.-+...+-
T Consensus 151 alTnPD~~VR~~AI~h~k~~id 172 (424)
T 3p14_A 151 TLAHPDQAIRQFWIDHCIASRK 172 (424)
T ss_dssp STTCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHH
Confidence 3689999999999988777663
No 137
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=23.62 E-value=56 Score=29.29 Aligned_cols=71 Identities=11% Similarity=0.206 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhccCC--C--cceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034106 20 FQILRVLLTILDTSS--D--PRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 20 ~~llk~L~~lL~~s~--d--~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
-++++.|..+.+... | +.+-+..|.=+|+|.|..-.....++- .=..+++-|..++++|+.-|-.|..++-
T Consensus 520 p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~--vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 520 VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT--VVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH--HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 356666666664332 2 234445678888877775444445544 3456778888899999999988877753
No 138
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=23.49 E-value=1.2e+02 Score=23.55 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=41.8
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
+.+-+.+.| .+.+|-+-.-|+-= ..+.+|....+++. .-..+-+++.++||-|.|+|+.++..+--
T Consensus 140 l~~~lk~~L-~d~~pyVRk~A~l~---~~kL~~~~pe~v~~--~~~~l~~ll~d~n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 140 IERYMKQAI-VDKVPSVSSSALVS---SLHLLKCSFDVVKR--WVNEAQEAASSDNIMVQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHHHHH-TCSSHHHHHHHHHH---HHHHTTTCHHHHHT--THHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHc-CCCCHHHHHHHHHH---HHHHhccCHHHHHH--HHHHHHHHhcCCCccHHHHHHHHHHHHHh
Confidence 444444444 34566432222211 33556666667764 45678889999999999999998877754
No 139
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A
Probab=23.03 E-value=36 Score=25.31 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.0
Q ss_pred HhccCCCcceeehhcch
Q 034106 29 ILDTSSDPRALAVACFD 45 (103)
Q Consensus 29 lL~~s~d~~~laVAc~D 45 (103)
-|.+...|.++.|+|.|
T Consensus 58 ~La~gQ~P~~lvI~CsD 74 (243)
T 2w3q_A 58 EQVKGQAPNFLWIGCAD 74 (243)
T ss_dssp HHHHCCCCSEEEEEECC
T ss_pred hhccCCCCCEEEEEecC
Confidence 34457899999999998
No 140
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=22.99 E-value=61 Score=27.20 Aligned_cols=75 Identities=7% Similarity=0.036 Sum_probs=50.2
Q ss_pred HHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcC---CCHHhHHHHHHHHHHHhcch
Q 034106 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH---ENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h---~d~eVr~eAL~avQklm~~~ 95 (103)
+-...+..+|..+.|+.+-..|+.=+-..++..=..-.-=++-+.|..||+++.+ +.+-||-+.-.++..++.+-
T Consensus 39 ~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~ 116 (971)
T 2x1g_F 39 QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHM 116 (971)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc
Confidence 3444678888777777766667666666666531100000334688999999965 36899999999999988763
No 141
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A
Probab=22.08 E-value=46 Score=24.96 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchhHHHH---HHccc------hhHHHHhhChHHHHHhhhcCCCHH
Q 034106 20 FQILRVLLTILDTSSDPRALAVACFDLSQFI---QYHPA------GRVIVTDLKAKERVMKLMNHENTE 79 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Digefv---r~~p~------gr~i~~~lg~K~~vM~Lm~h~d~e 79 (103)
.++-+.|.+++. |+.++-|+..|+.++= .+.|. --...+++. ..+|+.+...|++
T Consensus 163 ~~~g~~l~~~~~---~~~~l~V~SsDlsH~g~~fgy~~~~~~~~~~~~~~~~~D--~~~i~~i~~~d~~ 226 (293)
T 3bcz_A 163 QEFGKLFSKYLA---DPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLD--KMGMSIIEQLDPV 226 (293)
T ss_dssp HHHHHHHHHHHT---CTTEEEEEECCCCEEBGGGTBCCCCGGGCSHHHHHHHHH--HHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHh---CCCeEEEEeCCccCCCCCCCCCccccccchhHHHHHHHH--HHHHHHHHcCCHH
Confidence 345555556663 4479999999999871 11222 113344433 6778888777764
No 142
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=21.65 E-value=1.4e+02 Score=17.80 Aligned_cols=55 Identities=9% Similarity=0.081 Sum_probs=31.5
Q ss_pred HHHHHHHHhccCCCcceeehhcchhHHHHHHccch----hHHHHhhChHHHHHhhhcCCCHHh
Q 034106 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG----RVIVTDLKAKERVMKLMNHENTEV 80 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~g----r~i~~~lg~K~~vM~Lm~h~d~eV 80 (103)
+++.+-+++++ ..+-.-.-+.+-....+.|.- +.++++.+ ...|-.|+++.+|+.
