Query 034109
Match_columns 103
No_of_seqs 105 out of 177
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 16:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034109.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034109hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54h_ a.51.1.1 (H:) Cytochro 96.8 0.00074 5.4E-08 43.3 4.2 66 5-84 3-71 (79)
2 d1gjja2 a.140.1.1 (A:111-153) 31.6 8.2 0.0006 21.1 1.1 14 83-96 30-43 (43)
3 d2bgca1 a.4.5.4 (A:138-237) Li 17.0 40 0.0029 20.3 2.4 19 59-77 80-98 (100)
4 d2il5a1 d.129.3.5 (A:5-168) Hy 14.3 1.3E+02 0.0093 18.0 4.4 29 63-98 135-163 (164)
5 d1vyxa_ g.44.1.3 (A:) IE1B pro 13.9 21 0.0016 19.1 0.3 21 58-78 24-44 (60)
6 d1x41a1 a.4.1.1 (A:8-54) Trans 13.5 34 0.0025 17.9 1.1 11 69-79 37-47 (47)
7 d1ibxa_ d.15.2.1 (A:) Caspase- 12.3 15 0.0011 22.4 -0.8 12 32-43 57-68 (81)
8 d1t0ga_ d.120.1.2 (A:) Putativ 12.0 32 0.0023 21.6 0.8 15 69-83 87-101 (109)
9 d1c9fa_ d.15.2.1 (A:) Caspase- 11.6 17 0.0012 22.5 -0.7 12 32-43 60-71 (87)
10 d1v87a_ g.44.1.1 (A:) Deltex p 10.3 30 0.0022 20.5 0.2 18 58-78 59-76 (114)
No 1
>d1v54h_ a.51.1.1 (H:) Cytochrome c oxidase subunit h {Cow (Bos taurus) [TaxId: 9913]}
Probab=96.76 E-value=0.00074 Score=43.32 Aligned_cols=66 Identities=18% Similarity=0.452 Sum_probs=47.7
Q ss_pred hhhhccCCCCCCchhhHHHHHHHHHcchhhHhh---hhhcCCCCcchhhhhCCcchhhhHHHHHHHHHhcHHHHHHHHHH
Q 034109 5 EAYASRNADEVHTDVLLKARQACYKSRDAFYDC---LEKESNKKPTEIASVGLLYPAECKALRAQFVNHCRASWVKHFDR 81 (103)
Q Consensus 5 ~~~~~~~~~~~~~~~~r~~Rk~CW~aRD~yF~C---LD~~~i~~~~e~~~v~~~~~~~C~~er~~FE~~C~~SWVkyF~r 81 (103)
++|.|-+-|.-=|. -.+=+-||..==.|..| |...+.. ...|...+..|.+.||.+||.=++.
T Consensus 3 ~~~~TaP~D~RFPn--~NQTrhC~~~Y~dyhrC~K~~~~kGed------------~~~C~~f~~~y~sLCP~~WiekWde 68 (79)
T d1v54h_ 3 KNYQTAPFDSRFPN--QNQTRNCWQNYLDFHRCEKAMTAKGGD------------VSVCEWYRRVYKSLCPISWVSTWDD 68 (79)
T ss_dssp CCCCSCCCCTTSCS--SBCHHHHHHHHHHHHHHHHHHHHHTCC------------GGGGHHHHHHHHHHSCHHHHHHHHH
T ss_pred ccccCCCCCccCCc--chhhHHHHHHHHHHHHHHHHHHhcCCC------------chHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45555444443333 24556899999999999 5444422 2679999999999999999999996
Q ss_pred HHH
Q 034109 82 LYC 84 (103)
Q Consensus 82 ~~~ 84 (103)
++.
T Consensus 69 qr~ 71 (79)
T d1v54h_ 69 RRA 71 (79)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 2
>d1gjja2 a.140.1.1 (A:111-153) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.56 E-value=8.2 Score=21.09 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhhcc
Q 034109 83 YCKNKRVTRLLDDG 96 (103)
Q Consensus 83 ~~~~kr~~~ll~~g 96 (103)
..+++++++|+++|
T Consensus 30 ~vy~kkL~~l~~~g 43 (43)
T d1gjja2 30 KLYEKKLLKLREQG 43 (43)
T ss_dssp HHHHHHEHHHHHHC
T ss_pred HHHHHHHHHHHHcc
Confidence 45677888888876
No 3
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=17.00 E-value=40 Score=20.33 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHhcHHHHHH
Q 034109 59 ECKALRAQFVNHCRASWVK 77 (103)
Q Consensus 59 ~C~~er~~FE~~C~~SWVk 77 (103)
-=+.+..-|...||+.|-|
T Consensus 80 ~A~~~de~~~~~~~~~~~~ 98 (100)
T d2bgca1 80 YAPKLDEWFYLACPATWGK 98 (100)
T ss_dssp HCHHHHHHHHHHCHHHHHT
T ss_pred HhcccchhhhccCchhhhh
Confidence 3445777788899999964
No 4
>d2il5a1 d.129.3.5 (A:5-168) Hypothetical protein SA2116 {Staphylococcus aureus [TaxId: 1280]}
Probab=14.27 E-value=1.3e+02 Score=17.99 Aligned_cols=29 Identities=7% Similarity=0.282 Sum_probs=22.5
Q ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 034109 63 LRAQFVNHCRASWVKHFDRLYCKNKRVTRLLDDGGE 98 (103)
Q Consensus 63 er~~FE~~C~~SWVkyF~r~~~~~kr~~~ll~~g~~ 98 (103)
....+...+..-|-.+|+ +++.||+.|..
