Query 034108
Match_columns 103
No_of_seqs 100 out of 179
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 16:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034108.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034108hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ho8_A Vacuolar ATP synthase s 100.0 3.8E-45 1.3E-49 304.1 4.5 95 1-95 375-478 (480)
2 1jdh_A Beta-catenin; beta-cate 98.0 5E-06 1.7E-10 64.4 5.3 79 9-91 450-528 (529)
3 4db6_A Armadillo repeat protei 97.8 4E-05 1.4E-09 52.9 5.6 71 21-92 138-208 (210)
4 4db6_A Armadillo repeat protei 97.7 5.5E-05 1.9E-09 52.2 4.9 77 18-95 9-85 (210)
5 4hxt_A De novo protein OR329; 97.7 5.7E-05 1.9E-09 52.6 5.0 74 21-95 170-243 (252)
6 2z6g_A B-catenin; FULL-length, 97.6 8.8E-05 3E-09 62.8 6.1 72 22-95 594-665 (780)
7 4db8_A Armadillo-repeat protei 97.5 5.1E-05 1.7E-09 53.6 2.8 71 21-92 180-250 (252)
8 4hxt_A De novo protein OR329; 97.4 0.00029 9.9E-09 49.0 5.5 73 22-95 3-75 (252)
9 4db8_A Armadillo-repeat protei 97.3 0.00034 1.2E-08 49.3 5.3 74 21-95 54-127 (252)
10 1xm9_A Plakophilin 1; armadill 97.1 0.00049 1.7E-08 54.5 5.1 77 19-95 281-362 (457)
11 4b8j_A Importin subunit alpha- 97.1 0.00077 2.6E-08 52.9 5.6 73 21-94 414-497 (528)
12 2z6h_A Catenin beta-1, beta-ca 97.1 0.00065 2.2E-08 55.4 5.4 73 21-95 457-529 (644)
13 1xqr_A HSPBP1 protein; armadil 97.1 0.00073 2.5E-08 51.8 5.3 75 21-95 124-198 (296)
14 1xqr_A HSPBP1 protein; armadil 97.0 0.0018 6.2E-08 49.6 7.0 73 22-95 168-240 (296)
15 3tt9_A Plakophilin-2; cell adh 96.9 0.0018 6.3E-08 48.6 6.0 71 23-94 10-82 (233)
16 3ul1_B Importin subunit alpha- 96.8 0.002 7E-08 51.4 5.8 74 22-95 101-174 (510)
17 2jdq_A Importin alpha-1 subuni 96.6 0.002 6.7E-08 48.6 4.6 74 21-95 234-307 (450)
18 3tpo_A Importin subunit alpha- 96.6 0.0034 1.2E-07 50.2 5.8 74 22-95 120-193 (529)
19 1wa5_B Importin alpha subunit; 96.6 0.0038 1.3E-07 49.2 6.1 74 21-95 428-512 (530)
20 1xm9_A Plakophilin 1; armadill 96.5 0.0037 1.3E-07 49.4 5.5 72 23-95 4-75 (457)
21 2jdq_A Importin alpha-1 subuni 96.5 0.0047 1.6E-07 46.5 5.7 75 21-95 64-138 (450)
22 3tpo_A Importin subunit alpha- 96.5 0.0037 1.3E-07 49.9 5.4 74 21-95 251-324 (529)
23 1jdh_A Beta-catenin; beta-cate 96.4 0.0037 1.3E-07 48.2 4.7 74 20-94 265-340 (529)
24 4b8j_A Importin subunit alpha- 96.4 0.0039 1.3E-07 48.9 4.9 75 21-95 117-191 (528)
25 3ul1_B Importin subunit alpha- 96.4 0.0042 1.4E-07 49.6 5.2 75 20-95 231-305 (510)
26 1wa5_B Importin alpha subunit; 96.2 0.0065 2.2E-07 47.9 5.1 74 21-95 257-330 (530)
27 3nmz_A APC variant protein; pr 96.1 0.0093 3.2E-07 48.5 6.1 73 22-95 380-452 (458)
28 2z6h_A Catenin beta-1, beta-ca 95.8 0.0084 2.9E-07 48.8 4.3 74 20-94 262-337 (644)
29 3nmw_A APC variant protein; AR 95.8 0.016 5.4E-07 45.3 5.7 74 21-95 263-336 (354)
30 3l6x_A Catenin delta-1; cateni 95.6 0.017 5.8E-07 48.7 5.6 71 23-94 50-120 (584)
31 2z6g_A B-catenin; FULL-length, 95.0 0.074 2.5E-06 45.0 7.6 72 21-93 234-305 (780)
32 3tt9_A Plakophilin-2; cell adh 94.8 0.059 2E-06 40.3 5.9 73 22-95 53-126 (233)
33 3now_A UNC-45 protein, SD10334 94.6 0.068 2.3E-06 46.7 6.7 83 11-95 656-739 (810)
34 3nmw_A APC variant protein; AR 93.3 0.23 8E-06 38.6 6.8 74 21-94 214-293 (354)
35 1w63_A Adapter-related protein 93.3 0.18 6.3E-06 41.3 6.4 68 22-95 314-381 (618)
36 3now_A UNC-45 protein, SD10334 93.1 0.093 3.2E-06 45.9 4.6 77 20-96 579-655 (810)
37 2vgl_B AP-2 complex subunit be 92.4 0.15 5E-06 41.5 4.6 68 24-95 124-191 (591)
38 2qk1_A Protein STU2; STU2P, XM 92.2 0.45 1.5E-05 34.9 6.8 71 21-92 146-219 (249)
39 3b2a_A TON_1937, putative unch 92.2 0.28 9.6E-06 38.3 5.8 87 6-95 17-106 (265)
40 1ibr_B P95, importin beta-1 su 91.9 0.29 9.9E-06 36.5 5.5 70 21-92 128-202 (462)
41 3ltm_A Alpha-REP4; protein eng 91.8 0.18 6E-06 34.6 3.9 28 65-92 82-109 (211)
42 3ltj_A Alpharep-4; protein eng 91.7 0.2 7E-06 34.0 4.1 27 65-91 77-103 (201)
43 3nmz_A APC variant protein; pr 91.7 0.24 8.1E-06 40.2 5.1 72 21-93 243-316 (458)
44 2qk2_A LP04448P; mini spindles 91.7 0.37 1.3E-05 34.1 5.6 71 21-94 133-206 (242)
45 3ltm_A Alpha-REP4; protein eng 91.6 0.19 6.4E-06 34.4 3.9 27 65-91 113-139 (211)
46 3ltj_A Alpharep-4; protein eng 91.6 0.26 9E-06 33.4 4.6 65 16-92 9-73 (201)
47 4ffb_C Protein STU2; tubulin f 91.2 0.14 4.8E-06 37.4 3.0 69 21-92 139-211 (278)
48 2vgl_B AP-2 complex subunit be 90.9 0.13 4.3E-06 41.8 2.7 69 21-95 427-495 (591)
49 1oyz_A Hypothetical protein YI 90.5 0.31 1E-05 34.8 4.2 25 67-91 162-186 (280)
50 3l6x_A Catenin delta-1; cateni 90.4 0.57 1.9E-05 39.4 6.4 80 21-100 395-483 (584)
51 1oyz_A Hypothetical protein YI 89.7 0.36 1.2E-05 34.4 4.1 28 65-92 193-220 (280)
52 2qk1_A Protein STU2; STU2P, XM 89.6 0.56 1.9E-05 34.4 5.1 74 20-95 59-135 (249)
53 2qk2_A LP04448P; mini spindles 89.5 0.93 3.2E-05 31.9 6.0 72 20-93 55-127 (242)
54 1te4_A Conserved protein MTH18 89.5 0.18 6.3E-06 32.7 2.1 25 67-91 76-100 (131)
55 2vgl_A Adaptor protein complex 88.9 0.62 2.1E-05 38.6 5.4 70 21-94 329-399 (621)
56 1b3u_A Protein (protein phosph 88.6 0.73 2.5E-05 35.4 5.4 68 21-92 164-231 (588)
57 1te4_A Conserved protein MTH18 88.4 0.17 5.8E-06 32.8 1.4 26 65-90 105-130 (131)
58 2of3_A ZYG-9; multifunctional 87.6 0.69 2.3E-05 35.4 4.6 68 22-92 168-235 (266)
59 4gmo_A Putative uncharacterize 87.0 0.5 1.7E-05 39.5 3.7 67 26-94 39-106 (684)
60 1b3u_A Protein (protein phosph 86.8 0.85 2.9E-05 35.1 4.7 66 22-91 520-585 (588)
61 1ibr_B P95, importin beta-1 su 86.7 1.7 5.8E-05 32.3 6.2 73 15-93 83-159 (462)
62 2i9c_A Hypothetical protein RP 85.3 0.39 1.3E-05 33.5 1.9 48 38-85 26-78 (123)
63 1w63_A Adapter-related protein 85.2 1.2 4.2E-05 36.4 5.2 63 25-95 111-173 (618)
64 3opb_A SWI5-dependent HO expre 85.0 1.1 3.7E-05 39.3 4.9 73 21-95 457-532 (778)
65 2bpt_A Importin beta-1 subunit 84.1 2.3 7.8E-05 34.5 6.2 70 21-92 134-209 (861)
66 2ibj_A Cytochrome B5, CYTB5; F 83.2 0.35 1.2E-05 30.9 0.9 43 34-76 20-66 (88)
67 4fdd_A Transportin-1; heat rep 82.9 2.4 8.1E-05 35.2 6.0 69 21-92 215-284 (852)
68 4fdd_A Transportin-1; heat rep 81.0 0.99 3.4E-05 37.5 3.0 72 20-94 399-472 (852)
69 1hko_A Cytochrome B5; electron 79.9 0.78 2.7E-05 30.5 1.7 44 33-76 21-68 (104)
70 2vgl_A Adaptor protein complex 79.6 2.9 0.0001 34.5 5.4 71 18-95 104-179 (621)
71 1u6g_C TIP120 protein, CAND1; 77.6 1.8 6.2E-05 37.5 3.7 72 21-94 133-205 (1230)
72 1qgr_A Protein (importin beta 77.5 4 0.00014 33.1 5.5 71 21-93 128-203 (876)
73 1cyo_A Cytochrome B5; electron 75.8 0.68 2.3E-05 30.0 0.4 43 34-76 18-64 (93)
74 1u6g_C TIP120 protein, CAND1; 75.7 4.1 0.00014 35.2 5.4 68 21-93 48-115 (1230)
75 3ner_A Cytochrome B5 type B; h 75.0 0.83 2.8E-05 29.6 0.7 44 34-77 23-70 (92)
76 3lf5_A Cytochrome B5 reductase 74.4 0.46 1.6E-05 30.6 -0.7 42 34-75 19-64 (88)
77 3opb_A SWI5-dependent HO expre 74.3 2.5 8.7E-05 37.0 3.7 71 22-93 655-728 (778)
78 1qgr_A Protein (importin beta 74.3 5.7 0.0002 32.2 5.6 70 21-94 408-480 (876)
79 2keo_A Probable E3 ubiquitin-p 73.5 0.66 2.2E-05 31.4 -0.1 42 35-76 38-83 (112)
80 1dvp_A HRS, hepatocyte growth 72.7 11 0.00039 27.1 6.5 71 20-93 41-115 (220)
81 1cxy_A Cytochrome B5; helix, b 71.7 0.38 1.3E-05 30.9 -1.6 53 34-91 21-81 (90)
82 3grl_A General vesicular trans 71.6 11 0.00038 32.4 7.1 83 11-95 113-197 (651)
83 1mhq_A ADP-ribosylation factor 71.2 15 0.00052 25.3 6.6 70 20-92 37-115 (148)
84 1x3x_A Cytochrome B5; hemoprot 71.2 0.68 2.3E-05 29.2 -0.4 32 34-66 17-50 (82)
85 1x5b_A Signal transducing adap 66.6 21 0.00072 24.9 6.6 70 21-93 52-125 (163)
86 1juq_A ADP-ribosylation factor 66.2 20 0.00068 25.3 6.4 69 21-92 50-127 (171)
87 3g2s_A C-terminal fragment of 65.8 20 0.0007 24.8 6.3 69 21-92 48-125 (149)
88 3o2t_A Symplekin; heat repeat, 65.2 23 0.00078 28.4 7.3 73 20-93 99-183 (386)
89 1mj4_A Sulfite oxidase; cytoch 65.1 1.1 3.8E-05 28.2 -0.4 33 35-67 20-54 (82)
90 1elk_A Target of MYB1; superhe 65.0 26 0.00089 24.2 6.8 70 22-93 54-130 (157)
91 2bpt_A Importin beta-1 subunit 63.5 18 0.00063 29.1 6.4 72 21-94 224-296 (861)
92 3gs3_A Symplekin, LD45768P; he 61.0 7.5 0.00026 29.4 3.5 37 57-93 136-173 (257)
93 3ldz_A STAM-1, signal transduc 60.3 23 0.00078 24.0 5.7 69 21-92 42-113 (140)
94 2k5e_A Uncharacterized protein 60.0 5.2 0.00018 24.7 2.1 19 46-64 11-29 (73)
95 2fi0_A Conserved domain protei 58.9 5.2 0.00018 24.9 2.0 19 46-64 15-33 (81)
96 3grl_A General vesicular trans 53.8 21 0.00071 30.8 5.4 76 21-96 311-397 (651)
97 2bz1_A GTP cyclohydrolase II; 52.8 2.5 8.5E-05 31.1 -0.3 34 50-87 127-160 (196)
98 1vdy_A Hypothetical protein (R 50.7 20 0.00069 24.9 4.1 58 32-95 20-80 (140)
99 2k53_A A3DK08 protein; NESG, C 49.7 11 0.00039 23.3 2.5 19 46-64 9-27 (76)
100 1x5b_A Signal transducing adap 49.6 40 0.0014 23.4 5.6 45 45-94 38-82 (163)
101 1juq_A ADP-ribosylation factor 48.4 39 0.0013 23.7 5.4 45 45-94 36-80 (171)
102 3dad_A FH1/FH2 domain-containi 47.6 54 0.0018 26.0 6.6 76 19-95 200-288 (339)
103 3u0r_A Apoptosis inhibitor 5; 46.7 24 0.00083 29.6 4.6 56 34-94 40-95 (507)
104 3zyq_A Hepatocyte growth facto 45.7 53 0.0018 23.8 6.0 70 20-92 44-117 (226)
105 1kbi_A Cytochrome B2, L-LCR; f 45.6 8 0.00027 31.8 1.6 44 34-78 22-69 (511)
106 3dad_A FH1/FH2 domain-containi 45.1 27 0.00091 27.8 4.5 31 64-94 160-190 (339)
107 3c98_A Syntaxin-binding protei 43.6 11 0.00037 31.0 2.1 59 3-61 295-354 (606)
108 2xhe_A UNC18; exocytosis, exoc 43.5 9.9 0.00034 31.7 1.8 71 3-73 277-358 (650)
109 3rru_A TOM1L1 protein; structu 41.5 74 0.0025 22.0 5.9 72 20-93 52-130 (152)
110 1mhq_A ADP-ribosylation factor 40.0 61 0.0021 22.1 5.3 44 45-94 24-68 (148)
111 3tjz_B Coatomer subunit gamma; 39.9 23 0.00078 27.8 3.3 29 67-95 142-170 (355)
112 1zl8_A LIN-7; heterodimer, alp 38.7 11 0.00038 22.6 1.1 34 68-102 11-46 (53)
113 1epu_A S-SEC1; parallel beta-s 38.0 11 0.00038 30.8 1.3 58 3-60 280-339 (591)
114 3zyq_A Hepatocyte growth facto 35.9 37 0.0013 24.7 3.8 22 73-94 54-75 (226)
115 4ffb_C Protein STU2; tubulin f 35.8 95 0.0033 22.0 5.9 28 67-94 142-169 (278)
116 3mfq_A TROA, high-affinity zin 34.3 41 0.0014 25.0 3.9 49 5-53 131-180 (282)
117 2db0_A 253AA long hypothetical 33.6 45 0.0015 25.5 3.9 74 19-98 101-179 (253)
118 1wa5_C Importin alpha RE-expor 33.0 58 0.002 27.6 4.9 55 35-93 471-525 (960)
119 3b2a_A TON_1937, putative unch 32.6 44 0.0015 25.9 3.8 28 67-94 36-63 (265)
120 3m1i_C Exportin-1; heat repeat 32.5 25 0.00086 30.2 2.7 52 41-94 519-570 (1049)
121 3tjz_B Coatomer subunit gamma; 31.9 71 0.0024 25.0 5.0 82 6-93 118-205 (355)
122 3gi1_A LBP, laminin-binding pr 31.5 48 0.0016 24.7 3.8 47 5-53 149-196 (286)
123 1toa_A Tromp-1, protein (perip 31.4 36 0.0012 25.9 3.1 49 5-53 165-214 (313)
124 1dvp_A HRS, hepatocyte growth 31.2 80 0.0027 22.5 4.9 23 72-94 50-72 (220)
125 3ecm_A High affinity CAMP-spec 30.9 16 0.00056 28.3 1.2 39 37-76 108-160 (338)
126 1sox_A Sulfite oxidase; oxidor 30.6 7.8 0.00027 31.7 -0.8 31 37-67 22-54 (466)
127 1ekj_A Beta-carbonic anhydrase 30.1 17 0.00059 26.5 1.1 36 10-45 19-54 (221)
128 3g2s_A C-terminal fragment of 30.0 1.1E+02 0.0037 21.0 5.2 22 73-94 57-78 (149)
129 3ldz_A STAM-1, signal transduc 28.4 1.1E+02 0.0039 20.4 5.0 22 73-94 51-72 (140)
130 2kvp_A Talin-1; VBS, vinculin, 27.4 66 0.0023 22.9 3.8 48 33-91 68-115 (165)
131 1j03_A Putative steroid bindin 26.3 22 0.00076 23.2 1.0 41 36-78 21-66 (102)
132 2r9g_A AAA ATPase, central reg 25.8 68 0.0023 23.8 3.7 69 21-95 48-121 (204)
133 2x19_B Importin-13; nuclear tr 25.7 58 0.002 27.1 3.7 85 3-102 54-144 (963)
134 3hh8_A Metal ABC transporter s 25.7 49 0.0017 24.8 2.9 49 5-53 151-200 (294)
135 2prs_A High-affinity zinc upta 25.6 53 0.0018 24.2 3.1 47 5-53 144-191 (284)
136 2x1g_F Cadmus; transport prote 24.6 57 0.0019 27.4 3.4 75 21-95 39-116 (971)
137 2b0h_A Talin-1; vinculin, heli 24.5 1.7E+02 0.0058 20.2 5.4 48 33-91 40-87 (137)
138 3gjx_A Exportin-1; transport, 24.2 51 0.0017 29.6 3.2 70 21-92 521-594 (1073)
139 1tbf_A CGMP-specific 3',5'-cyc 23.8 78 0.0027 24.7 3.9 36 38-75 135-184 (347)
140 2w3q_A Carbonic anhydrase 2; l 23.4 35 0.0012 25.4 1.7 16 30-45 59-74 (243)
141 1elk_A Target of MYB1; superhe 22.1 1.9E+02 0.0066 19.6 5.6 45 45-94 39-84 (157)
142 2our_A CAMP and CAMP-inhibited 22.1 29 0.001 26.9 1.1 35 38-75 112-160 (331)
143 1wjt_A Transcription elongatio 21.9 1.7E+02 0.0058 19.0 6.2 67 20-91 15-82 (103)
144 3qy1_A Carbonic anhydrase; str 21.8 39 0.0013 24.9 1.7 16 30-45 32-47 (223)
145 3bcz_A Protein MEMO1; alpha/be 21.4 50 0.0017 24.8 2.2 55 20-79 163-226 (293)
146 1z8m_A Conserved hypothetical 21.3 1.1E+02 0.0037 17.9 3.4 32 3-36 6-39 (88)
147 2fk8_A Methoxy mycolic acid sy 21.2 21 0.00073 25.8 0.1 47 4-51 60-106 (318)
148 4gmo_A Putative uncharacterize 20.6 57 0.0019 27.0 2.6 27 69-95 39-65 (684)
149 3g80_A Protein B2; RNA-binding 20.2 61 0.0021 21.4 2.2 42 47-91 27-74 (97)
No 1
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=100.00 E-value=3.8e-45 Score=304.07 Aligned_cols=95 Identities=26% Similarity=0.489 Sum_probs=92.6
Q ss_pred CCCChHHHHHcHHhhhhCcHHHHHHHHHHhcc---------CCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHh
Q 034108 1 MHKDPLFWRDNITNFEENDFQILRVLLTILDT---------SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK 71 (103)
Q Consensus 1 ~H~se~FW~ENa~kf~e~~~~llk~L~~lL~~---------s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~ 71 (103)
||+||+||+||+.||+||||+++|+|+++|++ |+||+++|||||||||||||||+||.+++++|||++||+
T Consensus 375 ~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~ 454 (480)
T 1ho8_A 375 PHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIME 454 (480)
T ss_dssp GGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHH
T ss_pred CccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHH
Confidence 69999999999999999999999999999974 569999999999999999999999999999999999999
Q ss_pred hhcCCCHHhHHHHHHHHHHHhcch
Q 034108 72 LMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 72 Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
||+|+||+||||||+|+||+|+|+
T Consensus 455 Lm~h~d~~Vr~~AL~avQklm~~~ 478 (480)
T 1ho8_A 455 LLNHSDSRVKYEALKATQAIIGYT 478 (480)
T ss_dssp HTSCSSHHHHHHHHHHHHHHHHHS
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999998
No 2
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.05 E-value=5e-06 Score=64.38 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=66.7
Q ss_pred HHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHH
Q 034108 9 RDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCI 88 (103)
Q Consensus 9 ~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~av 88 (103)
.+|...+.+. ..+..|+++|. +.++.+...|+..|+.+.. .|.++..+.+.|+.+.+++|+.|+|++|++.|..++
T Consensus 450 ~~~~~~l~~~--~~v~~l~~ll~-~~~~~v~~~a~~~l~~l~~-~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL 525 (529)
T 1jdh_A 450 VHNRIVIRGL--NTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525 (529)
T ss_dssp HHHHHHHHHT--TCHHHHHHGGG-CSCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHH
T ss_pred chHHHHHhcc--CCccHHHHHHc-CCchHHHHHHHHHHHHHhc-CHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHH
Confidence 4555555554 46789999995 5678888999999999885 588999999999999999999999999999999999
