Query 034110
Match_columns 103
No_of_seqs 129 out of 1013
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:52:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01814 NTGP5 Ubiquitin-like N 100.0 5.2E-32 1.1E-36 182.3 9.0 99 4-102 2-100 (113)
2 PF13881 Rad60-SLD_2: Ubiquiti 100.0 2.5E-29 5.4E-34 169.5 12.0 96 5-100 1-96 (111)
3 cd01807 GDX_N ubiquitin-like d 99.8 3.1E-19 6.8E-24 111.3 8.2 71 8-94 2-74 (74)
4 cd01790 Herp_N Homocysteine-re 99.8 2.7E-19 5.8E-24 114.3 7.5 75 6-91 1-78 (79)
5 cd01793 Fubi Fubi ubiquitin-li 99.8 1E-18 2.2E-23 109.1 7.8 70 9-96 3-74 (74)
6 cd01794 DC_UbP_C dendritic cel 99.8 8.7E-19 1.9E-23 109.1 7.1 67 9-91 1-69 (70)
7 cd01797 NIRF_N amino-terminal 99.8 2E-18 4.2E-23 109.6 8.2 73 8-95 2-77 (78)
8 cd01810 ISG15_repeat2 ISG15 ub 99.8 3.9E-18 8.5E-23 106.4 7.5 72 9-96 1-74 (74)
9 cd01802 AN1_N ubiquitin-like d 99.8 6.3E-18 1.4E-22 112.5 8.6 76 5-96 26-103 (103)
10 cd01798 parkin_N amino-termina 99.7 5.3E-18 1.1E-22 104.6 7.2 68 9-92 1-70 (70)
11 PTZ00044 ubiquitin; Provisiona 99.7 9.5E-18 2.1E-22 104.5 8.3 73 8-96 2-76 (76)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.4E-17 3E-22 104.6 7.6 69 7-91 2-72 (73)
13 cd01800 SF3a120_C Ubiquitin-li 99.7 1.5E-17 3.2E-22 104.5 7.5 69 15-99 6-76 (76)
14 cd01806 Nedd8 Nebb8-like ubiq 99.7 4.9E-17 1.1E-21 100.6 8.3 73 8-96 2-76 (76)
15 cd01808 hPLIC_N Ubiquitin-like 99.7 5.4E-17 1.2E-21 100.4 7.8 71 7-92 1-71 (71)
16 cd01804 midnolin_N Ubiquitin-l 99.7 8.4E-17 1.8E-21 101.7 8.4 73 7-96 2-76 (78)
17 PF00240 ubiquitin: Ubiquitin 99.7 1.9E-16 4.1E-21 96.7 9.1 66 12-93 1-68 (69)
18 cd01803 Ubiquitin Ubiquitin. U 99.7 1.2E-16 2.5E-21 98.9 8.2 73 8-96 2-76 (76)
19 cd01809 Scythe_N Ubiquitin-lik 99.7 1.9E-16 4.2E-21 97.0 8.0 72 7-92 1-72 (72)
20 cd01805 RAD23_N Ubiquitin-like 99.7 2.9E-16 6.4E-21 97.8 8.3 74 8-93 2-75 (77)
21 cd01792 ISG15_repeat1 ISG15 ub 99.7 2.4E-16 5.3E-21 99.8 7.6 72 7-94 3-78 (80)
22 cd01796 DDI1_N DNA damage indu 99.7 1.9E-16 4.2E-21 98.4 6.7 65 9-89 1-69 (71)
23 cd01815 BMSC_UbP_N Ubiquitin-l 99.6 1.3E-15 2.7E-20 96.5 5.0 57 26-92 19-75 (75)
24 cd01812 BAG1_N Ubiquitin-like 99.6 5.6E-15 1.2E-19 90.5 7.4 67 7-90 1-69 (71)
25 KOG0005 Ubiquitin-like protein 99.6 1.5E-15 3.3E-20 92.4 4.4 69 8-90 2-70 (70)
26 KOG0004 Ubiquitin/40S ribosoma 99.6 3.1E-15 6.7E-20 105.6 4.4 76 11-100 5-80 (156)
27 cd01763 Sumo Small ubiquitin-r 99.6 5.9E-14 1.3E-18 90.3 9.5 77 4-96 9-87 (87)
28 KOG0010 Ubiquitin-like protein 99.5 1E-14 2.2E-19 117.9 7.0 75 6-95 15-89 (493)
29 KOG0003 Ubiquitin/60s ribosoma 99.5 2.7E-15 5.8E-20 100.8 0.3 71 12-96 6-76 (128)
30 TIGR00601 rad23 UV excision re 99.5 9.7E-14 2.1E-18 110.1 8.7 67 8-79 2-68 (378)
31 cd01813 UBP_N UBP ubiquitin pr 99.5 1.1E-13 2.5E-18 86.8 6.6 60 9-79 3-67 (74)
32 smart00213 UBQ Ubiquitin homol 99.5 3.2E-13 6.9E-18 80.2 6.8 61 7-78 1-63 (64)
33 cd01799 Hoil1_N Ubiquitin-like 99.4 1.5E-12 3.3E-17 82.0 7.3 70 7-91 3-74 (75)
34 cd01769 UBL Ubiquitin-like dom 99.3 9.7E-12 2.1E-16 74.6 7.0 67 11-91 2-68 (69)
35 KOG0011 Nucleotide excision re 99.3 1.2E-11 2.6E-16 96.3 6.7 67 8-80 2-68 (340)
36 cd01795 USP48_C USP ubiquitin- 99.1 1.4E-10 3.1E-15 77.0 6.3 59 21-94 18-79 (107)
37 KOG4248 Ubiquitin-like protein 99.1 1.2E-10 2.7E-15 100.7 6.8 73 8-97 4-78 (1143)
38 cd01789 Alp11_N Ubiquitin-like 99.1 1.1E-09 2.4E-14 70.1 8.6 71 7-92 2-81 (84)
39 PF11976 Rad60-SLD: Ubiquitin- 99.1 1E-09 2.2E-14 67.4 7.9 69 7-91 1-72 (72)
40 cd01801 Tsc13_N Ubiquitin-like 98.9 6.1E-09 1.3E-13 65.3 5.5 61 17-89 11-74 (77)
41 KOG0001 Ubiquitin and ubiquiti 98.9 4.4E-08 9.6E-13 57.9 8.8 69 10-94 3-73 (75)
42 PLN02560 enoyl-CoA reductase 98.8 2.1E-08 4.6E-13 77.8 7.5 73 8-97 2-86 (308)
43 cd01788 ElonginB Ubiquitin-lik 98.8 4.5E-08 9.7E-13 66.5 7.2 78 6-92 2-80 (119)
44 PF14560 Ubiquitin_2: Ubiquiti 98.6 2.8E-07 6.1E-12 58.8 8.2 69 7-90 2-81 (87)
45 PF10302 DUF2407: DUF2407 ubiq 98.6 1.3E-07 2.9E-12 62.3 6.0 60 9-74 3-65 (97)
46 KOG0006 E3 ubiquitin-protein l 98.5 2.8E-07 6E-12 72.4 5.6 73 7-94 3-78 (446)
47 cd00196 UBQ Ubiquitin-like pro 98.3 4.1E-06 8.9E-11 46.5 6.6 64 13-90 4-67 (69)
48 PF11543 UN_NPL4: Nuclear pore 98.1 9E-06 1.9E-10 51.8 5.1 66 5-79 3-73 (80)
49 PF00789 UBX: UBX domain; Int 98.0 0.00018 3.9E-09 45.0 9.8 74 3-89 3-80 (82)
50 KOG4495 RNA polymerase II tran 97.7 0.00014 2.9E-09 48.4 5.8 74 7-89 3-79 (110)
51 cd01770 p47_UBX p47-like ubiqu 97.7 0.00055 1.2E-08 43.3 8.3 67 5-78 3-72 (79)
52 cd01811 OASL_repeat1 2'-5' oli 97.5 0.0012 2.5E-08 42.0 7.7 63 7-78 1-68 (80)
53 KOG4583 Membrane-associated ER 97.4 0.0001 2.3E-09 58.2 2.3 81 5-94 8-89 (391)
54 cd01767 UBX UBX (ubiquitin reg 97.3 0.0028 6E-08 39.3 7.8 64 6-78 2-70 (77)
55 cd01774 Faf1_like2_UBX Faf1 ik 97.2 0.0038 8.2E-08 40.0 8.1 65 5-78 3-77 (85)
56 cd01772 SAKS1_UBX SAKS1-like U 97.1 0.0091 2E-07 37.5 8.6 65 5-78 3-72 (79)
57 PF08817 YukD: WXG100 protein 96.9 0.0037 8E-08 39.1 5.8 71 7-79 3-74 (79)
58 smart00166 UBX Domain present 96.9 0.013 2.8E-07 36.6 8.3 66 5-78 3-73 (80)
59 KOG1872 Ubiquitin-specific pro 96.9 0.0025 5.3E-08 52.2 6.1 64 14-92 9-75 (473)
60 COG5417 Uncharacterized small 96.5 0.027 5.8E-07 35.8 7.4 71 6-79 6-76 (81)
61 KOG1769 Ubiquitin-like protein 96.4 0.053 1.1E-06 36.0 8.8 76 5-96 19-96 (99)
62 PF13019 Telomere_Sde2: Telome 96.3 0.039 8.5E-07 39.6 8.2 82 7-97 1-89 (162)
63 cd01771 Faf1_UBX Faf1 UBX doma 96.1 0.093 2E-06 33.2 8.4 65 4-78 2-72 (80)
64 PF15044 CLU_N: Mitochondrial 95.9 0.022 4.7E-07 35.8 4.8 58 24-93 1-59 (76)
65 KOG3493 Ubiquitin-like protein 95.4 0.0071 1.5E-07 37.5 0.9 55 16-78 11-65 (73)
66 KOG0013 Uncharacterized conser 95.0 0.028 6E-07 42.1 3.3 65 6-78 145-210 (231)
67 COG5227 SMT3 Ubiquitin-like pr 94.5 0.32 7E-06 32.1 7.1 66 6-79 24-89 (103)
68 cd01773 Faf1_like1_UBX Faf1 ik 94.2 0.59 1.3E-05 29.9 7.6 64 5-78 4-73 (82)
69 KOG3206 Alpha-tubulin folding 94.0 0.26 5.6E-06 37.0 6.5 59 21-92 16-81 (234)
70 KOG2086 Protein tyrosine phosp 91.8 0.55 1.2E-05 37.9 5.9 68 4-78 303-373 (380)
71 PF11470 TUG-UBL1: GLUT4 regul 89.1 2.5 5.4E-05 25.8 5.9 55 14-78 4-60 (65)
72 cd00754 MoaD Ubiquitin domain 88.9 3.5 7.6E-05 24.8 6.8 56 16-79 14-69 (80)
73 TIGR01682 moaD molybdopterin c 86.0 3.3 7E-05 25.4 5.3 55 16-79 14-69 (80)
74 KOG1639 Steroid reductase requ 85.5 1.9 4E-05 33.4 4.6 57 19-78 14-71 (297)
75 PF08337 Plexin_cytopl: Plexin 85.1 6 0.00013 33.4 7.9 81 5-93 188-290 (539)
76 PF09379 FERM_N: FERM N-termin 84.3 6.9 0.00015 23.5 8.3 69 11-92 1-77 (80)
77 smart00666 PB1 PB1 domain. Pho 84.0 6.1 0.00013 23.9 5.9 46 7-61 2-47 (81)
78 PF00564 PB1: PB1 domain; Int 83.8 6 0.00013 24.0 5.8 47 7-61 2-48 (84)
79 PF10209 DUF2340: Uncharacteri 83.7 3.8 8.2E-05 28.2 5.1 57 22-78 20-100 (122)
80 TIGR01687 moaD_arch MoaD famil 82.7 9 0.0002 23.7 7.7 60 16-79 14-77 (88)
81 PF02597 ThiS: ThiS family; I 82.2 7.6 0.00016 23.1 5.7 52 21-79 15-66 (77)
82 PF08783 DWNN: DWNN domain; I 81.5 4.1 8.9E-05 25.5 4.3 32 9-40 1-33 (74)
83 smart00144 PI3K_rbd PI3-kinase 81.5 13 0.00027 24.5 7.0 69 5-74 16-87 (108)
84 PRK06437 hypothetical protein; 80.9 9.8 0.00021 22.9 6.3 51 13-79 6-56 (67)
85 PF14453 ThiS-like: ThiS-like 80.2 5.2 0.00011 23.9 4.3 42 14-71 5-46 (57)
86 smart00295 B41 Band 4.1 homolo 79.0 5.8 0.00013 27.6 5.0 35 5-40 2-36 (207)
87 PRK08364 sulfur carrier protei 78.9 9.2 0.0002 23.1 5.3 43 21-79 17-59 (70)
88 PLN02799 Molybdopterin synthas 78.8 7.5 0.00016 23.8 5.0 55 16-79 17-71 (82)
89 PF11069 DUF2870: Protein of u 77.4 5.9 0.00013 26.3 4.3 23 56-79 3-25 (98)
90 cd06407 PB1_NLP A PB1 domain i 77.0 9 0.0002 24.2 5.0 33 10-42 2-34 (82)
91 PF11620 GABP-alpha: GA-bindin 77.0 11 0.00024 24.5 5.3 68 21-99 6-73 (88)
92 PF12754 Blt1: Cell-cycle cont 75.1 0.94 2E-05 35.6 0.0 46 27-74 103-158 (309)
93 PF10790 DUF2604: Protein of U 74.2 3.6 7.8E-05 25.6 2.4 70 14-94 3-73 (76)
94 cd06406 PB1_P67 A PB1 domain i 73.1 14 0.00029 23.6 5.0 34 20-62 13-48 (80)
95 cd00565 ThiS ThiaminS ubiquiti 72.1 8.9 0.00019 22.6 3.8 51 14-79 4-54 (65)
96 cd06409 PB1_MUG70 The MUG70 pr 71.3 9.8 0.00021 24.5 4.1 34 8-42 2-35 (86)
97 cd06396 PB1_NBR1 The PB1 domai 68.1 15 0.00033 23.4 4.4 33 10-42 2-36 (81)
98 PF02824 TGS: TGS domain; Int 67.7 15 0.00032 21.5 4.1 30 9-41 1-30 (60)
99 cd01760 RBD Ubiquitin-like dom 64.0 27 0.00059 21.5 4.9 31 9-40 2-32 (72)
100 cd05992 PB1 The PB1 domain is 63.5 21 0.00045 21.4 4.3 33 8-42 2-35 (81)
101 PF06234 TmoB: Toluene-4-monoo 61.7 41 0.00089 21.7 7.3 69 8-78 5-76 (85)
102 TIGR01683 thiS thiamine biosyn 61.6 30 0.00066 20.2 5.2 51 14-79 3-53 (64)
103 KOG0012 DNA damage inducible p 60.8 21 0.00046 28.9 4.9 55 15-79 11-69 (380)
104 PF02192 PI3K_p85B: PI3-kinase 60.8 11 0.00023 23.8 2.7 20 21-40 3-22 (78)
105 cd06408 PB1_NoxR The PB1 domai 60.6 43 0.00092 21.6 5.9 34 9-42 3-36 (86)
106 KOG3391 Transcriptional co-rep 59.4 11 0.00024 26.6 2.8 31 60-96 109-140 (151)
107 KOG4250 TANK binding protein k 56.2 54 0.0012 28.9 6.9 45 10-64 318-364 (732)
108 KOG3439 Protein conjugation fa 55.7 63 0.0014 22.0 5.8 51 5-64 29-84 (116)
109 cd01787 GRB7_RA RA (RAS-associ 55.2 32 0.0007 22.1 4.2 59 7-73 3-68 (85)
110 smart00455 RBD Raf-like Ras-bi 53.3 49 0.0011 20.1 5.0 49 9-67 2-54 (70)
111 KOG0007 Splicing factor 3a, su 48.6 7.8 0.00017 30.5 0.7 46 15-70 291-339 (341)
112 smart00143 PI3K_p85B PI3-kinas 48.5 22 0.00049 22.5 2.7 20 21-40 3-22 (78)
113 COG5100 NPL4 Nuclear pore prot 47.5 88 0.0019 26.1 6.5 67 8-79 2-72 (571)
114 KOG4147 Uncharacterized conser 46.7 92 0.002 21.3 6.4 75 4-78 5-105 (127)
115 cd01817 RGS12_RBD Ubiquitin do 46.6 72 0.0016 20.0 5.2 46 10-65 3-52 (73)
116 PF02505 MCR_D: Methyl-coenzym 46.3 60 0.0013 23.2 4.8 53 6-73 67-120 (153)
117 PF11816 DUF3337: Domain of un 46.3 29 0.00062 27.1 3.6 52 23-74 253-312 (331)
118 COG4055 McrD Methyl coenzyme M 46.3 74 0.0016 22.8 5.2 51 10-73 77-128 (165)
119 PF14836 Ubiquitin_3: Ubiquiti 46.1 80 0.0017 20.4 7.2 52 19-78 15-72 (88)
120 TIGR02958 sec_mycoba_snm4 secr 44.9 1.5E+02 0.0032 24.4 7.6 77 8-93 4-81 (452)
121 PRK11130 moaD molybdopterin sy 44.6 72 0.0016 19.4 4.9 51 22-79 19-70 (81)
122 PF00794 PI3K_rbd: PI3-kinase 43.6 86 0.0019 20.0 5.7 69 4-74 14-85 (106)
123 cd01777 SNX27_RA Ubiquitin dom 42.8 75 0.0016 20.5 4.5 34 6-40 1-34 (87)
124 PF06200 tify: tify domain; I 42.6 27 0.00059 18.9 2.1 17 51-67 4-21 (36)
125 KOG1364 Predicted ubiquitin re 42.2 34 0.00073 27.6 3.4 64 8-78 279-347 (356)
126 KOG4261 Talin [Cytoskeleton] 40.8 48 0.001 29.7 4.3 68 6-79 3-76 (1003)
127 KOG2689 Predicted ubiquitin re 40.6 46 0.00099 26.1 3.8 35 5-40 209-243 (290)
128 cd06404 PB1_aPKC PB1 domain is 40.0 53 0.0011 21.1 3.4 34 9-42 1-34 (83)
129 KOG4146 Ubiquitin-like protein 39.4 1.1E+02 0.0025 20.2 5.8 36 5-40 3-48 (101)
130 cd06411 PB1_p51 The PB1 domain 39.3 71 0.0015 20.2 3.9 35 20-61 9-43 (78)
131 TIGR03260 met_CoM_red_D methyl 38.7 91 0.002 22.2 4.8 41 22-73 78-118 (150)
132 PF14533 USP7_C2: Ubiquitin-sp 38.7 1.5E+02 0.0033 21.5 7.2 50 20-73 36-90 (213)
133 PF08154 NLE: NLE (NUC135) dom 38.3 87 0.0019 18.6 6.1 56 6-66 1-59 (65)
134 PF14941 OAF: Transcriptional 37.2 61 0.0013 24.7 3.9 37 3-40 24-60 (240)
135 PF14847 Ras_bdg_2: Ras-bindin 36.6 99 0.0022 20.4 4.5 32 8-40 2-33 (105)
136 PF02120 Flg_hook: Flagellar h 36.6 74 0.0016 19.1 3.7 35 4-38 24-58 (85)
137 PF14732 UAE_UbL: Ubiquitin/SU 34.0 1E+02 0.0022 19.4 4.1 50 27-79 8-62 (87)
138 KOG3309 Ferredoxin [Energy pro 33.4 77 0.0017 22.8 3.7 29 5-34 42-70 (159)
139 KOG2561 Adaptor protein NUB1, 31.5 39 0.00084 28.5 2.2 50 22-78 54-103 (568)
140 PRK08053 sulfur carrier protei 30.9 1.2E+02 0.0025 17.8 4.5 52 13-79 4-55 (66)
141 PRK12385 fumarate reductase ir 30.8 1.7E+02 0.0036 21.9 5.5 41 1-41 1-48 (244)
142 cd01778 RASSF1_RA Ubiquitin-li 30.7 1.6E+02 0.0035 19.4 6.1 34 7-41 7-40 (96)
143 PRK05659 sulfur carrier protei 27.5 1.3E+02 0.0028 17.3 4.5 51 14-79 5-55 (66)
144 KOG2660 Locus-specific chromos 27.2 95 0.0021 24.8 3.7 47 22-74 168-215 (331)
145 PF00788 RA: Ras association ( 25.9 1.5E+02 0.0034 17.6 4.8 47 7-58 3-52 (93)
146 PF10407 Cytokin_check_N: Cdc1 25.7 72 0.0016 19.9 2.3 19 22-40 7-25 (73)
147 PF11816 DUF3337: Domain of un 25.6 65 0.0014 25.1 2.5 29 23-62 301-329 (331)
148 PF12436 USP7_ICP0_bdg: ICP0-b 25.3 2.6E+02 0.0057 20.8 5.7 47 5-58 175-223 (249)
149 PRK04966 hypothetical protein; 23.1 47 0.001 20.8 1.0 30 11-40 20-49 (72)
150 cd01768 RA RA (Ras-associating 22.7 1.9E+02 0.004 17.4 4.2 32 9-40 2-35 (87)
151 PTZ00380 microtubule-associate 22.4 1.2E+02 0.0027 20.7 3.1 43 23-72 46-88 (121)
152 PF02196 RBD: Raf-like Ras-bin 22.2 1.9E+02 0.0042 17.4 7.3 56 8-71 2-59 (71)
153 PRK01777 hypothetical protein; 21.3 2.4E+02 0.0052 18.2 6.9 65 6-79 5-69 (95)
154 PF12949 HeH: HeH/LEM domain; 21.0 66 0.0014 17.2 1.2 15 26-40 2-16 (35)
155 cd01775 CYR1_RA Ubiquitin doma 20.9 2.6E+02 0.0056 18.4 6.9 31 9-40 5-35 (97)
156 cd06410 PB1_UP2 Uncharacterize 20.4 2.5E+02 0.0055 18.1 5.1 28 14-42 20-47 (97)
157 smart00513 SAP Putative DNA-bi 20.4 1.1E+02 0.0023 15.7 2.0 16 27-42 3-19 (35)
158 PRK06488 sulfur carrier protei 20.2 1.9E+02 0.0042 16.6 5.4 50 14-79 5-54 (65)
No 1
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.97 E-value=5.2e-32 Score=182.29 Aligned_cols=99 Identities=69% Similarity=1.133 Sum_probs=94.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
++.|+||||+.+|.||.|+.|++++||++||++|+++||+++|++|..+++|||||+||+|+|+.||++|++..|++++.
