Query 034107
Match_columns 103
No_of_seqs 103 out of 170
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 09:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034107.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034107hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4111 Translocase of outer m 99.9 1.4E-24 3E-29 158.7 8.5 80 19-98 40-125 (136)
2 PF04281 Tom22: Mitochondrial 99.9 1.9E-23 4.1E-28 152.7 7.4 83 19-101 49-137 (137)
3 TIGR00986 3a0801s05tom22 mitoc 99.9 4.6E-23 9.9E-28 152.2 7.8 82 20-101 48-135 (145)
4 PF15465 DUF4634: Domain of un 72.8 1.1 2.4E-05 32.9 -0.1 22 66-87 7-30 (129)
5 PF04281 Tom22: Mitochondrial 65.9 38 0.00082 25.0 6.7 68 16-83 50-128 (137)
6 KOG0860 Synaptobrevin/VAMP-lik 59.5 25 0.00053 25.5 4.7 42 18-59 47-89 (116)
7 PF01737 Ycf9: YCF9; InterPro 59.1 7.3 0.00016 25.2 1.7 21 59-79 9-29 (59)
8 PF05781 MRVI1: MRVI1 protein; 58.4 15 0.00032 32.7 4.0 47 31-77 453-499 (538)
9 TIGR03043 PS_II_psbZ photosyst 41.7 7.7 0.00017 25.0 -0.2 21 59-79 9-29 (58)
10 CHL00082 psbZ photosystem II p 36.0 8.2 0.00018 25.2 -0.8 21 59-79 12-32 (62)
11 PRK02576 psbZ photosystem II r 34.5 8.7 0.00019 25.1 -0.8 21 59-79 12-32 (62)
12 COG5494 Predicted thioredoxin/ 26.7 2.2E+02 0.0047 23.3 5.7 55 41-96 170-258 (265)
13 PF09777 OSTMP1: Osteopetrosis 26.2 55 0.0012 25.7 2.2 19 58-76 190-208 (237)
14 KOG4431 Uncharacterized protei 25.1 1.3E+02 0.0028 21.3 3.7 70 1-73 1-84 (100)
15 COG3346 Uncharacterized conser 23.6 2.7E+02 0.0058 22.5 5.7 51 52-102 5-61 (252)
16 PRK14740 kdbF potassium-transp 21.2 1.2E+02 0.0026 17.1 2.3 24 57-80 4-27 (29)
17 COG2610 GntT H+/gluconate symp 21.1 1.7E+02 0.0038 25.3 4.4 54 25-83 83-136 (442)
No 1
>KOG4111 consensus Translocase of outer mitochondrial membrane complex, subunit TOM22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-24 Score=158.71 Aligned_cols=80 Identities=49% Similarity=0.643 Sum_probs=71.0
Q ss_pred hHHHHHHHhhcc-chhhhhhh-----hhhhHHHHHHHHHhhhcceehhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 034107 19 FLAKVTRRVSDT-PIVAYTKQ-----KASDAAYVSHKLLKSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELEMQQQSL 92 (103)
Q Consensus 19 ~~~~~l~~~~~~-~i~~~~~~-----~~s~t~~~~k~~~~~sGka~WIv~TSaLiL~vPli~e~erEqQl~EmE~qqq~l 92 (103)
.-|++++||... .++..+.+ +++++++++||+|+|+|+++||++||||||+||||||+|||||++|+|+||..+
T Consensus 40 ~dETi~eRi~gLkEivp~g~R~~i~~~~~~av~~~kk~~~fsg~a~Wi~tTt~lIL~vP~i~e~E~~q~~~e~e~Qq~q~ 119 (136)
T KOG4111|consen 40 EDETILERIWGLKEIVPQGRRSAIGATAGDAVFVVKKLYSFSGKAAWIATTTFLILVVPLIFETEREQQLQEQEKQQRQQ 119 (136)
T ss_pred cchhHHHHHHhhHhhcchhhhhhhhhcchhHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 778999999997 66665555 999999999999999999999999999999999999999999999999999855
Q ss_pred hCCCCC
Q 034107 93 LGAPPL 98 (103)
Q Consensus 93 lG~~~~ 98 (103)
||+|+.
