Query 034109
Match_columns 103
No_of_seqs 105 out of 177
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 09:52:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02297 COX6B: Cytochrome oxi 99.9 1.4E-25 3E-30 148.0 4.0 72 19-93 4-75 (76)
2 cd00926 Cyt_c_Oxidase_VIb Cyto 99.8 1.4E-18 2.9E-23 115.5 5.8 54 20-85 16-69 (75)
3 KOG3057 Cytochrome c oxidase, 99.1 3E-10 6.5E-15 81.1 5.3 52 21-84 52-103 (112)
4 KOG4618 Uncharacterized conser 85.0 1.9 4.1E-05 29.0 4.0 42 25-79 22-63 (74)
5 PF06747 CHCH: CHCH domain; I 82.1 1.2 2.7E-05 24.4 1.9 28 32-72 6-33 (35)
6 KOG4624 Uncharacterized conser 69.5 18 0.0004 25.8 5.5 77 13-103 12-95 (104)
7 KOG4695 Uncharacterized conser 66.0 16 0.00035 26.6 4.7 55 25-96 46-100 (122)
8 PF10762 DUF2583: Protein of u 53.9 4.5 9.7E-05 28.1 0.1 11 74-84 74-84 (89)
9 KOG4114 Cytochrome c oxidase a 39.7 61 0.0013 21.8 3.8 24 56-80 41-64 (73)
10 PRK10692 hypothetical protein; 39.4 13 0.00028 26.0 0.5 11 74-84 74-84 (92)
11 PLN03079 Uncharacterized prote 30.9 76 0.0016 22.1 3.3 13 83-95 61-73 (91)
12 PF08583 Cmc1: Cytochrome c ox 30.9 1.3E+02 0.0028 18.2 6.1 44 20-75 6-49 (69)
13 PF03221 HTH_Tnp_Tc5: Tc5 tran 29.3 31 0.00066 20.4 1.0 18 71-88 48-65 (66)
14 PF08991 DUF1903: Domain of un 24.7 50 0.0011 21.4 1.5 37 27-76 4-40 (67)
15 PF05254 UPF0203: Uncharacteri 23.9 96 0.0021 20.1 2.7 23 58-81 7-30 (68)
16 PF10203 Pet191_N: Cytochrome 22.6 48 0.001 21.5 1.1 51 25-76 3-59 (68)
No 1
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=99.91 E-value=1.4e-25 Score=147.97 Aligned_cols=72 Identities=26% Similarity=0.573 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh
Q 034109 19 VLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCKNKRVTRLL 93 (103)
Q Consensus 19 ~~r~~Rk~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r~~~~~kr~~~ll 93 (103)
+.+++|+.||.+||.||.|||.+++.++. +.+....+.|+.+++.|+++||.|||+||++++.++++.+.||
T Consensus 4 P~~~~r~~Cw~arD~y~~Cl~~~~~~~~~---~~~~~~~~~C~~~~~~ye~~Cp~sWv~~f~~~R~~~~~k~~~~ 75 (76)
T PF02297_consen 4 PNRNQRKKCWQARDDYFKCLDKNGEPDSE---KEKKKDESACKYFRKNYESNCPSSWVKYFDEKRVYDQRKEGTL 75 (76)
T ss_dssp -SSB-HHHHHHHHHHHHHHHHHHHH---------TTTTGGGGHHHHHHHHHHS-HHHHHHHHHH-----HHHT--
T ss_pred CChHHHHHHHHHHHHHHHHHHHcCccccc---cccccchhhhHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhhcc
Confidence 34889999999999999999999985443 2223356899999999999999999999999999999999886
No 2
>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Probab=99.76 E-value=1.4e-18 Score=115.54 Aligned_cols=54 Identities=15% Similarity=0.513 Sum_probs=48.4
Q ss_pred hHHHHHHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHHHHHH
Q 034109 20 LLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCK 85 (103)
Q Consensus 20 ~r~~Rk~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r~~~~ 85 (103)
.+.+|+.||.+||.||.||+++++. .+.|+.++..|+++||.|||+||++++..