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 68899999999999999999999999999999999999999999998999999999999999999999999999999988
Q ss_pred eEEEEEEecCCCCCCcCcC
Q 034110 84 VIIMHVVVQPSLAKTKTED 102 (103)
Q Consensus 84 ~~t~hlv~~~~~~~k~~~~ 102 (103)
++|||||+|++.+.++.++
T Consensus 82 ~~TmHvvlr~~~~~~~~~k 100 (113)
T cd01814 82 VITMHVVVQPPLADKKTEK 100 (113)
T ss_pred ceEEEEEecCCCCCccccc
Confidence 9999999999999887543
No 2
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.96 E-value=2.5e-29 Score=169.53 Aligned_cols=96 Identities=46% Similarity=0.919 Sum_probs=81.8
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
++|+|||++.+|.|+.++.|++++||++||+.|.++||.||++.|.+++.+||||+||+|+|+.||++|++..|+.++.+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 47999999999998999999999999999999999999999999999999999999999999999999999999887778
Q ss_pred EEEEEEecCCCCCCcC
Q 034110 85 IIMHVVVQPSLAKTKT 100 (103)
Q Consensus 85 ~t~hlv~~~~~~~k~~ 100 (103)
++|||+++++.+.+..
T Consensus 81 ~vmHlvvrp~~~~~~~ 96 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNE 96 (111)
T ss_dssp EEEEEEE-SSSSSSSS
T ss_pred EEEEEEecCCCCCccc
Confidence 9999999998776654
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.80 E-value=3.1e-19 Score=111.31 Aligned_cols=71 Identities=23% Similarity=0.395 Sum_probs=64.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
.|.||+.+|+. ..+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++ .
T Consensus 2 ~i~vk~~~G~~-~~l~v~~~~tV~~lK~~i~~~~gi~---------~~~q~L~~~G~~L~d~~~L~~~~i~~~------~ 65 (74)
T cd01807 2 FLTVKLLQGRE-CSLQVSEKESVSTLKKLVSEHLNVP---------EEQQRLLFKGKALADDKRLSDYSIGPN------A 65 (74)
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHHCCC---------HHHeEEEECCEECCCCCCHHHCCCCCC------C
Confidence 57888899965 479999999999999999988 55 999999999999999999999999998 6
Q ss_pred EEEEEecCC
Q 034110 86 IMHVVVQPS 94 (103)
Q Consensus 86 t~hlv~~~~ 94 (103)
++|++++++
T Consensus 66 ~l~l~~~~~ 74 (74)
T cd01807 66 KLNLVVRPP 74 (74)
T ss_pred EEEEEEcCC
Confidence 899999864
No 4
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.80 E-value=2.7e-19 Score=114.31 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=62.3
Q ss_pred eEEEEEEeCCCCee-eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccC--CCCCCCCC
Q 034110 6 LIDIKFRLYDGSDI-GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK--IPYGEVPG 82 (103)
Q Consensus 6 ~v~l~~~~~~g~~~-~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~--i~~g~~~~ 82 (103)
.++|.+|..+|..+ ..+++++++||++||++|++.+| ..| ++++|||||+||+|+|+.||++|. +.++
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~----~~~-~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~---- 71 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYP----SKP-LEQDQRLIYSGKLLPDHLKLRDVLRKQDEY---- 71 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcC----CCC-ChhHeEEEEcCeeccchhhHHHHhhcccCC----
Confidence 37899999999541 24555899999999999999865 122 279999999999999999999996 8776
Q ss_pred ceEEEEEEe
Q 034110 83 GVIIMHVVV 91 (103)
Q Consensus 83 ~~~t~hlv~ 91 (103)
.|||||+
T Consensus 72 --~tiHLV~ 78 (79)
T cd01790 72 --HMVHLVC 78 (79)
T ss_pred --ceEEEEe
Confidence 7899997
No 5
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.78 E-value=1e-18 Score=109.07 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=61.3
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (103)
|.+|. + ....+++++++||++||++|++. +| +++|||||+||.|+|+.+|++|+|.++ +|
T Consensus 3 i~vk~--~-~~~~l~v~~~~tV~~lK~~i~~~~gip---------~~~q~Li~~Gk~L~D~~tL~~~~i~~~------~t 64 (74)
T cd01793 3 LFVRA--Q-NTHTLEVTGQETVSDIKAHVAGLEGID---------VEDQVLLLAGVPLEDDATLGQCGVEEL------CT 64 (74)
T ss_pred EEEEC--C-CEEEEEECCcCcHHHHHHHHHhhhCCC---------HHHEEEEECCeECCCCCCHHHcCCCCC------CE
Confidence 44454 3 34579999999999999999988 55 999999999999999999999999988 78
Q ss_pred EEEEecCCCC
Q 034110 87 MHVVVQPSLA 96 (103)
Q Consensus 87 ~hlv~~~~~~ 96 (103)
+|+++++.++
T Consensus 65 l~l~~~l~GG 74 (74)
T cd01793 65 LEVAGRLLGG 74 (74)
T ss_pred EEEEEecCCC
Confidence 9999998874
No 6
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.78 E-value=8.7e-19 Score=109.12 Aligned_cols=67 Identities=28% Similarity=0.413 Sum_probs=61.0
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (103)
+++++.+|+.+ ++++++++||++||++|++. +| +++|||||+|+.|+|+.+|++|+|..+ .|
T Consensus 1 ~~vk~~~G~~~-~l~v~~~~TV~~lK~~I~~~~gi~---------~~~q~Li~~G~~L~D~~~l~~~~i~~~------~t 64 (70)
T cd01794 1 LKVRLSTGKDV-KLSVSSKDTVGQLKKQLQAAEGVD---------PCCQRWFFSGKLLTDKTRLQETKIQKD------YV 64 (70)
T ss_pred CeEEcCCCCEE-EEEECCcChHHHHHHHHHHHhCCC---------HHHeEEEECCeECCCCCCHHHcCCCCC------CE
Confidence 47899999665 79999999999999999988 66 999999999999999999999999977 78
Q ss_pred EEEEe
Q 034110 87 MHVVV 91 (103)
Q Consensus 87 ~hlv~ 91 (103)
+||++
T Consensus 65 v~~~~ 69 (70)
T cd01794 65 VQVIV 69 (70)
T ss_pred EEEEe
Confidence 99976
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.77 E-value=2e-18 Score=109.55 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=65.0
Q ss_pred EEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~-v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
.|.|++.+|..+..++ +++++||++||++|++. +| +++|||||+||+|+|+.+|++|+|.++
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~---------~~~QrLi~~Gk~L~D~~tL~~y~i~~~------ 66 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE---------PECQRLFYRGKQMEDGHTLFDYNVGLN------ 66 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC---------HHHeEEEeCCEECCCCCCHHHcCCCCC------
Confidence 5788999996644675 89999999999999988 55 999999999999999999999999999
Q ss_pred EEEEEEecCCC
Q 034110 85 IIMHVVVQPSL 95 (103)
Q Consensus 85 ~t~hlv~~~~~ 95 (103)
.++|+++++.+
T Consensus 67 ~~i~l~~~~~~ 77 (78)
T cd01797 67 DIIQLLVRQDP 77 (78)
T ss_pred CEEEEEEecCC
Confidence 68999998764
No 8
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.75 E-value=3.9e-18 Score=106.43 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=64.1
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (103)
|.||+.+|+. ..+++++++||++||++|++. +| +++|+|+|+|+.|+|+.+|++|+|.++ .+
T Consensus 1 i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~~gi~---------~~~q~L~~~G~~L~D~~tL~~~~i~~~------~t 64 (74)
T cd01810 1 ILVRNDKGRS-SIYEVQLTQTVATLKQQVSQRERVQ---------ADQFWLSFEGRPMEDEHPLGEYGLKPG------CT 64 (74)
T ss_pred CEEECCCCCE-EEEEECCcChHHHHHHHHHHHhCCC---------HHHeEEEECCEECCCCCCHHHcCCCCC------CE
Confidence 4578899954 579999999999999999988 55 999999999999999999999999998 68
Q ss_pred EEEEecCCCC
Q 034110 87 MHVVVQPSLA 96 (103)
Q Consensus 87 ~hlv~~~~~~ 96 (103)
+|++++..++
T Consensus 65 l~l~~~l~gg 74 (74)
T cd01810 65 VFMNLRLRGG 74 (74)
T ss_pred EEEEEEccCC
Confidence 9999987653
No 9
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.75 E-value=6.3e-18 Score=112.47 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=67.8
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+..+|.|+..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 26 ~~M~I~Vk~l~G~~~-~leV~~~~TV~~lK~kI~~~~gip---------~~~QrLi~~Gk~L~D~~tL~dy~I~~~---- 91 (103)
T cd01802 26 DTMELFIETLTGTCF-ELRVSPFETVISVKAKIQRLEGIP---------VAQQHLIWNNMELEDEYCLNDYNISEG---- 91 (103)
T ss_pred CCEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------hHHEEEEECCEECCCCCcHHHcCCCCC----
Confidence 357888899999654 69999999999999999988 55 999999999999999999999999998
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.|+|++++..++
T Consensus 92 --stL~l~~~l~GG 103 (103)
T cd01802 92 --CTLKLVLAMRGG 103 (103)
T ss_pred --CEEEEEEecCCC
Confidence 689999987664
No 10
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.75 E-value=5.3e-18 Score=104.62 Aligned_cols=68 Identities=24% Similarity=0.428 Sum_probs=61.4
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (103)
|.|++.+|.. .++++++++||++||++|++. +| +++|+|+|+|+.|+|+.+|++|+|.++ +|
T Consensus 1 i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~gi~---------~~~q~Li~~G~~L~d~~~l~~~~i~~~------st 64 (70)
T cd01798 1 VYVRTNTGHT-FPVEVDPDTDIKQLKEVVAKRQGVP---------PDQLRVIFAGKELRNTTTIQECDLGQQ------SI 64 (70)
T ss_pred CEEEcCCCCE-EEEEECCCChHHHHHHHHHHHHCCC---------HHHeEEEECCeECCCCCcHHHcCCCCC------CE
Confidence 4578889955 579999999999999999998 55 999999999999999999999999998 78
Q ss_pred EEEEec
Q 034110 87 MHVVVQ 92 (103)
Q Consensus 87 ~hlv~~ 92 (103)
+|++.|
T Consensus 65 l~l~~~ 70 (70)
T cd01798 65 LHAVRR 70 (70)
T ss_pred EEEEeC
Confidence 999875
No 11
>PTZ00044 ubiquitin; Provisional
Probab=99.75 E-value=9.5e-18 Score=104.48 Aligned_cols=73 Identities=25% Similarity=0.400 Sum_probs=65.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
+|.||..+|.. ..+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|++.++ .
T Consensus 2 ~i~vk~~~G~~-~~l~v~~~~tv~~lK~~i~~~~gi~---------~~~q~L~~~g~~L~d~~~l~~~~i~~~------~ 65 (76)
T PTZ00044 2 QILIKTLTGKK-QSFNFEPDNTVQQVKMALQEKEGID---------VKQIRLIYSGKQMSDDLKLSDYKVVPG------S 65 (76)
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHHCCC---------HHHeEEEECCEEccCCCcHHHcCCCCC------C
Confidence 57788999965 478999999999999999999 55 999999999999999999999999988 6
Q ss_pred EEEEEecCCCC
Q 034110 86 IMHVVVQPSLA 96 (103)
Q Consensus 86 t~hlv~~~~~~ 96 (103)
++|++++..++
T Consensus 66 ~i~l~~~~~gg 76 (76)
T PTZ00044 66 TIHMVLQLRGG 76 (76)
T ss_pred EEEEEEEccCC
Confidence 89999987653
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.73 E-value=1.4e-17 Score=104.63 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=62.0
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
+.|.|+...|+.+ .+++++++||++||++|++. +| +++|||||+|++|+|+.+|++|+|.+|
T Consensus 2 ~~i~vkt~~Gk~~-~~~v~~~~TV~~LK~~I~~~~~~~---------~~~qrLi~~Gk~L~D~~tL~~ygi~~~------ 65 (73)
T cd01791 2 IEVVCNDRLGKKV-RVKCNPDDTIGDLKKLIAAQTGTR---------PEKIVLKKWYTIFKDHISLGDYEIHDG------ 65 (73)
T ss_pred EEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------hHHEEEEeCCcCCCCCCCHHHcCCCCC------
Confidence 5788899889665 68999999999999999988 55 999999999999999999999999999
Q ss_pred EEEEEEe
Q 034110 85 IIMHVVV 91 (103)
Q Consensus 85 ~t~hlv~ 91 (103)
+++||.-
T Consensus 66 stv~l~~ 72 (73)
T cd01791 66 MNLELYY 72 (73)
T ss_pred CEEEEEe
Confidence 7899853
No 13
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.73 E-value=1.5e-17 Score=104.48 Aligned_cols=69 Identities=20% Similarity=0.396 Sum_probs=62.6
Q ss_pred CCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEec
Q 034110 15 DGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (103)
Q Consensus 15 ~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (103)
+| +++++++++++||++||++|++. +| ++.|+|+|+|+.|+|+.+|++|+|.+| .++|++++
T Consensus 6 ~g-~~~~l~v~~~~TV~~lK~~i~~~~gip---------~~~q~L~~~G~~L~d~~tL~~~~i~~g------~~l~v~~~ 69 (76)
T cd01800 6 NG-QMLNFTLQLSDPVSVLKVKIHEETGMP---------AGKQKLQYEGIFIKDSNSLAYYNLANG------TIIHLQLK 69 (76)
T ss_pred CC-eEEEEEECCCCcHHHHHHHHHHHHCCC---------HHHEEEEECCEEcCCCCcHHHcCCCCC------CEEEEEEe
Confidence 56 45689999999999999999988 65 999999999999999999999999999 68999999
Q ss_pred CCCCCCc
Q 034110 93 PSLAKTK 99 (103)
Q Consensus 93 ~~~~~k~ 99 (103)
+.++.||
T Consensus 70 ~~gg~~~ 76 (76)
T cd01800 70 ERGGRKK 76 (76)
T ss_pred cCCCcCC
Confidence 9887775
No 14
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.72 E-value=4.9e-17 Score=100.60 Aligned_cols=73 Identities=26% Similarity=0.431 Sum_probs=65.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
.|.|+..+|+.+ .+++++++||++||++|++. +| ++.|||+|+|+.|+|+.+|++|++.+| .
T Consensus 2 ~i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~g~~---------~~~qrL~~~g~~L~d~~tl~~~~i~~g------~ 65 (76)
T cd01806 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDDKTAADYKLEGG------S 65 (76)
T ss_pred EEEEEeCCCCEE-EEEECCCCCHHHHHHHHhHhhCCC---------hhhEEEEECCeEccCCCCHHHcCCCCC------C
Confidence 578889999664 79999999999999999988 55 999999999999999999999999999 6
Q ss_pred EEEEEecCCCC
Q 034110 86 IMHVVVQPSLA 96 (103)
Q Consensus 86 t~hlv~~~~~~ 96 (103)
++|++++..++
T Consensus 66 ~i~l~~~~~gg 76 (76)
T cd01806 66 VLHLVLALRGG 76 (76)
T ss_pred EEEEEEEccCC
Confidence 89999986553
No 15
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.71 E-value=5.4e-17 Score=100.44 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=61.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (103)
+.|.|+..+|. . .+++++++||++||++|++... +| +++|||+|+||.|+|+.+|++|++.+| ++
T Consensus 1 ~~i~vk~~~g~-~-~l~v~~~~TV~~lK~~I~~~~~-----i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~------st 65 (71)
T cd01808 1 IKVTVKTPKDK-E-EIEIAEDASVKDFKEAVSKKFK-----AN--QEQLVLIFAGKILKDTDTLTQHNIKDG------LT 65 (71)
T ss_pred CEEEEEcCCCC-E-EEEECCCChHHHHHHHHHHHhC-----CC--HHHEEEEECCeEcCCCCcHHHcCCCCC------CE
Confidence 35778888884 3 7899999999999999998831 22 999999999999999999999999988 68
Q ss_pred EEEEec
Q 034110 87 MHVVVQ 92 (103)
Q Consensus 87 ~hlv~~ 92 (103)
+|++++
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 999875
No 16
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.70 E-value=8.4e-17 Score=101.74 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=64.4
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
..|.|+...|+. .++++++++||++||++|++. +| +++|||+|+|+.|+|+ +|++|||.+|
T Consensus 2 m~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~~~~~~---------~~~qrL~~~Gk~L~d~-~L~~~gi~~~------ 64 (78)
T cd01804 2 MNLNIHSTTGTR-FDLSVPPDETVEGLKKRISQRLKVP---------KERLALLHRETRLSSG-KLQDLGLGDG------ 64 (78)
T ss_pred eEEEEEECCCCE-EEEEECCcCHHHHHHHHHHHHhCCC---------hHHEEEEECCcCCCCC-cHHHcCCCCC------
Confidence 468889999965 579999999999999999988 55 9999999999999999 9999999998
Q ss_pred EEEEEEecCCCC
Q 034110 85 IIMHVVVQPSLA 96 (103)
Q Consensus 85 ~t~hlv~~~~~~ 96 (103)
.++|++....++
T Consensus 65 ~~i~l~~~~~~~ 76 (78)
T cd01804 65 SKLTLVPTVEAG 76 (78)
T ss_pred CEEEEEeecccc
Confidence 679998876543
No 17
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.70 E-value=1.9e-16 Score=96.67 Aligned_cols=66 Identities=30% Similarity=0.491 Sum_probs=59.9
Q ss_pred EeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEE
Q 034110 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHV 89 (103)
Q Consensus 12 ~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hl 89 (103)
|+.+|+ .+.+++++++||.+||++|++. +| ++.|+|+|+|+.|+|+.+|++|+|.+| .+||+
T Consensus 1 k~~~g~-~~~~~v~~~~tV~~lK~~i~~~~~~~---------~~~~~L~~~G~~L~d~~tL~~~~i~~~------~~I~l 64 (69)
T PF00240_consen 1 KTLSGK-TFTLEVDPDDTVADLKQKIAEETGIP---------PEQQRLIYNGKELDDDKTLSDYGIKDG------STIHL 64 (69)
T ss_dssp EETTSE-EEEEEEETTSBHHHHHHHHHHHHTST---------GGGEEEEETTEEESTTSBTGGGTTSTT------EEEEE
T ss_pred CCCCCc-EEEEEECCCCCHHHhhhhcccccccc---------cccceeeeeeecccCcCcHHHcCCCCC------CEEEE
Confidence 467885 4589999999999999999999 55 999999999999999999999999999 78999
Q ss_pred EecC
Q 034110 90 VVQP 93 (103)
Q Consensus 90 v~~~ 93 (103)
++++
T Consensus 65 ~~k~ 68 (69)
T PF00240_consen 65 VIKP 68 (69)
T ss_dssp EESS
T ss_pred EEec
Confidence 8875
No 18
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.70 E-value=1.2e-16 Score=98.86 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=65.9
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
.|.|+..+|+.+ .+++++++||++||++|++. +| ++.|||+|+|+.|+|+.+|++|++.+| .