Q ss_pred HHH
Q 034108 89 QRL 91 (103)
Q Consensus 89 Qkl 91 (103)
+.|
T Consensus 526 ~~l 528 (529)
T 1jdh_A 526 FRM 528 (529)
T ss_dssp HHH
T ss_pred Hhc
Confidence 876
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.78 E-value=4e-05 Score=52.86 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=64.7
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
..+..|+++|. +.|+.+..-||.=|+.++...|..+..+.+.|+-..+.+++.++|++||.+|+.++..+-
T Consensus 138 ~~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 138 GALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp THHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 47889999995 568888999999999999988999999999999999999999999999999999998874
No 4
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=97.67 E-value=5.5e-05 Score=52.17 Aligned_cols=77 Identities=22% Similarity=0.217 Sum_probs=65.7
Q ss_pred CcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 18 NDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 18 ~~~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
........|..+| .|+|+.+..-||.-|+.+.+..|..+..+-+.|+=..++++|.++|++|+.+|+.++..+..++
T Consensus 9 ~~~~~~~~l~~LL-~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 9 HHGSELPQMVQQL-NSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85 (210)
T ss_dssp ----CHHHHHHHT-TCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cccchhHHHHHHh-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 3445566888888 5778999999999999999999999988888899999999999999999999999999997544
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.67 E-value=5.7e-05 Score=52.59 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=67.5
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|+++|. +.|+.+..-||.=|+.++...|..+..+.+.|+-..+++++.++|++||.+|+.++..+....
T Consensus 170 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 170 GGVEVLVKLLT-STDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp THHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 47889999995 678888889999999999989999989988999999999999999999999999999998766
No 6
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.60 E-value=8.8e-05 Score=62.85 Aligned_cols=72 Identities=15% Similarity=0.117 Sum_probs=65.1
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|+++|. +.++.+...|+.-|+.++ ..|.++..+.+.|+...+++|+.|+|++||+.|+.|+..+..+.
T Consensus 594 ~i~~Lv~lL~-~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~ 665 (780)
T 2z6g_A 594 TIPLFVQLLY-SPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 665 (780)
T ss_dssp CHHHHHHGGG-CSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHc-CCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 5789999995 678888999999999987 45889999999999999999999999999999999999998765
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.50 E-value=5.1e-05 Score=53.59 Aligned_cols=71 Identities=25% Similarity=0.329 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
.++..|+++|. +.|+.+..-||.=|+.++...|.++..+.+.|+-..+++++.++|++||.+|..++..+.
T Consensus 180 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 180 GALPALVQLLS-SPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp TCHHHHHHGGG-CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred CCHHHHHHHHC-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 46789999995 568888899999999999999999999888999999999999999999999999998764
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=97.38 E-value=0.00029 Score=48.95 Aligned_cols=73 Identities=22% Similarity=0.276 Sum_probs=65.2
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|+++|. ++|+.+..-||.=|+.+....|+.+..+-+.|+=..+++++.++|++|+.+|+.++..+..++
T Consensus 3 ~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 75 (252)
T 4hxt_A 3 DVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP 75 (252)
T ss_dssp HHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred cHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 4678999995 567888889999999999999988888888899999999999999999999999999998763
No 9
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=97.32 E-value=0.00034 Score=49.30 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|+++|. +.++.+..-||.=|+.+....|..+..+-+.|+=..++.++.++|++|+..|+.++..+-.+.
T Consensus 54 g~i~~L~~lL~-~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~ 127 (252)
T 4db8_A 54 GALPALVQLLS-SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 127 (252)
T ss_dssp THHHHHHHGGG-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCC
Confidence 46788999995 556888888999999999989999999999999999999999999999999999999887654
No 10
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=97.15 E-value=0.00049 Score=54.51 Aligned_cols=77 Identities=14% Similarity=0.202 Sum_probs=65.3
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccc-----hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034108 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-----GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~-----gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
+...++.|+.+|..++++.++.-||--|+.+++..+. ++.++.+.|+-..+++|+.++|++|+++|.-+++.+-.
T Consensus 281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~ 360 (457)
T 1xm9_A 281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR 360 (457)
T ss_dssp SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence 4577999999998888899999999999999875432 25677778999999999999999999999999998865
Q ss_pred ch
Q 034108 94 GA 95 (103)
Q Consensus 94 ~~ 95 (103)
+.
T Consensus 361 ~~ 362 (457)
T 1xm9_A 361 HP 362 (457)
T ss_dssp SG
T ss_pred CH
Confidence 44
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.08 E-value=0.00077 Score=52.93 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccc-----------hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-----------GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ 89 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~-----------gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 89 (103)
.++..|+++|. +.|+.+..+|+.=|+.+++..+. ....+++.|+-+++..|+.|+|++|+..|...++
T Consensus 414 ~~i~~L~~lL~-~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~ 492 (528)
T 4b8j_A 414 GCIKPLCDLLI-CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILE 492 (528)
T ss_dssp TCHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 46888999995 57888899999999999998765 6778899999999999999999999999999999
Q ss_pred HHhcc
Q 034108 90 RLFLG 94 (103)
Q Consensus 90 klm~~ 94 (103)
++...
T Consensus 493 ~~~~~ 497 (528)
T 4b8j_A 493 AYWMD 497 (528)
T ss_dssp HHCC-
T ss_pred HHCCC
Confidence 98754
No 12
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=97.08 E-value=0.00065 Score=55.37 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|+++|. +.++.+...|+.-|+.+.+ .|.++..+.+.|+-..+.+|+.|+|++||..|..++..+..+.
T Consensus 457 ~~i~~Lv~lL~-~~~~~v~~~a~~aL~~l~~-~~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~aL~~l~~~~ 529 (644)
T 2z6h_A 457 NTIPLFVQLLY-SPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDK 529 (644)
T ss_dssp TCHHHHHHHTT-CSCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTTS
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 45788999994 6677888889988999886 4889999999999999999999999999999999999988655
No 13
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.07 E-value=0.00073 Score=51.84 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=65.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|+++|+.+.++.+..-|+.=|+.+++.+|.+...+.+.|+=..+..++.++|++|+.+|..++..+..++
T Consensus 124 g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~ 198 (296)
T 1xqr_A 124 GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH 198 (296)
T ss_dssp THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 467899999975557788888999999999999998877777899999999999999999999999999987654
No 14
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.01 E-value=0.0018 Score=49.65 Aligned_cols=73 Identities=14% Similarity=0.210 Sum_probs=66.4
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|+.+|. +.|+.+..-||.=|+.++...|+-+..+-+.|+=..+..||.++|++|+..|+.|+..++...
T Consensus 168 gi~~L~~lL~-~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~ 240 (296)
T 1xqr_A 168 GFSVLMRAMQ-QQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHH-SSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC
Confidence 6788999995 678999999999999999999988888888899999999999999999999999999988664
No 15
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=96.89 E-value=0.0018 Score=48.55 Aligned_cols=71 Identities=14% Similarity=0.242 Sum_probs=61.4
Q ss_pred HHHHHHHhccCCCc--ceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 23 LRVLLTILDTSSDP--RALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 23 lk~L~~lL~~s~d~--~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+..|+++|. |.|+ .+..-|+--|..+....|.-|..+-+.|+=..+.+||.+++++|+.+|.-|+.-|-..
T Consensus 10 i~~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~ 82 (233)
T 3tt9_A 10 LERAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE 82 (233)
T ss_dssp HHHHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 567899995 6666 6666777789999988888898888889999999999999999999999999998764
No 16
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.79 E-value=0.002 Score=51.42 Aligned_cols=74 Identities=9% Similarity=0.139 Sum_probs=64.2
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
++-.|+++|+.+++|.+..-||-=|+.++..-|+-+..+-+.|+=..+.+|+.+++++||.+|+.|+..+-.++
T Consensus 101 ~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC
Confidence 46689999976777777767888888888888888888888899999999999999999999999999988765
No 17
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.65 E-value=0.002 Score=48.58 Aligned_cols=74 Identities=15% Similarity=0.239 Sum_probs=63.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++..|+++|. +.|+.+..-||.=||.++...|..+..+-+.|+=..++.++++++++||.+|+.++..+...+
T Consensus 234 ~~i~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~ 307 (450)
T 2jdq_A 234 GVCRRLVELLM-HNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN 307 (450)
T ss_dssp TTHHHHHHHTT-CSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC
T ss_pred CcHHHHHHHHC-CCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 36788999995 668888888999999999888877776666799999999999999999999999999988543
No 18
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.59 E-value=0.0034 Score=50.17 Aligned_cols=74 Identities=9% Similarity=0.141 Sum_probs=62.0
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
++-.|+++|..+++|.+..-||.=|+.++..-|+-+..+-+.|+-..+..|+.+++++|+.+|+.|+..|..++
T Consensus 120 ~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~ 193 (529)
T 3tpo_A 120 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAG 193 (529)
T ss_dssp HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccC
Confidence 56678888876667776666777788888888877777777899999999999999999999999999998765
No 19
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.59 E-value=0.0038 Score=49.20 Aligned_cols=74 Identities=18% Similarity=0.266 Sum_probs=62.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccc-----------hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-----------GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ 89 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~-----------gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 89 (103)
.++..|+.+|. +.|+.+...|+.=|+.+++..|. ....+.+.|+..++..|.+|+|++|+..|..++.
T Consensus 428 ~~l~~L~~ll~-~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~ 506 (530)
T 1wa5_B 428 GCIKPLCDLLE-IADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506 (530)
T ss_dssp TCHHHHHHHTT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHh-CCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 47889999995 56888888899889999887764 3456778899999999999999999999999999
Q ss_pred HHhcch
Q 034108 90 RLFLGA 95 (103)
Q Consensus 90 klm~~~ 95 (103)
++....
T Consensus 507 ~~~~~~ 512 (530)
T 1wa5_B 507 TYFGEE 512 (530)
T ss_dssp HHSSSC
T ss_pred HHCCcc
Confidence 887543
No 20
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=96.50 E-value=0.0037 Score=49.44 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=63.1
Q ss_pred HHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+..|+++|. |.|+.+..-|+--|+.+....|+-|..+-+.|+=..+.+++.+++++++.+|..|+..|-..+
T Consensus 4 l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~ 75 (457)
T 1xm9_A 4 IPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75 (457)
T ss_dssp HHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 567889995 668888888999999999888888867778899999999999999999999999999998763
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.48 E-value=0.0047 Score=46.50 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=61.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++..|+++|..++|+.+..-||.=|+.+....|+....+-+-|+=..+.+++.++|++||.+|+.++..+....
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~ 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS 138 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC
Confidence 578888899965547777777888888888877766665556789999999999999999999999999988654
No 22
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.48 E-value=0.0037 Score=49.90 Aligned_cols=74 Identities=24% Similarity=0.380 Sum_probs=64.6
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++..|+++| .+.|+.++.-||.=|+.+....++-...+..-|+-.++++|+.++++.|+..|+.|+..+..++
T Consensus 251 ~~lp~L~~LL-~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~ 324 (529)
T 3tpo_A 251 QILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 324 (529)
T ss_dssp HHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHh-cCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccc
Confidence 4677888888 4778888888999999999887777777778899999999999999999999999999987655
No 23
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=96.39 E-value=0.0037 Score=48.17 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=64.8
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcC--CCHHhHHHHHHHHHHHhcc
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH--ENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm~~ 94 (103)
-..+..|+++| .+.|+.+..-||.-|+.+....|..+..+-+.|+-..+++++.+ ++++|+..|+.++..+..+
T Consensus 265 ~~~i~~L~~ll-~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~ 340 (529)
T 1jdh_A 265 EGLLGTLVQLL-GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 340 (529)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred HhHHHHHHHHH-cCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence 36788899999 46788889999999999999988899999999999999999976 3489999999999988754
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.38 E-value=0.0039 Score=48.88 Aligned_cols=75 Identities=15% Similarity=0.195 Sum_probs=64.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++..|+++|..++++.+..-||.=|+.+....|+.+..+-+.|+=..++.++.+++++||.+|+.++..+....
