BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034109
         (103 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q2M2S5|COA6_BOVIN Cytochrome c oxidase assembly factor 6 homolog OS=Bos taurus
          GN=COA6 PE=3 SV=1
          Length = 79

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 12/61 (19%)

Query: 21 LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
          +K RQAC+ +RD ++ CL++      TE AS       +CK LR+ F + C   W+K+FD
Sbjct: 6  MKERQACWGARDEYWKCLDEN-----TEDAS-------KCKKLRSSFESSCPQQWIKYFD 53

Query: 81 R 81
          +
Sbjct: 54 K 54


>sp|Q5JTJ3|COA6_HUMAN Cytochrome c oxidase assembly factor 6 homolog OS=Homo sapiens
           GN=COA6 PE=1 SV=1
          Length = 125

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 12/61 (19%)

Query: 21  LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
           +K RQ C+ +RD ++ CL++       E AS       +CK LR+ F + C   W+K+FD
Sbjct: 52  MKERQVCWGARDEYWKCLDEN-----LEDAS-------QCKKLRSSFESSCPQQWIKYFD 99

Query: 81  R 81
           +
Sbjct: 100 K 100


>sp|Q8BGD8|COA6_MOUSE Cytochrome c oxidase assembly factor 6 homolog OS=Mus musculus
          GN=Coa6 PE=1 SV=1
          Length = 79

 Score = 40.0 bits (92), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 12/61 (19%)

Query: 21 LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
          +K RQAC+ +RD ++ CL+  +               A C+ LR+ F   C   W+K+FD
Sbjct: 6  MKERQACWGARDLYWRCLDDNAED------------AARCQKLRSSFEASCPQQWIKYFD 53

Query: 81 R 81
          +
Sbjct: 54 K 54


>sp|Q3E846|COA6_YEAST Cytochrome c oxidase assembly factor 6 OS=Saccharomyces
          cerevisiae (strain ATCC 204508 / S288c) GN=coa6 PE=1
          SV=1
          Length = 104

 Score = 37.7 bits (86), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 12/69 (17%)

Query: 24 RQACYKSRDAFYDCLEKE---SNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80
          R+ C++SRDAF+ CL+K        P    S+     + CK    +F  +C  SW+K+F 
Sbjct: 22 RKLCWESRDAFFQCLDKADILDAMDPKNSKSIK----SHCKVENEKFEENCAHSWIKYF- 76

Query: 81 RLYCKNKRV 89
              K KRV
Sbjct: 77 ----KEKRV 81


>sp|G2TRP6|COA6_SCHPO Cytochrome c oxidase subunit 6B-like protein new16
          OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
          GN=new16 PE=2 SV=1
          Length = 90

 Score = 34.7 bits (78), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 11/61 (18%)

Query: 23 ARQACYKSRDAFYDCLEKESN----KKPTEIASVGLLYPAECKALRAQFVNHCRASWVKH 78
          AR+ C+++RDA++ CL++ S     K  T+ A         C A +  F   C  SWV +
Sbjct: 11 AREKCWEARDAYFGCLDRHSILDGLKDDTKAAQA-------CSAEKTAFETDCVKSWVNY 63

Query: 79 F 79
          F
Sbjct: 64 F 64


>sp|P50876|R144A_HUMAN Probable E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens
           GN=RNF144A PE=1 SV=2
          Length = 292

 Score = 30.0 bits (66), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 48  EIASVGL--LYPAECKALRAQFVNHCRASW 75
           ++  VGL    P +CKA R +F + C+ASW
Sbjct: 121 QLQDVGLQTPQPVQCKACRMEFCSTCKASW 150


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.133    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,560,535
Number of Sequences: 539616
Number of extensions: 1269766
Number of successful extensions: 2105
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2094
Number of HSP's gapped (non-prelim): 7
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)