T Consensus 2 ~i~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~g~~---------~~~q~L~~~g~~L~d~~~L~~~~i~~~------~ 65 (76)
T cd01803 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (76)
T ss_pred EEEEEcCCCCEE-EEEECCcCcHHHHHHHHHHHhCCC---------HHHeEEEECCEECCCCCcHHHcCCCCC------C
Confidence 577888999665 68999999999999999998 66 999999999999999999999999988 6
Q ss_pred EEEEEecCCCC
Q 034110 86 IMHVVVQPSLA 96 (103)
Q Consensus 86 t~hlv~~~~~~ 96 (103)
++|++++..++
T Consensus 66 ~i~l~~~~~gg 76 (76)
T cd01803 66 TLHLVLRLRGG 76 (76)
T ss_pred EEEEEEEccCC
Confidence 89999997764
No 19
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.69 E-value=1.9e-16 Score=96.97 Aligned_cols=72 Identities=31% Similarity=0.502 Sum_probs=62.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (103)
+.|.++..+|.. ..+++++++||.+||++|++.+ ++| ++.|||+|+|+.|+|+.+|++|++.+| ++
T Consensus 1 i~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~~-----gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~ 66 (72)
T cd01809 1 IEIKVKTLDSQT-HTFTVEEEITVLDLKEKIAEEV-----GIP--VEQQRLIYSGRVLKDDETLSEYKVEDG------HT 66 (72)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHH-----CcC--HHHeEEEECCEECCCcCcHHHCCCCCC------CE
Confidence 467888899954 5799999999999999999882 122 999999999999999999999999998 68
Q ss_pred EEEEec
Q 034110 87 MHVVVQ 92 (103)
Q Consensus 87 ~hlv~~ 92 (103)
+|++.+
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 999864
No 20
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.68 E-value=2.9e-16 Score=97.81 Aligned_cols=74 Identities=28% Similarity=0.323 Sum_probs=61.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (103)
.|.++..+|.. +.+++++++||.+||++|++.+ +++..+++|||+|+|+.|+|+.+|++|+|.+| .++
T Consensus 2 ~i~vk~~~g~~-~~l~v~~~~TV~~lK~~i~~~~-----~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~------~~i 69 (77)
T cd01805 2 KITFKTLKQQT-FPIEVDPDDTVAELKEKIEEEK-----GCDYPPEQQKLIYSGKILKDDTTLEEYKIDEK------DFV 69 (77)
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHhh-----CCCCChhHeEEEECCEEccCCCCHHHcCCCCC------CEE
Confidence 57788899955 5799999999999999999982 12001999999999999999999999999998 467
Q ss_pred EEEecC
Q 034110 88 HVVVQP 93 (103)
Q Consensus 88 hlv~~~ 93 (103)
|++++.
T Consensus 70 ~~~~~~ 75 (77)
T cd01805 70 VVMVSK 75 (77)
T ss_pred EEEEec
Confidence 776653
No 21
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.67 E-value=2.4e-16 Score=99.80 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=64.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEE--EecCeecCCCCcccccCCCCCCCCC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrL--I~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
++|.|+..+|+.+ .+++++++||++||++|++. +| +++||| +|.|++|+|+.+|++|+|.+|
T Consensus 3 ~~i~Vk~~~G~~~-~~~v~~~~TV~~lK~~I~~~~~i~---------~~~qrL~~~~~G~~L~D~~tL~~~gi~~g---- 68 (80)
T cd01792 3 WDLKVKMLGGNEF-LVSLRDSMTVSELKQQIAQKIGVP---------AFQQRLAHLDSREVLQDGVPLVSQGLGPG---- 68 (80)
T ss_pred eEEEEEeCCCCEE-EEEcCCCCcHHHHHHHHHHHhCCC---------HHHEEEEeccCCCCCCCCCCHHHcCCCCC----
Confidence 6889999999665 68999999999999999988 55 999999 999999999999999999998
Q ss_pred ceEEEEEEecCC
Q 034110 83 GVIIMHVVVQPS 94 (103)
Q Consensus 83 ~~~t~hlv~~~~ 94 (103)
.++|++++..
T Consensus 69 --s~l~l~~~~~ 78 (80)
T cd01792 69 --STVLLVVQNC 78 (80)
T ss_pred --CEEEEEEEcc
Confidence 6789988754
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.67 E-value=1.9e-16 Score=98.38 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=57.2
Q ss_pred EEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCC-CcccccCCCCCCCCCce
Q 034110 9 IKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 9 l~~~~~-~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~~~~~ 84 (103)
|+|++. +|. ...+++++++||++||++|++. +| +++|||||+||.|+|+ .+|++|+|.+|
T Consensus 1 l~v~~~~~g~-~~~l~v~~~~TV~~lK~~I~~~~gip---------~~~q~Li~~Gk~L~D~~~~L~~~gi~~~------ 64 (71)
T cd01796 1 ITVYTARSET-TFSLDVDPDLELENFKALCEAESGIP---------ASQQQLIYNGRELVDNKRLLALYGVKDG------ 64 (71)
T ss_pred CEEEECCCCC-EEEEEECCcCCHHHHHHHHHHHhCCC---------HHHeEEEECCeEccCCcccHHHcCCCCC------
Confidence 568888 774 4589999999999999999988 55 9999999999999887 68999999999
Q ss_pred EEEEE
Q 034110 85 IIMHV 89 (103)
Q Consensus 85 ~t~hl 89 (103)
.++||
T Consensus 65 ~~l~l 69 (71)
T cd01796 65 DLVVL 69 (71)
T ss_pred CEEEE
Confidence 56776
No 23
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.60 E-value=1.3e-15 Score=96.49 Aligned_cols=57 Identities=28% Similarity=0.443 Sum_probs=48.1
Q ss_pred CcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEec
Q 034110 26 SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (103)
Q Consensus 26 ~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (103)
.++||.+||++|++.++ +.+| .+++|||||+||+|+|+.||++|+|.+| .++||+.+
T Consensus 19 ~~~TV~~LK~kI~~~~~---egi~-~~dqQrLIy~GKiL~D~~TL~dygI~~g------stlhLv~~ 75 (75)
T cd01815 19 GGYQVSTLKQLIAAQLP---DSLP-DPELIDLIHCGRKLKDDQTLDFYGIQSG------STIHILRK 75 (75)
T ss_pred ccCcHHHHHHHHHHhhc---cCCC-ChHHeEEEeCCcCCCCCCcHHHcCCCCC------CEEEEEeC
Confidence 46799999999999853 2221 1889999999999999999999999999 68999753
No 24
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.59 E-value=5.6e-15 Score=90.48 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=58.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
|.|+++.. | ....+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|++.+|
T Consensus 1 i~i~vk~~-g-~~~~i~v~~~~tv~~lK~~i~~~~gi~---------~~~q~L~~~g~~l~d~~~L~~~~i~~g------ 63 (71)
T cd01812 1 IRVRVKHG-G-ESHDLSISSQATFGDLKKMLAPVTGVE---------PRDQKLIFKGKERDDAETLDMSGVKDG------ 63 (71)
T ss_pred CEEEEEEC-C-EEEEEEECCCCcHHHHHHHHHHhhCCC---------hHHeEEeeCCcccCccCcHHHcCCCCC------
Confidence 45777776 6 45689999999999999999988 65 999999999999999999999999998
Q ss_pred EEEEEE
Q 034110 85 IIMHVV 90 (103)
Q Consensus 85 ~t~hlv 90 (103)
.++|++
T Consensus 64 ~~l~v~ 69 (71)
T cd01812 64 SKVMLL 69 (71)
T ss_pred CEEEEe
Confidence 567775
No 25
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.5e-15 Score=92.44 Aligned_cols=69 Identities=25% Similarity=0.457 Sum_probs=61.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (103)
.|++++.+|+.| .++++|+++|.++|++|++. |++| |.+|||||+||++.|+.|-++|++.-| +.+
T Consensus 2 ~iKvktLt~KeI-eidIep~DkverIKErvEEk-----eGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~G------SVl 67 (70)
T KOG0005|consen 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGG------SVL 67 (70)
T ss_pred eeeEeeeccceE-EEeeCcchHHHHHHHHhhhh-----cCCC--chhhhhhhccccccccccHHHhhhccc------eeE
Confidence 478888999887 79999999999999999998 3344 999999999999999999999999977 678
Q ss_pred EEE
Q 034110 88 HVV 90 (103)
Q Consensus 88 hlv 90 (103)
|++
T Consensus 68 Hlv 70 (70)
T KOG0005|consen 68 HLV 70 (70)
T ss_pred eeC
Confidence 975
No 26
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.1e-15 Score=105.60 Aligned_cols=76 Identities=24% Similarity=0.379 Sum_probs=65.3
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 034110 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (103)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (103)
+....|+.+ .+++++++||..+|++|++. |.|| +++|||||+|+.|+|+.+|+||+|+.. .|+||+
T Consensus 5 Vk~l~~kti-~~eve~~~ti~~~Kakiq~~-----egIp--~dqqrlifag~qLedgrtlSDY~Iqke------stl~l~ 70 (156)
T KOG0004|consen 5 VKTLTGKTI-TLEVEANDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLV 70 (156)
T ss_pred hhhccccce-eeeecccccHHHHHHhhhcc-----cCCC--chhhhhhhhhcccccCCcccccccccc------ceEEEE
Confidence 344566444 58999999999999999966 4455 999999999999999999999999977 899999
Q ss_pred ecCCCCCCcC
Q 034110 91 VQPSLAKTKT 100 (103)
Q Consensus 91 ~~~~~~~k~~ 100 (103)
++..++++|.
T Consensus 71 l~l~Gg~kkr 80 (156)
T KOG0004|consen 71 LRLRGGAKKR 80 (156)
T ss_pred EEecCCcccc
Confidence 9999887774
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.55 E-value=5.9e-14 Score=90.31 Aligned_cols=77 Identities=16% Similarity=0.323 Sum_probs=69.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
...|.|+++..+|+.+ .+++.+++++..||+.+++. +| +++|||+|.|+.|+|+.|+++|++.+|
T Consensus 9 ~~~i~I~v~~~~g~~~-~~~v~~~~~l~~l~~~y~~~~gi~---------~~~~rf~f~G~~L~~~~T~~~l~m~d~--- 75 (87)
T cd01763 9 SEHINLKVKGQDGNEV-FFKIKRSTPLKKLMEAYCQRQGLS---------MNSVRFLFDGQRIRDNQTPDDLGMEDG--- 75 (87)
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCCHHHHHHHHHHHHhCCC---------ccceEEEECCeECCCCCCHHHcCCCCC---
Confidence 5789999999999665 68999999999999999988 55 899999999999999999999999999
Q ss_pred CceEEEEEEecCCCC
Q 034110 82 GGVIIMHVVVQPSLA 96 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~ 96 (103)
.++|++++..++
T Consensus 76 ---d~I~v~l~l~GG 87 (87)
T cd01763 76 ---DEIEVMLEQTGG 87 (87)
T ss_pred ---CEEEEEEecccC
Confidence 579999887764
No 28
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.55 E-value=1e-14 Score=117.93 Aligned_cols=75 Identities=25% Similarity=0.354 Sum_probs=65.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
.+.|+++..+++ +.+.|..+.||.+||+.|+..+- . .+++++|||+||+|+|++||..|+|.+| .
T Consensus 15 ~irV~Vkt~~dk--~~~~V~~~ssV~qlKE~I~~~f~-----a--~~dqlvLIfaGrILKD~dTL~~~gI~Dg------~ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKDK--YEVNVASDSSVLQLKELIAQRFG-----A--PPDQLVLIYAGRILKDDDTLKQYGIQDG------H 79 (493)
T ss_pred eeEEEEecCCcc--eeEecccchHHHHHHHHHHHhcC-----C--ChhHeeeeecCccccChhhHHHcCCCCC------c
Confidence 367777777773 57899999999999999999932 1 1999999999999999999999999999 8
Q ss_pred EEEEEecCCC
Q 034110 86 IMHVVVQPSL 95 (103)
Q Consensus 86 t~hlv~~~~~ 95 (103)
|||||++...
T Consensus 80 TvHLVik~~~ 89 (493)
T KOG0010|consen 80 TVHLVIKSQP 89 (493)
T ss_pred EEEEEeccCC
Confidence 9999998663
No 29
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=2.7e-15 Score=100.82 Aligned_cols=71 Identities=24% Similarity=0.396 Sum_probs=61.8
Q ss_pred EeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEe
Q 034110 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (103)
Q Consensus 12 ~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (103)
+...|+.+ .++++|++||.+||++|... +++| +++|+|||+||+|+|+.||++|+|... .|+|++.
T Consensus 6 ~~~~GKT~-~le~EpS~ti~~vKA~i~~~-----~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~------~Tl~~~~ 71 (128)
T KOG0003|consen 6 KTLTGKTI-TLEVEPSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKE------STLHLVL 71 (128)
T ss_pred EEeeCceE-EEEecccchHHHHHHHhccc-----cCCC--HHHHHHHhcccccccCCcccccCccch------hhhhhhH
Confidence 34578665 58999999999999999877 3344 999999999999999999999999976 7899999
Q ss_pred cCCCC
Q 034110 92 QPSLA 96 (103)
Q Consensus 92 ~~~~~ 96 (103)
+..++
T Consensus 72 rL~GG 76 (128)
T KOG0003|consen 72 RLRGG 76 (128)
T ss_pred HHhcC
Confidence 98876
No 30
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.50 E-value=9.7e-14 Score=110.05 Aligned_cols=67 Identities=33% Similarity=0.429 Sum_probs=57.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.|+||+.+|+. +.+++++++||.+||++|++... .+.+| +++|||||+||+|+|+.+|++|+|.+++
T Consensus 2 kItVKtl~g~~-~~IeV~~~~TV~dLK~kI~~~~g--~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~ 68 (378)
T TIGR00601 2 TLTFKTLQQQK-FKIDMEPDETVKELKEKIEAEQG--KDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKD 68 (378)
T ss_pred EEEEEeCCCCE-EEEEeCCcChHHHHHHHHHHhhC--CCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCC
Confidence 68889999955 57999999999999999998721 11133 9999999999999999999999999985
No 31
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.48 E-value=1.1e-13 Score=86.84 Aligned_cols=60 Identities=23% Similarity=0.154 Sum_probs=51.6
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEe---cCeecCCCCcccccCCCCCC
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS---SGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~---~Gk~L~D~~tL~~~~i~~g~ 79 (103)
|.++. +| ..+++++++++||++||++|++. +| +++||||| .|+.|+|+.+|++|+|.+|+
T Consensus 3 i~vk~-~g-~~~~v~v~~~~Tv~~lK~~i~~~tgvp---------~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~ 67 (74)
T cd01813 3 VIVKW-GG-QEYSVTTLSEDTVLDLKQFIKTLTGVL---------PERQKLLGLKVKGKPAEDDVKISALKLKPNT 67 (74)
T ss_pred EEEEE-CC-EEEEEEECCCCCHHHHHHHHHHHHCCC---------HHHEEEEeecccCCcCCCCcCHHHcCCCCCC
Confidence 34443 44 44689999999999999999998 66 99999997 99999999999999999983
No 32
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.45 E-value=3.2e-13 Score=80.23 Aligned_cols=61 Identities=30% Similarity=0.495 Sum_probs=53.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (103)
++|+++..+ .. ..+++++++||++||++|++. +| ++.|+|+|+|+.|.|+.+|++|++.+|
T Consensus 1 ~~i~vk~~~-~~-~~~~v~~~~tv~~lk~~i~~~~~~~---------~~~~~L~~~g~~L~d~~tL~~~~i~~~ 63 (64)
T smart00213 1 IELTVKTLD-GT-ITLEVKPSDTVSELKEKIAELTGIP---------VEQQRLIYKGKVLEDDRTLADYNIQDG 63 (64)
T ss_pred CEEEEEECC-ce-EEEEECCCCcHHHHHHHHHHHHCCC---------HHHEEEEECCEECCCCCCHHHcCCcCC
Confidence 357788887 33 579999999999999999988 55 889999999999999999999999876
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.40 E-value=1.5e-12 Score=82.03 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=54.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecC-CCCcccccCCC-CCCCCCce
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE-NNKTVGQCKIP-YGEVPGGV 84 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~-D~~tL~~~~i~-~g~~~~~~ 84 (103)
|+|.=+...|..+ .+++++++||++||++|++. +++| +++||| |.|+.|. |+.+|++|++. +|
T Consensus 3 ~~~~~~~~~~~t~-~l~v~~~~TV~~lK~kI~~~-----~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g------ 67 (75)
T cd01799 3 VSVEDAQSHTVTI-WLTVRPDMTVAQLKDKVFLD-----YGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNG------ 67 (75)
T ss_pred EEEeccccCCCeE-EEEECCCCcHHHHHHHHHHH-----HCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCC------
Confidence 3444455666454 69999999999999999988 2233 999999 9999984 77999999998 55
Q ss_pred EEEEEEe
Q 034110 85 IIMHVVV 91 (103)
Q Consensus 85 ~t~hlv~ 91 (103)
.++||-+
T Consensus 68 ~~~~l~~ 74 (75)
T cd01799 68 DSAFLYI 74 (75)
T ss_pred CEEEEEe
Confidence 5678753
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.31 E-value=9.7e-12 Score=74.61 Aligned_cols=67 Identities=31% Similarity=0.480 Sum_probs=55.3
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 034110 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (103)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (103)
++..+|..+ .+.+++++||++||++|+..+. +| ++.|+|+|+|+.|+|+.+|++|++.++ .++|+.
T Consensus 2 v~~~~~~~~-~~~~~~~~ti~~lK~~i~~~~~-----~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~------~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTF-ELEVSPDDTVAELKAKIAAKEG-----VP--PEQQRLIYAGKILKDDKTLSDYGIQDG------STLHLV 67 (69)
T ss_pred eEccCCCEE-EEEECCCChHHHHHHHHHHHHC-----cC--hHHEEEEECCcCCCCcCCHHHCCCCCC------CEEEEE
Confidence 344567554 6899999999999999999832 22 899999999999999999999999988 457765
Q ss_pred e
Q 034110 91 V 91 (103)
Q Consensus 91 ~ 91 (103)
.