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~ 191 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDS 191 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC
Confidence 467889999965545888888899999999988888888888899999999999999999999999999987554
No 25
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.37 E-value=0.0042 Score=49.57 Aligned_cols=75 Identities=24% Similarity=0.358 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..++..|+++| .+.|+.++.-||.=|+.+....++....+..-|+-.++++|+.++++.|+..|+.|+..+...+
T Consensus 231 ~~~lp~L~~LL-~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~ 305 (510)
T 3ul1_B 231 EQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGT 305 (510)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred HhHHHHHHHHH-hcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCC
Confidence 35677888888 4778888888999999999888888888888899999999999999999999999999887655
No 26
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.17 E-value=0.0065 Score=47.89 Aligned_cols=74 Identities=27% Similarity=0.400 Sum_probs=63.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++..|+++|. +.|+.+..-||.=|+.++...|.....+-+.|+=..++.+|.+++++|+..|+.++..+...+
T Consensus 257 ~~l~~L~~lL~-~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~ 330 (530)
T 1wa5_B 257 QALPTLAKLIY-SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN 330 (530)
T ss_dssp GGHHHHHHHTT-CCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC
Confidence 56788889984 568888888999999999888877777777799999999999999999999999999887554
No 27
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=96.14 E-value=0.0093 Score=48.51 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=64.7
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|+++|. +.++.+..-||-=|+.+....|+.+..+-+.|+=..+.+|+.+++++++.+|.-++.-|..++
T Consensus 380 ~i~~Lv~LL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 380 CLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHSS-CSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred cHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 4778999995 556667777888899998778899999989999999999999999999999999999999887
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=95.78 E-value=0.0084 Score=48.80 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCC-C-HHhHHHHHHHHHHHhcc
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE-N-TEVTKSALLCIQRLFLG 94 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~-d-~eVr~eAL~avQklm~~ 94 (103)
-.++..|+++|. +.|+.+..-||.-|+.+....|..+..+-+.|+-..+++++.+. + ++|+..|+.++..+..+
T Consensus 262 ~~~i~~Lv~lL~-~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 262 EGLLGTLVQLLG-SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred hhHHHHHHHHHc-CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence 367888999995 67888899999999999998888899888899999999999873 3 89999999999998754
No 29
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=95.78 E-value=0.016 Score=45.31 Aligned_cols=74 Identities=18% Similarity=0.248 Sum_probs=65.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..+..|+++|. +.++.+..-||-=|+.++...|+.+..+-+.|+=..+.+|+.++++++|.+|..++..|..++
T Consensus 263 g~i~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 263 NCLQTLLQHLK-SHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp THHHHHHHHTT-CSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHc-CCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 35889999995 556677777888888888778889999999999999999999999999999999999999776
No 30
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=95.59 E-value=0.017 Score=48.67 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=63.1
Q ss_pred HHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 23 LRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 23 lk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+..|+++|. |.|+.+..-|+--|..++...+..|..+-+.|+=..+.+||.+++++|+.+|.-|+..|-.+
T Consensus 50 i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~ 120 (584)
T 3l6x_A 50 LPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFG 120 (584)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHcc
Confidence 678899995 66787777788889999988888899999999999999999999999999999999999874
No 31
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.97 E-value=0.074 Score=44.97 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=64.5
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
..+..|+++|. +.++.+..-|+.=|+.++..+++.+..+.+.|+-..+.+++.+++++|+..|+.+++.|-.
T Consensus 234 g~I~~Lv~lL~-~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~ 305 (780)
T 2z6g_A 234 GGIPALVNMLG-SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY 305 (780)
T ss_dssp THHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHc-CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 57889999995 5678888899999999999999999999888999999999999999999999999887664
No 32
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=94.79 E-value=0.059 Score=40.25 Aligned_cols=73 Identities=15% Similarity=0.211 Sum_probs=63.2
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHHHHhcch
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|+++|. |.++.+..-||-=|+-+....|+.|..+-+-||=..+.+|+. +++++++.+|.-++.-|-.+.
T Consensus 53 ~Ip~LV~lL~-s~~~~vq~~Aa~aL~nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~ 126 (233)
T 3tt9_A 53 GILKLLQLLK-VQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126 (233)
T ss_dssp HHHHHHHGGG-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSG
T ss_pred CHHHHHHHHc-CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCh
Confidence 3678999995 678888899999999999888889999989999999999997 589999999998888776544
No 33
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=94.63 E-value=0.068 Score=46.71 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=67.1
Q ss_pred cHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccc-hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHH
Q 034108 11 NITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQ 89 (103)
Q Consensus 11 Na~kf~e~~~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~-gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 89 (103)
+..+|.+ +...++.|+.+|+ +.|+.+..-||-=|+.+....|. .+.+++.-|+-..+.+|+.++|++||++|+.|+.
T Consensus 656 ~~~~~v~-~~g~l~~Lv~LL~-s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~ 733 (810)
T 3now_A 656 VIKMFEG-NNDRVKFLALLCE-DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIIL 733 (810)
T ss_dssp HHHHHHS-SSSHHHHHHHGGG-CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHh-ccCcHHHHHHHhc-CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3445553 3468999999995 67888888899999999987775 5666664688889999999999999999999999
Q ss_pred HHhcch
Q 034108 90 RLFLGA 95 (103)
Q Consensus 90 klm~~~ 95 (103)
-+..++
T Consensus 734 NL~~~s 739 (810)
T 3now_A 734 NMINAG 739 (810)
T ss_dssp HHHTTC
T ss_pred HHHhCC
Confidence 998654
No 34
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=93.29 E-value=0.23 Score=38.64 Aligned_cols=74 Identities=12% Similarity=0.083 Sum_probs=56.6
Q ss_pred HHHHHHHHHhccCCCcc---eeehhcchHHHHHH---HccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 21 QILRVLLTILDTSSDPR---ALAVACFDLSQFIQ---YHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~---~laVac~Dige~vr---~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
..+..|+++|...++.. +..-||-=|..+.. -.|++|..+.+-|+=..+.+||.+++++++.+|.-|+..+-..
T Consensus 214 Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~ 293 (354)
T 3nmw_A 214 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR 293 (354)
T ss_dssp THHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred CcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCC
Confidence 46778999996444332 33334444444444 4788999999999999999999999999999999999998753
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=93.26 E-value=0.18 Score=41.34 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=54.5
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.+..|..+|. ++|+.+--+|+.=|+.+++.+|. ++.. ....|+.++.++|+.||..||.++.++....
T Consensus 314 a~~~L~~~L~-~~d~~vr~~aL~~L~~i~~~~p~---~~~~--~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~ 381 (618)
T 1w63_A 314 AINILGRFLL-NNDKNIRYVALTSLLKTVQTDHN---AVQR--HRSTIVDCLKDLDVSIKRRAMELSFALVNGN 381 (618)
T ss_dssp HHHHHHHHHT-CSSTTTHHHHHHHHHHHHHHHHH---HHGG--GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS
T ss_pred HHHHHHHHHh-CCCCchHHHHHHHHHHHHhhCHH---HHHH--HHHHHHHHccCCChhHHHHHHHHHHHHcccc
Confidence 4567777774 57888888899999999998874 3433 5678999999999999999999999887543
No 36
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.07 E-value=0.093 Score=45.86 Aligned_cols=77 Identities=13% Similarity=0.253 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcchh
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGAK 96 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~~ 96 (103)
.+.+..|+++|....+.....-||-=|+.+...-+..+..+-+-|+=.++.+||.|+++.|+..|+.|+..|+.+.+
T Consensus 579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~ 655 (810)
T 3now_A 579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSED 655 (810)
T ss_dssp HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHH
T ss_pred hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChH
Confidence 35789999999532232222346666777776666656555556899999999999999999999999999997763
No 37
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=92.36 E-value=0.15 Score=41.47 Aligned_cols=68 Identities=16% Similarity=0.202 Sum_probs=49.1
Q ss_pred HHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 24 RVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 24 k~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
..|.++|. +.+|.+-.-||.=++.+.+.+|+ ++.+-+.-..+.++++++|+.|+..|+.++..+..++
T Consensus 124 ~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 124 EPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcC-CCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhC
Confidence 33666663 56777777777777888777776 3333355678888888889999999999988877654
No 38
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.24 E-value=0.45 Score=34.89 Aligned_cols=71 Identities=11% Similarity=0.185 Sum_probs=53.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccch-hHHHHhh--ChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDL--KAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~g-k~i~~~l--g~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
.++..|...|+ +.+|.+-.-++.=|+.++...|.. ..+...+ ..=..++++|++++++||-.|..|+-.++
T Consensus 146 ~ll~~l~~~l~-~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 146 DMLKDILEHMK-HKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 57778888884 457877777888889999888653 3333333 35567889999999999999988877765
No 39
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=92.18 E-value=0.28 Score=38.26 Aligned_cols=87 Identities=17% Similarity=0.252 Sum_probs=67.8
Q ss_pred HHHH-HcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccc--hhHHHHhhChHHHHHhhhcCCCHHhHH
Q 034108 6 LFWR-DNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA--GRVIVTDLKAKERVMKLMNHENTEVTK 82 (103)
Q Consensus 6 ~FW~-ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~--gk~i~~~lg~K~~vM~Lm~h~d~eVr~ 82 (103)
++|+ --+..+-+.+-+.+-.|..+| ...|+.+..=|..=|++.++..|. .+.++++ .=+++.+++.++|+.|.-
T Consensus 17 ~sWkiK~a~ela~~~e~~l~~L~~LL-~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~--~Ld~iI~llk~~dEkval 93 (265)
T 3b2a_A 17 LSWQILDAVSLALEDKRALFLILELA-GEDDETTRLRAFVALGEILKRADSDLRMMVLER--HLDVFINALSQENEKVTI 93 (265)
T ss_dssp HTTCHHHHHHHHHHCHHHHHHHHHHT-TSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHH--HHHHHHHTCCSTTHHHHH
T ss_pred HHhhHHHHHHHHHhchhHHHHHHHHH-hccchHHHHHHHHHHHHHHHhccccccHHHHHH--HHHHHHHHHhccchhHHH
Confidence 3554 233334444556888999999 577888888899999999999874 4555555 458899999999999999
Q ss_pred HHHHHHHHHhcch
Q 034108 83 SALLCIQRLFLGA 95 (103)
Q Consensus 83 eAL~avQklm~~~ 95 (103)
.|+.|+-.++.+.
T Consensus 94 ~A~r~L~~LLe~v 106 (265)
T 3b2a_A 94 KALRALGYLVKDV 106 (265)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998765
No 40
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.92 E-value=0.29 Score=36.53 Aligned_cols=70 Identities=10% Similarity=0.092 Sum_probs=50.0
Q ss_pred HHHHHHHHHhccCC-CcceeehhcchHHHHHHHc-cch-hHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHHHh
Q 034108 21 QILRVLLTILDTSS-DPRALAVACFDLSQFIQYH-PAG-RVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~-d~~~laVac~Dige~vr~~-P~g-k~i~~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQklm 92 (103)
+++-.|++.+.+++ |+.+...|+.=++.+++.+ |.. ...+. ..-..++.+++++ +++||+.|+.|+..++
T Consensus 128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~ 202 (462)
T 1ibr_B 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN--EILTAIIQGMRKEEPSNNVKLAATNALLNSL 202 (462)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH--HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHH--HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 57778888885332 7777777888888888876 321 11122 2456678888888 8999999999998865
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.85 E-value=0.18 Score=34.56 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=20.5
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 65 AKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+-..+++++.++|++||..|+.++.++-
T Consensus 82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 109 (211)
T 3ltm_A 82 AVEPLIKALKDEDGWVRQSAAVALGQIG 109 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4466677777888888888888777664
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.71 E-value=0.2 Score=33.98 Aligned_cols=27 Identities=26% Similarity=0.379 Sum_probs=16.1
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034108 65 AKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+-..+.+++.++|+.||..|+.++..+
T Consensus 77 ~~~~L~~~l~d~~~~vr~~a~~aL~~~ 103 (201)
T 3ltj_A 77 AVEPLIKALKDEDGWVRQSAAVALGQI 103 (201)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 344555566666666666666666554
No 43
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=91.68 E-value=0.24 Score=40.19 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=59.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHH-ccchhHHHHhhChHHHHHhh-hcCCCHHhHHHHHHHHHHHhc
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQY-HPAGRVIVTDLKAKERVMKL-MNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~-~P~gk~i~~~lg~K~~vM~L-m~h~d~eVr~eAL~avQklm~ 93 (103)
..+..|+++|. |.|+.+..-||-=|+.+... .+..|..+-+.|+=..++++ +.+++++++..|+.|+.-|-.
T Consensus 243 GaIp~LV~LL~-s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~ 316 (458)
T 3nmz_A 243 GCMRALVAQLK-SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA 316 (458)
T ss_dssp HHHHHHHHGGG-CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHh-CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc
Confidence 35789999995 77888888888888887653 45678888888999999996 567899999999999988776
No 44
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.65 E-value=0.37 Score=34.08 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=51.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHc-cc--hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYH-PA--GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~-P~--gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.++-.|...|+ +.+|.+-.-++.=|+.++..+ |. +...+.. .=..++.++++++++||..|..|+..++..
T Consensus 133 ~ll~~l~~~l~-~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~--l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 133 AQQESIVESLS-NKNPSVKSETALFIARALTRTQPTALNKKLLKL--LTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp HHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH--HHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHHcCCCCccHHHHHH--HHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 45666667774 457777777788888877666 43 3344443 346788889999999999999999998743
No 45
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=91.64 E-value=0.19 Score=34.42 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=18.0
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034108 65 AKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+-..+.+++.++|++||..|+.++..+
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~ 139 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALGEI 139 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 445666666777777777777776665
No 46
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=91.57 E-value=0.26 Score=33.40 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=51.0
Q ss_pred hhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 16 EENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 16 ~e~~~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
...+......+++.| .+.|+.+-.-|+.-||.+-. -.+-..+++++.++|+.||..|+.++..+-
T Consensus 9 ~~~~~~~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~ 73 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNL-QDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG 73 (201)
T ss_dssp CCCCHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred cccCCcchHHHHHHh-cCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 445667788899999 56788888888888886531 134577888999999999999999998764
No 47
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=91.19 E-value=0.14 Score=37.42 Aligned_cols=69 Identities=16% Similarity=0.238 Sum_probs=43.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHh---h-ChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTD---L-KAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~---l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
.++..|...+ ++.+|.+.+-++.=|+..++.++ -..+.- + .+-..+..+++|+|++||-.|..++-.++
T Consensus 139 ~~~e~l~~~l-~~Knpkv~~~~l~~l~~~l~~fg--~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 139 QSVELVIPFF-EKKLPKLIAAAANCVYELMAAFG--LTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp HHHHHHGGGG-GCSCHHHHHHHHHHHHHHHHHHT--TTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHhC--CCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 3444444444 35677777777777888887763 222210 0 01124556789999999999999887665
No 48
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=90.90 E-value=0.13 Score=41.84 Aligned_cols=69 Identities=22% Similarity=0.342 Sum_probs=50.8
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++..|.+.|+...+|.+.++++.=||||....|+...+++.+ .+-+..++++||..+|.|+-|+..+.
T Consensus 427 ~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~~~~~l~~l------~~~~~~~~~~vr~~~l~a~~Kl~~~~ 495 (591)
T 2vgl_B 427 SIIATLCENLDSLDEPDARAAMIWIVGEYAERIDNADELLESF------LEGFHDESTQVQLTLLTAIVKLFLKK 495 (591)
T ss_dssp TTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTTHHHHHHHH------STTCSSSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHcccccccCHHHHHHHH------HHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 3456677777655677788888888999988887765555543 22344678999999999999998754
No 49
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=90.52 E-value=0.31 Score=34.80 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=13.5
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHH
Q 034108 67 ERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
..+.+++.++|++||+.|..++..+
T Consensus 162 ~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 162 PLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 3445555555555555555555444
No 50
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=90.40 E-value=0.57 Score=39.39 Aligned_cols=80 Identities=9% Similarity=0.104 Sum_probs=65.0
Q ss_pred HHHHHHHHHhccCC-C------cceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHHH
Q 034108 21 QILRVLLTILDTSS-D------PRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQRL 91 (103)
Q Consensus 21 ~llk~L~~lL~~s~-d------~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQkl 91 (103)
..+..|+++|..++ + ..+++=||.=|+.++-.-|.-+..+.+.|+=..+..|+.+. .+.++..|-.+++-|
T Consensus 395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI 474 (584)
T ss_dssp HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence 57789999996543 2 24556688889999988888888888999999999999875 899999999999999
Q ss_pred hcchhhhhh
Q 034108 92 FLGAKYTSF 100 (103)
Q Consensus 92 m~~~~~~~~ 100 (103)
..+++.-+.