T Consensus 16 ~~nq~k~Cw~~y~~y~~Cl~~~ged------------~~~C~~~~~~~es~Cp~~Wve~w~ekR~~ 69 (75)
T cd00926 16 NQNQTKHCWQRYVDYHRCIKAKGED------------ASPCKKFRRVYESLCPQEWLEKWDEQREE 69 (75)
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCc------------hHHHHHHHHHHHHhCcHHHHHHHHHHHHh
Confidence 4899999999999999999998743 26799999999999999999999977654
No 3
>KOG3057 consensus Cytochrome c oxidase, subunit VIb/COX12 [Energy production and conversion]
Probab=99.05 E-value=3e-10 Score=81.13 Aligned_cols=52 Identities=15% Similarity=0.539 Sum_probs=45.9
Q ss_pred HHHHHHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHHHHH
Q 034109 21 LKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYC 84 (103)
Q Consensus 21 r~~Rk~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r~~~ 84 (103)
-.+++.||.+++.|+.|++.++.. ...|+.+++.|++.||.+||++|++++.
T Consensus 52 ~nqtrhCf~~y~dyhrC~~~~geD------------~~~Ck~f~~~y~SlCP~~WV~kWdeqre 103 (112)
T KOG3057|consen 52 TNQTRHCFQRYVDYHRCIKAKGED------------ANPCKKFQKVYRSLCPGEWVEKWDEQRE 103 (112)
T ss_pred cchhHHHHHHHHHHHHHHHHhccc------------chhHHHHHHHHHHhCcHHHHHHHHHhhh
Confidence 578999999999999999998733 2779999999999999999999996653
No 4
>KOG4618 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.00 E-value=1.9 Score=29.03 Aligned_cols=42 Identities=19% Similarity=0.559 Sum_probs=34.6
Q ss_pred HHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHH
Q 034109 25 QACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHF 79 (103)
Q Consensus 25 k~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF 79 (103)
.-|...=++=|.||++|+-. .+.|..--..|. +|-..|-+-=
T Consensus 22 nPCl~es~aSfkCLeennyD------------RsKCq~yFd~Yk-eCKkfwn~ar 63 (74)
T KOG4618|consen 22 NPCLLESSASFKCLEENNYD------------RSKCQDYFDVYK-ECKKFWNEAR 63 (74)
T ss_pred ChHHHHHHHHHHHHHhcCcc------------HHHHHHHHHHHH-HHHHHHHHHH
Confidence 36999999999999999743 378999999886 8999997643
No 5
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=82.06 E-value=1.2 Score=24.38 Aligned_cols=28 Identities=21% Similarity=0.593 Sum_probs=21.0
Q ss_pred hhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcH
Q 034109 32 DAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCR 72 (103)
Q Consensus 32 D~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~ 72 (103)
.+|+.||+.|+.. ...|..+...|.+ |.
T Consensus 6 ~~~~~Cl~~n~~~------------~~~C~~~~~~~~~-C~ 33 (35)
T PF06747_consen 6 KAYLACLKENNFD------------WSKCRKEFKAYKE-CR 33 (35)
T ss_dssp HHHHHHHHCH-SS------------TCCCHHHHHHHHH-HH
T ss_pred HHHHHHHHHCCCc------------HHhhHHHHHHHHH-Hh
Confidence 4799999999753 1679999999974 54
No 6
>KOG4624 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.52 E-value=18 Score=25.78 Aligned_cols=77 Identities=18% Similarity=0.348 Sum_probs=56.8
Q ss_pred CCCCchh-------hHHHHHHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHHHHHH
Q 034109 13 DEVHTDV-------LLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCK 85 (103)
Q Consensus 13 ~~~~~~~-------~r~~Rk~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r~~~~ 85 (103)
-+++++| +++++..|=+.=-.|=.|-..+++. +--.|.++...|. .|...|. =|..|..