T Consensus 68 ~ 68 (69)
T cd01769 68 L 68 (69)
T ss_pred E
Confidence 3
No 35
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.26 E-value=1.2e-11 Score=96.26 Aligned_cols=67 Identities=25% Similarity=0.373 Sum_probs=58.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCC
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (103)
.|+||+..|..+ .+++.|+.||..||.+|+...- .+ .| ++.|+|||+||+|.|+.|+.+|++.+++|
T Consensus 2 ~lt~KtL~q~~F-~iev~Pe~tV~evK~kIet~~g--~d-yP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~f 68 (340)
T KOG0011|consen 2 KLTVKTLKQQTF-TIEVKPEDTVVEVKKKIETEKG--PD-YP--AEQQKLIYSGKILKDETTVGEYKVKEKKF 68 (340)
T ss_pred eeEeeeccCcee-EeecCcchhHHHHHHHHHhccC--CC-Cc--hhhheeeecceeccCCcchhhhccccCce
Confidence 589999999665 8999999999999999998811 11 23 99999999999999999999999999976
No 36
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.14 E-value=1.4e-10 Score=77.04 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=52.3
Q ss_pred eEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeec-CCCCcccccCCCCCCCCCceEEEEEEecCC
Q 034110 21 PFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQCKIPYGEVPGGVIIMHVVVQPS 94 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L-~D~~tL~~~~i~~g~~~~~~~t~hlv~~~~ 94 (103)
.++|++++||.+||.+|+.. .| |+.|+|+|.|+.| +|..||++|||..+ ++++|.+..+
T Consensus 18 ~L~V~~~~TVg~LK~lImQ~f~V~---------P~dQkL~~dG~~L~DDsrTLssyGv~sg------Svl~LlideP 79 (107)
T cd01795 18 ALLVSANQTLKELKIQIMHAFSVA---------PFDQNLSIDGKILSDDCATLGTLGVIPE------SVILLKADEP 79 (107)
T ss_pred eEEeCccccHHHHHHHHHHHhcCC---------cccceeeecCceeccCCccHHhcCCCCC------CEEEEEecCC
Confidence 58999999999999999999 55 9999999999999 57799999999988 6788887644
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.2e-10 Score=100.70 Aligned_cols=73 Identities=22% Similarity=0.440 Sum_probs=66.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
+|++++.|. .+..+.+...+||.++|++|+++ || .+-|||||+||+|.|++++.+|+| +| -
T Consensus 4 ~v~vktld~-r~~t~~ig~q~ti~~~~d~~r~~~ni~---------s~~qr~i~~grvl~~~k~vq~~~v-dg------k 66 (1143)
T KOG4248|consen 4 NVLVKTLDS-RTRTFIIGAQMTIKEFKDHIRASVNIP---------SEKQRLIYQGRVLQDDKKVQEYNV-DG------K 66 (1143)
T ss_pred ceeeeeccc-ceeEEEechHHHHHHHHHHHHHhcccc---------cccceeeecceeeccchhhhhccC-CC------e
Confidence 488999999 56789999999999999999999 66 999999999999999999999999 67 5
Q ss_pred EEEEEecCCCCC
Q 034110 86 IMHVVVQPSLAK 97 (103)
Q Consensus 86 t~hlv~~~~~~~ 97 (103)
++|||-|++++.
T Consensus 67 ~~hlverppp~~ 78 (1143)
T KOG4248|consen 67 VIHLVERPPPQT 78 (1143)
T ss_pred EEEeeccCCCCc
Confidence 799999977653
No 38
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=99.09 E-value=1.1e-09 Score=70.12 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=54.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEE-EecCe-----ec-CCCCcccccCCCC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKL-ISSGK-----IL-ENNKTVGQCKIPY 77 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrL-I~~Gk-----~L-~D~~tL~~~~i~~ 77 (103)
+.|.+............+++++||.+||++++.. .| ++.||| +|.|+ .| +|+.+|++|++.+
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~---------~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~d 72 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTP---------ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDD 72 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCC---------ccceEEEEEcCCCCeEeecCCCccEeeeccCCC
Confidence 3444444332233345599999999999999988 55 999999 58999 46 8889999999999
Q ss_pred CCCCCceEEEEEEec
Q 034110 78 GEVPGGVIIMHVVVQ 92 (103)
Q Consensus 78 g~~~~~~~t~hlv~~ 92 (103)
| .+||++=.
T Consensus 73 g------~~IhVvD~ 81 (84)
T cd01789 73 G------CRIHVIDV 81 (84)
T ss_pred C------CEEEEEeC
Confidence 9 78998643
No 39
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.08 E-value=1e-09 Score=67.38 Aligned_cols=69 Identities=32% Similarity=0.442 Sum_probs=58.4
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCC-cceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAV-TEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~-~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
++|+++..+|+. ..+.+.+++++..|++.+++. +| + +.++|+|.|+.|++++|++++++.+|
T Consensus 1 I~i~v~~~~~~~-~~~~v~~~~~~~~l~~~~~~~~~i~---------~~~~~~l~fdG~~L~~~~T~~~~~ied~----- 65 (72)
T PF11976_consen 1 ITIKVRSQDGKE-IKFKVKPTTTVSKLIEKYCEKKGIP---------PEESIRLIFDGKRLDPNDTPEDLGIEDG----- 65 (72)
T ss_dssp EEEEEEETTSEE-EEEEEETTSCCHHHHHHHHHHHTTT---------T-TTEEEEETTEEE-TTSCHHHHT-STT-----
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHhhCCC---------ccceEEEEECCEEcCCCCCHHHCCCCCC-----
Confidence 568888899964 478999999999999999988 55 6 99999999999999999999999999
Q ss_pred eEEEEEEe
Q 034110 84 VIIMHVVV 91 (103)
Q Consensus 84 ~~t~hlv~ 91 (103)
.++|+++
T Consensus 66 -d~Idv~I 72 (72)
T PF11976_consen 66 -DTIDVII 72 (72)
T ss_dssp -EEEEEE-
T ss_pred -CEEEEEC
Confidence 5688763
No 40
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.86 E-value=6.1e-09 Score=65.34 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=46.5
Q ss_pred CeeeeEEe-CCcchHHHHHHHHHhhCCCCCccCCCCCcceEE--EecCeecCCCCcccccCCCCCCCCCceEEEEE
Q 034110 17 SDIGPFRY-SSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPGGVIIMHV 89 (103)
Q Consensus 17 ~~~~~~~v-~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrL--I~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hl 89 (103)
+.+..+++ +++.||.+||+.|++.++ ..+ ++.||| ++.|+.|.|+++|+++++.+| .++|+
T Consensus 11 k~~~~~~~~~~~aTV~dlk~~i~~~~~----~~~--~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g------~~lyv 74 (77)
T cd01801 11 KPIGKLKVSSGDATIADLKKLIAKSSP----QLT--VNRQSLRLEPKGKSLKDDDTLVDLGVGAG------ATLYV 74 (77)
T ss_pred CceeecccCCCCccHHHHHHHHHHHcC----CCC--cceeEEEeCCCCcccCCcccHhhcCCCCC------CEEEE
Confidence 34443444 488999999999998732 111 888888 699999999999999999888 56664
No 41
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.85 E-value=4.4e-08 Score=57.89 Aligned_cols=69 Identities=29% Similarity=0.493 Sum_probs=58.8
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 034110 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (103)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (103)
.+....|+.+ .+.+.++.+|..+|.+|+.. +| ...|+|.|.|+.|+|+.+|.+|+|..+ .++
T Consensus 3 ~~~~~~gk~~-~~~~~~~~~i~~~k~~i~~~~~~~---------~~~q~~~~~~~~l~d~~~l~~~~i~~~------~~~ 66 (75)
T KOG0001|consen 3 FVKTLDGKTI-TLEVSPSDTIEVVKAKIRDKEGIP---------VDQQRLIFGGKPLEDGRTLADYNIQEG------STL 66 (75)
T ss_pred EEEecCCCEE-EEEecCCCHHHHHHHHHHhhcCCC---------CeeEEEEECCEECcCCCcHHHhCCCCC------CEE
Confidence 3444677554 68999999999999999988 55 899999999999999999999999988 678
Q ss_pred EEEecCC
Q 034110 88 HVVVQPS 94 (103)
Q Consensus 88 hlv~~~~ 94 (103)
|++.+..
T Consensus 67 ~l~~~~~ 73 (75)
T KOG0001|consen 67 HLVLSLR 73 (75)
T ss_pred EEEEecC
Confidence 9887654
No 42
>PLN02560 enoyl-CoA reductase
Probab=98.79 E-value=2.1e-08 Score=77.82 Aligned_cols=73 Identities=18% Similarity=0.262 Sum_probs=57.9
Q ss_pred EEEEEeCCCCee--eeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCcceEEEec---C----eecCCCCcccccCC
Q 034110 8 DIKFRLYDGSDI--GPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISS---G----KILENNKTVGQCKI 75 (103)
Q Consensus 8 ~l~~~~~~g~~~--~~~~v~~~~tV~~lK~~i~~~---~p~~~e~~p~~~~~qrLI~~---G----k~L~D~~tL~~~~i 75 (103)
.|.++..+|+.+ ..+++++++||++||+.|++. ++ +++|||++. | +.|+|+++|+++++
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~---------~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv 72 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYY---------PSRQRLTLPLPPGKTRPTVLDDSKSLKDYGL 72 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCC---------hhheEEEEecCCCCcCccccCCCCCHHhcCC
Confidence 356667788777 578999999999999999987 34 899999983 4 48999999999999
Q ss_pred CCCCCCCceEEEEEEecCCCCC
Q 034110 76 PYGEVPGGVIIMHVVVQPSLAK 97 (103)
Q Consensus 76 ~~g~~~~~~~t~hlv~~~~~~~ 97 (103)
.+| ++++ ++-.|++
T Consensus 73 ~~g------stLy--~kDLGpQ 86 (308)
T PLN02560 73 GDG------GTVV--FKDLGPQ 86 (308)
T ss_pred CCC------ceEE--EEeCCCc
Confidence 988 4554 5544443
No 43
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.75 E-value=4.5e-08 Score=66.46 Aligned_cols=78 Identities=18% Similarity=0.237 Sum_probs=58.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCC-CCce
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGV 84 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-~~~~ 84 (103)
++.+++|-..- .| -+++.+++||.+||++|+.-+- .| +++|||+..+.+|+|++||++||+..... +..+
T Consensus 2 dvFlmIrR~KT-Ti-F~dakes~tVlelK~~iegI~k-----~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~p 72 (119)
T cd01788 2 DVFLMIRRHKT-TI-FTDAKESTTVYELKRIVEGILK-----RP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAP 72 (119)
T ss_pred ceEEEEEecce-EE-EeecCCcccHHHHHHHHHHHhc-----CC--hhHheeecCceeecccccHHHcCccccccccCCC
Confidence 45666665544 34 3699999999999999998732 22 99999997788999999999999965333 3344
Q ss_pred EEEEEEec
Q 034110 85 IIMHVVVQ 92 (103)
Q Consensus 85 ~t~hlv~~ 92 (103)
.++-|.++
T Consensus 73 A~vgLa~r 80 (119)
T cd01788 73 ATVGLAFR 80 (119)
T ss_pred CeEEEEEe
Confidence 66777766
No 44
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.65 E-value=2.8e-07 Score=58.85 Aligned_cols=69 Identities=22% Similarity=0.337 Sum_probs=52.1
Q ss_pred EEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEec----C----eecCCCCcccccCC
Q 034110 7 IDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISS----G----KILENNKTVGQCKI 75 (103)
Q Consensus 7 v~l~~~~~~g~-~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~----G----k~L~D~~tL~~~~i 75 (103)
|.|.+.....+ ......+++++||.+||++|+.. +| ++.|||.+. | ...+|..+|.+|++
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~---------~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~ 72 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIP---------PSDMRLQLKSDKDDSKIEELDDDDATLGSYGI 72 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS----------TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCC---------cccEEEEEEecCCCccccccCCCccEeecCCC
Confidence 45555554432 24578999999999999999999 55 999999776 1 13378899999999
Q ss_pred CCCCCCCceEEEEEE
Q 034110 76 PYGEVPGGVIIMHVV 90 (103)
Q Consensus 76 ~~g~~~~~~~t~hlv 90 (103)
.+| .++|++
T Consensus 73 ~dg------~~i~V~ 81 (87)
T PF14560_consen 73 KDG------MRIHVV 81 (87)
T ss_dssp STT------EEEEEE
T ss_pred CCC------CEEEEE
Confidence 999 788875
No 45
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.61 E-value=1.3e-07 Score=62.34 Aligned_cols=60 Identities=25% Similarity=0.420 Sum_probs=46.4
Q ss_pred EEEEeCCC-CeeeeEEeC--CcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccC
Q 034110 9 IKFRLYDG-SDIGPFRYS--SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK 74 (103)
Q Consensus 9 l~~~~~~g-~~~~~~~v~--~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 74 (103)
|.+|+.++ .| .++++. .++||..||..|.+.+|.+ ++-..+||||+||+|.|...|+..-
T Consensus 3 l~IRFs~sipD-l~L~I~~~~~~Tv~~LK~lIR~~~p~~-----~s~~rLRlI~~Gr~L~d~t~l~~~l 65 (97)
T PF10302_consen 3 LTIRFSDSIPD-LPLDIPSPNTTTVAWLKQLIRERLPPE-----PSRRRLRLIYAGRLLNDHTDLSSEL 65 (97)
T ss_pred EEEEECCCCCC-ceeecCCCCcccHHHHHHHHHhhcCCC-----CccccEEeeecCcccCccchhhhhh
Confidence 44455553 34 367887 8899999999999998632 3477899999999999999887643
No 46
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.8e-07 Score=72.42 Aligned_cols=73 Identities=23% Similarity=0.403 Sum_probs=59.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
+-|.|+-.+.+...+++|+.+++|.+||+.++.+ +| ++++|+||+||.|.|+.|+..|.+...
T Consensus 3 ~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp---------~D~L~viFaGKeLs~~ttv~~cDL~qq------ 67 (446)
T KOG0006|consen 3 VLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVP---------ADQLRVIFAGKELSNDTTVQNCDLSQQ------ 67 (446)
T ss_pred EEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCC---------hhheEEEEeccccccCceeeccccccc------
Confidence 4567765444445789999999999999999988 66 999999999999999999998887755
Q ss_pred EEEEEE-ecCC
Q 034110 85 IIMHVV-VQPS 94 (103)
Q Consensus 85 ~t~hlv-~~~~ 94 (103)
+.+|++ +||.
T Consensus 68 s~~hi~~lRP~ 78 (446)
T KOG0006|consen 68 SATHIMLLRPW 78 (446)
T ss_pred chhhhhccCcc
Confidence 457776 5554
No 47
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.32 E-value=4.1e-06 Score=46.55 Aligned_cols=64 Identities=25% Similarity=0.342 Sum_probs=51.8
Q ss_pred eCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 034110 13 LYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (103)
Q Consensus 13 ~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (103)
+.+|.. ..+.+.+.+||.+||+.|.+.++ . .++.++|.+.|..+.+...+.++++..+ .++|+.
T Consensus 4 ~~~~~~-~~~~~~~~~tv~~l~~~i~~~~~-----~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~i~~~ 67 (69)
T cd00196 4 LNDGKT-VELLVPSGTTVADLKEKLAKKLG-----L--PPEQQRLLVNGKILPDSLTLEDYGLQDG------DELVLV 67 (69)
T ss_pred ecCCCE-EEEEcCCCCcHHHHHHHHHHHHC-----c--ChHHeEEEECCeECCCCCcHHHcCCCCC------CEEEEE
Confidence 345633 46888899999999999999963 1 2899999999999999998888999888 456654
No 48
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.08 E-value=9e-06 Score=51.79 Aligned_cols=66 Identities=23% Similarity=0.334 Sum_probs=38.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEec---Ceec--CCCCcccccCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---GKIL--ENNKTVGQCKIPYGE 79 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~---Gk~L--~D~~tL~~~~i~~g~ 79 (103)
+.+-||||-.+|.. -+++++++|+.+|+++|++.++ +| .+.|.|... ...| .++.+|+++||..||
T Consensus 3 ~~milRvrS~dG~~--Rie~~~~~t~~~L~~kI~~~l~-----~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 3 SSMILRVRSKDGMK--RIEVSPSSTLSDLKEKISEQLS-----IP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp ---EEEEE-SSEEE--EEEE-TTSBHHHHHHHHHHHS----------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred ccEEEEEECCCCCE--EEEcCCcccHHHHHHHHHHHcC-----CC--CcceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence 45779999999943 4799999999999999999943 11 445555221 1234 578999999999995
No 49
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.99 E-value=0.00018 Score=44.97 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=54.8
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE--ecCeecCCC--CcccccCCCCC
Q 034110 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILENN--KTVGQCKIPYG 78 (103)
Q Consensus 3 ~~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~D~--~tL~~~~i~~g 78 (103)
++..+.|+||+.||+.+ .-.|.+++||.+|.+.|....... .....+|+ |-.+.|.++ .||+++++..+
T Consensus 3 ~~~~~~I~vRlpdG~~l-~~~F~~~~tl~~l~~~v~~~~~~~------~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~ 75 (82)
T PF00789_consen 3 ESDVVRIQVRLPDGSRL-QRRFPKSDTLQDLYDFVESQLFSP------EESDFELITAFPRRELTDEDSKTLEEAGLLPS 75 (82)
T ss_dssp TSSEEEEEEEETTSTEE-EEEEETTSBHHHHHHHHHHHHHCT------TTSSEEEEESSSTEECCSTTTSBTCCCTTSSC
T ss_pred CCCEEEEEEECCCCCEE-EEEECCcchHHHHHHHHHHhcCCC------CCccEEEEeCCCCcCCCccccccHHHhcCCCC
Confidence 36789999999999765 579999999999999999882200 02226665 556777444 69999988866
Q ss_pred CCCCceEEEEE
Q 034110 79 EVPGGVIIMHV 89 (103)
Q Consensus 79 ~~~~~~~t~hl 89 (103)
.+++|
T Consensus 76 ------~~l~v 80 (82)
T PF00789_consen 76 ------ATLIV 80 (82)
T ss_dssp ------EEEEE
T ss_pred ------eEEEE
Confidence 56665
No 50
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.70 E-value=0.00014 Score=48.37 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=52.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecC--eecCCCCcccccCCCCCCC-CCc
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYGEV-PGG 83 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~G--k~L~D~~tL~~~~i~~g~~-~~~ 83 (103)
+.+++|=... .| -+..+++.||-+||.+++.-+- .| ++.|||.... ..|+|++||++||...... +..
T Consensus 3 ~f~~VrR~kt-ti-f~da~es~tV~elK~~l~gi~~-----~P--vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q~ 73 (110)
T KOG4495|consen 3 VFLRVRRHKT-TI-FTDAKESSTVFELKRKLEGILK-----RP--VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQA 73 (110)
T ss_pred eeeeeeecce-eE-EeecCccccHHHHHHHHHHHHh-----CC--CcchheeecCHHHHhhccchhhhccccccccccCC
Confidence 4556654443 33 4799999999999999998732 23 9999998743 4789999999998765543 344
Q ss_pred eEEEEE
Q 034110 84 VIIMHV 89 (103)
Q Consensus 84 ~~t~hl 89 (103)
+.++-|
T Consensus 74 pA~vgL 79 (110)
T KOG4495|consen 74 PATVGL 79 (110)
T ss_pred Cceeee
Confidence 455544
No 51
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.68 E-value=0.00055 Score=43.32 Aligned_cols=67 Identities=22% Similarity=0.308 Sum_probs=51.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE--ecCeec-CCCCcccccCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL-ENNKTVGQCKIPYG 78 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI--~~Gk~L-~D~~tL~~~~i~~g 78 (103)
....|.||+.||+.+ ...|..++||++|.+.|..+.|.. ......|. |=.|.| +++.||+++|+...
