Query 034107
Match_columns 103
No_of_seqs 103 out of 170
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 16:44:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034107.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034107hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtz1 f.17.5.1 (Z:1-62) Phot 64.3 2.1 0.00016 25.5 2.4 21 59-79 12-32 (62)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 9.5 88 0.0064 16.0 1.9 15 57-71 3-17 (34)
3 d1pvga1 d.14.1.3 (A:246-406) D 7.8 1.4E+02 0.01 19.3 2.9 34 3-36 118-155 (161)
4 d2ciwa1 a.39.3.1 (A:0-119) Clo 7.7 86 0.0063 19.8 1.7 46 23-68 32-79 (120)
5 d1vjoa_ c.67.1.3 (A:) Alanine- 6.1 3.5E+02 0.025 17.5 4.4 47 7-53 17-66 (377)
6 d2gf5a2 a.77.1.4 (A:2-83) FADD 5.8 1.4E+02 0.01 16.8 1.9 25 13-37 55-79 (82)
7 d1d8wa_ c.1.15.2 (A:) L-rhamno 5.2 1.4E+02 0.01 22.8 1.9 32 55-87 332-363 (416)
8 d1jl0a_ d.156.1.1 (A:) S-adeno 4.5 68 0.005 23.6 -0.4 19 62-80 79-97 (325)
9 d2bu3a1 d.3.1.14 (A:29-238) Pr 4.4 70 0.0051 21.9 -0.4 24 1-24 8-31 (210)
10 d1kcfa1 a.140.2.1 (A:3-38) Mit 4.1 1.2E+02 0.0084 15.5 0.4 12 22-33 24-35 (36)
No 1
>d2axtz1 f.17.5.1 (Z:1-62) Photosystem II reaction center protein Z, PsbZ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=64.32 E-value=2.1 Score=25.53 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=16.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhH
Q 034107 59 WIAGTTFLILVVPLIIEMDRE 79 (103)
Q Consensus 59 WIv~TSaLiL~vPli~e~erE 79 (103)
=|+.+..|+++||++|+--++
T Consensus 12 Li~~SF~lVVgVPV~~ASP~g 32 (62)
T d2axtz1 12 LVILSFVMVIGVPVAYASPQD 32 (62)
T ss_dssp HHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHheeceEEEECCCc
Confidence 467788899999999986544
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.48 E-value=88 Score=16.03 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=10.0
Q ss_pred eehhhhHHHHHHHHH
Q 034107 57 AAWIAGTTFLILVVP 71 (103)
Q Consensus 57 a~WIv~TSaLiL~vP 71 (103)
-+|+++|-+=+.++-
T Consensus 3 PLWlv~tv~G~~vi~ 17 (34)
T d2axtj1 3 PLWIVATVAGMGVIV 17 (34)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cEEEeeehhhhhhHh
Confidence 479998876555443
No 3
>d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.80 E-value=1.4e+02 Score=19.34 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=24.8
Q ss_pred CccccccccCCCCcc----chHHHHHHHhhccchhhhh
Q 034107 3 SGQGKKRLTNNSGEV----GFLAKVTRRVSDTPIVAYT 36 (103)
Q Consensus 3 ~~~~~k~l~~~~~~~----~~~~~~l~~~~~~~i~~~~ 36 (103)
++|=|-+|+....+- .+-+.++.++..+.|....
T Consensus 118 ~sQTK~~L~t~~~~fgs~~~~~~~fi~ki~K~~ii~~i 155 (161)
T d1pvga1 118 TSQTKEQLTTRVKDFGSRCEIPLEYINKIMKTDLATRM 155 (161)
T ss_dssp SSTTCCSBCCCGGGSSSCCCCCHHHHHHHTTSHHHHHH
T ss_pred cCcccccccCchhhccCcccchHHHHHHHHHhHHHHHH
Confidence 579999999877663 3667788888777666553
No 4
>d2ciwa1 a.39.3.1 (A:0-119) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]}
Probab=7.67 E-value=86 Score=19.85 Aligned_cols=46 Identities=4% Similarity=-0.003 Sum_probs=30.3
Q ss_pred HHHHhhccchhhh-hhh-hhhhHHHHHHHHHhhhcceehhhhHHHHHH
Q 034107 23 VTRRVSDTPIVAY-TKQ-KASDAAYVSHKLLKSTGKAAWIAGTTFLIL 68 (103)
Q Consensus 23 ~l~~~~~~~i~~~-~~~-~~s~t~~~~k~~~~~sGka~WIv~TSaLiL 68 (103)
.||.++++.+..+ +++ ........++..|.+.-..+=++++.++++
T Consensus 32 gLNaLANHGyLPrdG~nIt~~~l~~a~~~~~n~~~~l~~~l~~~a~~~ 79 (120)
T d2ciwa1 32 ALNALANHGYIPHDGRAISRETLQNAFLNHMGIANSVIELALTNAFVV 79 (120)
T ss_dssp HHHHHHHTTSSCTTCEEECHHHHHHHHHHHHCBCHHHHHHHHHHHHHH
T ss_pred hhHHHHhcCccCCCCcccCHHHHHHHHHHHhCccHHHHHHHHHhhHhh
Confidence 5778888765555 554 566667777888888776555555555443
No 5
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}
Probab=6.05 E-value=3.5e+02 Score=17.51 Aligned_cols=47 Identities=11% Similarity=0.061 Sum_probs=32.9
Q ss_pred cccccCCCCccchHHHHHHHhhccchhhhhhhhhhh---HHHHHHHHHhh
Q 034107 7 KKRLTNNSGEVGFLAKVTRRVSDTPIVAYTKQKASD---AAYVSHKLLKS 53 (103)
Q Consensus 7 ~k~l~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~s~---t~~~~k~~~~~ 53 (103)
-+++-++|+-...-++|++.+++..+-++..+.... +-..++.++..