T Consensus 12 r~ve~~v~ip~rmn~kakt~~C~~~v~~~a~C~k~~~v~-----------vv~TCrkq~~elk-~Cl~~~~--~D~af~e 77 (104)
T KOG4624|consen 12 RKVEKDVEIPKRMNLKAKTEKCSEFVQDFADCAKASGVS-----------VVPTCRKQNSELK-ECLTQYY--NDEAFLE 77 (104)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCee-----------eehhhHHHHHHHH-HHHHHHh--cCHHHHH
Confidence 3556664 5788899999999999998887653 1256999999997 8999873 3456666
Q ss_pred HHHHHHHhhccccccCCC
Q 034109 86 NKRVTRLLDDGGETRRGI 103 (103)
Q Consensus 86 ~kr~~~ll~~g~~~~~~~ 103 (103)
+.|-.-+++.+..+..||
T Consensus 78 ~~rd~yv~Er~~~ratgi 95 (104)
T KOG4624|consen 78 ECRDEYVQERINKRATGI 95 (104)
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 777777777777666665
No 7
>KOG4695 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.02 E-value=16 Score=26.63 Aligned_cols=55 Identities=15% Similarity=0.381 Sum_probs=38.5
Q ss_pred HHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcc
Q 034109 25 QACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDG 96 (103)
Q Consensus 25 k~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r~~~~~kr~~~ll~~g 96 (103)
..|=.-=-..|.||-+|.-.+ ..|.++...|. +|.+ +|-++.+.++.-. ..|-++
T Consensus 46 ~tC~qEm~vlfaClK~nEF~d------------~~C~Kei~~f~-dC~~---~ya~ea~~~r~~~-gtlges 100 (122)
T KOG4695|consen 46 ATCIQEMSVLFACLKQNEFRD------------DACRKEIQGFL-DCAA---RYAQEARKMRSIQ-ETLGES 100 (122)
T ss_pred hHHHHHHHHHHHHHHhccccc------------hHHHHHHHHHH-HHHH---HHHHHHHHHHHhH-hhhCCc
Confidence 468777788999999975332 67999999998 8876 4666665555544 334333
No 8
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=53.87 E-value=4.5 Score=28.12 Aligned_cols=11 Identities=55% Similarity=0.999 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH
Q 034109 74 SWVKHFDRLYC 84 (103)
Q Consensus 74 SWVkyF~r~~~ 84 (103)
=||+|||++..
T Consensus 74 wWvkh~DkRcr 84 (89)
T PF10762_consen 74 WWVKHFDKRCR 84 (89)
T ss_pred HHHHhhhHhhc
Confidence 49999987644
No 9
>KOG4114 consensus Cytochrome c oxidase assembly protein PET191 [Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=61 Score=21.77 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=19.5
Q ss_pred chhhhHHHHHHHHHhcHHHHHHHHH
Q 034109 56 YPAECKALRAQFVNHCRASWVKHFD 80 (103)
Q Consensus 56 ~~~~C~~er~~FE~~C~~SWVkyF~ 80 (103)
+|..|..+.+.|- .|-.|-|.-=+
T Consensus 41 vPeeC~al~~af~-dCKRslvDmrk 64 (73)
T KOG4114|consen 41 VPEECIALMKAFL-DCKRSLVDMRK 64 (73)
T ss_pred CcHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4688999999997 79888886543
No 10
>PRK10692 hypothetical protein; Provisional
Probab=39.37 E-value=13 Score=26.04 Aligned_cols=11 Identities=36% Similarity=0.926 Sum_probs=8.5
Q ss_pred HHHHHHHHHHH
Q 034109 74 SWVKHFDRLYC 84 (103)
Q Consensus 74 SWVkyF~r~~~ 84 (103)
=||||||++..
T Consensus 74 wwvkh~d~rcr 84 (92)
T PRK10692 74 WWVRHYDKRCR 84 (92)
T ss_pred HHHhhccHhhc
Confidence 49999987643
No 11
>PLN03079 Uncharacterized protein At4g33100; Provisional
Probab=30.92 E-value=76 Score=22.12 Aligned_cols=13 Identities=15% Similarity=0.383 Sum_probs=7.7
Q ss_pred HHHHHHHHHHhhc
Q 034109 83 YCKNKRVTRLLDD 95 (103)
Q Consensus 83 ~~~~kr~~~ll~~ 95 (103)
...++-+..||++
T Consensus 61 aL~ek~I~~lLe~ 73 (91)
T PLN03079 61 HLEDKHLSQILEV 73 (91)
T ss_pred HHHHcChHHHHHH
Confidence 3345666667665
No 12
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=30.89 E-value=1.3e+02 Score=18.25 Aligned_cols=44 Identities=18% Similarity=0.419 Sum_probs=34.3
Q ss_pred hHHHHHHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHH
Q 034109 20 LLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASW 75 (103)
Q Consensus 20 ~r~~Rk~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SW 75 (103)
....+..|.+.=++|-.|... .... +-..|.++...+. .|...+
T Consensus 6 ~~~~~~~C~~~i~~~~~C~~~-~~~~----------~~~~C~~~~~~m~-~Cl~~~ 49 (69)
T PF08583_consen 6 KEEAHKKCADEIEAFAECHKD-RTFK----------FVGKCREEKKAMN-ECLKEE 49 (69)
T ss_pred hHHHHHHhHHHHHHHHHHHhc-chHH----------HHHhhhHHHHHHH-HHHHHH
Confidence 345679999999999999988 3221 1267999999997 899876
No 13
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=29.30 E-value=31 Score=20.40 Aligned_cols=18 Identities=17% Similarity=0.418 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 034109 71 CRASWVKHFDRLYCKNKR 88 (103)
Q Consensus 71 C~~SWVkyF~r~~~~~kr 88 (103)
-..+|+..|.+++....|
T Consensus 48 ~s~~W~~~F~~Rh~i~~r 65 (66)
T PF03221_consen 48 ASKGWLDRFKKRHGIKLR 65 (66)
T ss_dssp --CHHHHHHHHHTS----
T ss_pred cccHHHHHHHHHcCCCCC
Confidence 346799999998755443
No 14
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=24.74 E-value=50 Score=21.42 Aligned_cols=37 Identities=19% Similarity=0.512 Sum_probs=25.3
Q ss_pred HHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHH
Q 034109 27 CYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWV 76 (103)
Q Consensus 27 CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWV 76 (103)
|=..-.+-..||++|+-. ++.|...-..|- .|-.+|.