T Consensus 3 p~t~iqiRlpdG~r~-~~rF~~~~tv~~l~~~v~~~~~~~------~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 3 PTTSIQIRLADGKRL-VQKFNSSHRVSDVRDFIVNARPEF------AARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred CeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHhCCCC------CCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 467899999999766 579999999999999999885411 12445564 557777 55899999999854
No 52
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.50 E-value=0.0012 Score=42.00 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=51.4
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEec---C--eecCCCCcccccCCCCC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPYG 78 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~g 78 (103)
|+|++.-.++++. .+.++|...|..+|++|...|- -+..|||-|+ | ..|.+..+|++|||=.+
T Consensus 1 iqVtV~q~g~~dl-~l~vnPy~pI~k~K~kI~~~~~--------~~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~ 68 (80)
T cd01811 1 IQVTVEQTGYSDW-ILRVNPYSPIRKIKEKIRRSRN--------CSGLQRLSFQEPGGERQLLSSRKSLADYGIFSK 68 (80)
T ss_pred CEEEeeecCCCce-EEEeCCcchHHHHHHHHHHhhC--------cccceEEEeecCCcccccccccccHhhhcceec
Confidence 4677788888776 5899999999999999999953 1668999885 2 26699999999998644
No 53
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.0001 Score=58.22 Aligned_cols=81 Identities=19% Similarity=0.156 Sum_probs=56.5
Q ss_pred ceEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 5 ELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 5 ~~v~l~~~~~~g~~-~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
..|++-++..+.+. ...+..+-.+||++||.+++..+|.+ |. ..+|||||+||.|.|...|++.-++...
T Consensus 8 ~~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPsk----pl-~~dqrliYsgkllld~qcl~d~lrkq~k---- 78 (391)
T KOG4583|consen 8 FPVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSK----PL-ELDQRLIYSGKLLLDHQCLTDWLRKQVK---- 78 (391)
T ss_pred cceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCC----Cc-hhhHHHHhhccccccchhHHHHHHHHHH----
Confidence 44555565555521 12466678899999999999999943 32 6789999999999999999985544331
Q ss_pred eEEEEEEecCC
Q 034110 84 VIIMHVVVQPS 94 (103)
Q Consensus 84 ~~t~hlv~~~~ 94 (103)
-.+.|||+...
T Consensus 79 ~Hv~hlvcnsk 89 (391)
T KOG4583|consen 79 EHVKHLVCNSK 89 (391)
T ss_pred HHHHHHhcCCC
Confidence 13456665543
No 54
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.30 E-value=0.0028 Score=39.32 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=48.6
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE--ecCeecC---CCCcccccCCCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILE---NNKTVGQCKIPYG 78 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~~g 78 (103)
...|+||+.+|+.+ .-.|..++||.+|.+-|...... .....|+ |-.|.+. ++.||+++|+..+
T Consensus 2 ~t~i~iRlpdG~~~-~~~F~~~~tl~~l~~fv~~~~~~--------~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s 70 (77)
T cd01767 2 TTKIQIRLPDGKRL-EQRFNSTHKLSDVRDFVESNGPP--------AEPFTLMTSFPRRVLTDLDYELTLQEAGLVNE 70 (77)
T ss_pred cEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHcCCC--------CCCEEEEeCCCCccCCCCCccCcHHHcCCccc
Confidence 46899999999665 57999999999999999987431 3344554 3456674 5899999999843
No 55
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.24 E-value=0.0038 Score=40.04 Aligned_cols=65 Identities=12% Similarity=0.289 Sum_probs=51.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecC--eecC--------CCCcccccC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE--------NNKTVGQCK 74 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~G--k~L~--------D~~tL~~~~ 74 (103)
..+.|.||+.+|+.+ .-.|..++||++|.+-|... + ..+....|+++= |.+. .+.||+++|
T Consensus 3 ~~~~I~iRlp~G~Rl-~rrF~~~~tl~~l~~fv~~~-~-------~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaG 73 (85)
T cd01774 3 DTVKIVFKLPNGTRV-ERRFLFTQSLRVIHDFLFSL-K-------ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAG 73 (85)
T ss_pred ceEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhC-C-------CCCCcEEEecCCCCccccccccccCcCCCCHHHcC
Confidence 468999999999765 57999999999999999643 2 126677887766 7775 367999999
Q ss_pred CCCC
Q 034110 75 IPYG 78 (103)
Q Consensus 75 i~~g 78 (103)
+...
T Consensus 74 L~~s 77 (85)
T cd01774 74 LSNS 77 (85)
T ss_pred CCCc
Confidence 9855
No 56
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.09 E-value=0.0091 Score=37.48 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=48.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE--ecCeecCC---CCcccccCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYG 78 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~D---~~tL~~~~i~~g 78 (103)
....|+||+.+|+.+ ...|+.++|+.+|.+.|...... .....|+ |-.|.+.+ +.||.++++...
T Consensus 3 ~~~~i~iRlp~G~~~-~~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Ps 72 (79)
T cd01772 3 TETRIQIRLLDGTTL-KQTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPS 72 (79)
T ss_pred cEEEEEEECCCCCEE-EEEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCCc
Confidence 467899999999655 57999999999999999987431 1334443 44567743 589999998855
No 57
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.94 E-value=0.0037 Score=39.11 Aligned_cols=71 Identities=14% Similarity=0.150 Sum_probs=46.4
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE-ecCeecCCCCcccccCCCCCC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-SSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI-~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
+.|++...+|. ...+.+....+|++|...|.+.+..+....+ .....+|. -.|..|.++.||++++|.+|+
T Consensus 3 ~rVtv~~~~~~-~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~-~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 3 CRVTVDAGNGR-QVDLALPADVPVAELIPELVELLGLPGDDPP-GHGQWVLARAGGRPLDPDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEE-TT---EEEEEEETTSBTTHHHHHHHHHS---S---T-T-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred EEEEEEcCCCc-EEEEEcCCCCcHHHHHHHHHHHhCCccCCCC-CcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence 56677666553 4578999999999999999998431111111 12257777 789999999999999999994
No 58
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.94 E-value=0.013 Score=36.58 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=47.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE--ecCeecCC---CCcccccCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYG 78 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~D---~~tL~~~~i~~g 78 (103)
....|.||+.+|+.+ ...|.+++||.+|.+.|......+ ....+|+ |-.|.|.+ +.||.++++..+
T Consensus 3 ~~~~I~iRlPdG~ri-~~~F~~~~tl~~v~~~v~~~~~~~-------~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~ 73 (80)
T smart00166 3 DQCRLQIRLPDGSRL-VRRFPSSDTLRTVYEFVSAALTDG-------NDPFTLNSPFPRRTFTKDDYSKTLLELALLPS 73 (80)
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHcccCC-------CCCEEEEeCCCCcCCccccccCCHHHCCCCCc
Confidence 567899999999765 579999999999999995543211 2334553 45567753 479999997644
No 59
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.0025 Score=52.23 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=53.8
Q ss_pred CCCCeeeeEE-eCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 034110 14 YDGSDIGPFR-YSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (103)
Q Consensus 14 ~~g~~~~~~~-v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (103)
.-|++.++++ ++.+.|+..+|++|.+- .| |+.||+.+.|+.|.|+--+...+|+.| .++|+.
T Consensus 9 KW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~---------PeRQKv~vKGg~a~dd~~~~al~iKpn------~~lmMm 73 (473)
T KOG1872|consen 9 KWGGKKYPVETLSTDETPSVLKAQLFALTGVP---------PERQKVMVKGGLAKDDVDWGALQIKPN------ETLMMM 73 (473)
T ss_pred eecCccccceeccCCCchHHHHHHHHHhcCCC---------ccceeEEEecccccccccccccccCCC------CEEEee
Confidence 3344567777 99999999999999988 55 999999999999999988888999988 678875
Q ss_pred ec
Q 034110 91 VQ 92 (103)
Q Consensus 91 ~~ 92 (103)
-.
T Consensus 74 Gt 75 (473)
T KOG1872|consen 74 GT 75 (473)
T ss_pred cc
Confidence 44
No 60
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.52 E-value=0.027 Score=35.82 Aligned_cols=71 Identities=17% Similarity=0.319 Sum_probs=55.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.|++-|+.-+|+. +.+.++.--+|..|-..+++... .+-.+.+-..+|..-.+++|.+++.|.+|+|++||
T Consensus 6 kVTvD~t~y~g~~-yDLrl~d~~pikklIdivwe~~k--is~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD 76 (81)
T COG5417 6 KVTVDFTNYNGGT-YDLRLPDYLPIKKLIDIVWESLK--ISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGD 76 (81)
T ss_pred EEEEEeEecCCce-EEEeccccchHHHHHHHHHHHhh--ccccccCCCEEEEeccceEecCCceEEeccccCCC
Confidence 5778888888854 57899999899888888877611 01122234689999999999999999999999996
No 61
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.053 Score=36.02 Aligned_cols=76 Identities=16% Similarity=0.306 Sum_probs=57.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.|.|++.=-+| ....+.+.-++....|...-.++ .+ .+++|++|.|+.+.+.+|-++++..+||
T Consensus 19 ~hi~LKV~gqd~-~~~~Fkikr~t~LkKLM~aYc~r~Gl~---------~~s~RFlFdG~rI~~~~TP~~L~mEd~D--- 85 (99)
T KOG1769|consen 19 EHINLKVKGQDG-SVVVFKIKRHTPLKKLMKAYCERQGLS---------MNSLRFLFDGQRIRETHTPADLEMEDGD--- 85 (99)
T ss_pred ceEEEEEecCCC-CEEEEEeecCChHHHHHHHHHHHcCCc---------cceEEEEECCcCcCCCCChhhhCCcCCc---
Confidence 345555554445 44468999999999988777766 44 8999999999999999999999999995
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.|-++....++
T Consensus 86 ---~Iev~~~q~gG 96 (99)
T KOG1769|consen 86 ---EIEVVQEQTGG 96 (99)
T ss_pred ---EEEEEeecccC
Confidence 35554444433
No 62
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.32 E-value=0.039 Score=39.60 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=52.9
Q ss_pred EEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcc-eEEEec-Ceec--CCCCcccccCCCCCC
Q 034110 7 IDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISS-GKIL--ENNKTVGQCKIPYGE 79 (103)
Q Consensus 7 v~l~~~~~~g~---~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~-qrLI~~-Gk~L--~D~~tL~~~~i~~g~ 79 (103)
|+|=+...+|- ....+.+.+++||.+|+.+|.+..| .| ... +-|.+. |+.| .++..++.+.-...+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~-----~~--~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP-----IP--SSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC-----CC--ccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 35556667883 3346888999999999999999965 11 333 335443 4455 555666655443332
Q ss_pred CCCceEEEEEEecCCCCC
Q 034110 80 VPGGVIIMHVVVQPSLAK 97 (103)
Q Consensus 80 ~~~~~~t~hlv~~~~~~~ 97 (103)
. ..++++|+++..|++
T Consensus 74 ~--~~~~l~l~~rl~GGK 89 (162)
T PF13019_consen 74 S--DFITLRLSLRLRGGK 89 (162)
T ss_pred C--CceEEEEEEeccCCC
Confidence 1 347899999888764
No 63
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.11 E-value=0.093 Score=33.17 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=49.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCcceEEE--ecCeecC---CCCcccccCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKILE---NNKTVGQCKIPY 77 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~-~p~~~e~~p~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~~ 77 (103)
++.+.|.||+.+|+.+ .-.|..++++.+|-.-|... .+ +..-+|+ |=-|.+. -+.||.++|+..
T Consensus 2 ~~~~~i~iRlP~G~r~-~rrF~~t~~L~~l~~fv~~~~~~---------~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p 71 (80)
T cd01771 2 EPISKLRVRTPSGDFL-ERRFLGDTPLQVLLNFVASKGYP---------IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP 71 (80)
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCC---------CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence 5789999999999654 57999999999999999876 33 3445553 3345553 357999999875
Q ss_pred C
Q 034110 78 G 78 (103)
Q Consensus 78 g 78 (103)
.
T Consensus 72 ~ 72 (80)
T cd01771 72 Q 72 (80)
T ss_pred C
Confidence 5
No 64
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.95 E-value=0.022 Score=35.81 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=44.9
Q ss_pred eCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccC-CCCCCCCCceEEEEEEecC
Q 034110 24 YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK-IPYGEVPGGVIIMHVVVQP 93 (103)
Q Consensus 24 v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~-i~~g~~~~~~~t~hlv~~~ 93 (103)
|+++++|.+|++.|... | +. +.-....|.++|+.|+|...|++.. +.+| .+++++..|
T Consensus 1 v~~~d~v~dvrq~L~~~-~---~t--~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~------~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES-P---ET--CYLTNFSLEHNGQRLDDFVELSEIEGIKDG------CVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhC-c---cc--cceeEEEEEECCCccCCchhhhhhhCCCCC------cEEEEEecC
Confidence 46789999999999987 1 01 1278889999999999999888764 6655 678887654
No 65
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.0071 Score=37.53 Aligned_cols=55 Identities=20% Similarity=0.253 Sum_probs=43.4
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 034110 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (103)
Q Consensus 16 g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (103)
|+.. -+.+.+++||+++|..|+++.-.. ++.+.|---+.+++|.-+|++|.|.+|
T Consensus 11 GKKV-RvKCn~dDtiGD~KKliaaQtGT~-------~~kivl~k~~~i~kd~I~L~dyeihdg 65 (73)
T KOG3493|consen 11 GKKV-RVKCNTDDTIGDLKKLIAAQTGTR-------PEKIVLKKWYTIFKDHITLSDYEIHDG 65 (73)
T ss_pred CceE-EEEeCCcccccCHHHHHHHhhCCC-------hhHhHHHhhhhhhhcccceeeEEeccC
Confidence 5554 378899999999999999994311 555666556668899999999999988
No 66
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=0.028 Score=42.12 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=51.8
Q ss_pred eEEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 034110 6 LIDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (103)
Q Consensus 6 ~v~l~~~~~-~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (103)
+..++.++. .++++ -+....-+||.++|..+.+.=- . ++-.|++.|+|++|-|..-|++|+|..|
T Consensus 145 e~~lk~rlTtT~~d~-~lta~~~Dtv~eik~~L~Aaeg-----~--D~~sQrif~Sg~~l~dkt~LeEc~iekg 210 (231)
T KOG0013|consen 145 EPILKLRLTTTREDF-WLTAPHYDTVGEIKRALRAAEG-----V--DPLSQRIFFSGGVLVDKTDLEECKIEKG 210 (231)
T ss_pred CcchHHHhhhhhhhe-eecccCcCcHHHHHHHHHHhhc-----c--chhhheeeccCCceeccccceeeeecCC
Confidence 455666666 55444 5777888999999999998822 1 1779999999999999999999999977
No 67
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=94.53 E-value=0.32 Score=32.08 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=51.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.|.|++.=.+|..+ -+.+-.+++-..|-...+++.- .+.+++|++|.|+-.+-++|-.+++..++|
T Consensus 24 hinLkvv~qd~tel-fFkiKktT~f~klm~af~~rqG-------K~m~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 24 HINLKVVDQDGTEL-FFKIKKTTTFKKLMDAFSRRQG-------KNMSSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred ccceEEecCCCCEE-EEEEeccchHHHHHHHHHHHhC-------cCcceeEEEEcceecCCCCChhhcCCccch
Confidence 34455444466555 4899999999988887777733 348999999999999999999999988775
No 68
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.17 E-value=0.59 Score=29.90 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=47.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCcceEEE--ecCeec---CCCCcccccCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPYG 78 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~-~p~~~e~~p~~~~~qrLI--~~Gk~L---~D~~tL~~~~i~~g 78 (103)
..-.|.||+.+|..+ .-.+..+.++.+|-..|... .+ ++..+|+ |=-|.+ +-+.||.++|+...
T Consensus 4 ~~t~i~vRlP~G~r~-~rrF~~~~~L~~v~~fv~~~g~~---------~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~ 73 (82)
T cd01773 4 PKARLMLRYPDGKRE-QIALPEQAKLLALVRHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCPQ 73 (82)
T ss_pred CeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCC---------CCCEEEecCCCCcccCCcccCCCHHHcCCCCC
Confidence 456799999999554 67999999999999999875 33 4555554 233444 34589999998866
No 69
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.26 Score=37.02 Aligned_cols=59 Identities=20% Similarity=0.312 Sum_probs=44.6
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEE-EecC-----eec-CCCCcccccCCCCCCCCCceEEEEEEec
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSG-----KIL-ENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrL-I~~G-----k~L-~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (103)
...++++.||.++|.+|+-..- ..++.++| +|.| ..| +++..|..|+..+| ..+|++=.
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~~G-------~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg------~rihviD~ 81 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELLTG-------TEAESMELELYDGDDKKVSALSNEDADLGFYKVEDG------LRIHVIDS 81 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhhhC-------CCccceEEEEEcCCCceeeeccCCcccccccCCCCc------eEEEEEec
Confidence 3577899999999999998832 12788888 6766 245 66788888998888 78887543
No 70
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=91.75 E-value=0.55 Score=37.87 Aligned_cols=68 Identities=21% Similarity=0.335 Sum_probs=50.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE--ecCeec-CCCCcccccCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL-ENNKTVGQCKIPYG 78 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI--~~Gk~L-~D~~tL~~~~i~~g 78 (103)
+.+-+|.||+.+|..+ ...|+-+-||.+|+..|...-|++- ...+-|+ |=-|.| +|++||+++++.+.
T Consensus 303 ~PtTsIQIRLanG~Rl-V~~fN~sHTv~DIR~fI~~aRp~~~------~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 303 EPTTSIQIRLANGTRL-VLKFNHSHTVSDIREFIDTARPGDS------STYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred CCcceEEEEecCCcee-eeeccCcccHHHHHHHHHhcCCCCc------CCceeeeecCCCcccCCcchhHHhccchhh
Confidence 3567899999999776 5799999999999999998866331 2233333 334666 67899999999865
No 71
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=89.10 E-value=2.5 Score=25.78 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=36.3
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (103)
.++ ....+.+.|++++.+|=+..-.. +. +++=.|.|++|.|+-+.++.-.|+.+|
T Consensus 4 ~~~-rr~~vkvtp~~~l~~VL~eac~k~~l~---------~~~~~L~h~~k~ldlslp~R~snL~n~ 60 (65)
T PF11470_consen 4 YNF-RRFKVKVTPNTTLNQVLEEACKKFGLD---------PSSYDLKHNNKPLDLSLPFRLSNLPNN 60 (65)
T ss_dssp TTS--EEEE---TTSBHHHHHHHHHHHTT-----------GGG-EEEETTEEESSS-BHHHH---SS
T ss_pred cCC-cEEEEEECCCCCHHHHHHHHHHHcCCC---------ccceEEEECCEEeccccceeecCCCCC
Confidence 455 33468999999999887766666 44 778899999999999999999999988
No 72
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=88.94 E-value=3.5 Score=24.81 Aligned_cols=56 Identities=14% Similarity=0.265 Sum_probs=37.3
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 16 g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
|.....++++...||.+|.+.+.+++|.. ... ......+..+|+...+ +..+.+||
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~-~~~--~~~~~~v~vNg~~v~~-----~~~l~~gD 69 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGL-LEE--LLARVRIAVNGEYVRL-----DTPLKDGD 69 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchH-HHh--hhhcEEEEECCeEcCC-----CcccCCCC
Confidence 43334567777899999999999988721 000 1346677788888863 34567774
No 73
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=86.01 E-value=3.3 Score=25.43 Aligned_cols=55 Identities=15% Similarity=0.310 Sum_probs=37.1
Q ss_pred CCeeeeEEeCCc-chHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 16 GSDIGPFRYSSA-STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 16 g~~~~~~~v~~~-~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
|.....++++.. .||.+|.+.|.+.+|. ... ....+.+..+|+...++ .-+++||
T Consensus 14 g~~~~~~~~~~~~~tv~~L~~~L~~~~p~-l~~---~~~~~~v~vn~~~v~~~-----~~l~dgD 69 (80)
T TIGR01682 14 GTDEETLELPDESTTVGELKEHLAKEGPE-LAA---SRGQVMVAVNEEYVTDD-----ALLNEGD 69 (80)
T ss_pred CCCeEEEECCCCCcCHHHHHHHHHHhCch-hhh---hccceEEEECCEEcCCC-----cCcCCCC
Confidence 433345678766 8999999999999772 111 13456777888888753 4566774
No 74
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=85.47 E-value=1.9 Score=33.44 Aligned_cols=57 Identities=19% Similarity=0.137 Sum_probs=40.1
Q ss_pred eeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 034110 19 IGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (103)
Q Consensus 19 ~~~~~v~~~~tV~~lK~~i~~~-~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (103)
+.....+.+.||.++++.+.+. .- -.+..+ ....|+=-.|+.|.|+++|++++...|
T Consensus 14 ~~~~~~s~~~ti~d~~~~~~~~~~k-~~~~~~--r~tlr~e~kgkpl~~~s~l~e~~~~s~ 71 (297)
T KOG1639|consen 14 IKEKDLSGSETIDDLLKAISAKNLK-ITPYRI--RLTLRVEPKGKPLIDNSKLQEYGDGSG 71 (297)
T ss_pred eeeecCCCCCcHHHHHHHHHHhhhc-cCccch--hheeeccCCCccccchhHHHHhccCCC
Confidence 3345677888999999888776 11 001122 445555667999999999999998876
No 75
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=85.13 E-value=6 Score=33.40 Aligned_cols=81 Identities=20% Similarity=0.400 Sum_probs=48.6
Q ss_pred ceEEEEEEeCC-CCeeeeEEeCCcchHHHHHHHHHhh-CCCC--CccCCCCCcceEEEe-c---Ce-ecCCCC-------
Q 034110 5 ELIDIKFRLYD-GSDIGPFRYSSASTVDMLKQRIVSD-WPKG--KTIVPKAVTEIKLIS-S---GK-ILENNK------- 68 (103)
Q Consensus 5 ~~v~l~~~~~~-g~~~~~~~v~~~~tV~~lK~~i~~~-~p~~--~e~~p~~~~~qrLI~-~---Gk-~L~D~~------- 68 (103)
..+.|.....+ +.+-.++.|=.++||.++|++|... |- + ..-+| .++++-|-+ . |+ +|.|..
