Query 034110
Match_columns 103
No_of_seqs 129 out of 1013
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:47:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034110.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034110hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 2.2E-30 7.5E-35 177.1 13.6 96 4-99 14-109 (126)
2 2gow_A HCG-1 protein, ubiquiti 99.9 1.1E-25 3.7E-30 153.5 11.7 93 4-101 15-108 (125)
3 1wgh_A Ubiquitin-like 3, HCG-1 99.9 2.1E-25 7.1E-30 150.4 12.4 92 4-100 14-106 (116)
4 1wgd_A Homocysteine-responsive 99.8 2.1E-19 7E-24 115.1 9.8 85 3-98 4-91 (93)
5 3phx_B Ubiquitin-like protein 99.8 5.1E-19 1.7E-23 109.5 10.0 74 6-95 4-79 (79)
6 4dwf_A HLA-B-associated transc 99.8 9.8E-19 3.3E-23 110.8 11.0 77 4-97 3-81 (90)
7 4eew_A Large proline-rich prot 99.8 8.6E-19 3E-23 110.6 10.3 72 4-92 15-88 (88)
8 2faz_A Ubiquitin-like containi 99.8 9.6E-19 3.3E-23 107.9 10.2 74 6-94 2-78 (78)
9 4fbj_B NEDD8; effector-HOST ta 99.8 9E-19 3.1E-23 111.3 9.1 74 8-97 2-77 (88)
10 3dbh_I NEDD8; cell cycle, acti 99.8 1E-18 3.5E-23 109.7 9.2 77 4-96 10-88 (88)
11 2uyz_B Small ubiquitin-related 99.8 1.1E-18 3.7E-23 108.0 9.1 76 5-96 2-79 (79)
12 2kan_A Uncharacterized protein 99.8 1.7E-18 5.7E-23 111.8 10.2 77 5-98 14-93 (94)
13 1wy8_A NP95-like ring finger p 99.8 2.5E-18 8.6E-23 108.5 10.6 80 4-98 5-87 (89)
14 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 2.9E-18 9.8E-23 107.7 10.8 78 4-97 5-84 (87)
15 2daf_A FLJ35834 protein; hypot 99.8 7.9E-19 2.7E-23 118.5 8.6 79 4-97 13-93 (118)
16 2kdb_A Homocysteine-responsive 99.8 6.1E-19 2.1E-23 115.5 7.8 76 4-90 21-99 (99)
17 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 1.7E-18 5.9E-23 110.6 9.8 78 7-100 2-81 (96)
18 4hcn_B Polyubiquitin, ubiquiti 99.8 2.2E-18 7.6E-23 111.4 9.8 76 5-96 21-98 (98)
19 3plu_A Ubiquitin-like modifier 99.8 2.2E-18 7.4E-23 112.2 9.4 71 4-90 19-91 (93)
20 2wyq_A HHR23A, UV excision rep 99.8 3.8E-18 1.3E-22 106.5 9.9 81 5-96 4-84 (85)
21 2dzi_A Ubiquitin-like protein 99.8 4E-18 1.4E-22 105.3 9.2 76 3-94 4-81 (81)
22 3mtn_B UBA80, ubcep1, ubiquiti 99.8 4.9E-18 1.7E-22 105.6 9.7 77 5-97 2-80 (85)
23 3n3k_B Ubiquitin; hydrolase, p 99.8 2.9E-18 1E-22 106.7 8.6 76 6-97 3-80 (85)
24 3v6c_B Ubiquitin; structural g 99.8 5.3E-18 1.8E-22 108.0 9.9 74 4-93 15-90 (91)
25 1uh6_A Ubiquitin-like 5; beta- 99.8 2.9E-18 9.9E-23 112.9 8.8 72 4-91 26-99 (100)
26 1ndd_A NEDD8, protein (ubiquit 99.8 5.8E-18 2E-22 102.9 9.6 73 8-96 2-76 (76)
27 4a20_A Ubiquitin-like protein 99.8 4.1E-18 1.4E-22 111.4 9.4 78 4-94 17-97 (98)
28 1wju_A NEDD8 ultimate buster-1 99.8 3.5E-18 1.2E-22 112.5 9.0 73 6-95 15-93 (100)