T Consensus 4 C~~~Ac~iq~CL~~N~Yd------------~~kC~~~i~~l~-~Cck~~y 40 (67)
T PF08991_consen 4 CQKEACAIQKCLQRNNYD------------ESKCQDYIDALY-ECCKKFY 40 (67)
T ss_dssp THHHHHHHHHHHHHTTT-------------CCCTHHHHHHHH-HHHTTS-
T ss_pred hHHHHHHHHHHHHHcCCC------------HHHHHHHHHHHH-HHHHHHH
Confidence 334445778999998743 267999888887 5666663
No 15
>PF05254 UPF0203: Uncharacterised protein family (UPF0203); InterPro: IPR007918 This is a family of small highly conserved proteins. In Saccharomyces cerevisiae (Baker's yeast) the gene YKL053C-A (MDM35) O60200 from SWISSPROT is one of the genes essential for maintenance of normal mitochondrial distribution and morphology (MDM) []; wherease in Homo sapiens (Human), p53CSV, O43715 from SWISSPROT is a direct transcriptional target for p53 and appears to be a cell-survival mediator in response to genotoxic stress including low-levels of DNA damage. It is suggested that p53CSV modulates the apoptotic pathway through interaction with HSP70 and Apaf-1 thereby inhibiting activation of procaspase-3 and procaspase-9 [].
Probab=23.90 E-value=96 Score=20.11 Aligned_cols=23 Identities=26% Similarity=0.826 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHhcHHHHH-HHHHH
Q 034109 58 AECKALRAQFVNHCRASWV-KHFDR 81 (103)
Q Consensus 58 ~~C~~er~~FE~~C~~SWV-kyF~r 81 (103)
..|.+++..|. +|=..|. ..|-+
T Consensus 7 ~eC~~lK~~YD-~CFn~WfsekfLk 30 (68)
T PF05254_consen 7 PECTELKEKYD-QCFNKWFSEKFLK 30 (68)
T ss_pred hHHHHHHHHHH-HHHHHHHHHhhhc
Confidence 67999999998 7888888 66654
No 16
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=22.64 E-value=48 Score=21.51 Aligned_cols=51 Identities=25% Similarity=0.601 Sum_probs=30.4
Q ss_pred HHHHHcchhhHhhhhhcCCC-----Ccchhh-hhCCcchhhhHHHHHHHHHhcHHHHH
Q 034109 25 QACYKSRDAFYDCLEKESNK-----KPTEIA-SVGLLYPAECKALRAQFVNHCRASWV 76 (103)
Q Consensus 25 k~CW~aRD~yF~CLD~~~i~-----~~~e~~-~v~~~~~~~C~~er~~FE~~C~~SWV 76 (103)
..|+..|.++-.||-...=. .|.+=- .-...+|..|..++..|- .|-.+.|
T Consensus 3 ~sC~~~~~~L~~Cl~~SdCv~~~~~t~~~Cl~~~~~~~p~eC~~lr~~f~-eCKrg~l 59 (68)
T PF10203_consen 3 KSCKGIREALAECLQESDCVKKEKRTPKDCLKDPSDELPEECQQLRKAFF-ECKRGML 59 (68)
T ss_pred chHHHHHHHHHHHHhhChhhccCCCCHHHHHcCCCCcCCHHHHHHHHHHH-HHhcccc
Confidence 36999999999999875421 221100 001224677888887776 5655554
Done!