T Consensus 120 ll~p~~ 125 (136)
T KOG4111|consen 120 LLAPNV 125 (136)
T ss_pred hCCCcc
Confidence 555553
No 2
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=99.89 E-value=1.9e-23 Score=152.66 Aligned_cols=83 Identities=29% Similarity=0.394 Sum_probs=75.4
Q ss_pred hHHHHHHHhhc------cchhhhhhhhhhhHHHHHHHHHhhhcceehhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHH
Q 034107 19 FLAKVTRRVSD------TPIVAYTKQKASDAAYVSHKLLKSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELEMQQQSL 92 (103)
Q Consensus 19 ~~~~~l~~~~~------~~i~~~~~~~~s~t~~~~k~~~~~sGka~WIv~TSaLiL~vPli~e~erEqQl~EmE~qqq~l 92 (103)
.-|++++||.. -.+|+.++++++++++++|++|+|+||++||++||||||||||+|++++|||+.|||++|++.
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~g~a~Wi~tTSallLgvPl~l~ie~EqQl~emEkeq~~q 128 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSFSGKALWIVTTSALLLGVPLALEIEREQQLVEMEKEQQMQ 128 (137)
T ss_pred ccccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888875 248889999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCCCCCCC
Q 034107 93 LGAPPLAPA 101 (103)
Q Consensus 93 lG~~~~~~~ 101 (103)
-+++-+.+|
T Consensus 129 q~~~~~Lap 137 (137)
T PF04281_consen 129 QQANEMLAP 137 (137)
T ss_pred HHHhhhcCC
Confidence 888776554
No 3
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=99.88 E-value=4.6e-23 Score=152.16 Aligned_cols=82 Identities=27% Similarity=0.324 Sum_probs=74.6
Q ss_pred HHHHHHHhhcc------chhhhhhhhhhhHHHHHHHHHhhhcceehhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHh
Q 034107 20 LAKVTRRVSDT------PIVAYTKQKASDAAYVSHKLLKSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELEMQQQSLL 93 (103)
Q Consensus 20 ~~~~l~~~~~~------~i~~~~~~~~s~t~~~~k~~~~~sGka~WIv~TSaLiL~vPli~e~erEqQl~EmE~qqq~ll 93 (103)
.|++.+||..- ++|+.+++.++++++++|++|+|+||++||++||||||||||+|++++|||+.|||++|.|..
T Consensus 48 ~ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~~sfsGkalWivsTSaLLLgVPlala~~~Eqql~emEkE~~~q~ 127 (145)
T TIGR00986 48 EETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKSTLSFAGRAAWAVSTSALLLGVPFAISFAEEQQLAEMEKEARMQE 127 (145)
T ss_pred cCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888773 488899999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCCC
Q 034107 94 GAPPLAPA 101 (103)
Q Consensus 94 G~~~~~~~ 101 (103)
|+|-+.+|
T Consensus 128 ~a~e~lap 135 (145)
T TIGR00986 128 LANDVLAA 135 (145)
T ss_pred hhhhhcCC
Confidence 88875443
No 4
>PF15465 DUF4634: Domain of unknown function (DUF4634)
Probab=72.85 E-value=1.1 Score=32.87 Aligned_cols=22 Identities=45% Similarity=0.715 Sum_probs=18.0
Q ss_pred HHHHHHHHH--HHhhHhhHHHHHH
Q 034107 66 LILVVPLII--EMDREQQFNELEM 87 (103)
Q Consensus 66 LiL~vPli~--e~erEqQl~EmE~ 87 (103)
.||+||||+ |+|+|.+++|.+-
T Consensus 7 aIlaVPLILGQEYEdEe~leEdey 30 (129)
T PF15465_consen 7 AILAVPLILGQEYEDEERLEEDEY 30 (129)
T ss_pred hHhhhhhhccccccchhhcccccc
Confidence 589999999 6888888888553
No 5
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=65.85 E-value=38 Score=24.96 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=43.4
Q ss_pred ccchHHHHHH------Hhhcc---chhhhhhhhhhhHHHHHHHHHhhhcceehhhhHHHHHHHH--HHHHHHhhHhhHH
Q 034107 16 EVGFLAKVTR------RVSDT---PIVAYTKQKASDAAYVSHKLLKSTGKAAWIAGTTFLILVV--PLIIEMDREQQFN 83 (103)
Q Consensus 16 ~~~~~~~~l~------~~~~~---~i~~~~~~~~s~t~~~~k~~~~~sGka~WIv~TSaLiL~v--Pli~e~erEqQl~ 83 (103)
++-+.+++.+ --.|. ..++.+.+.+..+.++.+++.|.....+=+++-=.++-.. ==..++|+|||++
T Consensus 50 dETl~ERl~aLkdi~P~~~R~~i~~~~~~~~~~~k~~~~~~g~a~Wi~tTSallLgvPl~l~ie~EqQl~emEkeq~~q 128 (137)