T Consensus 475 ~~~~elr~~ 483 (584)
T 3l6x_A 475 WGYKELRKP 483 (584)
T ss_dssp HTSHHHHHH
T ss_pred HcCHHHHHH
Confidence 877754433
No 51
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=89.70 E-value=0.36 Score=34.40 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=21.2
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 65 AKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+-..+..++.++|++||..|+.++..+-
T Consensus 193 ~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 193 IRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3456677778888888888888887764
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=89.58 E-value=0.56 Score=34.35 Aligned_cols=74 Identities=11% Similarity=0.089 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHcc-ch-h-HHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHP-AG-R-VIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P-~g-k-~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.++++.|.+.|.+..++.+...||+=||++++... .+ . ..... .=..|++.+.+..+.|+-.|-.|+..++.+-
T Consensus 59 ~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~~--llp~ll~~l~dkk~~V~~aa~~al~~i~~~~ 135 (249)
T 2qk1_A 59 SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSL--VFTPLLDRTKEKKPSVIEAIRKALLTICKYY 135 (249)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHc
Confidence 68899999999555677888999999999998774 22 1 23222 2246778888889999999999999888654
No 53
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=89.46 E-value=0.93 Score=31.95 Aligned_cols=72 Identities=10% Similarity=0.102 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~g-k~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
.+++..|.++|.+..++.+..-||.=||.+++..+.. ...++. .=..+++.+.++++.||..|..|+..++.
T Consensus 55 ~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~~~--ilp~ll~~l~d~~~~vr~~a~~aL~~~~~ 127 (242)
T 2qk2_A 55 GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYASA--CVPSLLEKFKEKKPNVVTALREAIDAIYA 127 (242)
T ss_dssp HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4788889998853568888788899999998765221 011111 12334444555555555555555555543
No 54
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=89.45 E-value=0.18 Score=32.69 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=15.5
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHH
Q 034108 67 ERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
..+..++.++|+.||..|..++.++
T Consensus 76 ~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 76 EPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4455556666666666666666554
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=88.89 E-value=0.62 Score=38.55 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=55.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHHHHhcc
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~ 94 (103)
..+..|..+|. ++|+.+--+|+.=|..++..+|. ...+.. ....++..+. ++|+.||..||..+.++...
T Consensus 329 ~~~~~L~~~L~-~~~~niry~aL~~l~~l~~~~~~-~~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~ 399 (621)
T 2vgl_A 329 RACNQLGQFLQ-HRETNLRYLALESMCTLASSEFS-HEAVKT--HIETVINALKTERDVSVRQRAVDLLYAMCDR 399 (621)
T ss_dssp HHHHHHHHHSS-CSCHHHHHHHHHHHHHHTTCTTT-HHHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHhc-CCCcchHHHHHHHHHHHHhccCc-HHHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh
Confidence 34567777774 67888888999999999998875 234444 4678888888 99999999999999888743
No 56
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=88.64 E-value=0.73 Score=35.45 Aligned_cols=68 Identities=12% Similarity=0.122 Sum_probs=45.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
+++..|.+++ .++|+.+-.-|+.=||.+++..|.. .... ..-..++.++++++++||..|+.++..+.
T Consensus 164 ~l~~~l~~l~-~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~--~l~~~l~~~~~d~~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 164 ELRQYFRNLC-SDDTPMVRRAAASKLGEFAKVLELD-NVKS--EIIPMFSNLASDEQDSVRLLAVEACVNIA 231 (588)
T ss_dssp HHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHTSCHH-HHHH--THHHHHHHHHTCSCHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcHH-hHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 3445555555 3567777778888899998887532 1112 23345667778888888888888877765
No 57
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=88.40 E-value=0.17 Score=32.84 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=21.3
Q ss_pred hHHHHHhhhcCCCHHhHHHHHHHHHH
Q 034108 65 AKERVMKLMNHENTEVTKSALLCIQR 90 (103)
Q Consensus 65 ~K~~vM~Lm~h~d~eVr~eAL~avQk 90 (103)
+-..+.++++++|+.||..|..++.+
T Consensus 105 a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 105 VRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 34567788899999999999998754
No 58
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=87.57 E-value=0.69 Score=35.44 Aligned_cols=68 Identities=16% Similarity=0.268 Sum_probs=49.3
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
++..|.+-+ +|.++.+-+-.|.=|+.++..|.-. -..-+-...-|+.+++.+|++||-.|+.|+-.+.
T Consensus 168 v~~~l~~g~-ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y 235 (266)
T 2of3_A 168 MTPMLLDAL-KSKNARQRSECLLVIEYYITNAGIS--PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF 235 (266)
T ss_dssp HHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCCHHHHHHHHHHHHHHHHhcCCC--ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 455555555 5678888888889999999988433 1111222266999999999999999999986554
No 59
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=86.98 E-value=0.5 Score=39.45 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=52.6
Q ss_pred HHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChH-HHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 26 LLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAK-ERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 26 L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K-~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
|++.| .|.|+..-.-||.=|+.++. -|.-+..+.+-|+= ..|-.++.+++++||-+|.-|+.-|-..
T Consensus 39 ll~~L-~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~ 106 (684)
T 4gmo_A 39 VLKDL-KSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE 106 (684)
T ss_dssp HHHHH-SSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHc-CCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 34446 47889888999999999996 77777777776654 4566789999999999999888766543
No 60
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=86.76 E-value=0.85 Score=35.10 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=37.4
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
++..|.+.|. ..++.+-..+|.=+|.+++.. |...+.. .....+..|++.+|++||..|..|+..+
T Consensus 520 ~~~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~--~~~~~~~-~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 520 MLPTVLRMAG-DPVANVRFNVAKSLQKIGPIL--DNSTLQS-EVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp THHHHHHGGG-CSCHHHHHHHHHHHHHHGGGS--CHHHHHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhhCC-CCCchHHHHHHHHHHHHHHHh--chhhhHH-HHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 3334444442 344555556666667766665 3333321 2334455566777888888887777654
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=86.71 E-value=1.7 Score=32.26 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=51.4
Q ss_pred hhhCcHHHHH-HHHHHhccCCCcceeehhcchHHHHHHHc-cchhHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHH
Q 034108 15 FEENDFQILR-VLLTILDTSSDPRALAVACFDLSQFIQYH-PAGRVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQR 90 (103)
Q Consensus 15 f~e~~~~llk-~L~~lL~~s~d~~~laVac~Dige~vr~~-P~gk~i~~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQk 90 (103)
+.++..+.+| .|+..|. +.++.+ ..+|.=|+.++++. |++. . -+.=..+++.++++ |+++|..|+.++..
T Consensus 83 l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ia~~~~~~~~--w--~~ll~~L~~~l~~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLG-TETYRP-SSASQCVAGIACAEIPVNQ--W--PELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp SCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHHHHHHHGGGTC--C--TTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHHHHHHhccccc--c--HHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 4344444444 5788884 456677 88888899999884 6431 1 13445667778888 99999999999999
Q ss_pred Hhc
Q 034108 91 LFL 93 (103)
Q Consensus 91 lm~ 93 (103)
+..
T Consensus 157 l~~ 159 (462)
T 1ibr_B 157 ICQ 159 (462)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 62
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=85.28 E-value=0.39 Score=33.46 Aligned_cols=48 Identities=19% Similarity=0.186 Sum_probs=37.8
Q ss_pred eeehhcchHHHHHHHccchhHHHHhh----C-hHHHHHhhhcCCCHHhHHHHH
Q 034108 38 ALAVACFDLSQFIQYHPAGRVIVTDL----K-AKERVMKLMNHENTEVTKSAL 85 (103)
Q Consensus 38 ~laVac~Dige~vr~~P~gk~i~~~l----g-~K~~vM~Lm~h~d~eVr~eAL 85 (103)
.-|+--.|.+.|-|+|-.=..+...| | +..-++.|++|||+.||..|=
T Consensus 26 ~eA~~~~d~~~~Nr~~~kl~~~~~eLk~r~Gd~R~aLl~Ll~H~n~~VRl~AA 78 (123)
T 2i9c_A 26 DDALLGNQISRFNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAA 78 (123)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhCCCccHHHHHH
Confidence 35778899999999997655565554 4 566799999999999998763
No 63
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=85.23 E-value=1.2 Score=36.38 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=42.3
Q ss_pred HHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 25 VLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 25 ~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.|.+-| .+.||.+-+.|+.=||.+. +..+++. .-..|..++.|++|.||+.|..|+.++...+
T Consensus 111 ~l~kDL-~~~n~~vr~lAL~~L~~i~-----~~~~~~~--l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~ 173 (618)
T 1w63_A 111 CIKNDL-NHSTQFVQGLALCTLGCMG-----SSEMCRD--LAGEVEKLLKTSNSYLRKKAALCAVHVIRKV 173 (618)
T ss_dssp HHHHHH-SCSSSHHHHHHHHHHHHHC-----CHHHHHH--HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhc-CCCCHhHHHHHHHHHHhcC-----CHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC
Confidence 333334 3566666666766666664 2334443 3466788889999999999999999887543
No 64
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=84.97 E-value=1.1 Score=39.34 Aligned_cols=73 Identities=5% Similarity=0.056 Sum_probs=58.6
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHH---hHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTE---VTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~e---Vr~eAL~avQklm~~~ 95 (103)
.++..|+.++ +|.++.+..-|+-=|+.+... |.+|..+-+-||=..++.++.+..+. +|..|..|+.++....
T Consensus 457 GvIp~Lv~Ll-~S~s~~~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~ 532 (778)
T 3opb_A 457 ELISFLKREM-HNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFT 532 (778)
T ss_dssp THHHHHHHHG-GGSCHHHHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTS
T ss_pred cCHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcC
Confidence 4888899999 466788888888888888754 88999888889988899999876544 8999999999998543
No 65
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=84.11 E-value=2.3 Score=34.47 Aligned_cols=70 Identities=6% Similarity=0.073 Sum_probs=44.9
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccch----hHHHHhhChHHHHHhhhcCC--CHHhHHHHHHHHHHHh
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG----RVIVTDLKAKERVMKLMNHE--NTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~g----k~i~~~lg~K~~vM~Lm~h~--d~eVr~eAL~avQklm 92 (103)
+++..|.+.+.+++|+.+...|+.=++.+++.++.. ...+.. .-..++..+.++ +++||..|+.|+..++
T Consensus 134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~--ll~~l~~~l~~~~~~~~vr~~al~~l~~~~ 209 (861)
T 2bpt_A 134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNN--ILIAIVQGAQSTETSKAVRLAALNALADSL 209 (861)
T ss_dssp HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHH--HHHHHHHHHSTTCCCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHH--HHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 577777777743326666666666677777765422 111111 234456677887 8999999999998875
No 66
>2ibj_A Cytochrome B5, CYTB5; FLY cytochrome B5, X-RAY diffraction, heme, electron transport; HET: HEM; 1.55A {Musca domestica}
Probab=83.17 E-value=0.35 Score=30.86 Aligned_cols=43 Identities=19% Similarity=0.453 Sum_probs=32.3
Q ss_pred CCcceeehh--cchHHHHHHHccchhHHHHhhChH--HHHHhhhcCC
Q 034108 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 76 (103)
Q Consensus 34 ~d~~~laVa--c~Dige~vr~~P~gk~i~~~lg~K--~~vM~Lm~h~ 76 (103)
.++.+++|- .+|+..|+..||.|..++....|+ +..+.-..|+
T Consensus 20 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs 66 (88)
T 2ibj_A 20 KDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHS 66 (88)
T ss_dssp TTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTEECHHHHHHHTCC
T ss_pred CCCEEEEECCEEEECCcchhhCcCHHHHHHHhCCCcchHHHHHcCCC
Confidence 455666664 899999999999999999887666 4555544565
No 67
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=82.92 E-value=2.4 Score=35.25 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~g-k~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
++++.|.+++. +.|+.+..-||.=|+.+++.+|.- +..++ +.-..++.++.++|++||.+|+.++..+.
T Consensus 215 ~~l~~l~~~~~-d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~ 284 (852)
T 4fdd_A 215 SFIENLFALAG-DEEPEVRKNVCRALVMLLEVRMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLA 284 (852)
T ss_dssp HHHHHHHHHHT-CCCHHHHHHHHHHHHHHHHHCHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhCHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHh
Confidence 67888888874 567888888999999999998741 11122 23455677889999999999998877765
No 68
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=80.97 E-value=0.99 Score=37.52 Aligned_cols=72 Identities=14% Similarity=0.237 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccc--hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA--GRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~--gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
-+++..|...|. +.++.+-..||.=||.|....+. ....+. +.=..+++.|.+++++||..|..|+..+...
T Consensus 399 ~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~--~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 399 PELIPHLIQCLS-DKKALVRSITCWTLSRYAHWVVSQPPDTYLK--PLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp HHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHHHHHHSCTTTTHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 467788888884 56778888899999998887643 111222 1224466677789999999999999988743
No 69
>1hko_A Cytochrome B5; electron transfer protein, heme, electron transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1 PDB: 2i96_A*
Probab=79.86 E-value=0.78 Score=30.46 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=32.7
Q ss_pred CCCcceeehh--cchHHHHHHHccchhHHHHhhChH--HHHHhhhcCC
Q 034108 33 SSDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 76 (103)
Q Consensus 33 s~d~~~laVa--c~Dige~vr~~P~gk~i~~~lg~K--~~vM~Lm~h~ 76 (103)
+.++.+++|- .+|+..|+..||.|..++....|| +..|.-..|+
T Consensus 21 ~~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aGkDaT~~F~~~~Hs 68 (104)
T 1hko_A 21 NSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 68 (104)
T ss_dssp SSSSBEEEETTEEEEHHHHSSSSSSCSHHHHTTCSEECHHHHTTTTCC
T ss_pred CCCCEEEEECCEEEECCcchhhCcChHHHHHHhcCccchHHHHHcCCC
Confidence 3455666664 789999999999999999888777 4555544565
No 70
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=79.65 E-value=2.9 Score=34.50 Aligned_cols=71 Identities=18% Similarity=0.382 Sum_probs=49.8
Q ss_pred CcHHHHHHHHHHhc---cCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhh--cCCCHHhHHHHHHHHHHHh
Q 034108 18 NDFQILRVLLTILD---TSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM--NHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 18 ~~~~llk~L~~lL~---~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm--~h~d~eVr~eAL~avQklm 92 (103)
.+-+++-..++.+. .+.||.+.+.|+.=||.+. ...+++.+- .-|..++ .|++|-||+.|..|+-++.
T Consensus 104 ~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~-----~~e~~~~l~--~~v~~~l~~~d~~~~VRK~A~~al~kl~ 176 (621)
T 2vgl_A 104 SNSELIRLINNAIKNDLASRNPTFMGLALHCIANVG-----SREMAEAFA--GEIPKILVAGDTMDSVKQSAALCLLRLY 176 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHC-----CHHHHHHHT--THHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccC-----CHHHHHHHH--HHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 33454444444332 2678888888888888773 244666654 6678888 8999999999999999988
Q ss_pred cch
Q 034108 93 LGA 95 (103)
Q Consensus 93 ~~~ 95 (103)
-..
T Consensus 177 ~~~ 179 (621)
T 2vgl_A 177 RTS 179 (621)
T ss_dssp HHC
T ss_pred HhC
Confidence 643
No 71
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=77.57 E-value=1.8 Score=37.48 Aligned_cols=72 Identities=11% Similarity=0.139 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhh-ChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDL-KAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+++..|.+.+..+.++.+..-|+.=++++++..|. .+...+ ..-..++.++.++++.||..|+.|+..+...
T Consensus 133 ~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~--~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~ 205 (1230)
T 1u6g_C 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGG--LLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCS--SCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHh--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh
Confidence 67778888885456777777777778888876643 111111 1335677788999999999999999988754
No 72
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=77.51 E-value=4 Score=33.11 Aligned_cols=71 Identities=10% Similarity=0.058 Sum_probs=46.0
Q ss_pred HHHHHHHHHhccCC-CcceeehhcchHHHHHHHccchhHHHHhh--ChHHHHHhhhcCC--CHHhHHHHHHHHHHHhc
Q 034108 21 QILRVLLTILDTSS-DPRALAVACFDLSQFIQYHPAGRVIVTDL--KAKERVMKLMNHE--NTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~-d~~~laVac~Dige~vr~~P~gk~i~~~l--g~K~~vM~Lm~h~--d~eVr~eAL~avQklm~ 93 (103)
+++..|.+.+..++ |+.+...|+.-++.+++.++ + ..+... ..-..++..+.++ +++||..|+.|+..++.
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~-~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-P-EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-H-HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-H-hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 46777777774322 66666667777777777763 1 112221 1223466677776 79999999999998763
No 73
>1cyo_A Cytochrome B5; electron transport; HET: HEM; 1.50A {Bos taurus} SCOP: d.120.1.1 PDB: 1bfx_A* 1i87_A 1i8c_A 1iet_A 1ieu_A 1do9_A* 1aqa_A* 1aw3_A* 1axx_A* 1b5a_A* 1b5b_A* 1blv_A* 1mny_A* 2axx_A* 1ib7_A* 1jex_A* 1ehb_A* 1nx7_A* 1u9u_A* 1m20_A* ...
