Query 034107
Match_columns 103
No_of_seqs 103 out of 170
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 16:44:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_Z Photosystem II reaction 59.6 6.2 0.00021 24.8 2.4 21 59-79 12-32 (62)
2 2lk9_A Bone marrow stromal ant 13.4 99 0.0034 17.3 1.6 12 67-78 19-30 (35)
3 4ffb_C Protein STU2; tubulin f 10.3 1.2E+02 0.0042 21.5 1.8 48 44-99 204-251 (278)
4 3dl8_E Protein-export membrane 10.0 86 0.0029 21.1 0.8 31 49-79 46-76 (107)
5 1knz_A NS34, NSP3, nonstructur 9.4 1.2E+02 0.0041 22.2 1.4 27 42-68 6-32 (164)
6 2rmf_A Urocortin, HUCN1; CRF l 8.9 3.2E+02 0.011 15.6 3.3 8 72-79 9-16 (40)
7 1mhm_A Adometdc, samdc, S-aden 8.8 58 0.002 25.5 -0.5 18 62-79 16-33 (288)
8 3hd7_A Vesicle-associated memb 8.4 4.3E+02 0.015 16.6 4.6 31 19-49 24-55 (91)
9 1pfi_A Major coat protein of P 8.2 3.4E+02 0.012 15.8 2.8 22 58-79 24-45 (46)
10 4f4l_A ION transport protein; 7.9 1.2E+02 0.0042 19.6 0.8 19 58-76 76-94 (112)
No 1
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=59.61 E-value=6.2 Score=24.81 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhH
Q 034107 59 WIAGTTFLILVVPLIIEMDRE 79 (103)
Q Consensus 59 WIv~TSaLiL~vPli~e~erE 79 (103)
=|+.+..|+++||++++.-++
T Consensus 12 Li~~Sf~LVVgVPV~~Asp~~ 32 (62)
T 3arc_Z 12 LVILSFVMVIGVPVAYASPQD 32 (62)
T ss_dssp HHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHheeeeEEECCcc
Confidence 467788899999999986644
No 2
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=13.43 E-value=99 Score=17.29 Aligned_cols=12 Identities=58% Similarity=0.614 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhh
Q 034107 67 ILVVPLIIEMDR 78 (103)
Q Consensus 67 iL~vPli~e~er 78 (103)
.|+||+|+-.-+
T Consensus 19 ~LgV~LI~f~~k 30 (35)
T 2lk9_A 19 ILGVPLIIFTIK 30 (35)
T ss_dssp HHHHHHHHHC--
T ss_pred HhcchheEEeee
Confidence 478898876544
No 3
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=10.32 E-value=1.2e+02 Score=21.48 Aligned_cols=48 Identities=13% Similarity=0.155 Sum_probs=23.3
Q ss_pred HHHHHHHHhhhcceehhhhHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHhCCCCCC
Q 034107 44 AYVSHKLLKSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELEMQQQSLLGAPPLA 99 (103)
Q Consensus 44 ~~~~k~~~~~sGka~WIv~TSaLiL~vPli~e~erEqQl~EmE~qqq~llG~~~~~ 99 (103)
...+-.+|++.|...+. ..+..++-.+..|+.++|.+..-+-|.+|++
T Consensus 204 ~~l~~~ly~~~G~~~~~--------~~~~~l~~lkp~~~k~le~~f~k~~~~~~~~ 251 (278)
T 4ffb_C 204 MNLIVEIYKVTGNNSDL--------LEEILFKKLKPIQVKDLHKLFAKVGDEPSSS 251 (278)
T ss_dssp HHHHHHHHTC-------------------CTTSSCHHHHHHHHHHHSCCCC-----
T ss_pred HHHHHHHHHHhCcchhh--------hhhhhhhcCCHHHHHHHHHHHHhcCCCCCCC
Confidence 34555566666654432 2355567778888999999888665655543
No 4
>3dl8_E Protein-export membrane protein SECG; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=9.97 E-value=86 Score=21.14 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=21.5
Q ss_pred HHHhhhcceehhhhHHHHHHHHHHHHHHhhH
Q 034107 49 KLLKSTGKAAWIAGTTFLILVVPLIIEMDRE 79 (103)
Q Consensus 49 ~~~~~sGka~WIv~TSaLiL~vPli~e~erE 79 (103)
+.-.+-.|..|+++.-|+++.+-+.+-..+.