T PF04281_consen 50 DETLLERLWALKDIFPPSVRNWISSTVSTTSSAVKSLFSFSGKALWIVTTSALLLGVPLALEIEREQQLVEMEKEQQMQ 128 (137)
T ss_pred cccHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4448888875 33343 4455566666677788888888888888777654443222 2356777777543
No 6
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.45 E-value=25 Score=25.52 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=29.0
Q ss_pred chHHHHHHHhhc-cchhhhhhhhhhhHHHHHHHHHhhhcceeh
Q 034107 18 GFLAKVTRRVSD-TPIVAYTKQKASDAAYVSHKLLKSTGKAAW 59 (103)
Q Consensus 18 ~~~~~~l~~~~~-~~i~~~~~~~~s~t~~~~k~~~~~sGka~W 59 (103)
++.+.||+|=-+ +.+.+++...-..+..+-++.-+.-++-=|
T Consensus 47 ~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wW 89 (116)
T KOG0860|consen 47 ENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWW 89 (116)
T ss_pred HhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889998887 578888877777666666665555555444
No 7
>PF01737 Ycf9: YCF9; InterPro: IPR002644 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents PsbZ (Ycf9), which is a core low molecular weight transmembrane protein of photosystem II in thylakoid-containing chloroplasts of cyanobacteria and plants. It is thought to be located at the interface of PSII and LHCII (light-harvesting complex II) complexes, the latter containing the light-harvesting antenna. PsbZ appears to act as a structural factor, or linker, that stabilises the PSII-LHCII supercomplexes, which fail to form in PsbZ-deficient mutants. This may in part be due to the marked decrease in two LHCII antenna proteins, CP26 and CP29, found in PsbZ-deficient mutants, which result in structural changes, as well as functional modifications in PSII []. PsbZ may also be involved in photo-protective processes under sub-optimal growth conditions.; GO: 0015979 photosynthesis, 0042549 photosystem II stabilization, 0009523 photosystem II, 0009539 photosystem II reaction center; PDB: 3A0B_Z 3ARC_Z 3A0H_Z 3PRQ_Z 4FBY_l 2AXT_z 3PRR_Z 3BZ1_Z 3KZI_Z 1S5L_Z ....
Probab=59.14 E-value=7.3 Score=25.17 Aligned_cols=21 Identities=24% Similarity=0.349 Sum_probs=16.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhH
Q 034107 59 WIAGTTFLILVVPLIIEMDRE 79 (103)
Q Consensus 59 WIv~TSaLiL~vPli~e~erE 79 (103)
=|+.+..|+++||++++..++
T Consensus 9 Li~~Sf~LVVgVPV~~Asp~~ 29 (59)
T PF01737_consen 9 LIALSFLLVVGVPVVFASPDG 29 (59)
T ss_dssp HHHHHHHHHHHHHHHHHSTSC
T ss_pred HHHHHHHHHHHHHHhhcCCcc
Confidence 467788899999999986554
No 8
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=58.36 E-value=15 Score=32.71 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=33.7
Q ss_pred chhhhhhhhhhhHHHHHHHHHhhhcceehhhhHHHHHHHHHHHHHHh
Q 034107 31 PIVAYTKQKASDAAYVSHKLLKSTGKAAWIAGTTFLILVVPLIIEMD 77 (103)
Q Consensus 31 ~i~~~~~~~~s~t~~~~k~~~~~sGka~WIv~TSaLiL~vPli~e~e 77 (103)
|.+....+.+...+..++..|....+++||..+-++||++=+.|-..
T Consensus 453 ~~~~s~~srves~~~~Lk~s~pKanK~LWIsvAliVLLAaLlSfLtg 499 (538)
T PF05781_consen 453 WDKSSRYSRVESWASYLKTSFPKANKVLWISVALIVLLAALLSFLTG 499 (538)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33434344455566778889999999999999888777777666543
No 9
>TIGR03043 PS_II_psbZ photosystem II core protein PsbZ. PsbZ is a core protein of photosystem II in thylakoid-containing Cyanobacteria and plant chloroplasts. The original Chlamydomonas gene symbol, ycf9, is a synonym. PsbZ controls the interaction of the reaction center core with the light-harvesting antenna.