Probab=75.83 E-value=0.68 Score=29.99 Aligned_cols=43 Identities=21% Similarity=0.452 Sum_probs=32.1
Q ss_pred CCcceeehh--cchHHHHHHHccchhHHHHhhChH--HHHHhhhcCC
Q 034108 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 76 (103)
Q Consensus 34 ~d~~~laVa--c~Dige~vr~~P~gk~i~~~lg~K--~~vM~Lm~h~ 76 (103)
.++.+++|- .+|+..|+..||.|..++....|| +..|.-..|+
T Consensus 18 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~Hs 64 (93)
T 1cyo_A 18 SKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHS 64 (93)
T ss_dssp TTEEEEEETTEEEECTTTTTTCTTCSHHHHHHTTSBCHHHHHHTTCC
T ss_pred CCCEEEEECCEEEECCCcchhCcChHHHHHHhcCccchHHHHHcCCC
Confidence 445555554 789999999999999998888777 4555544565
No 74
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=75.72 E-value=4.1 Score=35.25 Aligned_cols=68 Identities=9% Similarity=0.181 Sum_probs=53.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
+++..|.+.|. +.++.+-..|+.=|+.+++..|. ..+.. ....++..+.++++.||.-|..++..++.
T Consensus 48 ~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~--~~~~~--i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~ 115 (1230)
T 1u6g_C 48 KVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE--YQVET--IVDTLCTNMLSDKEQLRDISSIGLKTVIG 115 (1230)
T ss_dssp HHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--HHHHH--HHHHHHHHTTCSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--HHHHH--HHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 78888999985 56777666677778999887765 33333 56778888899999999999999998874
No 75
>3ner_A Cytochrome B5 type B; heme, electron transport; HET: HEM; 1.45A {Homo sapiens} SCOP: d.120.1.1 PDB: 1awp_A* 3mus_A* 1b5m_A* 1eue_A* 1icc_A* 1lj0_A* 2i89_A*
Probab=74.99 E-value=0.83 Score=29.60 Aligned_cols=44 Identities=16% Similarity=0.387 Sum_probs=31.8
Q ss_pred CCcceeeh--hcchHHHHHHHccchhHHHHhhChH--HHHHhhhcCCC
Q 034108 34 SDPRALAV--ACFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHEN 77 (103)
Q Consensus 34 ~d~~~laV--ac~Dige~vr~~P~gk~i~~~lg~K--~~vM~Lm~h~d 77 (103)
.++.+++| -.+|+..|+..||.|..++....|| +..+.-..|+.
T Consensus 23 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~~Hs~ 70 (92)
T 3ner_A 23 LKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSS 70 (92)
T ss_dssp TTEEEEEETTEEEECGGGTTTCTTCSHHHHTTTTSBCHHHHHHTTCCH
T ss_pred CCCEEEEECCEEEEcccccccCCCHHHHHHHhcCCcchHHHHHcCCCH
Confidence 34555555 3689999999999999999888766 45555445653
No 76
>3lf5_A Cytochrome B5 reductase 4; NCB5OR, electron transfer, redox, heme, endoplasmic reticulu flavoprotein, iron, metal-binding, NAD, oxidoreductase; HET: HEM; 1.25A {Homo sapiens}
Probab=74.45 E-value=0.46 Score=30.63 Aligned_cols=42 Identities=14% Similarity=0.414 Sum_probs=29.6
Q ss_pred CCcceeeh--hcchHHHHHHHccchhHHHHhhChH--HHHHhhhcC
Q 034108 34 SDPRALAV--ACFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNH 75 (103)
Q Consensus 34 ~d~~~laV--ac~Dige~vr~~P~gk~i~~~lg~K--~~vM~Lm~h 75 (103)
.++.+++| -.+|+..|+..||.|..++....|| +..++-..|
T Consensus 19 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~l~~~aG~DaT~~F~~~h~ 64 (88)
T 3lf5_A 19 KDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHR 64 (88)
T ss_dssp TTEEEEEETTEEEECGGGTTTCTTCHHHHHTTTTEECHHHHHHHHT
T ss_pred CCCEEEEECCEEEECccchhhCcChhhhhhhcCCCcchHHHHHHCC
Confidence 34555555 3689999999999999988887665 344544433
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=74.30 E-value=2.5 Score=37.02 Aligned_cols=71 Identities=15% Similarity=0.261 Sum_probs=58.9
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccc-hhHHHHhhChHHHHHhhhcC--CCHHhHHHHHHHHHHHhc
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA-GRVIVTDLKAKERVMKLMNH--ENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~-gk~i~~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm~ 93 (103)
=++.|+.++ .++|+.+...|+-=|+.+.-.+|. -+.+++.-++-+.+.+++.. +|++++..|+.++.-|+-
T Consensus 655 rL~lLV~Ll-~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 655 NFNILVKLL-QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 488999999 467877777788777777767775 57777776888999999987 999999999999999984
No 78
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=74.28 E-value=5.7 Score=32.17 Aligned_cols=70 Identities=11% Similarity=0.202 Sum_probs=49.6
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccch---hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG---RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~g---k~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+++..|...|. +.++.+-.-||.=||.|+...|.. ...+.. .=..++..|.++ +.||..|+.|++.+...
T Consensus 408 ~~l~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~--~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 408 QAMPTLIELMK-DPSVVVRDTAAWTVGRICELLPEAAINDVYLAP--LLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHH--HHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhCchhcccHHHHHH--HHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 46777777774 456777788899999999988652 122222 223466677764 99999999999998754
No 79
>2keo_A Probable E3 ubiquitin-protein ligase HERC2; protein of unknown function, HERC2 cytochrome domain, ligase binding, phosphoprotein; NMR {Homo sapiens}
Probab=73.54 E-value=0.66 Score=31.41 Aligned_cols=42 Identities=7% Similarity=0.082 Sum_probs=30.6
Q ss_pred Ccceeehh--cchHHHHHHHccchhHHHHhhChH--HHHHhhhcCC
Q 034108 35 DPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHE 76 (103)
Q Consensus 35 d~~~laVa--c~Dige~vr~~P~gk~i~~~lg~K--~~vM~Lm~h~ 76 (103)
++.+++|- .+|+..|+..+|.|..++....|| +..|.-..|+
T Consensus 38 ~d~wvvi~G~VYDVT~fl~~HPGG~~~l~~~aGkDaT~~F~~~~Hs 83 (112)
T 2keo_A 38 GGFWTVIDGKVYDIKDFQTQSLTENSILAQFAGEDPVVALEAALQF 83 (112)
T ss_dssp TCCEEEETTEEEEHHHHHHHHTSTTSTTGGGTTSCHHHHHHHHHHS
T ss_pred CCEEEEECCEEEECCcchhhCCCchhhhhhhCCccchHHHhHcCCC
Confidence 44566664 789999999999999988888776 3444443354
No 80
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=72.75 E-value=11 Score=27.12 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhh----cCCCHHhHHHHHHHHHHHhc
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM----NHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm----~h~d~eVr~eAL~avQklm~ 93 (103)
-+.+|.|.+-| .+.||.+.--|+.=|-..|++. |..+-.+++-++.+-+|. ...+++||..+|.-+|.|..
T Consensus 41 k~a~r~l~krl-~~~n~~~~l~aL~Lle~~vkNc--G~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 41 KNAFAAIKKKM-NSPNPHSSCYSLLVLESIVKNC--GAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS--HHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcc--CHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 34555555555 3567777666777788888887 777766666555433322 35689999999999998874
No 81
>1cxy_A Cytochrome B5; helix, beta-strand, electron transport; HET: HEM; 1.65A {Ectothiorhodospira shaposhnikovii} SCOP: d.120.1.1
Probab=71.65 E-value=0.38 Score=30.91 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=35.9
Q ss_pred CCcceeehh--cchHHHHHHHccchhHHHHhhChH--HHHHh----hhcCCCHHhHHHHHHHHHHH
Q 034108 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMK----LMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 34 ~d~~~laVa--c~Dige~vr~~P~gk~i~~~lg~K--~~vM~----Lm~h~d~eVr~eAL~avQkl 91 (103)
.++.+++|- .+|+..|+..||.|..++....|| +..+. -..|+. .|...++++
T Consensus 21 ~~~~wv~i~g~VYDvT~f~~~HPGG~~~i~~~aG~DaT~~f~~~~~~~~Hs~-----~a~~~L~~~ 81 (90)
T 1cxy_A 21 PDDCWMAIHGKVYDLTPYVPNHPGPAGMMLVWCGQESTEAWETKSYGEPHSS-----LAARLLQRY 81 (90)
T ss_dssp TTEEEEEETTEEEECTTTGGGCCSSTTTTGGGTTSBCHHHHHHTTTTCCCCH-----HHHHHHHHT
T ss_pred CCCEEEEECCEEEECccchhhCcChHHHHHHHCCcchhHHHhhcccccCCCH-----HHHHHHHhC
Confidence 445555554 789999999999999988888776 45555 234652 344555554
No 82
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=71.63 E-value=11 Score=32.42 Aligned_cols=83 Identities=16% Similarity=0.185 Sum_probs=60.4
Q ss_pred cHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccc--hhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHH
Q 034108 11 NITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPA--GRVIVTDLKAKERVMKLMNHENTEVTKSALLCI 88 (103)
Q Consensus 11 Na~kf~e~~~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~--gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~av 88 (103)
+++.|-.+ .+-+..|+++|+ ++|--+.-=+..=|..++...|. =+.|+..-+|-.++|.++..+.+-||-||+..+
T Consensus 113 ~~d~f~~~-~~~i~~Ll~lL~-~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 113 FTEIFIKQ-QENVTLLLSLLE-EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHHHHHHS-THHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHHHHHcC-CccHHHHHHHhc-CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 55666444 577889999995 55644433344445666677765 334555558899999999999999999999999
Q ss_pred HHHhcch
Q 034108 89 QRLFLGA 95 (103)
Q Consensus 89 Qklm~~~ 95 (103)
..+.-+|
T Consensus 191 ~~Lt~~n 197 (651)
T 3grl_A 191 QALTRSN 197 (651)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 8888776
No 83
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=71.22 E-value=15 Score=25.27 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhh---c------CCCHHhHHHHHHHHHH
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLM---N------HENTEVTKSALLCIQR 90 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm---~------h~d~eVr~eAL~avQk 90 (103)
-+.+|.|.+-| .+.+|.+.--|+.=|-.+|++. |...-.+.+-+..+=+|. . ..+++||..+|..+|.
T Consensus 37 k~a~rai~krl-~~~n~~vql~AL~LLe~~vkNC--G~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (148)
T 1mhq_A 37 THAPWLLAHKI-QSPQEKEALYALTVLEMCMNHC--GEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFS 113 (148)
T ss_dssp HHHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHc--CHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHH
Confidence 34556666666 3667777666777777888988 877777777665544433 2 2489999999999998
Q ss_pred Hh
Q 034108 91 LF 92 (103)
Q Consensus 91 lm 92 (103)
|=
T Consensus 114 W~ 115 (148)
T 1mhq_A 114 WT 115 (148)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 84
>1x3x_A Cytochrome B5; hemoprotein, porcine parasitic namatode, electron transport; HET: HEM; 1.80A {Ascaris suum}
Probab=71.18 E-value=0.68 Score=29.16 Aligned_cols=32 Identities=16% Similarity=0.379 Sum_probs=24.6
Q ss_pred CCcceeehh--cchHHHHHHHccchhHHHHhhChH
Q 034108 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK 66 (103)
Q Consensus 34 ~d~~~laVa--c~Dige~vr~~P~gk~i~~~lg~K 66 (103)
.+..+++|- .+|+..|+..+|.| .++....||
T Consensus 17 ~~~~wv~i~g~VYDvT~f~~~HPGG-~~i~~~aG~ 50 (82)
T 1x3x_A 17 QNDLWIIYDGEVHDMTSFYKEHPGG-KVILNKAGQ 50 (82)
T ss_dssp TTEEEEEETTEEEECGGGGGGCTTG-GGGGGGTTS
T ss_pred CCCEEEEECCEEEECCcchhhCcCh-hhhhhhCCC
Confidence 344555554 78999999999999 888777665
No 85
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=66.59 E-value=21 Score=24.91 Aligned_cols=70 Identities=9% Similarity=0.132 Sum_probs=42.6
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHH---Hhhhc-CCCHHhHHHHHHHHHHHhc
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERV---MKLMN-HENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~v---M~Lm~-h~d~eVr~eAL~avQklm~ 93 (103)
+.+|.|.+-|. +.+|.+.--|+-=|-.+|++. |...-.+++-|..+ ..++. ..+++||..+|..+|.|=.
T Consensus 52 eA~ral~krl~-~~n~~vql~AL~LLd~~vkNc--G~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 52 DCLKAIMKRVN-HKVPHVALQALTLLGACVANC--GKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHT--CHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHh--hHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 34444444442 455555444555566778877 66666555544333 22333 3689999999999998863
No 86
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=66.22 E-value=20 Score=25.27 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=44.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHh---hhc------CCCHHhHHHHHHHHHHH
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK---LMN------HENTEVTKSALLCIQRL 91 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~---Lm~------h~d~eVr~eAL~avQkl 91 (103)
+.+|.|.+-|. +.+|.+.--|+.=|-.+|++. |...-.+.+-+..+=+ +.. ..+++||..+|..+|.|
T Consensus 50 ~A~ral~krl~-~~n~~vql~AL~LLd~~vkNC--G~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 50 IAVRLLAHKIQ-SPQEWEALQALTVLEACMKNC--GRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHS--HHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHc--CHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 34455555552 456655555556667788887 7777766665543333 333 24799999999999987
Q ss_pred h
Q 034108 92 F 92 (103)
Q Consensus 92 m 92 (103)
=
T Consensus 127 ~ 127 (171)
T 1juq_A 127 T 127 (171)
T ss_dssp H
T ss_pred H
Confidence 5
No 87
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=65.82 E-value=20 Score=24.79 Aligned_cols=69 Identities=12% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHh---hhc------CCCHHhHHHHHHHHHHH
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK---LMN------HENTEVTKSALLCIQRL 91 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~---Lm~------h~d~eVr~eAL~avQkl 91 (103)
+.++.|.+-|. +.+|.+.--|+.=|-..|++. |...-.+.+-++.+=+ ++. ..+++||...|..+|.|
T Consensus 48 ~a~ral~krl~-~~n~~v~l~AL~LLe~cvkNC--G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 124 (149)
T 3g2s_A 48 LATRLLAHKIQ-SPQEWEAIQALTVLETCMKSC--GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSW 124 (149)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHC--CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhc--CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHH
Confidence 44555555553 556665555566677788888 7777666665554433 333 46899999999999987
Q ss_pred h
Q 034108 92 F 92 (103)
Q Consensus 92 m 92 (103)
=
T Consensus 125 ~ 125 (149)
T 3g2s_A 125 T 125 (149)
T ss_dssp H
T ss_pred H
Confidence 4
No 88
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=65.23 E-value=23 Score=28.41 Aligned_cols=73 Identities=12% Similarity=0.219 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhccCCCccee--ehhc-chHH----HHHHHccch----hHHHHhh-ChHHHHHhhhcCCCHHhHHHHHHH
Q 034108 20 FQILRVLLTILDTSSDPRAL--AVAC-FDLS----QFIQYHPAG----RVIVTDL-KAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~l--aVac-~Dig----e~vr~~P~g----k~i~~~l-g~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
-+++-.|..+|. ++|+.++ +|.| --|. +++-..|.. ...++.+ ..|.+|..+..++|.-||-.|++-
T Consensus 99 ~~~l~~L~~LL~-d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKF 177 (386)
T 3o2t_A 99 LKLIANLNMLLR-DENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKF 177 (386)
T ss_dssp HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 455556666663 4555432 1111 1111 444455543 4666666 699999999999999999999999
Q ss_pred HHHHhc
Q 034108 88 IQRLFL 93 (103)
Q Consensus 88 vQklm~ 93 (103)
+|.++.
T Consensus 178 le~VIl 183 (386)
T 3o2t_A 178 VEGLIV 183 (386)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 89
>1mj4_A Sulfite oxidase; cytochrome B5, heme, oxidoreductase; HET: HEM; 1.20A {Homo sapiens} SCOP: d.120.1.1
Probab=65.12 E-value=1.1 Score=28.19 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=23.0
Q ss_pred Ccceeehh--cchHHHHHHHccchhHHHHhhChHH
Q 034108 35 DPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAKE 67 (103)
Q Consensus 35 d~~~laVa--c~Dige~vr~~P~gk~i~~~lg~K~ 67 (103)
|+.+++|- .+|+..|+..||.|..++-...||+
T Consensus 20 ~~~wv~i~g~VYDvt~f~~~HPGG~~~il~~aG~D 54 (82)
T 1mj4_A 20 TGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGP 54 (82)
T ss_dssp TEEEEEETTEEEECTTTGGGSTTCHHHHHTTTTSB
T ss_pred CCeEEEECCEEEEchHHHHhCCCHhHHHHHHcCCC
Confidence 34566664 7899999999999955444444443
No 90
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=65.02 E-value=26 Score=24.17 Aligned_cols=70 Identities=16% Similarity=0.069 Sum_probs=41.4
Q ss_pred HHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHh----hhc---CCCHHhHHHHHHHHHHHhc
Q 034108 22 ILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK----LMN---HENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 22 llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~----Lm~---h~d~eVr~eAL~avQklm~ 93 (103)
.+|.|.+-|..+.+|.+.--|+.=|-.+|++. |...-.+.+-+..+=+ ++. .++++||..+|..+|.|=.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNc--G~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNC--GHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS--CHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh--CHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 34444444432345544444555566677777 7777766665544333 222 2456999999999998754
No 91
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=63.46 E-value=18 Score=29.13 Aligned_cols=72 Identities=11% Similarity=0.036 Sum_probs=50.7
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~g-k~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.++..|.+.+ .+.|+.+-..||.=|+.++..+|.. ...+.+ ..=..++..+.+++++||.+|+..+..+...