T Consensus 10 iv~~ve~~l~~---~~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~-~~iI~~l~~~~~P~~ 68 (78)
T 1nkl_A 10 IIQKLEDMVGP---QPNEDTVTQAASQVCDKLKILRGLCKKIMRSFL-RRISWDILTGKKPQA 68 (78)
T ss_dssp HHHHHHHHHCS---SCCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHH-HHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHc---CCcHHHHHHHHHHHHhhCchhHHHHHHHHHHHH-HHHHHHHHHCCCHHH
Confidence 45666666632 233344455566666677753 44445544 455555668888874
No 143
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=21.55 E-value=81 Score=20.86 Aligned_cols=45 Identities=29% Similarity=0.486 Sum_probs=29.2
Q ss_pred HHHHHHhccCCCc------ceeehhcchhHHHHHHccchhHHHHhhCh--HHHH
Q 034106 24 RVLLTILDTSSDP------RALAVACFDLSQFIQYHPAGRVIVTDLKA--KERV 69 (103)
Q Consensus 24 k~L~~lL~~s~d~------~~laVAc~Digefvr~~p~gr~i~~~lg~--K~~v 69 (103)
+.+...| .|..| .+-|=-.+||+.-++-.|=-+.|++.|++ |..|
T Consensus 26 ~aiL~~~-gs~~p~~~~lEsiAAKIIkDisdkId~C~Cnkei~e~L~~~~k~~i 78 (95)
T 3k4t_A 26 KAILELL-GSQNPIKESLETVAAKIVNDLTKLINDCPCNKEILEALGTQPKEQL 78 (95)
T ss_dssp HHHHHHH-TTSCCHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHC-------
T ss_pred HHHHHHh-cCCCcchhhHHHHHHHHHHHHHHHHhcCcchHHHHHHHccCCcccc
Confidence 3444444 45666 23334469999999999999999999988 6665
No 144
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A
Probab=21.34 E-value=41 Score=24.81 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=13.7
Q ss_pred hccCCCcceeehhcch
Q 034106 30 LDTSSDPRALAVACFD 45 (103)
Q Consensus 30 L~~s~d~~~laVAc~D 45 (103)
|.+...|.++.|+|.|
T Consensus 32 La~gQ~P~~~vi~C~D 47 (223)
T 3qy1_A 32 LAQAQKPRFLWIGCSD 47 (223)
T ss_dssp HHSCCCCSEEEEEETT
T ss_pred hccCCCCCEEEEEecC
Confidence 4467899999999999
No 145
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=21.33 E-value=69 Score=23.97 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=29.9
Q ss_pred hhHHHHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcch-hHHHHHHc
Q 034106 5 PLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFD-LSQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~D-igefvr~~ 53 (103)
..+.++|+.+|...=-++-+.+.+.|..-.....-.|+.|| .|.|.+.|
T Consensus 151 a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~y 200 (294)
T 3hh8_A 151 KETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAY 200 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHc
Confidence 35667777777666555556666666433322233456788 56778877
No 146
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=21.24 E-value=74 Score=23.40 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=32.2
Q ss_pred hhHHHHhHHhhhhccHHHHHHHHHHhccCCCcceeehhcch-hHHHHHHc
Q 034106 5 PLFWHDNITNFEENDFQILRVLLTILDTSSDPRALAVACFD-LSQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVAc~D-igefvr~~ 53 (103)
..+.++|+.+|...=-++-+.+.+.|..... .. .|+.|| .|.|.+.|
T Consensus 144 a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~-~~-~v~~H~af~Yf~~~y 191 (284)
T 2prs_A 144 RAKLDANLKDFEAQLASTETQVGNELAPLKG-KG-YFVFHDAYGYFEKQF 191 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT-CC-EEEEESCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-Ce-EEEECccHHHHHHHC
Confidence 4678888888877666666777777754333 22 456788 67788877
No 147
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Probab=21.23 E-value=87 Score=24.39 Aligned_cols=37 Identities=14% Similarity=0.237 Sum_probs=24.6