Probab=41.67 E-value=7.7 Score=24.96 Aligned_cols=21 Identities=14% Similarity=0.203 Sum_probs=16.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhH
Q 034107 59 WIAGTTFLILVVPLIIEMDRE 79 (103)
Q Consensus 59 WIv~TSaLiL~vPli~e~erE 79 (103)
=|+.+..|+++||++++.-++
T Consensus 9 Li~~Sf~LVVgVPV~~Asp~~ 29 (58)
T TIGR03043 9 LVLLSFVLVVGVPVALASPGG 29 (58)
T ss_pred HHHHHHHHHhhceeEEeCCCc
Confidence 367788899999999975443
No 10
>CHL00082 psbZ photosystem II protein Z
Probab=36.04 E-value=8.2 Score=25.18 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=16.5
Q ss_pred hhhhHHHHHHHHHHHHHHhhH
Q 034107 59 WIAGTTFLILVVPLIIEMDRE 79 (103)
Q Consensus 59 WIv~TSaLiL~vPli~e~erE 79 (103)
=|+.+..|+++||++|+.-++
T Consensus 12 Li~~Sf~LVVgVPV~~Asp~~ 32 (62)
T CHL00082 12 LIATSFLLVIGVPVVFASPDG 32 (62)
T ss_pred HHHHHHHHHheeeeEEECCCc
Confidence 467788899999999985443
No 11
>PRK02576 psbZ photosystem II reaction center protein Z; Provisional
Probab=34.49 E-value=8.7 Score=25.06 Aligned_cols=21 Identities=14% Similarity=0.249 Sum_probs=16.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhH
Q 034107 59 WIAGTTFLILVVPLIIEMDRE 79 (103)
Q Consensus 59 WIv~TSaLiL~vPli~e~erE 79 (103)
=|+.+..|+++||++|+.-++
T Consensus 12 Li~~SfiLVVgVPV~~Asp~g 32 (62)
T PRK02576 12 LVVMSFVLVVGVPVAYASPQN 32 (62)
T ss_pred HHHHHHHHHheeeeEEECCCc
Confidence 367788899999999986554
No 12
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=2.2e+02 Score=23.29 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhhhccee----------------hhhhHHHH-HHHHH-----------------HHHHHhhHhhHHHHH
Q 034107 41 SDAAYVSHKLLKSTGKAA----------------WIAGTTFL-ILVVP-----------------LIIEMDREQQFNELE 86 (103)
Q Consensus 41 s~t~~~~k~~~~~sGka~----------------WIv~TSaL-iL~vP-----------------li~e~erEqQl~EmE 86 (103)
+.+..+++-+||.-+... |.+.-.++ =+|+| +.++--+|- +...|
T Consensus 170 ~ls~gfVREi~Wl~~~~~~~~~l~~~v~~~~f~~WLlakg~vGRvGLp~yPr~~~~~~~V~eay~fll~~g~~~-~~rV~ 248 (265)
T COG5494 170 NLSSGFVREIFWLYERKISKETLTQKVPVEVFAHWLLAKGAVGRVGLPIYPRSDSTVMRVLEAYNFLLENGDEI-FNRVQ 248 (265)
T ss_pred HHHHhHHHHHHHHHhcccCccccceeeehhHHHHHHHhhcccccccCCCCCCCCchHHHHHHHHHHHHHhHHHH-HHHHH
Confidence 455677777777665554 87766443 25566 445555666 77789
Q ss_pred HHHHHHhCCC
Q 034107 87 MQQQSLLGAP 96 (103)
Q Consensus 87 ~qqq~llG~~ 96 (103)
+||+.+||-.
T Consensus 249 ~EQ~~ilgd~ 258 (265)
T COG5494 249 KEQMEILGDE 258 (265)
T ss_pred HHHHhhhhhh
Confidence 9999999864
No 13
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=26.22 E-value=55 Score=25.67 Aligned_cols=19 Identities=11% Similarity=0.452 Sum_probs=15.8
Q ss_pred ehhhhHHHHHHHHHHHHHH
Q 034107 58 AWIAGTTFLILVVPLIIEM 76 (103)
Q Consensus 58 ~WIv~TSaLiL~vPli~e~ 76 (103)
.++++-+++++++|++|-+
T Consensus 190 ~~~i~v~~~vl~lpv~FY~ 208 (237)
T PF09777_consen 190 TAVIAVSVFVLFLPVLFYL 208 (237)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4678888999999999964
No 14
>KOG4431 consensus Uncharacterized protein, induced by hypoxia [General function prediction only]
Probab=25.07 E-value=1.3e+02 Score=21.30 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=43.4
Q ss_pred CCCccccccccCCCCccchHHHHHHHhhccchhhhhhhhhhhHHHHHHHHHhhh-cceeh-------------hhhHHHH
Q 034107 1 MSSGQGKKRLTNNSGEVGFLAKVTRRVSDTPIVAYTKQKASDAAYVSHKLLKST-GKAAW-------------IAGTTFL 66 (103)
Q Consensus 1 ~~~~~~~k~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~s~t~~~~k~~~~~s-Gka~W-------------Iv~TSaL 66 (103)
||.-.+. +++..++.....+.++.+..+.|++.-+.-. ++.-++-.+|++. +--.| -++..||
T Consensus 1 ~s~~~~~-s~~~~~ed~~~~ekl~rk~kenP~VPlG~l~--t~aal~~g~y~~r~rGn~~~sq~lmr~RVaAQgftV~AL 77 (100)
T KOG4431|consen 1 MSENEEL-SLPSYEEDMSQKEKLLRKAKENPLVPLGCLG--TTAALTAGLYKFRSRGNSKMSQHLMRTRVAAQGFTVGAL 77 (100)
T ss_pred CCccccC-CCCCCcchhhHHHHHHHHHHhCCCeeehHHH--HHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555 5555555556999999999999988877632 3334445666666 22222 3445577
Q ss_pred HHHHHHH
Q 034107 67 ILVVPLI 73 (103)
Q Consensus 67 iL~vPli 73 (103)
++|+-+.