T Consensus 224 ~ll~~l~~~~-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 296 (861)
T 2bpt_A 224 YLMQVVCEAT-QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp HHHHHHHHHH-TCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 3677777777 4667777778888899999988742 111110 1223456677899999999999998877644
No 92
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=61.04 E-value=7.5 Score=29.36 Aligned_cols=37 Identities=14% Similarity=0.300 Sum_probs=32.5
Q ss_pred hHHHHhh-ChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034108 57 RVIVTDL-KAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 57 k~i~~~l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
...++.+ ..|.+|..+..++|.-||-.|++-+|.++.
T Consensus 136 ~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl 173 (257)
T 3gs3_A 136 EQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHH
Confidence 4566665 689999999999999999999999999874
No 93
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=60.33 E-value=23 Score=24.01 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=40.0
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHH---HhhhcCCCHHhHHHHHHHHHHHh
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERV---MKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~v---M~Lm~h~d~eVr~eAL~avQklm 92 (103)
+.+|.|.+-|. +.+|.+.--|.-=|-.+|++. |...-.+.+-+..+ -.++...+++||...|..+|.|=
T Consensus 42 ~a~rai~Krl~-~~n~~~ql~AL~LLe~~vkNc--G~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 42 DCLRSIMRRVN-HKDPHVAMQALTLLGACVSNC--GKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHS--CHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhc--CHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 44455555552 345544433444455667776 55555444333322 23335578999999999999874
No 94
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=59.97 E-value=5.2 Score=24.67 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=18.1
Q ss_pred HHHHHHHccchhHHHHhhC
Q 034108 46 LSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 46 ige~vr~~P~gk~i~~~lg 64 (103)
||++|+.||+...++.++|
T Consensus 11 I~eiv~~~P~~~~vf~~~G 29 (73)
T 2k5e_A 11 FAQALQTHPGVAGVLRSYN 29 (73)
T ss_dssp HHHHHHHCTHHHHHHHHTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 8999999999999999987
No 95
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=58.85 E-value=5.2 Score=24.92 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=18.1
Q ss_pred HHHHHHHccchhHHHHhhC
Q 034108 46 LSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 46 ige~vr~~P~gk~i~~~lg 64 (103)
||++++.||+-+.++.++|
T Consensus 15 I~elv~~~P~~~~vl~~~G 33 (81)
T 2fi0_A 15 VAEVVDKHPEVLEILVELG 33 (81)
T ss_dssp HHHHHHHCGGGHHHHTTTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 7899999999999999988
No 96
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=53.77 E-value=21 Score=30.79 Aligned_cols=76 Identities=17% Similarity=0.221 Sum_probs=57.4
Q ss_pred HHHHHHHHHhccCC-CcceeehhcchHHHHHHHccchhHHHHhhC---------hHHHHHhhhc-CCCHHhHHHHHHHHH
Q 034108 21 QILRVLLTILDTSS-DPRALAVACFDLSQFIQYHPAGRVIVTDLK---------AKERVMKLMN-HENTEVTKSALLCIQ 89 (103)
Q Consensus 21 ~llk~L~~lL~~s~-d~~~laVac~Dige~vr~~P~gk~i~~~lg---------~K~~vM~Lm~-h~d~eVr~eAL~avQ 89 (103)
.++..|++++-.+. ...+++.|..=+|+.+|-.|.....+.+.. .-..+|.+++ +...++|..|..|++
T Consensus 311 g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ 390 (651)
T 3grl_A 311 GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQ 390 (651)
T ss_dssp THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 36888999985442 345778899999999999999888877653 1122444453 567999999999999
Q ss_pred HHhcchh
Q 034108 90 RLFLGAK 96 (103)
Q Consensus 90 klm~~~~ 96 (103)
-.+.+|+
T Consensus 391 ay~~~N~ 397 (651)
T 3grl_A 391 CFLYKNQ 397 (651)
T ss_dssp HHHTTCH
T ss_pred HHHhCCH
Confidence 9998874
No 97
>2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A
Probab=52.82 E-value=2.5 Score=31.13 Aligned_cols=34 Identities=15% Similarity=0.080 Sum_probs=27.2
Q ss_pred HHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHH
Q 034108 50 IQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLC 87 (103)
Q Consensus 50 vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~a 87 (103)
.|.|.-|-+|+.+||++. |+||++ || -|+.||..
T Consensus 127 ~R~ygigAqIL~dLGV~~--irLLTn-np-~K~~~L~g 160 (196)
T 2bz1_A 127 ERDFTLCADMFKLLGVNE--VRLLTN-NP-KKVEILTE 160 (196)
T ss_dssp CCCTHHHHHHHHHTTCCS--EEEECS-CH-HHHHHHHH
T ss_pred cccHHHHHHHHHHcCCCc--EEccCC-CC-cccccccc
Confidence 377888999999999876 789986 45 37888865
No 98
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=50.73 E-value=20 Score=24.93 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=39.8
Q ss_pred cCCCc-ceeehhcchHHHHHHHccch--hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 32 TSSDP-RALAVACFDLSQFIQYHPAG--RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 32 ~s~d~-~~laVac~Dige~vr~~P~g--k~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+|+|| .+=.=...+|++....+|.. ..|+ +.++.=++++++.|+|.||+.+.-|+.+-
T Consensus 20 Ts~d~~~~pgylm~EIA~~T~~s~~~~~~eim------~~L~kRL~~k~~~vk~KaL~lL~yL~~~G 80 (140)
T 1vdy_A 20 TSDEDKVAPVYKLEEICDLLRSSHVSIVKEFS------EFILKRLDNKSPIVKQKALRLIKYAVGKS 80 (140)
T ss_dssp TCSCSSCCCHHHHHHHHHHHHHSCHHHHHHHH------HHHHHHHTSSSHHHHHHHHHHHHHHTTTS
T ss_pred hcCCCCCCcHHHHHHHHHHHHhcchhHHHHHH------HHHHHHhcCCCcceeehHHHHHHHHHHhC
Confidence 45554 33344567888888777632 3333 34556678899999999999999988554
No 99
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=49.70 E-value=11 Score=23.29 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=17.9
Q ss_pred HHHHHHHccchhHHHHhhC
Q 034108 46 LSQFIQYHPAGRVIVTDLK 64 (103)
Q Consensus 46 ige~vr~~P~gk~i~~~lg 64 (103)
||++++.||+-..++.++|
T Consensus 9 I~eIv~~~P~~~~vf~~~G 27 (76)
T 2k53_A 9 IADVLQMDRGTAPIFINNG 27 (76)
T ss_dssp HHHHHHHCGGGHHHHHHTT
T ss_pred HHHHHHHCHHHHHHHHHcC
Confidence 7999999999999999987
No 100
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=49.58 E-value=40 Score=23.45 Aligned_cols=45 Identities=22% Similarity=0.265 Sum_probs=30.8
Q ss_pred hHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 45 DLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 45 Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+|...|+.-|.|-+-.-+ .|+.-|.|.||.|.+.||.-+-.+|-|
T Consensus 38 eicD~I~~~~~~~keA~r-----al~krl~~~n~~vql~AL~LLd~~vkN 82 (163)
T 1x5b_A 38 DICDKVGSTPNGAKDCLK-----AIMKRVNHKVPHVALQALTLLGACVAN 82 (163)
T ss_dssp HHHHHHHHSSSHHHHHHH-----HHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHH-----HHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 666777777654322211 244446899999999999988887765
No 101
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=48.42 E-value=39 Score=23.70 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=31.5
Q ss_pred hHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 45 DLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 45 Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+|...|+.-|.|-+-+- ..|..-+.|+|+.|.+.||.-+-.+|-|
T Consensus 36 eicD~I~~~~~~~k~A~-----ral~krl~~~n~~vql~AL~LLd~~vkN 80 (171)
T 1juq_A 36 GFCDQINKELEGPQIAV-----RLLAHKIQSPQEWEALQALTVLEACMKN 80 (171)
T ss_dssp HHHHHHHHSTTHHHHHH-----HHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHH-----HHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 67777777765433221 2344556899999999999988888765
No 102
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=47.60 E-value=54 Score=26.04 Aligned_cols=76 Identities=12% Similarity=0.158 Sum_probs=54.3
Q ss_pred cHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHh-hC---------hHHHHHhhhc---CCCHHhHHHHH
Q 034108 19 DFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTD-LK---------AKERVMKLMN---HENTEVTKSAL 85 (103)
Q Consensus 19 ~~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~-lg---------~K~~vM~Lm~---h~d~eVr~eAL 85 (103)
..+.+++|..++. |.++.++--|.-=|--||-+-|.+-.++.+ .. -=..+|.+++ ..|++++-.|+
T Consensus 200 ~~~fI~~lyslv~-s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am 278 (339)
T 3dad_A 200 HSDTIQWLYTLCA-SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV 278 (339)
T ss_dssp CHHHHHHHHHGGG-CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence 5678999999996 667665444444467778777766666533 11 1247888887 78999999999
Q ss_pred HHHHHHhcch
Q 034108 86 LCIQRLFLGA 95 (103)
Q Consensus 86 ~avQklm~~~ 95 (103)
.=+.+++..-
T Consensus 279 tLIN~lL~~a 288 (339)
T 3dad_A 279 TLINKTLAAL 288 (339)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9888888653
No 103
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=46.66 E-value=24 Score=29.63 Aligned_cols=56 Identities=14% Similarity=0.215 Sum_probs=45.4
Q ss_pred CCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 34 SDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 34 ~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.++...-.|+.=|..|.+++|.=..- |=...+.|...+|..||.+|++.+-.+-..
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~ 95 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG 95 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh
Confidence 46788889999999999999973321 446678899999999999999987666544
No 104
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=45.68 E-value=53 Score=23.80 Aligned_cols=70 Identities=13% Similarity=0.194 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHH---Hhhh-cCCCHHhHHHHHHHHHHHh
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERV---MKLM-NHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~v---M~Lm-~h~d~eVr~eAL~avQklm 92 (103)
-+.++.|.+=|. +.||.+.--|+.=|-..|++. |..+-.++.-++.+ -.|+ ...+++||..+|.-+|.|=
T Consensus 44 k~a~ral~krl~-~~n~~v~l~aL~LLe~~vkNc--G~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 44 KYAVNSIKKKVN-DKNPHVALYALEVMESVVKNC--GQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHH--CHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhc--chHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 355555555553 556655555555666777777 66655555544422 2223 3568999999999999874
No 105
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=45.64 E-value=8 Score=31.80 Aligned_cols=44 Identities=20% Similarity=0.463 Sum_probs=31.5
Q ss_pred CCcceeehh--cchHHHHHHHccchhHHHHhhChH--HHHHhhhcCCCH
Q 034108 34 SDPRALAVA--CFDLSQFIQYHPAGRVIVTDLKAK--ERVMKLMNHENT 78 (103)
Q Consensus 34 ~d~~~laVa--c~Dige~vr~~P~gk~i~~~lg~K--~~vM~Lm~h~d~ 78 (103)
.++.+++|- .+|+..|+..||.|..++....|| +..+.-. |+..
T Consensus 22 ~~~~wv~i~g~VYDvt~f~~~HPGG~~~i~~~aG~DaT~~f~~~-H~~~ 69 (511)
T 1kbi_A 22 PDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL-HAPN 69 (511)
T ss_dssp TTEEEEEETTEEEECTTTGGGCTTCHHHHHTTTTSBCHHHHGGG-SCTT
T ss_pred CCCEEEEECCEEEECCcchhhCcChHHHHHHHcCcchhhhhhhc-CCHH
Confidence 445555553 789999999999999999887666 4555544 5543
No 106
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=45.08 E-value=27 Score=27.81 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=27.5
Q ss_pred ChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 64 KAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 64 g~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+|=..++....+.+.+..-.||.|++.+|.+
T Consensus 160 ~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~ 190 (339)
T 3dad_A 160 EGLSCLIRVGAAADHNYQSYILRALGQLMLF 190 (339)
T ss_dssp THHHHHHHHHTTSCHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHhcChHHHHHHHHHHHHHHhc
Confidence 5667777888888999999999999999986
No 107
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=43.57 E-value=11 Score=30.99 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=30.3
Q ss_pred CChHHHHHcHHh-hhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHH
Q 034108 3 KDPLFWRDNITN-FEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVT 61 (103)
Q Consensus 3 ~se~FW~ENa~k-f~e~~~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~ 61 (103)
.++.||.+|-.. |.+=.-.+-+.+.++-+.......-.-...|+.+||+.+|+=+..-.
T Consensus 295 ~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~s~~dlk~~v~~lP~~~~~~~ 354 (606)
T 3c98_A 295 EDDDLWIALRHKHIAEVSQEVTRSLKDFSSSKRMNTGEKTTMRDLSQMLKKMPQYQKELS 354 (606)
T ss_dssp TTCHHHHHHTTSBHHHHHHHHHHHHHHHHHHTTC-------CCSCCCTTTTCGGGHHHHH
T ss_pred CCchhHHHHhccCHHHHHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHhHHHHHHHH
Confidence 367899998765 44432233333333322111111112245799999999998554443
No 108
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=43.46 E-value=9.9 Score=31.75 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=36.4
Q ss_pred CChHHHHHcHHh-hhhCcHHHHHHHHHHhcc---CC-Ccc--eeehhcchHHHHHHHccchhHHHHhh----ChHHHHHh
Q 034108 3 KDPLFWRDNITN-FEENDFQILRVLLTILDT---SS-DPR--ALAVACFDLSQFIQYHPAGRVIVTDL----KAKERVMK 71 (103)
Q Consensus 3 ~se~FW~ENa~k-f~e~~~~llk~L~~lL~~---s~-d~~--~laVac~Dige~vr~~P~gk~i~~~l----g~K~~vM~ 71 (103)
.++.||.||-.+ |.+=.-.+-+.+.++-++ .. +.. --.-...||.+||+.+|+=+..-..+ +.=+.+|+
T Consensus 277 ~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~ 356 (650)
T 2xhe_A 277 EDDDIWLQMRHLHISEVFRKVKSSFDEFCVSARRLQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINM 356 (650)
T ss_dssp TTCTTHHHHTTSBHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHhccCHHHHHHHHHHHHHHHHHHhhhhccccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899998776 443322222222222111 11 100 01224679999999999865433333 44444444
Q ss_pred hh
Q 034108 72 LM 73 (103)
Q Consensus 72 Lm 73 (103)
.+
T Consensus 357 ~i 358 (650)
T 2xhe_A 357 AF 358 (650)
T ss_dssp HS
T ss_pred HH
Confidence 43
No 109
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=41.48 E-value=74 Score=21.97 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHh----hhcC---CCHHhHHHHHHHHHHHh
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMK----LMNH---ENTEVTKSALLCIQRLF 92 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~----Lm~h---~d~eVr~eAL~avQklm 92 (103)
-+.+|.|.+=|..+.++.+.--|+.=|-..|+.. |..+-.+.+-|+.+=+ +++. .+.+||...|..+|.|=
T Consensus 52 keA~ral~KRl~~~~n~~~~l~AL~LLe~cvkNC--G~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa 129 (152)
T 3rru_A 52 KDAVKALKKRISKNYNHKEIQLTLSLIDMCVQNC--GPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWS 129 (152)
T ss_dssp HHHHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHS--CHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhc--CHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHH
Confidence 3455555555543345544334566677788888 8888888877766534 2332 24589999999999885
Q ss_pred c
Q 034108 93 L 93 (103)
Q Consensus 93 ~ 93 (103)
.