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk-~~p~S~rp-~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~ 265 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYK-NTPYSQRP-RADDVDLEWRQGRGGRLILQDEDSTSKVEG 265 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTT-TS-GGGS---GGGEEEEEEETTSEEEEESSSSTTSEEET
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHc-CCCCCCCC-CccccceeeecCCCCcccccCCCCCcccCC
Confidence 34566654432 3344578888999999999999988 32 2 12233 367777633 2 33 666543
Q ss_pred ------cccccCCCCCCCCCceEEEEEEecC
Q 034110 69 ------TVGQCKIPYGEVPGGVIIMHVVVQP 93 (103)
Q Consensus 69 ------tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (103)
||..|+|.+| ++|-|+.+.
T Consensus 266 ~wkrLNTL~HY~V~dg------a~vaLv~k~ 290 (539)
T PF08337_consen 266 GWKRLNTLAHYKVPDG------ATVALVPKQ 290 (539)
T ss_dssp TEEE--BHHHHT--TT------EEEEEEES-
T ss_pred CceEeccHhhcCCCCC------ceEEEeecc
Confidence 5667999999 677777664
No 76
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=84.31 E-value=6.9 Score=23.53 Aligned_cols=69 Identities=16% Similarity=0.150 Sum_probs=48.2
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEe----c--CeecCCCCcccccCCCCCCCCC
Q 034110 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS----S--GKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~----~--Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+++.||. ...+++++++|+.+|=+.|.+. +. +.+-.=|.| . ...|+.+++|.+.....+
T Consensus 1 V~llD~~-~~~~~v~~~~t~~~l~~~v~~~l~l~--------e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~---- 67 (80)
T PF09379_consen 1 VRLLDGT-TKTFEVDPKTTGQDLLEQVCDKLGLK--------EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNN---- 67 (80)
T ss_dssp EEESSEE-EEEEEEETTSBHHHHHHHHHHHHTTS--------SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSS----
T ss_pred CCCcCCC-cEEEEEcCCCcHHHHHHHHHHHcCCC--------CccEEEEEEeecCCCcceeccCcccHHHHcCCCC----
Confidence 4678994 4579999999999999999998 32 145555555 2 247888899988766522
Q ss_pred ceEEEEEEec
Q 034110 83 GVIIMHVVVQ 92 (103)
Q Consensus 83 ~~~t~hlv~~ 92 (103)
.+.++|+-++
T Consensus 68 ~~~~l~frvk 77 (80)
T PF09379_consen 68 PPFTLYFRVK 77 (80)
T ss_dssp SSEEEEEEES
T ss_pred CCEEEEEEEE
Confidence 2367777654
No 77
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=84.05 E-value=6.1 Score=23.93 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=34.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~G 61 (103)
+.|+++. |.++..+.++++.|-.+|+.+|...++- ..+..+|-|..
T Consensus 2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~~-------~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFGL-------DNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhCC-------CCCCeEEEEEC
Confidence 3455555 4478889999999999999999999761 13577777763
No 78
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=83.76 E-value=6 Score=23.99 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=33.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~G 61 (103)
+.|++...++ ....+.+..+.|..+|+++|++.++. .....+|-|..
T Consensus 2 ~~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~-------~~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGL-------LDEDFQLKYKD 48 (84)
T ss_dssp EEEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTT-------STSSEEEEEEE
T ss_pred EEEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCC-------CCccEEEEeeC
Confidence 4555555555 32238899999999999999999771 14788887764
No 79
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=83.71 E-value=3.8 Score=28.20 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=40.5
Q ss_pred EEeCC-cchHHHHHHHHHhhCCCCCccCC---CCCcceEEEecC-----------------eec---CCCCcccccCCCC
Q 034110 22 FRYSS-ASTVDMLKQRIVSDWPKGKTIVP---KAVTEIKLISSG-----------------KIL---ENNKTVGQCKIPY 77 (103)
Q Consensus 22 ~~v~~-~~tV~~lK~~i~~~~p~~~e~~p---~~~~~qrLI~~G-----------------k~L---~D~~tL~~~~i~~ 77 (103)
-.++. ++||.+|++.+.+.++....-.| -..+.+|+++.. -+| +|+.+|.+|||.+
T Consensus 20 ~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~n 99 (122)
T PF10209_consen 20 HNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVEN 99 (122)
T ss_pred ecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCc
Confidence 35776 89999999999998654422111 146677776642 367 7889999999987
Q ss_pred C
Q 034110 78 G 78 (103)
Q Consensus 78 g 78 (103)
.
T Consensus 100 E 100 (122)
T PF10209_consen 100 E 100 (122)
T ss_pred c
Confidence 6
No 80
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=82.73 E-value=9 Score=23.69 Aligned_cols=60 Identities=15% Similarity=0.281 Sum_probs=37.0
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccC-C---CCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIV-P---KAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 16 g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~-p---~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
|.....++++ ..||.+|.+.+.+++|..+..+ . .--..+.+..+|+...++.. ..+.+||
T Consensus 14 g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd 77 (88)
T TIGR01687 14 GKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD 77 (88)
T ss_pred CCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC
Confidence 4333346666 8899999999999987422111 0 00234777788888765432 4567774
No 81
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=82.25 E-value=7.6 Score=23.06 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=38.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
...+....||.+|.+.+..++|.-. ......+..+|+...+ . -.+..+++||
T Consensus 15 ~~~~~~~~tv~~ll~~l~~~~p~~~-----~~~~~~v~vN~~~v~~-~-~~~~~l~~gD 66 (77)
T PF02597_consen 15 EIEVPEGSTVRDLLEALAERYPELA-----LRDRVAVAVNGEIVPD-D-GLDTPLKDGD 66 (77)
T ss_dssp EEEESSTSBHHHHHHHHCHHTGGGH-----TTTTEEEEETTEEEGG-G-TTTSBEETTE
T ss_pred EEecCCCCcHHHHHHHHHhhccccc-----cCccEEEEECCEEcCC-c-cCCcCcCCCC
Confidence 4678889999999999999976211 1478899999999988 2 3344556773
No 82
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=81.54 E-value=4.1 Score=25.54 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=24.7
Q ss_pred EEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhh
Q 034110 9 IKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSD 40 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~-~~~tV~~lK~~i~~~ 40 (103)
|.|++.+.++...+.++ ...+|.+||+.|.++
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~ 33 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEK 33 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHH
Confidence 45677788777778886 457999999999877
No 83
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=81.50 E-value=13 Score=24.52 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=43.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-ceEEEecCe--ecCCCCcccccC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLISSGK--ILENNKTVGQCK 74 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~-~qrLI~~Gk--~L~D~~tL~~~~ 74 (103)
+.+-|.+...+..+...+.+++++++.+|-+.+..++ .........++ +--|=-.|+ .|..+..|.++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~ 87 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFE 87 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechH
Confidence 4566777776666667899999999999998888763 11111111132 444544555 666677777655
No 84
>PRK06437 hypothetical protein; Provisional
Probab=80.94 E-value=9.8 Score=22.90 Aligned_cols=51 Identities=12% Similarity=0.067 Sum_probs=34.9
Q ss_pred eCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 13 LYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 13 ~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.++|..-..++++...||.+|=+.+. ++ +..+-+..+|+++. .++-+.+||
T Consensus 6 ~v~g~~~~~~~i~~~~tv~dLL~~Lg--i~---------~~~vaV~vNg~iv~-----~~~~L~dgD 56 (67)
T PRK06437 6 RVKGHINKTIEIDHELTVNDIIKDLG--LD---------EEEYVVIVNGSPVL-----EDHNVKKED 56 (67)
T ss_pred EecCCcceEEEcCCCCcHHHHHHHcC--CC---------CccEEEEECCEECC-----CceEcCCCC
Confidence 34452323578888889888765542 44 77888899999997 344566775
No 85
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=80.19 E-value=5.2 Score=23.93 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=31.7
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCccc
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVG 71 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~ 71 (103)
.+| ..+++.+++|...||.++... ++ -+||+|-..+++..|.
T Consensus 5 vN~---k~~~~~~~~tl~~lr~~~k~~-----------~D--I~I~NGF~~~~d~~L~ 46 (57)
T PF14453_consen 5 VNE---KEIETEENTTLFELRKESKPD-----------AD--IVILNGFPTKEDIELK 46 (57)
T ss_pred ECC---EEEEcCCCcCHHHHHHhhCCC-----------CC--EEEEcCcccCCccccC
Confidence 466 357889999999999887644 33 5699999988876654
No 86
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=78.97 E-value=5.8 Score=27.61 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=30.8
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
..+.+++.+.||.. ..+.+++++||.+|-+.|...
T Consensus 2 ~~~~~~V~l~dg~~-~~~~~~~~~t~~ev~~~v~~~ 36 (207)
T smart00295 2 KPRVLKVYLLDGTT-LEFEVDSSTTAEELLETVCRK 36 (207)
T ss_pred CcEEEEEEecCCCE-EEEEECCCCCHHHHHHHHHHH
Confidence 35789999999955 478999999999999999999
No 87
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=78.91 E-value=9.2 Score=23.08 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=31.1
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+++++.+||.+|-+.+. ++ .....+..+|+++.. +.-+++||
T Consensus 17 ~~~~~~~~tv~~ll~~l~--~~---------~~~v~v~vNg~iv~~-----~~~l~~gD 59 (70)
T PRK08364 17 EIEWRKGMKVADILRAVG--FN---------TESAIAKVNGKVALE-----DDPVKDGD 59 (70)
T ss_pred EEEcCCCCcHHHHHHHcC--CC---------CccEEEEECCEECCC-----CcCcCCCC
Confidence 577888899998887763 33 566788889998854 34466775
No 88
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=78.85 E-value=7.5 Score=23.81 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=34.6
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 16 g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
|.+...++++..+||.+|.+.+....|. .... -....+..+|+...++. -+.+||
T Consensus 17 g~~~~~~~~~~~~tv~~L~~~l~~~~p~-l~~~---~~~~~vavN~~~v~~~~-----~l~dgD 71 (82)
T PLN02799 17 GVSDMTLELPAGSTTADCLAELVAKFPS-LEEV---RSCCVLALNEEYTTESA-----ALKDGD 71 (82)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHChh-HHHH---hhCcEEEECCEEcCCCc-----CcCCCC
Confidence 4344467888899999999999888651 1110 12234667888765443 456674
No 89
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=77.44 E-value=5.9 Score=26.25 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=18.9
Q ss_pred EEEecCeecCCCCcccccCCCCCC
Q 034110 56 KLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 56 rLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.|-|+||.|..+.+|++| +..++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNE 25 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNE 25 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCc
Confidence 478999999999999998 44444
No 90
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=77.01 E-value=9 Score=24.19 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=26.7
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 034110 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (103)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p 42 (103)
+++..-|.++.-+.+.++++..+|++.|++.+.
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~ 34 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFK 34 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 444543447778999999999999999999965
No 91
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=76.98 E-value=11 Score=24.49 Aligned_cols=68 Identities=10% Similarity=0.145 Sum_probs=39.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEecCCCCCCc
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTK 99 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~~~~~k~ 99 (103)
...++=...++.||..++.++. .+-+.=.+..+...|+++++|-+-++.-. +.+.+.+-+++.++.+|
T Consensus 6 ~q~mDI~epl~~Lk~lLe~Rl~-------~~L~~~~f~LQD~~L~~~k~L~dQcVqge----GlVQlnvQi~s~~~~~r 73 (88)
T PF11620_consen 6 MQHMDIREPLSTLKKLLERRLG-------ISLSDYEFWLQDIQLEPHKSLVDQCVQGE----GLVQLNVQIKSNQGEPR 73 (88)
T ss_dssp EEEEESSSBGGGHHHHSHHHH--------S--SS-EEEETTEE--TTSBTTTSS--------SEEEEEEEEE--TT--E
T ss_pred EEEEecCCcHHHHHHHHHHhhC-------CCcCCCeEEeccceecCCccHHHhhcccc----CEEEEEEEEEecCCCcc
Confidence 4566667788999999998833 11555566667778999999998888744 34666666666666554
No 92
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=75.06 E-value=0.94 Score=35.64 Aligned_cols=46 Identities=28% Similarity=0.425 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhh-CCCC----CccCCCCCcceE-----EEecCeecCCCCcccccC
Q 034110 27 ASTVDMLKQRIVSD-WPKG----KTIVPKAVTEIK-----LISSGKILENNKTVGQCK 74 (103)
Q Consensus 27 ~~tV~~lK~~i~~~-~p~~----~e~~p~~~~~qr-----LI~~Gk~L~D~~tL~~~~ 74 (103)
++||.++|..+++. .+.+ .+.+| .+-++ |+|+-|.+.|++||.+..
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp ----------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 68999999999995 3333 23455 78888 999999999999998754
No 93
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=74.19 E-value=3.6 Score=25.60 Aligned_cols=70 Identities=16% Similarity=0.322 Sum_probs=42.8
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEE-EecCeecCCCCcccccCCCCCCCCCceEEEEEEec
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrL-I~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (103)
++|..+ .++.++....-.+.++-.++ .+--.+| ++.-.| =-+|.+|+-++.+++|++.++ +++.|.++
T Consensus 3 VNGqPv-~VEANvnaPLh~v~akALe~--sgNvgQP--~ENWElkDe~G~vlD~~kKveD~Gftng------vkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPV-QVEANVNAPLHPVRAKALEQ--SGNVGQP--PENWELKDESGQVLDVNKKVEDFGFTNG------VKLFLSLK 71 (76)
T ss_pred eCCCce-eeecCCCCcchHHHHHHHhh--ccccCCC--cccceeeccCCcEeeccchhhhcccccc------ceEEEEee
Confidence 455332 35556666666666665555 1111222 332222 146888999999999999988 78888877
Q ss_pred CC
Q 034110 93 PS 94 (103)
Q Consensus 93 ~~ 94 (103)
.-
T Consensus 72 AG 73 (76)
T PF10790_consen 72 AG 73 (76)
T ss_pred cc
Confidence 54
No 94
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=73.15 E-value=14 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=29.2
Q ss_pred eeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCe
Q 034110 20 GPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK 62 (103)
Q Consensus 20 ~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk 62 (103)
..+.+.++.+..+|.++|.++ .| +++++|-|.-.
T Consensus 13 IaIrvp~~~~y~~L~~ki~~kLkl~---------~e~i~LsYkde 48 (80)
T cd06406 13 VAIQVARGLSYATLLQKISSKLELP---------AEHITLSYKSE 48 (80)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC---------chhcEEEeccC
Confidence 468999999999999999999 65 78899988654
No 95
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=72.07 E-value=8.9 Score=22.57 Aligned_cols=51 Identities=14% Similarity=0.250 Sum_probs=35.1
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+| .+++++..+||.+|.+.+. ++ ...+.+..+|+++..+. -++..+.+||
T Consensus 4 iNg---~~~~~~~~~tv~~ll~~l~--~~---------~~~i~V~vNg~~v~~~~-~~~~~L~~gD 54 (65)
T cd00565 4 VNG---EPREVEEGATLAELLEELG--LD---------PRGVAVALNGEIVPRSE-WASTPLQDGD 54 (65)
T ss_pred ECC---eEEEcCCCCCHHHHHHHcC--CC---------CCcEEEEECCEEcCHHH-cCceecCCCC
Confidence 456 3568888999999887765 33 67788899999885431 1223466775
No 96
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=71.27 E-value=9.8 Score=24.48 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=28.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p 42 (103)
..+|+-..|.. .-+.+.|++++.+|++.|++++-
T Consensus 2 ~FK~~~~~Grv-hRf~~~~s~~~~~L~~~I~~Rl~ 35 (86)
T cd06409 2 AFKFKDPKGRV-HRFRLRPSESLEELRTLISQRLG 35 (86)
T ss_pred cEEeeCCCCCE-EEEEecCCCCHHHHHHHHHHHhC
Confidence 35788888844 56899999999999999999954
No 97
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=68.09 E-value=15 Score=23.38 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=24.7
Q ss_pred EEEeCCCCeeeeEEeCC--cchHHHHHHHHHhhCC
Q 034110 10 KFRLYDGSDIGPFRYSS--ASTVDMLKQRIVSDWP 42 (103)
Q Consensus 10 ~~~~~~g~~~~~~~v~~--~~tV~~lK~~i~~~~p 42 (103)
+++..-+.++.-+.+++ +++-.+|++.|+..+-
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~ 36 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG 36 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 44444333666788988 7799999999999954
No 98
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=67.68 E-value=15 Score=21.55 Aligned_cols=30 Identities=30% Similarity=0.200 Sum_probs=24.5
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~ 41 (103)
|++.+.+| ...+++...|+.++-..|...+
T Consensus 1 I~v~lpdG---~~~~~~~g~T~~d~A~~I~~~l 30 (60)
T PF02824_consen 1 IRVYLPDG---SIKELPEGSTVLDVAYSIHSSL 30 (60)
T ss_dssp EEEEETTS---CEEEEETTBBHHHHHHHHSHHH
T ss_pred CEEECCCC---CeeeCCCCCCHHHHHHHHCHHH
Confidence 56777999 3467999999999999998774
No 99
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=64.01 E-value=27 Score=21.53 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=26.0
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
+++-+.+| ....+.+-|++||.++=+++-+.