T Consensus 78 ~~G~~~~ 84 (100)
T KOG4431|consen 78 VLGLAYT 84 (100)
T ss_pred Hhhhhhh
Confidence 7777665
No 15
>COG3346 Uncharacterized conserved protein [Function unknown]
Probab=23.58 E-value=2.7e+02 Score=22.52 Aligned_cols=51 Identities=24% Similarity=0.265 Sum_probs=34.6
Q ss_pred hhhcceehhhhHHHHHHHHHHHHHHhhHhhHHH---HH---HHHHHHhCCCCCCCCC
Q 034107 52 KSTGKAAWIAGTTFLILVVPLIIEMDREQQFNE---LE---MQQQSLLGAPPLAPAQ 102 (103)
Q Consensus 52 ~~sGka~WIv~TSaLiL~vPli~e~erEqQl~E---mE---~qqq~llG~~~~~~~~ 102 (103)
...++..|...+..++++++.+|...-==|+.- .+ .+.+-.+..+|++.++
T Consensus 5 ~~~~~~~~~~~l~~l~~~~~~il~~LGtWQl~Rl~wK~~lia~ie~r~~appv~l~~ 61 (252)
T COG3346 5 ASTRRRRWLALLLLLVLATFAILLGLGTWQLQRLHWKLALIARIEARLHAPPVPLPK 61 (252)
T ss_pred ccccccchhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCCCccc
Confidence 456788899999999999999988654433332 22 2333677778876654
No 16
>PRK14740 kdbF potassium-transporting ATPase subunit F; Provisional
Probab=21.17 E-value=1.2e+02 Score=17.13 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=20.5
Q ss_pred eehhhhHHHHHHHHHHHHHHhhHh
Q 034107 57 AAWIAGTTFLILVVPLIIEMDREQ 80 (103)
Q Consensus 57 a~WIv~TSaLiL~vPli~e~erEq 80 (103)
..|+-+-++..|++=++++.-|..
T Consensus 4 ~~wls~a~a~~Lf~YLv~ALlRae 27 (29)
T PRK14740 4 LDWLSLALATGLFVYLLVALLRAD 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 368999999999999999988765
No 17
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism]
Probab=21.09 E-value=1.7e+02 Score=25.31 Aligned_cols=54 Identities=19% Similarity=0.284 Sum_probs=31.5
Q ss_pred HHhhccchhhhhhhhhhhHHHHHHHHHhhhcceehhhhHHHHHHHHHHHHHHhhHhhHH
Q 034107 25 RRVSDTPIVAYTKQKASDAAYVSHKLLKSTGKAAWIAGTTFLILVVPLIIEMDREQQFN 83 (103)
Q Consensus 25 ~~~~~~~i~~~~~~~~s~t~~~~k~~~~~sGka~WIv~TSaLiL~vPli~e~erEqQl~ 83 (103)
+||+++=++..+++.+..+.-.+.-.+.+. ++.=+.+++..|+++++-||-..-
T Consensus 83 ~~IA~tii~~~G~kr~~~Al~l~g~i~~~~-----vF~dv~~v~l~Pia~alak~~~is 136 (442)
T COG2610 83 ESIADTLIRKFGEKRALLALVLAGLILGIP-----VFFDVGFVLLIPLAFALAKEAGIS 136 (442)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHhhh-----HHhhhHHHHHHHHHHHHHHHcCCC
Confidence 345555555555555555544444443332 555566777788888888886443
Done!