Query 034109
Match_columns 103
No_of_seqs 105 out of 177
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 16:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_H AED, cytochrome C oxida 99.7 2.8E-18 9.7E-23 115.6 4.0 69 4-86 8-79 (85)
2 2lqt_A Coiled-coil-helix-coile 92.8 0.15 5E-06 34.2 4.3 42 27-81 16-57 (85)
3 1ei0_A P8MTCP1; helix-turn-hel 51.9 18 0.00063 20.1 3.3 31 29-71 5-35 (38)
4 2l3i_A Aoxki4A, antimicrobial 42.8 3.5 0.00012 22.4 -0.7 24 70-95 3-27 (30)
5 1hp8_A HU-P8; leukemia, cystei 40.1 26 0.00089 22.1 3.0 37 27-76 7-43 (68)
6 2lql_A Coiled-coil-helix-coile 36.1 18 0.00061 24.5 1.9 41 19-72 53-93 (113)
7 2eel_A Cell death activator CI 14.1 45 0.0016 22.0 0.4 12 32-43 62-73 (91)
8 2bn5_A PSI; nuclear protein, s 10.5 1.4E+02 0.0049 16.4 1.7 10 72-81 5-14 (33)
9 1vyx_A ORF K3, K3RING; zinc-bi 10.5 19 0.00066 21.3 -2.2 22 57-78 23-44 (60)
10 1j03_A Putative steroid bindin 10.4 82 0.0028 20.6 0.8 14 70-83 81-94 (102)
No 1
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=99.72 E-value=2.8e-18 Score=115.60 Aligned_cols=69 Identities=17% Similarity=0.454 Sum_probs=54.1
Q ss_pred hhhhhccCCCCCCchhhHHHHHHHHHcchhhHhh---hhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHH
Q 034109 4 LEAYASRNADEVHTDVLLKARQACYKSRDAFYDC---LEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFD 80 (103)
Q Consensus 4 ~~~~~~~~~~~~~~~~~r~~Rk~CW~aRD~yF~C---LD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~ 80 (103)
+.+|.|.+.|..-|. ..+|+.||.+||.||.| ||+++.. .+.|+.++..|++.||.|||+||+
T Consensus 8 ~~~~~tap~D~rFPn--~nq~k~Cw~~y~df~~C~~~l~~~ged------------~~~C~~~~~~y~slCP~sWVe~wd 73 (85)
T 1v54_H 8 IKNYQTAPFDSRFPN--QNQTRNCWQNYLDFHRCEKAMTAKGGD------------VSVCEWYRRVYKSLCPISWVSTWD 73 (85)
T ss_dssp CCCCCSCCCCTTSCS--SBCHHHHHHHHHHHHHHHHHHHHHTCC------------GGGGHHHHHHHHHHSCHHHHHHHH
T ss_pred ccccccCCCCCCCCC--hHHHHHHHHHHHHHHHHHHHHHhcCCc------------hHHHHHHHHHHHHcChHHHHHHHH
Confidence 345555555555443 79999999999999999 5556532 277999999999999999999999
Q ss_pred HHHHHH
Q 034109 81 RLYCKN 86 (103)
Q Consensus 81 r~~~~~ 86 (103)
+++...
T Consensus 74 eqR~~g 79 (85)
T 1v54_H 74 DRRAEG 79 (85)
T ss_dssp HHHHHT
T ss_pred HHHHhC
Confidence 776543
No 2
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=92.82 E-value=0.15 Score=34.17 Aligned_cols=42 Identities=21% Similarity=0.546 Sum_probs=35.8
Q ss_pred HHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHH
Q 034109 27 CYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDR 81 (103)
Q Consensus 27 CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r 81 (103)
|+++.++=+.||++|+-. ...|...-..|- +|-..|..--..
T Consensus 16 C~~e~~~S~kCL~~n~yD------------r~~C~~yF~~Yk-~CKk~W~~v~~e 57 (85)
T 2lqt_A 16 CLSESDASTRCLDENNYD------------RERCSTYFLRYK-NCRRFWNSIVMQ 57 (85)
T ss_dssp CHHHHHHHHHHHHHTTTC------------TTTTHHHHHHHH-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCcc------------HHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999999843 267999999997 999999875543
No 3
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=51.92 E-value=18 Score=20.11 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=23.0
Q ss_pred HcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhc
Q 034109 29 KSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHC 71 (103)
Q Consensus 29 ~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C 71 (103)
..-.+|..||.+|+.. ++.|...-..+.+-|
T Consensus 5 ~~a~a~q~CL~~n~~d------------~skCq~~id~l~~Cc 35 (38)
T 1ei0_A 5 KQAAEIQKCLQANSYL------------ESKCQAVIQELKKCA 35 (38)
T ss_dssp HHHHHHHHHHHHTTTC------------GGGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCc------------HHHHHHHHHHHHHHH
Confidence 3446899999998743 377999888887544
No 4
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=42.80 E-value=3.5 Score=22.36 Aligned_cols=24 Identities=33% Similarity=0.636 Sum_probs=13.5
Q ss_pred hcHHHHH-HHHHHHHHHHHHHHHHhhc
Q 034109 70 HCRASWV-KHFDRLYCKNKRVTRLLDD 95 (103)
Q Consensus 70 ~C~~SWV-kyF~r~~~~~kr~~~ll~~ 95 (103)
-||.||. +-|+++. -+|+-.||.+
T Consensus 3 rcpkswkckafkqrv--lkrllamlrq 27 (30)
T 2l3i_A 3 RCPKSWKCKAFKQRV--LKRLLAMLRQ 27 (30)
T ss_dssp CSSSCSCCCHHHHHH--HHHHHHHHHT
T ss_pred CCCcchhHHHHHHHH--HHHHHHHHHH
Confidence 3888885 6676442 2444444443
No 5
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=40.15 E-value=26 Score=22.15 Aligned_cols=37 Identities=24% Similarity=0.534 Sum_probs=27.7
Q ss_pred HHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHH
Q 034109 27 CYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWV 76 (103)
Q Consensus 27 CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWV 76 (103)
|=..-.+|..||.+|+-. ++.|...-..+. .|-..|.