T Consensus 2 ~~V~LPng-~~t~V~vrpg~ti~d~L~~~c~k 32 (72)
T cd01760 2 CRVYLPNG-QRTVVPVRPGMSVRDVLAKACKK 32 (72)
T ss_pred EEEECcCC-CeEEEEECCCCCHHHHHHHHHHH
Confidence 57778999 44578999999999998888877
No 100
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=63.55 E-value=21 Score=21.36 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=25.2
Q ss_pred EEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhhCC
Q 034110 8 DIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWP 42 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~-~~~tV~~lK~~i~~~~p 42 (103)
.|+++..++ +..+.+. .+.|..+|+++|.+.++
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~ 35 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFG 35 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhC
Confidence 355555544 4567777 89999999999999977
No 101
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=61.66 E-value=41 Score=21.71 Aligned_cols=69 Identities=9% Similarity=0.067 Sum_probs=41.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCC-CcceEEEecC--eecCCCCcccccCCCCC
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKA-VTEIKLISSG--KILENNKTVGQCKIPYG 78 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~-~~~qrLI~~G--k~L~D~~tL~~~~i~~g 78 (103)
-|.-++.+.=....+-++..+|+.++-++++..- -+--.++. -..+|+-++| +.+..+.++++.+|..-
T Consensus 5 Pl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~Hs--VGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~ 76 (85)
T PF06234_consen 5 PLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHS--VGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPM 76 (85)
T ss_dssp EEEEEETT-SBEEEEEEETT-BHHHHHHHHHTTT--TTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TT
T ss_pred ceeEeeccceEEEEEEeCCCCcHHHHHHHHhhhh--cceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcc
Confidence 3444444332223478899999999999999771 00011111 3478888999 99999999999998754
No 102
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=61.60 E-value=30 Score=20.19 Aligned_cols=51 Identities=14% Similarity=0.262 Sum_probs=33.9
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+| ..+++...+||.+|.+.+. ++ +....+..+|+++.-++ -.++.+.+||
T Consensus 3 iNg---~~~~~~~~~tv~~ll~~l~--~~---------~~~v~v~vN~~iv~~~~-~~~~~L~~gD 53 (64)
T TIGR01683 3 VNG---EPVEVEDGLTLAALLESLG--LD---------PRRVAVAVNGEIVPRSE-WDDTILKEGD 53 (64)
T ss_pred ECC---eEEEcCCCCcHHHHHHHcC--CC---------CCeEEEEECCEEcCHHH-cCceecCCCC
Confidence 466 3468888889998887654 33 67778888998884221 1234577775
No 103
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=60.82 E-value=21 Score=28.88 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=44.9
Q ss_pred CCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCC--CcccccCCCCCC
Q 034110 15 DGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENN--KTVGQCKIPYGE 79 (103)
Q Consensus 15 ~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~--~tL~~~~i~~g~ 79 (103)
.. ...++.+.......++++.++.. ++ .+..-|||+++.|.++ +.|.+|++..+|
T Consensus 11 ~~-~~~~i~v~~dg~L~nl~aL~~~d~g~~---------~~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 11 FE-KKFPIPVTTDGELNNLAALCWKDTGIV---------YDPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred ce-eeeccccccccchhhHHHHHHHHhCcc---------cchhhcccCCCccccchhhhhhhcccccce
Confidence 44 33578888888999999999988 44 7888999999999654 788899999885
No 104
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=60.76 E-value=11 Score=23.82 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.6
Q ss_pred eEEeCCcchHHHHHHHHHhh
Q 034110 21 PFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~ 40 (103)
+++++.++|+.++|+.++++
T Consensus 3 ~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 3 PLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEETT-BHHHHHHHHHHH
T ss_pred EEEccCcCcHHHHHHHHHHH
Confidence 67899999999999999988
No 105
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=60.62 E-value=43 Score=21.57 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=28.2
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p 42 (103)
+++++.-+.++..+.++++.+-.+|.++|.+.+.
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~ 36 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFG 36 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5666664447888999999999999999999965
No 106
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=59.35 E-value=11 Score=26.58 Aligned_cols=31 Identities=29% Similarity=0.520 Sum_probs=22.5
Q ss_pred cCe-ecCCCCcccccCCCCCCCCCceEEEEEEecCCCC
Q 034110 60 SGK-ILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA 96 (103)
Q Consensus 60 ~Gk-~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~~~~ 96 (103)
.|+ ..+|++||.++++.-||+ +.+.+.++.-
T Consensus 109 ~g~Kg~ddnktL~~~kf~iGD~------lDVaI~~p~~ 140 (151)
T KOG3391|consen 109 LGRKGIDDNKTLQQTKFEIGDY------LDVAITPPNR 140 (151)
T ss_pred cCcccCCccchhhhCCccccce------EEEEecCccc
Confidence 355 458999999999999986 4555555543
No 107
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=56.22 E-value=54 Score=28.87 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=36.9
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeec
Q 034110 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKIL 64 (103)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L 64 (103)
.|-+.++ .+..+-++++.|+..+++.|..+ +| .+.|-|+|.|...
T Consensus 318 iFs~~~~-~~~~~~~~~~ntl~~~~~~I~~~Tgip---------e~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 318 IFSMVQA-TSHEYYVHADNTLHSLIERISKQTGIP---------EGKQELLFEGGLS 364 (732)
T ss_pred EEeeccc-eEEEEecChhhhHHHHHHHHHHhhCCC---------CccceeeeecCcc
Confidence 3556677 44578899999999999999999 66 8889999998744
No 108
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=55.68 E-value=63 Score=22.00 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=37.7
Q ss_pred ceEEEEEEeCCCCeee---eEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeec
Q 034110 5 ELIDIKFRLYDGSDIG---PFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKIL 64 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~---~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L 64 (103)
-.|.|+|+-.++-.+. .+.++++.|++.+-..|... ++ ++++-++|-..-.
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~---------as~slflYVN~sF 84 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQ---------ASDSLFLYVNNSF 84 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCc---------ccCeEEEEEcCcc
Confidence 3689999988773332 37899999999999888888 55 6677676655533
No 109
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=55.22 E-value=32 Score=22.13 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=42.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCC--CC---ccCCCCCcceEEEecCeecCCCCccccc
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPK--GK---TIVPKAVTEIKLISSGKILENNKTVGQC 73 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~--~~---e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (103)
.-|+|-+-||+. ..+.|++.+|+.++-+.+... +.. +| |..| -++--|.++|.+.|-++
T Consensus 3 ~vvkv~~~Dg~s-K~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P-------~l~lER~~EDHE~vvdv 68 (85)
T cd01787 3 QVVKVYSEDGAS-KSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLP-------HLQLERLFEDHELVVEV 68 (85)
T ss_pred eEEEEEecCCCe-eEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecc-------hhhhhhhccchHHHHHH
Confidence 467888899955 479999999999999999988 222 23 3443 23446788888777654
No 110
>smart00455 RBD Raf-like Ras-binding domain.
Probab=53.26 E-value=49 Score=20.05 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=36.3
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecC--eecCCC
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSG--KILENN 67 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~G--k~L~D~ 67 (103)
.++-+.+|.. ..+.+-|+.||.++=+.+-+. +. ++...+...| +.|+-+
T Consensus 2 ~~v~LP~~~~-~~V~vrpg~tl~e~L~~~~~kr~l~---------~~~~~v~~~g~~k~ldl~ 54 (70)
T smart00455 2 CKVHLPDNQR-TVVKVRPGKTVRDALAKALKKRGLN---------PECCVVRLRGEKKPLDLN 54 (70)
T ss_pred eEEECCCCCE-EEEEECCCCCHHHHHHHHHHHcCCC---------HHHEEEEEcCCCcceecC
Confidence 4667889955 468999999999998888887 44 7777777655 455433
No 111
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=48.61 E-value=7.8 Score=30.45 Aligned_cols=46 Identities=26% Similarity=0.479 Sum_probs=35.1
Q ss_pred CCCeeeeEEeC-CcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcc
Q 034110 15 DGSDIGPFRYS-SASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTV 70 (103)
Q Consensus 15 ~g~~~~~~~v~-~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL 70 (103)
+| .+..+.+. -+..|..+|+++... ++ ++-|++.|.|.+|.|+..+
T Consensus 291 dg-~~~~~~~~~~~~~~~~~k~k~~~~~~i~---------~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 291 DG-QVIKITVQSLSENVASLKEKIADESQIP---------ANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CC-ceeeeccccccccccccccccccccccc---------hhheeeccCCcccCccccc
Confidence 45 33344454 667889999999888 55 9999999999999988544
No 112
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=48.52 E-value=22 Score=22.47 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=18.4
Q ss_pred eEEeCCcchHHHHHHHHHhh
Q 034110 21 PFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~ 40 (103)
.+.++.+.|+.++|+.++++
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQ 22 (78)
T ss_pred eEEccccccHHHHHHHHHHH
Confidence 57889999999999999988
No 113
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=47.54 E-value=88 Score=26.15 Aligned_cols=67 Identities=18% Similarity=0.198 Sum_probs=46.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCC--cc--CCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK--TI--VPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~--e~--~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
-+|||-..|.. -+++.++++.+.|-++|...+.... |. .-..++.|-.||+ +..++|+.++|+..|+
T Consensus 2 i~rfRsk~G~~--Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s---~l~dqt~~dlGL~hGq 72 (571)
T COG5100 2 IFRFRSKEGQR--RVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFS---LLKDQTPDDLGLRHGQ 72 (571)
T ss_pred eEEEecCCCce--eeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeee---cccccChhhhccccCc
Confidence 37899999943 4799999999999999998844331 11 0012444444443 4677899999999994
No 114
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.66 E-value=92 Score=21.27 Aligned_cols=75 Identities=15% Similarity=0.124 Sum_probs=42.3
Q ss_pred CceEEEEEEeC----CCCeeeeEEeCC-cchHHHHHHHHHhhCCCCCccCC---CCCcceEEEec---------------
Q 034110 4 EELIDIKFRLY----DGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVP---KAVTEIKLISS--------------- 60 (103)
Q Consensus 4 ~~~v~l~~~~~----~g~~~~~~~v~~-~~tV~~lK~~i~~~~p~~~e~~p---~~~~~qrLI~~--------------- 60 (103)
+.+++||+.-. +=+.+.-..++- +.||.+++..|-+.+|-+..-.| -.-+.+++++.
T Consensus 5 ~~tiTvRvIrsFeyRn~KnvV~Hd~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldh 84 (127)
T KOG4147|consen 5 EVTITVRVIRSFEYRNFKNVVYHDVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDH 84 (127)
T ss_pred ccEEEEEEEeccccccccceeEeccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccC
Confidence 44555554321 223333345665 77999999888888764422111 12344444433
Q ss_pred -C-eecC-CCCcccccCCCCC
Q 034110 61 -G-KILE-NNKTVGQCKIPYG 78 (103)
Q Consensus 61 -G-k~L~-D~~tL~~~~i~~g 78 (103)
. -.|+ ++++|..|||.+.
T Consensus 85 Dd~w~L~d~~ktL~~~GIenE 105 (127)
T KOG4147|consen 85 DDRWLLKDEDKTLKAAGIENE 105 (127)
T ss_pred CcceeecCccchHHHhccCcc
Confidence 2 2454 6789999999865
No 115
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=46.60 E-value=72 Score=19.97 Aligned_cols=46 Identities=20% Similarity=0.202 Sum_probs=33.0
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecC--eecC
Q 034110 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSG--KILE 65 (103)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~G--k~L~ 65 (103)
++-++||.. ..+.+-|++||.++=.++-+. +. ++...+...| |.|.
T Consensus 3 rV~LPdg~~-T~V~vrpG~ti~d~L~kllekRgl~---------~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 3 RVILPDGST-TVVPTRPGESIRDLLSGLCEKRGIN---------YAAVDLFLVGGDKPLV 52 (73)
T ss_pred EEECCCCCe-EEEEecCCCCHHHHHHHHHHHcCCC---------hhHEEEEEecCCcccc
Confidence 566899944 568999999999988888777 54 5556555555 3554
No 116
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=46.27 E-value=60 Score=23.16 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=36.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCccccc
Q 034110 6 LIDIKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~-~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (103)
.|+|++ .-| .| -++++. ...+..+++...+.+|-. .+ |+-|+++....|++||
T Consensus 67 ~veL~V--~vG-ri-~lele~~~~~ie~I~~iCee~lpf~-------y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 67 EVELTV--KVG-RI-ILELEDEEDVIEKIREICEEVLPFG-------YD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEE--EEe-EE-EEEecCcHHHHHHHHHHHHHhCCCc-------eE----eeeeEEeccCCchhhh
Confidence 344444 445 33 367777 778888888887776611 22 4579999999999996
No 117
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=46.27 E-value=29 Score=27.13 Aligned_cols=52 Identities=12% Similarity=0.164 Sum_probs=37.1
Q ss_pred EeCCcchHHHHHHHHHhhC----CCCCc----cCCCCCcceEEEecCeecCCCCcccccC
Q 034110 23 RYSSASTVDMLKQRIVSDW----PKGKT----IVPKAVTEIKLISSGKILENNKTVGQCK 74 (103)
Q Consensus 23 ~v~~~~tV~~lK~~i~~~~----p~~~e----~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 74 (103)
....---|..|++.|++++ +.... ..+...+-+.|+|+|.+|..+-||+..+
T Consensus 253 ~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr 312 (331)
T PF11816_consen 253 NAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVR 312 (331)
T ss_pred cccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHH
Confidence 3344457888999999997 21110 1112378899999999999999999866
No 118
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=46.26 E-value=74 Score=22.80 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=36.2
Q ss_pred EEEeCCCCeeeeEEeCCcc-hHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCccccc
Q 034110 10 KFRLYDGSDIGPFRYSSAS-TVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (103)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~-tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (103)
-++...| .| -++++..+ ++..+++...+.+|=+ .+ ++-|+++.+..|+.||
T Consensus 77 eL~VkvG-ri-~~eie~e~~~~e~ie~ic~e~lPf~-------y~----v~vG~F~r~kpTVTDy 128 (165)
T COG4055 77 ELKVKVG-RI-ILEIEDEDETMEKIEEICDEMLPFG-------YE----VRVGKFTRRKPTVTDY 128 (165)
T ss_pred EEEEEee-EE-EEEecCcHhHHHHHHHHHHHhCCCc-------ee----eeeeeeeccCCcchhh
Confidence 3444566 44 36777775 8888888877777722 22 4779999999999986
No 119
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=46.10 E-value=80 Score=20.39 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=33.2
Q ss_pred eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEe--c--Ce-ecC-CCCcccccCCCCC
Q 034110 19 IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--S--GK-ILE-NNKTVGQCKIPYG 78 (103)
Q Consensus 19 ~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~--~--Gk-~L~-D~~tL~~~~i~~g 78 (103)
.....|+..+||..+...+...+- + ..+-||=- . +. .|. ...||++++|..|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~-----i---~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~g 72 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFN-----I---QEETRLWNKYSENSYELLNNPEITVEDAGLYDG 72 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT---------TS-EEEEEECTTTCEEEE--TTSBTTTTT--TT
T ss_pred HhHhhccccChHHHHHHHHHHHhC-----C---CccceehhccCCcchhhhCCCCccHHHccCcCC
Confidence 345789999999999999998854 1 33456632 1 22 454 4479999999988
No 120
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=44.90 E-value=1.5e+02 Score=24.38 Aligned_cols=77 Identities=12% Similarity=0.116 Sum_probs=49.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE-ecCeecCCCCcccccCCCCCCCCCceEE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-SSGKILENNKTVGQCKIPYGEVPGGVII 86 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI-~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (103)
+|++.-.+ ....+-+..+..|.+|=-.|.+....+..+ +.....-.|- -.|..|+-++||.+.+|.+|| +
T Consensus 4 RVtV~~~~--~~~DlaLPa~~PvaellP~ll~~~~~~~~~-~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~------~ 74 (452)
T TIGR02958 4 RVTVLAGR--RAVDVALPADVPVAELIPDLVDLLDDRGAA-ELGAVRWALARAGGSPLDPDASLAEAGVRDGE------L 74 (452)
T ss_pred EEEEeeCC--eeeeeecCCCCcHHHHHHHHHHHhCccccc-CCCCcceEEecCCCCCCCCCCCHHHcCCCCCC------e
Confidence 44444333 334677888899999888888774321100 0113333443 367799999999999999994 5
Q ss_pred EEEEecC
Q 034110 87 MHVVVQP 93 (103)
Q Consensus 87 ~hlv~~~ 93 (103)
+||.-..
T Consensus 75 L~L~p~~ 81 (452)
T TIGR02958 75 LVLVPAS 81 (452)
T ss_pred EEEeeCC
Confidence 7776643
No 121
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=44.59 E-value=72 Score=19.45 Aligned_cols=51 Identities=10% Similarity=0.175 Sum_probs=28.3
Q ss_pred EEeCC-cchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 22 FRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 22 ~~v~~-~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
+++++ ..||.+|++.|.+++|. |... ......+.--+++.-.++ .-+.+||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~-~~~~-~~~~~~~~aVN~~~~~~~-----~~l~dgD 70 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDR-WALA-LEDGKLLAAVNQTLVSFD-----HPLTDGD 70 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCcc-HHhh-hcCCCEEEEECCEEcCCC-----CCCCCCC
Confidence 44543 47999999999998763 2110 012334444455443332 3466775
No 122
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=43.56 E-value=86 Score=20.05 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=41.7
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-ceEEEecCe--ecCCCCcccccC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLISSGK--ILENNKTVGQCK 74 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~-~qrLI~~Gk--~L~D~~tL~~~~ 74 (103)
...+.|++...+......+.++.+.|+.+|-+.+...+-.. -.+.+.+ +--|==.|+ .|..+.+|.+|.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~--~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKD--LLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHH--TT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhh--cCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 35677888888666667899999999999988887761000 0011122 445544455 667777787765
No 123
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=42.79 E-value=75 Score=20.55 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=29.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
+|+|++-+.||..+ .+++.-+++..+|=+.+..+
T Consensus 1 ~V~L~V~Lpdg~~i-~V~v~~s~~a~~Vleav~~k 34 (87)
T cd01777 1 DVELRIALPDKATV-TVRVRKNATTDQVYQALVAK 34 (87)
T ss_pred CeEEEEEccCCCEE-EEEEEEcccHHHHHHHHHHH
Confidence 47899999999766 68999999999999999888
No 124
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=42.57 E-value=27 Score=18.89 Aligned_cols=17 Identities=6% Similarity=0.348 Sum_probs=13.2
Q ss_pred CCcceEEEecCeec-CCC
Q 034110 51 AVTEIKLISSGKIL-ENN 67 (103)
Q Consensus 51 ~~~~qrLI~~Gk~L-~D~ 67 (103)
...++.+.|+|+++ -|+
T Consensus 4 ~~~qLTIfY~G~V~Vfd~ 21 (36)
T PF06200_consen 4 ETAQLTIFYGGQVCVFDD 21 (36)
T ss_pred CCCcEEEEECCEEEEeCC
Confidence 37888999999977 343
No 125
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=42.15 E-value=34 Score=27.56 Aligned_cols=64 Identities=19% Similarity=0.201 Sum_probs=44.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecC---eec--CCCCcccccCCCCC
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KIL--ENNKTVGQCKIPYG 78 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~G---k~L--~D~~tL~~~~i~~g 78 (103)
.|.+|+.||+.. -..+-.+.+|..|=..+..+.. +-+ -...+|+++- |.| ..+.|+.++||.+.
T Consensus 279 ~i~vR~pdG~R~-qrkf~~sepv~ll~~~~~s~~d----g~~--k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS 347 (356)
T KOG1364|consen 279 SIQVRFPDGRRK-QRKFLKSEPVQLLWSFCYSHMD----GSD--KKRFKLVQAIPASKTLDYGADATFKEAGLANS 347 (356)
T ss_pred EEEEecCCccHH-HHhhccccHHHHHHHHHHHhhc----ccc--cccceeeecccchhhhhccccchHHHhccCcc
Confidence 488888999654 3566777777776666555521 111 5677888887 655 56789999999965
No 126
>KOG4261 consensus Talin [Cytoskeleton]
Probab=40.79 E-value=48 Score=29.75 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=44.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEe------cCeecCCCCcccccCCCCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS------SGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~------~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.++|++-+. .....+-|+|+++|.+-...|.+.+|..... +++..|.. .|-.|+.+.+|..|=+.++|
T Consensus 3 ~lsl~i~~~--~v~ktmqfepst~vyda~~~ire~~~~~~~~----a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d 76 (1003)
T KOG4261|consen 3 ALSLKISSA--NVVKTMQFEPSTLVYDACKVIREKFAEADVG----ASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGD 76 (1003)
T ss_pred eeEEEEEec--ceeeeeeecCchHHHHHHHHHHHHhhhcccC----chhcceeeecCCcccceeecCCccHHHHHHhccc
Confidence 344554433 3555789999999999999999997722111 34444422 35577888888877666665
No 127
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.58 E-value=46 Score=26.08 Aligned_cols=35 Identities=14% Similarity=0.231 Sum_probs=30.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
..-.|-||+.||.. +...|.+..+...|+..|...