T Consensus 135 ~~~~~~~~~~~Gw~~~l~-------~L~~~lE~g~~ 163 (164)
T d2il5a1 135 KKKEYHDAMVHGFELMFD-------KMYHVIETSTQ 163 (164)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHH-------HHHHHHhccCC
Confidence 344566678999999996 78899998754
No 5
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=13.86 E-value=21 Score=19.11 Aligned_cols=21 Identities=14% Similarity=0.501 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHhcHHHHHHH
Q 034109 58 AECKALRAQFVNHCRASWVKH 78 (103)
Q Consensus 58 ~~C~~er~~FE~~C~~SWVky 78 (103)
-.|..-...|...|...|+.+
T Consensus 24 c~c~~c~h~~H~~Cl~~W~~~ 44 (60)
T d1vyxa_ 24 CGCTGELENVHRSCLSTWLTI 44 (60)
T ss_dssp CCCSSGGGSCCHHHHHHHHHH
T ss_pred cccCCCCCEEcHHHHHHHHhh
Confidence 345555677999999999864
No 6
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.46 E-value=34 Score=17.86 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=8.0
Q ss_pred HhcHHHHHHHH
Q 034109 69 NHCRASWVKHF 79 (103)
Q Consensus 69 ~~C~~SWVkyF 79 (103)
..|..-|.+||
T Consensus 37 ~Qcr~r~~~~f 47 (47)
T d1x41a1 37 EECEKHYMKYF 47 (47)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 45777788877
No 7
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.30 E-value=15 Score=22.39 Aligned_cols=12 Identities=0% Similarity=0.465 Sum_probs=10.2
Q ss_pred hhhHhhhhhcCC
Q 034109 32 DAFYDCLEKESN 43 (103)
Q Consensus 32 D~yF~CLD~~~i 43 (103)
|+||.||..|..
T Consensus 57 EeYF~tLp~nT~ 68 (81)
T d1ibxa_ 57 EDYFPSVPDNAE 68 (81)
T ss_dssp SSSCSSCCSCCC
T ss_pred HHHHhcCCCCcE
Confidence 579999999876
No 8
>d1t0ga_ d.120.1.2 (A:) Putative steroid binding protein AT2G24940 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=11.96 E-value=32 Score=21.59 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=11.5
Q ss_pred HhcHHHHHHHHHHHH
Q 034109 69 NHCRASWVKHFDRLY 83 (103)
Q Consensus 69 ~~C~~SWVkyF~r~~ 83 (103)
-.....|..+|.++|
T Consensus 87 ~~~L~~W~~~f~~kY 101 (109)
T d1t0ga_ 87 INTLNDWETKFEAKY 101 (109)
T ss_dssp HHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCC
Confidence 456789999998654
No 9
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.61 E-value=17 Score=22.45 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=10.2
Q ss_pred hhhHhhhhhcCC
Q 034109 32 DAFYDCLEKESN 43 (103)
Q Consensus 32 D~yF~CLD~~~i 43 (103)
|.||.||..|..
T Consensus 60 EeYF~tLp~nT~ 71 (87)
T d1c9fa_ 60 DDCFPGLPNDAE 71 (87)
T ss_dssp TTSCSSCCTTEE
T ss_pred HHHHhcCCCCCE
Confidence 579999999875
No 10
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.26 E-value=30 Score=20.49 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=15.2
Q ss_pred hhhHHHHHHHHHhcHHHHHHH
Q 034109 58 AECKALRAQFVNHCRASWVKH 78 (103)
Q Consensus 58 ~~C~~er~~FE~~C~~SWVky 78 (103)
..|+ ..|...|..+|.++
T Consensus 59 ~~Cg---H~FH~~Ci~~Wl~~ 76 (114)
T d1v87a_ 59 TKCS---HAFHLLCLLAMYCN 76 (114)
T ss_dssp SSSC---CEECHHHHHHHHHH
T ss_pred CCCC---ChhhHHHHHHHHHh
Confidence 4585 78999999999976
Done!