T Consensus 46 g~~~~L~K~T~ilailF~v~sl~L~~l~~~~ 76 (107)
T 3dl8_E 46 GVETILTKATYWLGALFLVLALLLSVIPKEK 76 (107)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHHHHCC----
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777889999999999888777655443
No 5
>1knz_A NS34, NSP3, nonstructural RNA-binding protein 34; protein-ssRNA complex, viral protein/RNA complex; 2.45A {Simian rotavirus A} SCOP: e.34.1.1
Probab=9.36 E-value=1.2e+02 Score=22.15 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhhhcceehhhhHHHHHH
Q 034107 42 DAAYVSHKLLKSTGKAAWIAGTTFLIL 68 (103)
Q Consensus 42 ~t~~~~k~~~~~sGka~WIv~TSaLiL 68 (103)
.+...+++.++.++.++|+.+||.+=+
T Consensus 6 aTq~~v~si~n~af~aA~~~a~s~ld~ 32 (164)
T 1knz_A 6 STQQMAVSIINSSFEAAVVAATSALEN 32 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888999999999998887644
No 6
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=8.93 E-value=3.2e+02 Score=15.57 Aligned_cols=8 Identities=25% Similarity=0.343 Sum_probs=4.1
Q ss_pred HHHHHhhH
Q 034107 72 LIIEMDRE 79 (103)
Q Consensus 72 li~e~erE 79 (103)
|-|++.|+
T Consensus 9 LTFHlLR~ 16 (40)
T 2rmf_A 9 LTFHLLRT 16 (40)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 44555554
No 7
>1mhm_A Adometdc, samdc, S-adenosylmethionine decarboxylase; covalent pyruvoyl group, lyase; 2.30A {Solanum tuberosum} SCOP: d.156.1.1
Probab=8.82 E-value=58 Score=25.53 Aligned_cols=18 Identities=39% Similarity=0.696 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHHHHHhhH
Q 034107 62 GTTFLILVVPLIIEMDRE 79 (103)
Q Consensus 62 ~TSaLiL~vPli~e~erE 79 (103)
+||-|+.++|.+|++.++
T Consensus 16 GTT~LL~~l~~ll~la~~ 33 (288)
T 1mhm_A 16 GTTKLLLAIPPILRLAET 33 (288)
T ss_dssp TTSCGGGGHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHH
Confidence 788999999999998886
No 8
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=8.38 E-value=4.3e+02 Score=16.58 Aligned_cols=31 Identities=13% Similarity=0.079 Sum_probs=15.5
Q ss_pred hHHHHHHHhhc-cchhhhhhhhhhhHHHHHHH
Q 034107 19 FLAKVTRRVSD-TPIVAYTKQKASDAAYVSHK 49 (103)
Q Consensus 19 ~~~~~l~~~~~-~~i~~~~~~~~s~t~~~~k~ 49 (103)
+.+.+|+|=-+ ..++.++.+..+.+..+-+.
T Consensus 24 NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~ 55 (91)
T 3hd7_A 24 NVDKVLERDQKLSELDDRADALQAGASQFETS 55 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 45666665544 24555555544444433333
No 9
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=8.18 E-value=3.4e+02 Score=15.80 Aligned_cols=22 Identities=32% Similarity=0.526 Sum_probs=18.5
Q ss_pred ehhhhHHHHHHHHHHHHHHhhH
Q 034107 58 AWIAGTTFLILVVPLIIEMDRE 79 (103)
Q Consensus 58 ~WIv~TSaLiL~vPli~e~erE 79 (103)
..|++.-+++++.-|||.+.|-
T Consensus 24 ~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 24 GYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4688888999999999998773
No 10
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=7.92 E-value=1.2e+02 Score=19.59 Aligned_cols=19 Identities=32% Similarity=0.310 Sum_probs=9.0
Q ss_pred ehhhhHHHHHHHHHHHHHH
Q 034107 58 AWIAGTTFLILVVPLIIEM 76 (103)
Q Consensus 58 ~WIv~TSaLiL~vPli~e~ 76 (103)
.|++..++++|-+-+++-+
T Consensus 76 ~fi~i~~fi~lNLfiaVi~ 94 (112)
T 4f4l_A 76 PFIMLTTFTVLNLFIGIIV 94 (112)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555555555544444433
Done!