T Consensus 130 ~ 130 (152)
T 3rru_A 130 Q 130 (152)
T ss_dssp T
T ss_pred H
Confidence 3
No 110
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=39.97 E-value=61 Score=22.13 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=29.5
Q ss_pred hHHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 45 DLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 45 Dige~vr~~P~g-k~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+|...|+.-|.| |..+.. .|.| +.|+||.|...||.-+-.+|-|
T Consensus 24 eicD~I~~~~~~~k~a~ra--i~kr----l~~~n~~vql~AL~LLe~~vkN 68 (148)
T 1mhq_A 24 NFCEQVNTDPNGPTHAPWL--LAHK----IQSPQEKEALYALTVLEMCMNH 68 (148)
T ss_dssp HHHHHHHHSSHHHHHHHHH--HHHH----HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCccHHHHHHH--HHHH----hcCCCHHHHHHHHHHHHHHHHH
Confidence 666677766643 222222 2233 4799999999999988888755
No 111
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=39.87 E-value=23 Score=27.80 Aligned_cols=29 Identities=17% Similarity=0.172 Sum_probs=22.4
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 67 ERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
.-|-+.+.|+||-||.-|+.|+-+++-.+
T Consensus 142 ~~lk~~L~d~~pyVRk~A~l~~~kL~~~~ 170 (355)
T 3tjz_B 142 RYMKQAIVDKVPSVSSSALVSSLHLLKCS 170 (355)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhccC
Confidence 34556778889999999999988887554
No 112
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=38.74 E-value=11 Score=22.61 Aligned_cols=34 Identities=24% Similarity=0.549 Sum_probs=21.9
Q ss_pred HHHhhhcC--CCHHhHHHHHHHHHHHhcchhhhhhhh
Q 034108 68 RVMKLMNH--ENTEVTKSALLCIQRLFLGAKYTSFLQ 102 (103)
Q Consensus 68 ~vM~Lm~h--~d~eVr~eAL~avQklm~~~~~~~~~~ 102 (103)
|+.+||.+ ...+|--+-|.|+|+.+ +++|.+.++
T Consensus 11 RaiELle~lq~sgevp~~KL~aLq~VL-qSdF~~aVR 46 (53)
T 1zl8_A 11 RILELMEHVQKTGEVNNAKLASLQQVL-QSEFFGAVR 46 (53)
T ss_dssp HHHHHHHHHGGGSSSTHHHHHHHHHHH-SCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHH-HHHHHHHHH
Confidence 44455532 34567777788889988 566776553
No 113
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=37.97 E-value=11 Score=30.83 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=30.1
Q ss_pred CChHHHHHcHHh-hhhCcHHHHHHHHHHhccCCCcc-eeehhcchHHHHHHHccchhHHH
Q 034108 3 KDPLFWRDNITN-FEENDFQILRVLLTILDTSSDPR-ALAVACFDLSQFIQYHPAGRVIV 60 (103)
Q Consensus 3 ~se~FW~ENa~k-f~e~~~~llk~L~~lL~~s~d~~-~laVac~Dige~vr~~P~gk~i~ 60 (103)
.++.||.||-.. |.+=.-.+-+.+.++-+...... .-.--..||.+||+.+|+=+.--
T Consensus 280 ~~D~~~~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~s~~~lk~~v~~lP~~~~~~ 339 (591)
T 1epu_A 280 EKDDLWVEMRHQHIAVVSQNVTKKLKQFADEKRMGTAADKAGIKDLSQMLKKMPQYQKEL 339 (591)
T ss_dssp GGGSSHHHHTTSBHHHHHHHHHHHHHHHHHHTC--------CCCCCHHHHHTHHHHHHHH
T ss_pred CCChHHHHHhccCHHHHHHHHHHHHHHHHHhccccccccccCHHHHHHHHHHhHHHHHHH
Confidence 357899998765 44333233333333322111000 01224679999999999755433
No 114
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=35.93 E-value=37 Score=24.68 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=18.2
Q ss_pred hcCCCHHhHHHHHHHHHHHhcc
Q 034108 73 MNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 73 m~h~d~eVr~eAL~avQklm~~ 94 (103)
++|+||.|...||.-+-.+|-|
T Consensus 54 l~~~n~~v~l~aL~LLe~~vkN 75 (226)
T 3zyq_A 54 VNDKNPHVALYALEVMESVVKN 75 (226)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 4699999999999988777644
No 115
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=35.76 E-value=95 Score=22.02 Aligned_cols=28 Identities=18% Similarity=0.354 Sum_probs=23.0
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 67 ERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+.++..+.|.||.||-+++.++..++..
T Consensus 142 e~l~~~l~~Knpkv~~~~l~~l~~~l~~ 169 (278)
T 4ffb_C 142 ELVIPFFEKKLPKLIAAAANCVYELMAA 169 (278)
T ss_dssp HHHGGGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 3455667899999999999999998743
No 116
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=34.34 E-value=41 Score=25.02 Aligned_cols=49 Identities=10% Similarity=0.028 Sum_probs=31.8
Q ss_pred hHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchH-HHHHHHc
Q 034108 5 PLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDL-SQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVac~Di-ge~vr~~ 53 (103)
..+.++|+.+|...=-++-+.+.+.|..-.......|.+||- |.|.+.|
T Consensus 131 a~~y~~N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~y 180 (282)
T 3mfq_A 131 AEMIQKNTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASY 180 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHC
Confidence 356778888887665556666666674322223345678884 7888888
No 117
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=33.58 E-value=45 Score=25.52 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=41.1
Q ss_pred cHHHHHHHHHHhcc---CCCcceeehhcchHHHHHHHccch-hHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 19 DFQILRVLLTILDT---SSDPRALAVACFDLSQFIQYHPAG-RVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 19 ~~~llk~L~~lL~~---s~d~~~laVac~Dige~vr~~P~g-k~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
+-++++..+.+|-. -.||.+--=..+-|++..|.+|+- ..|+ ..++.|++++|..=|--||.-+..+=.+
T Consensus 101 ~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~------rdi~smltskd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 101 KPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIV------RDFMSMLSSKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp CHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHH------HHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred CHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHH------HHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence 44455555554411 134444333455666666766652 2222 3456777788877777777777666555
Q ss_pred h-hhh
Q 034108 95 A-KYT 98 (103)
Q Consensus 95 ~-~~~ 98 (103)
. +|+
T Consensus 175 ~~~yv 179 (253)
T 2db0_A 175 SFKYV 179 (253)
T ss_dssp THHHH
T ss_pred Ccccc
Confidence 4 443
No 118
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=32.98 E-value=58 Score=27.58 Aligned_cols=55 Identities=9% Similarity=0.049 Sum_probs=41.5
Q ss_pred CcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhc
Q 034108 35 DPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFL 93 (103)
Q Consensus 35 d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 93 (103)
.|.+.+.||.=||.|....| ...+.. +=..++..|.++++.||-.|-.|++.+.-
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~--~~~l~~--~l~~l~~~L~d~~~~V~~~A~~Al~~~~~ 525 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLT--KAQLIE--LMPILATFLQTDEYVVYTYAAITIEKILT 525 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSC--HHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred CceehHHHHHHHHHHHhhCC--HHHHHH--HHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence 67788889999998888764 223322 22456667788899999999999999875
No 119
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=32.57 E-value=44 Score=25.91 Aligned_cols=28 Identities=7% Similarity=0.215 Sum_probs=23.5
Q ss_pred HHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 67 ERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 67 ~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
..+.+|+..+|+.|+..||.++-+++-.
T Consensus 36 ~~L~~LL~dkD~~vk~raL~~LeellK~ 63 (265)
T 3b2a_A 36 FLILELAGEDDETTRLRAFVALGEILKR 63 (265)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 3456777889999999999999998865
No 120
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=32.51 E-value=25 Score=30.21 Aligned_cols=52 Identities=10% Similarity=0.133 Sum_probs=35.7
Q ss_pred hhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcc
Q 034108 41 VACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 41 Vac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
.+|.=+|.|.+....-...+.. +=..+++.|.++++.|+..|-.|++++.-.
T Consensus 519 ~~~~~lgry~~~~~~~~~~l~~--vl~~ll~~l~~~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 519 DIMYVVGQYPRFLKAHWNFLRT--VILKLFEFMHETHEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHH--HHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 5777788666554322223322 234567778899999999999999998854
No 121
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=31.87 E-value=71 Score=24.96 Aligned_cols=82 Identities=13% Similarity=0.045 Sum_probs=49.0
Q ss_pred HHHHHcHHhh--hhCc----HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHH
Q 034108 6 LFWRDNITNF--EEND----FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTE 79 (103)
Q Consensus 6 ~FW~ENa~kf--~e~~----~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~e 79 (103)
.+=+-||-|+ .=.+ -.+.+-+.+.| .+.+|-+-.-|+-= ..+.+|....+++. .-..+-+++..+|+-
T Consensus 118 ~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L-~d~~pyVRk~A~l~---~~kL~~~~pe~v~~--~~~~l~~ll~d~n~~ 191 (355)
T 3tjz_B 118 DSYRGPAVRALCQITDSTMLQAIERYMKQAI-VDKVPSVSSSALVS---SLHLLKCSFDVVKR--WVNEAQEAASSDNIM 191 (355)
T ss_dssp HHHHHHHHHHHHHHCCTTTHHHHHHHHHHHH-TCSSHHHHHHHHHH---HHHHTTTCHHHHHT--THHHHHHHTTCSSHH
T ss_pred HhHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHH---HHHHhccCHHHHHH--HHHHHHHHhcCCCcc
Confidence 3555565554 1122 23444444455 34566432222211 33556666667764 456788899999999
Q ss_pred hHHHHHHHHHHHhc
Q 034108 80 VTKSALLCIQRLFL 93 (103)
Q Consensus 80 Vr~eAL~avQklm~ 93 (103)
|.|+|+.++..+--
T Consensus 192 V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 192 VQYHALGLLYHVRK 205 (355)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887764
No 122
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=31.54 E-value=48 Score=24.69 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=33.1
Q ss_pred hHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcch-HHHHHHHc
Q 034108 5 PLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFD-LSQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVac~D-ige~vr~~ 53 (103)
..+.++|+.+|...=-++-+.+.+.|..-. ..-.|+.|| .|.|.+.|
T Consensus 149 a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~--~~~~v~~H~af~Yf~~~y 196 (286)
T 3gi1_A 149 KDSYTKNAKAFKKEAEQLTEEYTQKFKKVR--SKTFVTQHTAFSYLAKRF 196 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCS--CCEEEEEESCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCEEEEECCchHHHHHHC
Confidence 457788888887766667777777775332 233467888 78888888
No 123
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=31.45 E-value=36 Score=25.86 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=33.1
Q ss_pred hHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcch-HHHHHHHc
Q 034108 5 PLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFD-LSQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVac~D-ige~vr~~ 53 (103)
..+.++|+.+|.+.=-++-+.+.+.|..-.....-.|+.|| .|.|.+.|
T Consensus 165 a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~y 214 (313)
T 1toa_A 165 TREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAY 214 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHC
Confidence 46788888888776666667777777532211333567888 78888888
No 124
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.19 E-value=80 Score=22.50 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=19.3
Q ss_pred hhcCCCHHhHHHHHHHHHHHhcc
Q 034108 72 LMNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 72 Lm~h~d~eVr~eAL~avQklm~~ 94 (103)
-|.|+||.|...||.-+-.+|.|
T Consensus 50 rl~~~n~~~~l~aL~Lle~~vkN 72 (220)
T 1dvp_A 50 KMNSPNPHSSCYSLLVLESIVKN 72 (220)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHhc
Confidence 35789999999999888887755
No 125
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A*
Probab=30.93 E-value=16 Score=28.32 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=25.8
Q ss_pred ceeehhcchHHH--------------HHHHccchhHHHHhhChHHHHHhhhcCC
Q 034108 37 RALAVACFDLSQ--------------FIQYHPAGRVIVTDLKAKERVMKLMNHE 76 (103)
Q Consensus 37 ~~laVac~Dige--------------~vr~~P~gk~i~~~lg~K~~vM~Lm~h~ 76 (103)
..+|-+|||+|+ ++..|. ++.++|..++-.-..-|++++
T Consensus 108 ll~Aal~HD~~HpG~nN~fli~~~s~LA~lYn-d~SvLEnhH~a~~f~ll~~~~ 160 (338)
T 3ecm_A 108 ALIAATIHDVDHPGRTNSFLCNAGSELAILYN-DTAVLESHHAALAFQLTTGDD 160 (338)
T ss_dssp HHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTT-TSSHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHhccCCCCccchHHHHhCCHHHHHcC-CCChhHHHHHHHHHHHHhcCc
Confidence 356788999983 444553 578888888766555445544
No 126
>1sox_A Sulfite oxidase; oxidoreductase, sulfite oxidation; HET: MTE HEM EPE; 1.90A {Gallus gallus} SCOP: b.1.18.6 d.120.1.1 d.176.1.1 PDB: 3hc2_A* 3hbq_A* 3hbg_A* 3hbp_A* 3r18_A* 3r19_A*
Probab=30.61 E-value=7.8 Score=31.69 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=23.3
Q ss_pred ceeeh--hcchHHHHHHHccchhHHHHhhChHH
Q 034108 37 RALAV--ACFDLSQFIQYHPAGRVIVTDLKAKE 67 (103)
Q Consensus 37 ~~laV--ac~Dige~vr~~P~gk~i~~~lg~K~ 67 (103)
.++.| -.+|+..|+..||.|..+|-...||+
T Consensus 22 ~Wvii~g~VYDvT~fl~~HPGG~~~il~~aG~D 54 (466)
T 1sox_A 22 VWVTHGTDVFDVTDFVELHPGGPDKILLAAGGA 54 (466)
T ss_dssp EEEEETTEEEECTTTTTTSTTCHHHHGGGTTSB
T ss_pred eEEEECCEEEechHhHhhCcCCcccchhhcCCc
Confidence 34444 37999999999999977776665565
No 127
>1ekj_A Beta-carbonic anhydrase; rossman fold domain, strand exchange, lyase; HET: CIT; 1.93A {Pisum sativum} SCOP: c.53.2.1
Probab=30.07 E-value=17 Score=26.52 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=21.0
Q ss_pred HcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcch
Q 034108 10 DNITNFEENDFQILRVLLTILDTSSDPRALAVACFD 45 (103)
Q Consensus 10 ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVac~D 45 (103)
++-.+|.++.+.--..+.+-|.....|.++.|+|.|
T Consensus 19 ~gN~~f~~~~~~~~~~~~~~La~gQ~P~~lvi~CsD 54 (221)
T 1ekj_A 19 TGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSD 54 (221)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHTTCCCCSEEEEEECC
T ss_pred HHHHHHHhcCcccCHHHHHhhccCCCCcEEEEEeCC
Confidence 444555433332111222334567899999999998
No 128
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=29.97 E-value=1.1e+02 Score=20.97 Aligned_cols=22 Identities=9% Similarity=0.054 Sum_probs=17.9
Q ss_pred hcCCCHHhHHHHHHHHHHHhcc
Q 034108 73 MNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 73 m~h~d~eVr~eAL~avQklm~~ 94 (103)
+.|+||.|...||.-+-.+|-|
T Consensus 57 l~~~n~~v~l~AL~LLe~cvkN 78 (149)
T 3g2s_A 57 IQSPQEWEAIQALTVLETCMKS 78 (149)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHh
Confidence 4689999999999877776643
No 129
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=28.45 E-value=1.1e+02 Score=20.41 Aligned_cols=22 Identities=23% Similarity=0.301 Sum_probs=18.1
Q ss_pred hcCCCHHhHHHHHHHHHHHhcc
Q 034108 73 MNHENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 73 m~h~d~eVr~eAL~avQklm~~ 94 (103)
+.|.||.|.+.||.-+-.+|-|
T Consensus 51 l~~~n~~~ql~AL~LLe~~vkN 72 (140)
T 3ldz_A 51 VNHKDPHVAMQALTLLGACVSN 72 (140)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHH
T ss_pred HcCCChHHHHHHHHHHHHHHHh
Confidence 5789999999999887777644
No 130
>2kvp_A Talin-1; VBS, vinculin, helical bundle, cytoplasm, cytoskeleto membrane, phosphoprotein, structural protein, acetylation, membrane; NMR {Mus musculus}
Probab=27.41 E-value=66 Score=22.91 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=29.2
Q ss_pred CCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034108 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 33 s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+.||.-|.-++.||.+..... +.+-......-+|++|+.+=..+||.|
T Consensus 68 ~~~p~eL~~la~~it~~y~~L-----------a~~~~~A~~t~~~~~i~~~Ik~~Vq~L 115 (165)
T 2kvp_A 68 NTSPEELGPLANQLTSDYGRL-----------ASQAKPAAVAAENEEIGAHIKHRVQEL 115 (165)
T ss_dssp HHCGGGHHHHHHHHHHHHHHH-----------HHHHHHHHHHSSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 468998999999999874433 223333334445555555555555554
No 131
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=26.28 E-value=22 Score=23.18 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=29.6
Q ss_pred cceeehh--cchHHHHHH-HccchhHHHHhhChH--HHHHhhhcCCCH
Q 034108 36 PRALAVA--CFDLSQFIQ-YHPAGRVIVTDLKAK--ERVMKLMNHENT 78 (103)
Q Consensus 36 ~~~laVa--c~Dige~vr-~~P~gk~i~~~lg~K--~~vM~Lm~h~d~ 78 (103)
|..+||- .+|+..|.+ ++|.|-. ..+-|| ++.+.-+.|+..
T Consensus 21 ~~~vaI~G~VYDVT~~~~~~hPGG~~--~~~AG~DaT~~f~~~~~~~~ 66 (102)
T 1j03_A 21 PIYVAIKGRVFDVTTGKSFYGSGGDY--SMFAGKDASRALGKMSKNEE 66 (102)
T ss_dssp CBEEEETTEEEECGGGHHHHSSSSTT--TTTTTSBCHHHHHHTCCCSS
T ss_pred CEEEEECCEEEECCCCccccCCCCcc--cccccchHHHHHHHcCCChh
Confidence 6777775 899999988 5888872 355555 677788877543
No 132
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.77 E-value=68 Score=23.83 Aligned_cols=69 Identities=20% Similarity=0.157 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcc---CCCc--ceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDT---SSDP--RALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~---s~d~--~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
-+.|+|+-+=.+ -.|| .++|++|.+-.+++- +|+|+-.+.+ .|.-|-..|-++--|.|+.+..+.+-+.