T Consensus 17 p~~~l~~PGP~~v~~~Vl~am~~~~~~hr~~ef~~i~~~~r~~l~~ll~~ 66 (377)
T d1vjoa_ 17 PSRLLLGPGPSNAHPSVLQAMNVSPVGHLDPAFLALMDEIQSLLRYVWQT 66 (377)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCCCTTSHHHHHHHHHHHHHHHHHHTC
T ss_pred CcceeecCCCCCCCHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 345788899999999999999887777765554443 34455555554
No 6
>d2gf5a2 a.77.1.4 (A:2-83) FADD (Mort1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.80 E-value=1.4e+02 Score=16.79 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=19.2
Q ss_pred CCCccchHHHHHHHhhccchhhhhh
Q 034107 13 NSGEVGFLAKVTRRVSDTPIVAYTK 37 (103)
Q Consensus 13 ~~~~~~~~~~~l~~~~~~~i~~~~~ 37 (103)
++++-++...+|.+|.|..+++...
T Consensus 55 ~~~nl~~L~~lL~~i~R~DL~~~i~ 79 (82)
T d2gf5a2 55 EPGHTELLRELLASLRRHDLLRRVD 79 (82)
T ss_dssp CSSCCHHHHHHHHHTCCHHHHHHHH
T ss_pred CCccHHHHHHHHHHcChHHHHHHHH
Confidence 3667778899999999887776643
No 7
>d1d8wa_ c.1.15.2 (A:) L-rhamnose isomerase {Escherichia coli [TaxId: 562]}
Probab=5.24 E-value=1.4e+02 Score=22.83 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=26.7
Q ss_pred cceehhhhHHHHHHHHHHHHHHhhHhhHHHHHH
Q 034107 55 GKAAWIAGTTFLILVVPLIIEMDREQQFNELEM 87 (103)
Q Consensus 55 Gka~WIv~TSaLiL~vPli~e~erEqQl~EmE~ 87 (103)
+=.+||+++-.+.-.+--++-+++++ |.+.|.
T Consensus 332 rI~a~v~g~rn~qka~l~ALL~p~~~-L~~~q~ 363 (416)
T d1d8wa_ 332 RIAAWVIGTRNMKKALLRALLEPTAE-LRKLEA 363 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCHHH-HHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 44689999999999999999888888 777664
No 8
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.45 E-value=68 Score=23.62 Aligned_cols=19 Identities=26% Similarity=0.546 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHhhHh
Q 034107 62 GTTFLILVVPLIIEMDREQ 80 (103)
Q Consensus 62 ~TSaLiL~vPli~e~erEq 80 (103)
+||-|+.++|.+|++.++.
T Consensus 79 GTTtLL~~l~~ll~la~~~ 97 (325)
T d1jl0a_ 79 GTTLLLKALVPLLKLARDY 97 (325)
T ss_dssp TTCCGGGGHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHh
Confidence 7889999999999987764
No 9
>d2bu3a1 d.3.1.14 (A:29-238) Primitive phytochelatin synthase {Nostoc sp. pcc 7120 [TaxId: 103690]}
Probab=4.44 E-value=70 Score=21.87 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=18.2
Q ss_pred CCCccccccccCCCCccchHHHHH
Q 034107 1 MSSGQGKKRLTNNSGEVGFLAKVT 24 (103)
Q Consensus 1 ~~~~~~~k~l~~~~~~~~~~~~~l 24 (103)
.+|.+||+.|..+...+++++.+-
T Consensus 8 ~~S~eG~~ll~~~~~~~~~~~L~~ 31 (210)
T d2bu3a1 8 FNSNEGEKLLLTSRSREDFFPLSM 31 (210)
T ss_dssp TTSHHHHHHHHHCSBCTTHHHHHH
T ss_pred ccCHHHHHHHHhCccchhHHHHHH
Confidence 368899999988877777766443
No 10
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=4.06 E-value=1.2e+02 Score=15.48 Aligned_cols=12 Identities=42% Similarity=0.830 Sum_probs=8.3
Q ss_pred HHHHHhhccchh
Q 034107 22 KVTRRVSDTPIV 33 (103)
Q Consensus 22 ~~l~~~~~~~i~ 33 (103)
.+|.||..+||+
T Consensus 24 ellrrivdspiy 35 (36)
T d1kcfa1 24 ELLRRIVDSPIY 35 (36)
T ss_dssp HHHHHHHHCCCC
T ss_pred HHHHHHhcCCCC
Confidence 456777777775
Done!