T Consensus 209 s~crlQiRl~DG~T-l~~tF~a~E~L~~VR~wVd~n 243 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQT-LTQTFNARETLAAVRLWVDLN 243 (290)
T ss_pred cceEEEEEcCCCCe-eeeecCchhhHHHHHHHHHHh
Confidence 45678899999954 568999999999999999887
No 128
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=40.05 E-value=53 Score=21.10 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=27.3
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p 42 (103)
|+++..-+.++....++++.|-..|.+++.+.++
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~ 34 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCR 34 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhC
Confidence 3555553447888899999999999999999965
No 129
>KOG4146 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.40 E-value=1.1e+02 Score=20.20 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=22.7
Q ss_pred ceEEEEEEeCCCCeee-------eEEe---CCcchHHHHHHHHHhh
Q 034110 5 ELIDIKFRLYDGSDIG-------PFRY---SSASTVDMLKQRIVSD 40 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~-------~~~v---~~~~tV~~lK~~i~~~ 40 (103)
+..+++|++.+|.+.. .... +..+||++|-..|...
T Consensus 3 ~~~~vkvef~Gg~dllfn~~k~~~~~l~~~e~~~tvgdll~yi~~~ 48 (101)
T KOG4146|consen 3 EAHEVKVEFLGGLDLLFNKQKIHLTRLEVGESPATVGDLLDYIFGK 48 (101)
T ss_pred cceeEEEEEcCceeeeECCeEEEEEecccCCCcccHHHHHHHHHHH
Confidence 4566777777774431 1222 2557899988888876
No 130
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=39.27 E-value=71 Score=20.24 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=27.8
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecC
Q 034110 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (103)
Q Consensus 20 ~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~G 61 (103)
..+.+.+..+..+|.+.|++..+ ..++..+|-|.-
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~-------l~~~~~~LSY~~ 43 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALP-------QQAQRGQLSYRA 43 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhc-------CChhhcEEEecC
Confidence 35788899999999999999954 127888887764
No 131
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=38.71 E-value=91 Score=22.17 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=31.6
Q ss_pred EEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCccccc
Q 034110 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (103)
Q Consensus 22 ~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~ 73 (103)
++++....+..+++...+.+|-+ .+ |.-|+++.+..|++||
T Consensus 78 le~~~~~~i~~I~eiC~e~~pF~-------y~----i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 78 LELEDEDIVEEIEEICKEMLPFG-------YE----VRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEecCHHHHHHHHHHHHhhCCCc-------eE----eeeeeEeecCCchhhh
Confidence 56667888899988888887611 21 4679999999999996
No 132
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=38.69 E-value=1.5e+02 Score=21.53 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=29.3
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEE--EecCee---cCCCCccccc
Q 034110 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKI---LENNKTVGQC 73 (103)
Q Consensus 20 ~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrL--I~~Gk~---L~D~~tL~~~ 73 (103)
..+.++.+.||.+|.+.++..+.-. ..+...+|| +++||+ +..+.+|++.
T Consensus 36 ~~~~vpk~~tV~Dll~~l~~k~~~~----~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEELQKKVGFS----EEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEE--BTT-BHHHHHHHHHTT--------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCC----cCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 4578899999999999999994310 011456776 677775 5777777765
No 133
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=38.34 E-value=87 Score=18.56 Aligned_cols=56 Identities=16% Similarity=0.200 Sum_probs=37.1
Q ss_pred eEEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCC
Q 034110 6 LIDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66 (103)
Q Consensus 6 ~v~l~~~~~~g~---~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D 66 (103)
+|.|+|...+|. .-.++.+..++|..+|-+.|..-.+.+.+ +-.-.++..|..|.+
T Consensus 1 qv~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~-----~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 1 QVQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEE-----PVPFDFLINGEELRT 59 (65)
T ss_pred CEEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCC-----CCcEEEEECCEEeec
Confidence 478888887772 11268999999999998888776522222 334556667766643
No 134
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=37.22 E-value=61 Score=24.71 Aligned_cols=37 Identities=22% Similarity=0.350 Sum_probs=29.2
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 3 ~~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
+++.|+|.|+..|| ....+.++-..-|.-+|+.|..+
T Consensus 24 ~~d~itlef~~~DG-tlit~~~Df~~~v~i~kalilge 60 (240)
T PF14941_consen 24 EEDTITLEFQRSDG-TLITQLADFKQEVQIFKALILGE 60 (240)
T ss_pred CCceEEEEEEcCCC-cEEeeehhhhhHHHHHHHHHcCh
Confidence 35789999999999 44467777777888888888765
No 135
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=36.60 E-value=99 Score=20.44 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=24.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
.++|...+| .+..++|....+-.++|+++...
T Consensus 2 vi~~I~~dG-~tk~VNV~~c~~a~eI~~rvLKK 33 (105)
T PF14847_consen 2 VIRFILEDG-STKTVNVSGCFNAQEIKRRVLKK 33 (105)
T ss_dssp EEEEEETTT-EEEEEE--S--HHHHHHHHHHHH
T ss_pred EEEEECCCC-cEEEEEECCCCCHHHHHHHHHHH
Confidence 367888888 67789999999999999999988
No 136
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=36.56 E-value=74 Score=19.11 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=19.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHH
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIV 38 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~ 38 (103)
-+.|.|++++.++.-...+.++...+...|++.+.
T Consensus 24 LG~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~ 58 (85)
T PF02120_consen 24 LGSVEVKLRLQGGNLSVQFTAENPETKELLRQNLP 58 (85)
T ss_dssp G--EEEEEEEETTEEEEEEE--SSHHHHHHHHTHH
T ss_pred cCcEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHH
Confidence 46899999998884333455555555555554433
No 137
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=34.03 E-value=1e+02 Score=19.41 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=23.9
Q ss_pred cchHHHHHHHHHhh-CCCCCccCCCCCcceEEEecCee----cCCCCcccccCCCCCC
Q 034110 27 ASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLISSGKI----LENNKTVGQCKIPYGE 79 (103)
Q Consensus 27 ~~tV~~lK~~i~~~-~p~~~e~~p~~~~~qrLI~~Gk~----L~D~~tL~~~~i~~g~ 79 (103)
.+|+.+|-++|... +-..-..+ .-.-++||..-. -..+++|+++||.+|.
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v---~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs 62 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDV---SVGGTILYDSDEEEYDDNLPKKLSELGIVNGS 62 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEE---EES-EEEE-SSSSSSTTCTTSBGGGGT--TT-
T ss_pred hCcHHHHHHHHHHhccCCCCCEE---EeCCCEEEcCCcchhhhcccCChhHcCCCCCC
Confidence 46888888877654 22000011 113455555443 2345789999999884
No 138
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=33.44 E-value=77 Score=22.75 Aligned_cols=29 Identities=28% Similarity=0.222 Sum_probs=24.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHH
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLK 34 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK 34 (103)
+.|.|.|...+|..+ .+..-.++||.++-
T Consensus 42 e~i~Itfv~~dG~~~-~i~g~vGdtlLd~a 70 (159)
T KOG3309|consen 42 EDIKITFVDPDGEEI-KIKGKVGDTLLDAA 70 (159)
T ss_pred ceEEEEEECCCCCEE-EeeeecchHHHHHH
Confidence 569999999999776 67888899998863
No 139
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.50 E-value=39 Score=28.48 Aligned_cols=50 Identities=24% Similarity=0.226 Sum_probs=38.8
Q ss_pred EEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 034110 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (103)
Q Consensus 22 ~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (103)
+..+-..+=.+|...|+..+. ++ -+.+|.|-+||+|.-.+||.+-|++.+
T Consensus 54 ~k~sL~i~Gselqa~iakklg-----i~--enhvKci~~~Kils~~ktlaeQglk~n 103 (568)
T KOG2561|consen 54 KKCSLHITGSELQALIAKKLG-----IK--ENHVKCIINGKILSCRKTLAEQGLKIN 103 (568)
T ss_pred hhcccccccHHHHHHHHHHcC-----Cc--hhhhheeeccceeecccchhhhhhhhh
Confidence 344455566789999999832 22 669999999999999999999887754
No 140
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=30.95 E-value=1.2e+02 Score=17.80 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=33.4
Q ss_pred eCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 13 LYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 13 ~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
..+| .++++....||.+|-+.+... ...+.+-.+|.++.-+ .-++.-+.+||
T Consensus 4 ~vNg---~~~~~~~~~tl~~ll~~l~~~-----------~~~vaVavN~~iv~r~-~w~~~~L~~gD 55 (66)
T PRK08053 4 LFND---QPMQCAAGQTVHELLEQLNQL-----------QPGAALAINQQIIPRE-QWAQHIVQDGD 55 (66)
T ss_pred EECC---eEEEcCCCCCHHHHHHHcCCC-----------CCcEEEEECCEEeChH-HcCccccCCCC
Confidence 3577 356888888999887765433 4457788889888411 12233467775
No 141
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=30.81 E-value=1.7e+02 Score=21.90 Aligned_cols=41 Identities=15% Similarity=0.158 Sum_probs=29.5
Q ss_pred CCCCceEEEEEEeCC-C------CeeeeEEeCCcchHHHHHHHHHhhC
Q 034110 1 MPDEELIDIKFRLYD-G------SDIGPFRYSSASTVDMLKQRIVSDW 41 (103)
Q Consensus 1 ~~~~~~v~l~~~~~~-g------~~~~~~~v~~~~tV~~lK~~i~~~~ 41 (103)
|.++..+.|++.=.+ + .+.+.+.+++.+||.++=..|.+.+
T Consensus 1 ~~~~~~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~ 48 (244)
T PRK12385 1 MAEMKNLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDNL 48 (244)
T ss_pred CCCCcEEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHhc
Confidence 788888888855332 2 1334567779999999988888774
No 142
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=30.68 E-value=1.6e+02 Score=19.35 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=27.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~ 41 (103)
....|.++.+.. ..+.|+.++|+.++-+.+...+
T Consensus 7 ~~~sf~lp~~s~-k~v~IsS~tTt~eVI~~LL~KF 40 (96)
T cd01778 7 TSTSLPLPKDTA-KHLHISSKTTVREVIEALLKKF 40 (96)
T ss_pred EEEEEeccCCce-eEEEEecCCcHHHHHHHHHHhh
Confidence 456788877744 4689999999999999988883
No 143
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=27.53 E-value=1.3e+02 Score=17.29 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=31.5
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+| .++++....||.+|=+.+. ++ ....-+.++|.++.-.. -.+.-+.+||
T Consensus 5 vNG---~~~~~~~~~tl~~lL~~l~--~~---------~~~vav~vNg~iv~r~~-~~~~~l~~gD 55 (66)
T PRK05659 5 LNG---EPRELPDGESVAALLAREG--LA---------GRRVAVEVNGEIVPRSQ-HASTALREGD 55 (66)
T ss_pred ECC---eEEEcCCCCCHHHHHHhcC--CC---------CCeEEEEECCeEeCHHH-cCcccCCCCC
Confidence 467 3568888888887654432 45 66777888897775221 1123466775
No 144
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=27.23 E-value=95 Score=24.83 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=38.5
Q ss_pred EEeCCcchHHHHHHHHHhh-CCCCCccCCCCCcceEEEecCeecCCCCcccccC
Q 034110 22 FRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK 74 (103)
Q Consensus 22 ~~v~~~~tV~~lK~~i~~~-~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 74 (103)
+.++..+||..||..+..+ |- + ....++-++|.+..|.+..||.+.-
T Consensus 168 vrcsa~~Tv~hlkkfl~~k~~~-----~-~~~~~idi~~~d~~l~~~~TLk~i~ 215 (331)
T KOG2660|consen 168 LRCSAAATVNHLKKFLRKKMDN-----L-SNKSEIDILCEEELLGDYYTLKDIA 215 (331)
T ss_pred EeccHHHHHHHHHHHHHHHhcc-----c-cchhhheeecCCccccchhhhhhhh
Confidence 5778899999999999988 41 1 1278889999999999999999643
No 145
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=25.88 E-value=1.5e+02 Score=17.62 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=34.2
Q ss_pred EEEEEEeCCCCe---eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE
Q 034110 7 IDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (103)
Q Consensus 7 v~l~~~~~~g~~---~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI 58 (103)
..||+-..++.. ...+.+++++|+.+|-+.+.+.+- ++.++..-.|.
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~-----l~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFG-----LAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTT-----TSSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhC-----CCCCCCCEEEE
Confidence 457777777741 567999999999999999998842 12346667773
No 146
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=25.73 E-value=72 Score=19.85 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.6
Q ss_pred EEeCCcchHHHHHHHHHhh
Q 034110 22 FRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 22 ~~v~~~~tV~~lK~~i~~~ 40 (103)
+-..++.|+.+|++.|.++
T Consensus 7 hlt~~~~tl~~L~~eI~~~ 25 (73)
T PF10407_consen 7 HLTDPNNTLSQLKEEIEER 25 (73)
T ss_pred EEeCCCCcHHHHHHHHHHH
Confidence 3467899999999999998
No 147
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=25.64 E-value=65 Score=25.15 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=24.7
Q ss_pred EeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCe
Q 034110 23 RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (103)
Q Consensus 23 ~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk 62 (103)
.+++++|.+.||..|+.. .+++.|-|.-|
T Consensus 301 vL~~~mtLaTVr~~~WK~-----------~~di~L~YR~k 329 (331)
T PF11816_consen 301 VLPPDMTLATVRTFIWKS-----------SGDIVLHYRRK 329 (331)
T ss_pred EcCCcCCHHHHHHhhccC-----------CCeEEEEEEec
Confidence 467999999999999987 78888888654
No 148
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=25.27 E-value=2.6e+02 Score=20.81 Aligned_cols=47 Identities=13% Similarity=0.232 Sum_probs=32.2
Q ss_pred ceEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE
Q 034110 5 ELIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (103)
Q Consensus 5 ~~v~l~~~~~~g--~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI 58 (103)
..+.|+|+-... .....++++..+|-.+|-+.|++.+- .+|+.+||.
T Consensus 175 nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~-------~dP~~lr~~ 223 (249)
T PF12436_consen 175 NRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLN-------VDPEHLRFF 223 (249)
T ss_dssp HEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHT-------S-GGGEEEE
T ss_pred CeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHC-------CChHHEEEE
Confidence 367888888432 23457899999999999999999943 128888884
No 149
>PRK04966 hypothetical protein; Provisional
Probab=23.13 E-value=47 Score=20.76 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=23.4
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
|.+.+|.+.+..+.+-...|.++|+.+..-
T Consensus 20 fv~ReGTdyG~~E~sl~~kv~qv~~qL~~G 49 (72)
T PRK04966 20 FVLREGTDYGEHERSLEQKVADVKRQLQSG 49 (72)
T ss_pred HHhccCccCCcccccHHHHHHHHHHHHHcC
Confidence 445688777777888888999999988854
No 150
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=22.71 E-value=1.9e+02 Score=17.43 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=24.3
Q ss_pred EEEEeCC--CCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 9 IKFRLYD--GSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 9 l~~~~~~--g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
||+-..+ +.....+.++.++|..+|-+.+.+.
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k 35 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKK 35 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHH
Confidence 3444444 2255679999999999999999988
No 151
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=22.43 E-value=1.2e+02 Score=20.66 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=30.2
Q ss_pred EeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccc
Q 034110 23 RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQ 72 (103)
Q Consensus 23 ~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~ 72 (103)
-|..+.||+++...|..++. .+++.+=|..++-++..+.++++
T Consensus 46 lVP~d~tV~qF~~iIRkrl~-------l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALG-------TSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcC-------CChhHEEEEECCccCCccchHHH
Confidence 68999999999999998844 22666544444445566677775
No 152
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=22.17 E-value=1.9e+02 Score=17.37 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=35.6
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCccc
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVG 71 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~ 71 (103)
.+++-+++| +...+.+-|+.||.++=+++-+. +. ++.-..++.-..+.|..++..+
T Consensus 2 ~~~v~LP~~-q~t~V~vrpg~ti~d~L~~~~~kr~L~-------~~~~~V~~~~~~k~l~~~~d~~ 59 (71)
T PF02196_consen 2 TCRVHLPNG-QRTVVQVRPGMTIRDALSKACKKRGLN-------PECCDVRLVGEKKPLDWDQDSS 59 (71)
T ss_dssp EEEEEETTT-EEEEEEE-TTSBHHHHHHHHHHTTT---------CCCEEEEEEEEEEEE-TTSBGG
T ss_pred eEEEECCCC-CEEEEEEcCCCCHHHHHHHHHHHcCCC-------HHHEEEEEcCCCccccCCCcee
Confidence 367888999 55678999999999988888777 32 1122333333566776665544
No 153
>PRK01777 hypothetical protein; Validated
Probab=21.27 E-value=2.4e+02 Score=18.16 Aligned_cols=65 Identities=9% Similarity=0.092 Sum_probs=36.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.|+|-+-+.+.-....+++.+++||.++=+.+ .|+.+..++ +.+...+.-.|+...-+. -+.+||
T Consensus 5 ~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s--gi~~~~pei--~~~~~~vgI~Gk~v~~d~-----~L~dGD 69 (95)
T PRK01777 5 RVEVVYALPERQYLQRLTLQEGATVEEAIRAS--GLLELRTDI--DLAKNKVGIYSRPAKLTD-----VLRDGD 69 (95)
T ss_pred EEEEEEECCCceEEEEEEcCCCCcHHHHHHHc--CCCccCccc--ccccceEEEeCeECCCCC-----cCCCCC
Confidence 46666665655555678999999998753332 254221111 122345555677665443 455775
No 154
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=20.95 E-value=66 Score=17.19 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=11.3
Q ss_pred CcchHHHHHHHHHhh
Q 034110 26 SASTVDMLKQRIVSD 40 (103)
Q Consensus 26 ~~~tV~~lK~~i~~~ 40 (103)
.+.||.+||+.+.+.
T Consensus 2 ~sltV~~Lk~iL~~~ 16 (35)
T PF12949_consen 2 KSLTVAQLKRILDEH 16 (35)
T ss_dssp TT--SHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHc
Confidence 367899999999988
No 155
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=20.94 E-value=2.6e+02 Score=18.43 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=25.6
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
||+--.|+ .+..+.+..++||.+|-..+...
T Consensus 5 IRIFr~D~-Tf~Tls~~l~tTv~eli~~L~rK 35 (97)
T cd01775 5 IRVFRSDG-TFTTLSCPLNTTVSELIPQLAKK 35 (97)
T ss_pred EEEEecCC-cEEEEEcCCcCcHHHHHHHHHHh
Confidence 55555677 56679999999999999999988
No 156
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=20.45 E-value=2.5e+02 Score=18.12 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=23.8
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~~p 42 (103)
.+| +...+.|+.++|-.+|+.++.+.+.
T Consensus 20 ~GG-~tr~i~V~r~~s~~el~~kl~~~~~ 47 (97)
T cd06410 20 VGG-ETRIVSVDRSISFKELVSKLSELFG 47 (97)
T ss_pred cCC-ceEEEEEcCCCCHHHHHHHHHHHhC
Confidence 666 5567899999999999999999954
No 157
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=20.43 E-value=1.1e+02 Score=15.71 Aligned_cols=16 Identities=19% Similarity=0.181 Sum_probs=13.7
Q ss_pred cchHHHHHHHHHhh-CC
Q 034110 27 ASTVDMLKQRIVSD-WP 42 (103)
Q Consensus 27 ~~tV~~lK~~i~~~-~p 42 (103)
.+|+.+||+.+.+. +|
T Consensus 3 ~l~~~~Lk~~l~~~gl~ 19 (35)
T smart00513 3 KLKVSELKDELKKRGLS 19 (35)
T ss_pred cCcHHHHHHHHHHcCCC
Confidence 57899999999988 66
No 158
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=20.16 E-value=1.9e+02 Score=16.63 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=30.3
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+|+ +++++ ..|+.+|.+.+. ++ +..+.+-.+|+++.- ..-.+..+.+||
T Consensus 5 ~Ng~---~~~~~-~~tl~~Ll~~l~--~~---------~~~vavavN~~iv~~-~~~~~~~L~dgD 54 (65)
T PRK06488 5 VNGE---TLQTE-ATTLALLLAELD--YE---------GNWLATAVNGELVHK-EARAQFVLHEGD 54 (65)
T ss_pred ECCe---EEEcC-cCcHHHHHHHcC--CC---------CCeEEEEECCEEcCH-HHcCccccCCCC
Confidence 4673 34564 458888876653 33 556677888888852 222345577775
Done!