Q ss_pred eeehhcchhHH--------------HHHHccchhHHHHhhChHHHHHhhhcCC
Q 034106 38 ALAVACFDLSQ--------------FIQYHPAGRVIVTDLKAKERVMKLMNHE 76 (103)
Q Consensus 38 ~laVAc~Dige--------------fvr~~p~gr~i~~~lg~K~~vM~Lm~h~ 76 (103)
.+|-+|||+|+ +...| +.+.++|..++...++ +|+.+
T Consensus 135 liAAl~HDv~HpG~~N~fli~~~s~LA~lY-nd~SvLEnhH~a~a~~-iL~~~ 185 (347)
T 1tbf_A 135 LIAALSHDLDHPGVSNQFLINTNSELALMY-NDESVLEHHHFDQCLM-ILNSP 185 (347)
T ss_dssp HHHHHHTTTTCCSSCHHHHHHTTCHHHHHT-TTSSHHHHHHHHHHHH-HHHST
T ss_pred HHHHHHccCCCCCCCCchHHhcCCHHHHHc-CCCcHHHHHHHHHHHH-HHcCc
Confidence 57778999993 44555 2468888888766554 44443
No 148
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=21.11 E-value=54 Score=27.11 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.4
Q ss_pred HHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034106 69 VMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 69 vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+.+.|+++|+++|..|+.|+.-++.+.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~ 65 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDA 65 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCc
Confidence 557789999999999999999998644
No 149
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=20.53 E-value=63 Score=21.38 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=23.7
Q ss_pred HHHHHHccchhH-HHHhhChHHHHHhhhcCCCHHhHH
Q 034106 47 SQFIQYHPAGRV-IVTDLKAKERVMKLMNHENTEVTK 82 (103)
Q Consensus 47 gefvr~~p~gr~-i~~~lg~K~~vM~Lm~h~d~eVr~ 82 (103)
.++|+..|.--. +++. +++.|+.|+ -.||+|++
T Consensus 27 yeLIq~lP~~l~qv~q~--~v~ai~sl~-~qDpnV~k 60 (97)
T 3g80_A 27 YELIKSLPAKLEQLAQE--TQATIQTLM-IADPNVNK 60 (97)
T ss_dssp HHHHHTHHHHHHHHHHH--HHHHHHTCC-CCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhcc-ccCchHHH
Confidence 467888886443 3444 788899988 77899985
No 150
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=20.18 E-value=1.9e+02 Score=18.75 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchhHHHHHHccchhHHHHhhChHHHHHhhhcC-CCHHhHHHHHHHHHHH
Q 034106 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH-ENTEVTKSALLCIQRL 91 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVAc~Digefvr~~p~gr~i~~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQkl 91 (103)
.++.+.|-+.++. .++.. |-|+=.-.+-.|--..++..-++=-.|=.|-.| +|++|+.-|=.-|-+|
T Consensus 15 ~~i~k~L~k~~~~-~~~~~----~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~W 82 (103)
T 1wjt_A 15 LRIAKKLEKMVSR-KKTEG----ALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 82 (103)
T ss_dssp HHHHHHHHHHHHT-TCCSS----HHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCHHH----HHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 3556666666542 22221 223333347778899999998888888899998 9999998876655544
No 151
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=20.16 E-value=1.1e+02 Score=17.86 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=18.9
Q ss_pred CChhHHHHhHHhhhhccH--HHHHHHHHHhc
Q 034106 3 KDPLFWHDNITNFEENDF--QILRVLLTILD 31 (103)
Q Consensus 3 ~se~FW~ENa~kf~e~~~--~llk~L~~lL~ 31 (103)
.+..||++ ..++..++. +.++.+++.|.
T Consensus 6 ~t~~a~kd-lk~l~~~~~~~~~~~~~i~~l~ 35 (88)
T 1z8m_A 6 LKKSFQKD-FDKLLLNGFDDSVLNEVILTLR 35 (88)
T ss_dssp BCHHHHHH-HHHHHTTTCCHHHHHHHHHHHT
T ss_pred ECHHHHHH-HHHHHHcCccHHHHHHHHHHHh
Confidence 46789985 777755554 56777777773
Done!