T Consensus 48 ~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG-~PE~~i~Laq-----aviyLA~aPKSNs~y~A~~~A~~~v~~~ 121 (204)
T 2r9g_A 48 SICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLG-LPEARIPLAD-----VVVDLCLSPKSNSAYMALDAALADIREG 121 (204)
T ss_dssp HHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHC-TTTTHHHHHH-----HHHHHHHSCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhC-CCHHHHHHHH-----HHHHHHcCCccHHHHHHHHHHHHHHHhc
Confidence 455566655321 1345 467888888888886 7999998843 5666777777777788988888776543
No 133
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=25.72 E-value=58 Score=27.10 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=0.0
Q ss_pred CChHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcC---CCHH
Q 034108 3 KDPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH---ENTE 79 (103)
Q Consensus 3 ~se~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h---~d~e 79 (103)
++.++|. .+..+|..|.++.+--.|+.=+-..|+.+=..-.-=++-+.|..+|+++.+ +.+-
T Consensus 54 ~~p~~~~---------------~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~ 118 (963)
T 2x19_B 54 VSPQAWH---------------FSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFASGSKI 118 (963)
T ss_dssp HSTTHHH---------------HHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTTTSCHH
T ss_pred cCHHHHH---------------HHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHcCCCHH
Q ss_pred hHHHHHHHHHHHhcc--h-hhhhhhh
Q 034108 80 VTKSALLCIQRLFLG--A-KYTSFLQ 102 (103)
Q Consensus 80 Vr~eAL~avQklm~~--~-~~~~~~~ 102 (103)
||-+.-.++..++.+ . .|-+++.
T Consensus 119 ir~kl~~~la~i~~~~~p~~Wp~~l~ 144 (963)
T 2x19_B 119 VLTRLCVALASLALSMMPDAWPCAVA 144 (963)
T ss_dssp HHHHHHHHHHHHHHHHTTTTSTTHHH
T ss_pred HHHHHHHHHHHHHHHhCccccchHHH
No 134
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=25.68 E-value=49 Score=24.82 Aligned_cols=49 Identities=10% Similarity=0.111 Sum_probs=30.1
Q ss_pred hHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcch-HHHHHHHc
Q 034108 5 PLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFD-LSQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVac~D-ige~vr~~ 53 (103)
..+.++|+.+|...=-++-+.+.+.|..-.....-.|+.|| .|.|.+.|
T Consensus 151 a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~y 200 (294)
T 3hh8_A 151 KETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAY 200 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHc
Confidence 35667777777665555556666666432221233457788 56888887
No 135
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=25.63 E-value=53 Score=24.21 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=32.4
Q ss_pred hHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcch-HHHHHHHc
Q 034108 5 PLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFD-LSQFIQYH 53 (103)
Q Consensus 5 e~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVac~D-ige~vr~~ 53 (103)
..+.++|+.+|...=-++-+.+.+.|..-.. .. .|+.|| .|.|.+.|
T Consensus 144 a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~-~~-~v~~H~af~Yf~~~y 191 (284)
T 2prs_A 144 RAKLDANLKDFEAQLASTETQVGNELAPLKG-KG-YFVFHDAYGYFEKQF 191 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT-CC-EEEEESCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-Ce-EEEECccHHHHHHHC
Confidence 4678888888877666666777777754332 22 466788 77888888
No 136
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=24.62 E-value=57 Score=27.39 Aligned_cols=75 Identities=7% Similarity=0.036 Sum_probs=50.4
Q ss_pred HHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcC---CCHHhHHHHHHHHHHHhcch
Q 034108 21 QILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH---ENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 21 ~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h---~d~eVr~eAL~avQklm~~~ 95 (103)
+-...+..+|..+.|+.+--.|+.=+-..++..-..-.-=++-+.|..||+++.+ +.+-||-+.-.++..++.+-
T Consensus 39 ~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~~~~~~vr~kl~~~la~i~~~~ 116 (971)
T 2x1g_F 39 QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFAGGPKIVLNRLCISLGAYIVHM 116 (971)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHc
Confidence 3444677888767777766667666666666531100001334689999999965 36899999999999988763
No 137
>2b0h_A Talin-1; vinculin, helical bundle, VBS, structural protein; NMR {Mus musculus} SCOP: a.24.9.2
Probab=24.49 E-value=1.7e+02 Score=20.15 Aligned_cols=48 Identities=19% Similarity=0.144 Sum_probs=28.0
Q ss_pred CCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHH
Q 034108 33 SSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRL 91 (103)
Q Consensus 33 s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl 91 (103)
+.||.-|.-++.||.+.-... +.+-......-+++||+.+=..+||.|
T Consensus 40 ~~~p~eL~~la~~lt~~Y~~L-----------a~~~~~A~~~~~~~~v~~~Ir~~Vq~L 87 (137)
T 2b0h_A 40 NTSPEELGPLANQLTSDYGRL-----------ASQAKPAAVAAENEEIGAHIKHRVQEL 87 (137)
T ss_dssp TTCSSTHHHHHHHHHHHHHHH-----------HHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 578999999999998863332 222333334445555555555555444
No 138
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=24.23 E-value=51 Score=29.56 Aligned_cols=70 Identities=11% Similarity=0.209 Sum_probs=46.0
Q ss_pred HHHHHHHHHhccCC--C--cceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcCCCHHhHHHHHHHHHHHh
Q 034108 21 QILRVLLTILDTSS--D--PRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNHENTEVTKSALLCIQRLF 92 (103)
Q Consensus 21 ~llk~L~~lL~~s~--d--~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 92 (103)
++++.|..+.+... | +.+-+..|.=+|+|.|..-.....++- .=..+++-|..++++|+.-|-.|..++-
T Consensus 521 ~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~--vl~~L~~~m~~~~~~vq~aA~~af~~i~ 594 (1073)
T 3gjx_A 521 TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKT--VVNKLFEFMHETHDGVQDMACDTFIKIA 594 (1073)
T ss_dssp HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHH--HHHHHHHHTTCCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 55666666654322 2 234444678888877775444445544 3456778888899999999988887763
No 139
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ...
Probab=23.83 E-value=78 Score=24.69 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=24.5
Q ss_pred eeehhcchHH--------------HHHHHccchhHHHHhhChHHHHHhhhcC
Q 034108 38 ALAVACFDLS--------------QFIQYHPAGRVIVTDLKAKERVMKLMNH 75 (103)
Q Consensus 38 ~laVac~Dig--------------e~vr~~P~gk~i~~~lg~K~~vM~Lm~h 75 (103)
.+|-+|||+| .+...| +.+.++|..++..-.. +|+.
T Consensus 135 liAAl~HDv~HpG~~N~fli~~~s~LA~lY-nd~SvLEnhH~a~a~~-iL~~ 184 (347)
T 1tbf_A 135 LIAALSHDLDHPGVSNQFLINTNSELALMY-NDESVLEHHHFDQCLM-ILNS 184 (347)
T ss_dssp HHHHHHTTTTCCSSCHHHHHHTTCHHHHHT-TTSSHHHHHHHHHHHH-HHHS
T ss_pred HHHHHHccCCCCCCCCchHHhcCCHHHHHc-CCCcHHHHHHHHHHHH-HHcC
Confidence 5777899999 345555 3478899988766554 4443
No 140
>2w3q_A Carbonic anhydrase 2; lyase, inhibition, sulfonamide; 1.34A {Cryptococcus neoformans} PDB: 2w3n_A
Probab=23.42 E-value=35 Score=25.39 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.7
Q ss_pred hccCCCcceeehhcch
Q 034108 30 LDTSSDPRALAVACFD 45 (103)
Q Consensus 30 L~~s~d~~~laVac~D 45 (103)
|.....|.++.|+|.|
T Consensus 59 La~gQ~P~~lvI~CsD 74 (243)
T 2w3q_A 59 QVKGQAPNFLWIGCAD 74 (243)
T ss_dssp HHHCCCCSEEEEEECC
T ss_pred hccCCCCCEEEEEecC
Confidence 4457899999999998
No 141
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=22.08 E-value=1.9e+02 Score=19.62 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=29.2
Q ss_pred hHHHHHHHccchhHHHHhhChHHHHHhhhc-CCCHHhHHHHHHHHHHHhcc
Q 034108 45 DLSQFIQYHPAGRVIVTDLKAKERVMKLMN-HENTEVTKSALLCIQRLFLG 94 (103)
Q Consensus 45 Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~-h~d~eVr~eAL~avQklm~~ 94 (103)
||...|+.-|.|=+-.-+ .|..-++ ++|+.|.+.||.-+-.+|-|
T Consensus 39 eicD~I~~~~~~~k~a~r-----al~krl~~~~n~~v~l~AL~LLd~~vkN 84 (157)
T 1elk_A 39 EICDIINETEEGPKDALR-----AVKKRIVGNKNFHEVMLALTVLETCVKN 84 (157)
T ss_dssp HHHHHHHHSSSHHHHHHH-----HHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHH-----HHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 677777776654322221 2333344 58999999999888877755
No 142
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ...
Probab=22.06 E-value=29 Score=26.88 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=24.4
Q ss_pred eeehhcchHH--------------HHHHHccchhHHHHhhChHHHHHhhhcC
Q 034108 38 ALAVACFDLS--------------QFIQYHPAGRVIVTDLKAKERVMKLMNH 75 (103)
Q Consensus 38 ~laVac~Dig--------------e~vr~~P~gk~i~~~lg~K~~vM~Lm~h 75 (103)
.+|-+|||+| .+...|.. .++|..++..-+ .+|+.
T Consensus 112 liAAl~HDv~HpG~~N~fli~~~~~LA~lYnd--SvLE~hH~a~a~-~iL~~ 160 (331)
T 2our_A 112 LIACLCHDLDHRGFSNSYLQKFDHPLAALYST--STMEQHHFSQTV-SILQL 160 (331)
T ss_dssp HHHHHHTTTTCCSCCHHHHHHTTCHHHHHSCS--SHHHHHHHHHHH-HHHTS
T ss_pred HHHHHHccCCCCCCCCcHHHhcCCHHHHhcCC--chhHHHHHHHHH-HHHhc
Confidence 5677899999 35667766 789988876555 33443
No 143
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=21.91 E-value=1.7e+02 Score=18.96 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHHHHccchhHHHHhhChHHHHHhhhcC-CCHHhHHHHHHHHHHH
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFIQYHPAGRVIVTDLKAKERVMKLMNH-ENTEVTKSALLCIQRL 91 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~vr~~P~gk~i~~~lg~K~~vM~Lm~h-~d~eVr~eAL~avQkl 91 (103)
.++.+.|-+.++. .++.. |-|+=.-.+..|--..++..-++=-.|=.|-.| +|++|+.-|=.-|-+|
T Consensus 15 ~~i~k~L~k~~~~-~~~~~----~l~~L~~L~~~~iT~e~L~~T~IGk~Vn~LrKh~~~~~V~~lAk~Lv~~W 82 (103)
T 1wjt_A 15 LRIAKKLEKMVSR-KKTEG----ALDLLKKLNSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSLAKVLIKNW 82 (103)
T ss_dssp HHHHHHHHHHHHT-TCCSS----HHHHHHHHHTSCCCHHHHHHTCHHHHHHHHHHHCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCHHH----HHHHHHHHhCCCCCHHHHHHcchhHHHHHHHccCCcHHHHHHHHHHHHHH
Confidence 3556666666642 22221 223333347778899999998888888899998 9999999886666554
No 144
>3qy1_A Carbonic anhydrase; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 1.54A {Salmonella enterica subsp} SCOP: c.53.2.1 PDB: 1i6p_A 1i6o_A 1t75_A 2esf_A
Probab=21.80 E-value=39 Score=24.93 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=13.7
Q ss_pred hccCCCcceeehhcch
Q 034108 30 LDTSSDPRALAVACFD 45 (103)
Q Consensus 30 L~~s~d~~~laVac~D 45 (103)
|.+...|.++.|+|.|
T Consensus 32 La~gQ~P~~~vi~C~D 47 (223)
T 3qy1_A 32 LAQAQKPRFLWIGCSD 47 (223)
T ss_dssp HHSCCCCSEEEEEETT
T ss_pred hccCCCCCEEEEEecC
Confidence 4467899999999999
No 145
>3bcz_A Protein MEMO1; alpha/beta structure, peptide binding protein; 2.10A {Homo sapiens} PDB: 3bd0_A
Probab=21.38 E-value=50 Score=24.80 Aligned_cols=55 Identities=16% Similarity=0.222 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhccCCCcceeehhcchHHHHH---HHccch------hHHHHhhChHHHHHhhhcCCCHH
Q 034108 20 FQILRVLLTILDTSSDPRALAVACFDLSQFI---QYHPAG------RVIVTDLKAKERVMKLMNHENTE 79 (103)
Q Consensus 20 ~~llk~L~~lL~~s~d~~~laVac~Dige~v---r~~P~g------k~i~~~lg~K~~vM~Lm~h~d~e 79 (103)
.++-+.|.+++. |+.++-|+..|+.++= .+.|.+ -...+++. .++|+.+...|++
T Consensus 163 ~~~g~~l~~~~~---~~~~l~V~SsDlsH~g~~fgy~~~~~~~~~~~~~~~~~D--~~~i~~i~~~d~~ 226 (293)
T 3bcz_A 163 QEFGKLFSKYLA---DPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLD--KMGMSIIEQLDPV 226 (293)
T ss_dssp HHHHHHHHHHHT---CTTEEEEEECCCCEEBGGGTBCCCCGGGCSHHHHHHHHH--HHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHh---CCCeEEEEeCCccCCCCCCCCCccccccchhHHHHHHHH--HHHHHHHHcCCHH
Confidence 355556666663 4479999999999871 112221 13344433 6778888877764
No 146
>1z8m_A Conserved hypothetical protein HP0894; structural genomics, helicobac pylori, unknown function; NMR {Helicobacter pylori} SCOP: d.298.1.2
Probab=21.26 E-value=1.1e+02 Score=17.89 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=20.5
Q ss_pred CChHHHHHcHHhhhhCcH--HHHHHHHHHhccCCCc
Q 034108 3 KDPLFWRDNITNFEENDF--QILRVLLTILDTSSDP 36 (103)
Q Consensus 3 ~se~FW~ENa~kf~e~~~--~llk~L~~lL~~s~d~ 36 (103)
.+..||++ ..++..++. +.++.+++.|. ..+|
T Consensus 6 ~t~~a~kd-lk~l~~~~~~~~~~~~~i~~l~-~~~p 39 (88)
T 1z8m_A 6 LKKSFQKD-FDKLLLNGFDDSVLNEVILTLR-KKEP 39 (88)
T ss_dssp BCHHHHHH-HHHHHTTTCCHHHHHHHHHHHT-TSCC
T ss_pred ECHHHHHH-HHHHHHcCccHHHHHHHHHHHh-cCCC
Confidence 46789985 777765554 56666667763 2355
No 147
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=21.19 E-value=21 Score=25.83 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=29.0
Q ss_pred ChHHHHHcHHhhhhCcHHHHHHHHHHhccCCCcceeehhcchHHHHHH
Q 034108 4 DPLFWRDNITNFEENDFQILRVLLTILDTSSDPRALAVACFDLSQFIQ 51 (103)
Q Consensus 4 se~FW~ENa~kf~e~~~~llk~L~~lL~~s~d~~~laVac~Dige~vr 51 (103)
+..+|..+...+.+.....+..+++.+.......+|-|+|-. |.+..
T Consensus 60 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~-G~~~~ 106 (318)
T 2fk8_A 60 SCAYFEPPELTLEEAQYAKVDLNLDKLDLKPGMTLLDIGCGW-GTTMR 106 (318)
T ss_dssp SCCCCSSTTCCHHHHHHHHHHHHHTTSCCCTTCEEEEESCTT-SHHHH
T ss_pred ceeeeCCCCCCHHHHHHHHHHHHHHhcCCCCcCEEEEEcccc-hHHHH
Confidence 344555444445555556677777776544566899999976 65543
No 148
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=20.55 E-value=57 Score=26.97 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.3
Q ss_pred HHhhhcCCCHHhHHHHHHHHHHHhcch
Q 034108 69 VMKLMNHENTEVTKSALLCIQRLFLGA 95 (103)
Q Consensus 69 vM~Lm~h~d~eVr~eAL~avQklm~~~ 95 (103)
+.+.|+++|+++|..|+.|+.-|+.+.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~~~ 65 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQDA 65 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTTSH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHcCc
Confidence 557789999999999999999998543
No 149
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=20.21 E-value=61 Score=21.44 Aligned_cols=42 Identities=21% Similarity=0.357 Sum_probs=27.5
Q ss_pred HHHHHHccchhH-HHHhhChHHHHHhhhcCCCHHhHH-----HHHHHHHHH
Q 034108 47 SQFIQYHPAGRV-IVTDLKAKERVMKLMNHENTEVTK-----SALLCIQRL 91 (103)
Q Consensus 47 ge~vr~~P~gk~-i~~~lg~K~~vM~Lm~h~d~eVr~-----eAL~avQkl 91 (103)
.++|+..|.--. +++. +++.|+.|+ -.||+|++ .|-++.++.
T Consensus 27 yeLIq~lP~~l~qv~q~--~v~ai~sl~-~qDpnV~kDLdn~~acL~k~~~ 74 (97)
T 3g80_A 27 YELIKSLPAKLEQLAQE--TQATIQTLM-IADPNVNKDLRAFCEFLTVQHQ 74 (97)
T ss_dssp HHHHHTHHHHHHHHHHH--HHHHHHTCC-CCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhcc-ccCchHHHHHHHHHHHHHHHHH
Confidence 467888886443 3333 788899988 67799975 454444443
Done!