T Consensus 7 C~~~AcaiQ~CL~~N~yd------------~skCq~~id~L~-eCc~~~~ 43 (68)
T 1hp8_A 7 CQKQACEIQKCLQANSYM------------ESKCQAVIQELR-KCCAQYP 43 (68)
T ss_dssp THHHHHHHHHHHHHTTTC------------HHHHHHHHHHHH-HHHTTSC
T ss_pred hHHHHHHHHHHHHHcCCc------------HHHHHHHHHHHH-HHHHHHc
Confidence 556667899999999733 378999998888 4555563
No 6
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=36.09 E-value=18 Score=24.52 Aligned_cols=41 Identities=27% Similarity=0.659 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHcchhhHhhhhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcH
Q 034109 19 VLLKARQACYKSRDAFYDCLEKESNKKPTEIASVGLLYPAECKALRAQFVNHCR 72 (103)
Q Consensus 19 ~~r~~Rk~CW~aRD~yF~CLD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~ 72 (103)
+++.=++.|=+-=.+|+.||+.|+-. ...|.++...|. .|+
T Consensus 53 ~~~~I~~~C~~ef~~y~~CL~~n~~~------------~~~Cr~~~~~f~-~Ca 93 (113)
T 2lql_A 53 IIRQIRQACAQPFEAFEECLRQNEAA------------VGNCAEHMRRFL-QCA 93 (113)
T ss_dssp CCHHHHHHTHHHHHHHHHHHHHCTTC------------TTTCCSHHHHHH-HHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHcccc------------HHHHHHHHHHHH-HHH
Confidence 45777889999999999999998732 156988888887 676
No 7
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=14.14 E-value=45 Score=22.00 Aligned_cols=12 Identities=17% Similarity=0.625 Sum_probs=10.0
Q ss_pred hhhHhhhhhcCC
Q 034109 32 DAFYDCLEKESN 43 (103)
Q Consensus 32 D~yF~CLD~~~i 43 (103)
+.||.||..|..
T Consensus 62 EeyF~tLp~nT~ 73 (91)
T 2eel_A 62 EEFFQTLGDNTH 73 (91)
T ss_dssp HHHHTTSCSSEE
T ss_pred hhhhhhCCCCCE
Confidence 679999998765
No 8
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=10.54 E-value=1.4e+02 Score=16.40 Aligned_cols=10 Identities=20% Similarity=0.677 Sum_probs=8.3
Q ss_pred HHHHHHHHHH
Q 034109 72 RASWVKHFDR 81 (103)
Q Consensus 72 ~~SWVkyF~r 81 (103)
.++|+.|+..
T Consensus 5 SaQW~eYYrs 14 (33)
T 2bn5_A 5 SAQWAEYYRS 14 (33)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5799999965
No 9
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=10.48 E-value=19 Score=21.25 Aligned_cols=22 Identities=14% Similarity=0.483 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHhcHHHHHHH
Q 034109 57 PAECKALRAQFVNHCRASWVKH 78 (103)
Q Consensus 57 ~~~C~~er~~FE~~C~~SWVky 78 (103)
|=.|+-.-+.|...|...|+.+
T Consensus 23 PC~C~gs~~~~H~~Cl~~W~~~ 44 (60)
T 1vyx_A 23 ACGCTGELENVHRSCLSTWLTI 44 (60)
T ss_dssp SCCCSSGGGSCCHHHHHHHHHH
T ss_pred CcCCCCchhhhHHHHHHHHHHh
Confidence 3446677778999999999975
No 10
>1j03_A Putative steroid binding protein; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.120.1.2 PDB: 1t0g_A
Probab=10.45 E-value=82 Score=20.56 Aligned_cols=14 Identities=21% Similarity=0.631 Sum_probs=11.1
Q ss_pred hcHHHHHHHHHHHH
Q 034109 70 HCRASWVKHFDRLY 83 (103)
Q Consensus 70 ~C~~SWVkyF~r~~ 83 (103)
.....|+.+|.++|
T Consensus 81 ~~l~~W~~~f~~kY 94 (102)
T 1j03_A 81 NTLNDWETKFEAKY 94 (102)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccC
Confidence 56778999997654
Done!