29 2hj8_A Interferon-induced 17 k 99.8 2.5E-18 8.4E-23 109.2 7.7 76 6-97 4-81 (88)
30 1we7_A SF3A1 protein; structur 99.8 6.8E-18 2.3E-22 112.2 9.9 79 5-99 24-114 (115)
31 3a9j_A Ubiquitin; protein comp 99.8 1E-17 3.5E-22 101.8 9.9 73 8-96 2-76 (76)
32 2lxa_A Ubiquitin-like protein 99.7 2E-18 6.9E-23 110.6 6.7 75 7-95 2-80 (87)
33 1wyw_B Ubiquitin-like protein 99.7 5.8E-18 2E-22 109.5 8.7 76 5-96 20-97 (97)
34 2kk8_A Uncharacterized protein 99.7 5.4E-18 1.9E-22 107.4 8.3 72 6-93 10-84 (84)
35 1yqb_A Ubiquilin 3; structural 99.7 9.5E-18 3.2E-22 109.3 9.5 77 4-97 20-98 (100)
36 3vdz_A Ubiquitin-40S ribosomal 99.7 1.2E-17 3.9E-22 110.6 9.9 76 5-96 34-111 (111)
37 1sif_A Ubiquitin; hydrophobic 99.7 8.5E-18 2.9E-22 106.8 8.7 76 6-97 9-86 (88)
38 2bwf_A Ubiquitin-like protein 99.7 2.2E-17 7.7E-22 101.0 10.2 70 7-93 5-76 (77)
39 1uel_A HHR23B, UV excision rep 99.7 2.2E-17 7.7E-22 106.1 10.3 80 8-98 2-81 (95)
40 1wia_A Hypothetical ubiquitin- 99.7 2.3E-17 8E-22 105.7 10.3 80 2-98 3-83 (95)
41 3m62_B UV excision repair prot 99.7 7E-18 2.4E-22 110.9 7.9 75 7-95 2-76 (106)
42 1wx8_A Riken cDNA 4931431F19; 99.7 7.4E-18 2.5E-22 108.1 7.5 77 4-97 15-93 (96)
43 2fnj_B Transcription elongatio 99.7 1.4E-17 4.9E-22 112.4 8.6 76 6-92 2-80 (118)
44 1j8c_A Ubiquitin-like protein 99.7 4E-17 1.4E-21 110.5 10.7 78 4-98 30-109 (125)
45 2klc_A Ubiquilin-1; ubiquitin- 99.7 4E-17 1.4E-21 106.4 10.2 76 4-96 23-100 (101)
46 4ajy_B Transcription elongatio 99.7 2.4E-17 8.3E-22 111.3 9.3 78 6-94 2-82 (118)
47 1we6_A Splicing factor, putati 99.7 2.2E-17 7.5E-22 109.0 8.8 78 5-98 26-109 (111)
48 1ttn_A DC-UBP, dendritic cell- 99.7 4.1E-17 1.4E-21 107.0 9.7 76 5-96 22-99 (106)
49 1wx7_A Ubiquilin 3; ubiquitin- 99.7 4.8E-17 1.6E-21 106.4 9.9 77 4-97 15-93 (106)
50 3rt3_B Ubiquitin-like protein 99.7 4.2E-17 1.4E-21 112.5 10.1 76 6-97 81-158 (159)
51 2kdi_A Ubiquitin, vacuolar pro 99.7 6E-17 2E-21 107.8 10.2 77 5-97 8-86 (114)
52 1yx5_B Ubiquitin; proteasome, 99.7 6.7E-17 2.3E-21 104.0 9.9 74 8-97 2-77 (98)
53 2l7r_A Ubiquitin-like protein 99.7 2.7E-17 9.3E-22 105.6 7.8 73 6-96 19-93 (93)
54 1v2y_A 3300001G02RIK protein; 99.7 2.6E-17 9E-22 109.0 7.7 86 4-96 5-99 (105)
55 2ojr_A Ubiquitin; lanthide-bin 99.7 1.1E-16 3.7E-21 105.7 10.3 76 5-96 34-111 (111)
56 3l0w_B Monoubiquitinated proli 99.7 7.3E-17 2.5E-21 114.0 10.0 76 8-99 2-79 (169)
57 1v5o_A 1700011N24RIK protein; 99.7 8.8E-17 3E-21 104.7 9.4 77 5-96 6-88 (102)
58 3u5c_f 40S ribosomal protein S 99.7 1.2E-18 4.2E-23 121.8 0.1 77 8-100 2-80 (152)
59 3m63_B Ubiquitin domain-contai 99.7 2.7E-17 9.2E-22 107.4 6.2 73 5-94 27-101 (101)
60 1x1m_A Ubiquitin-like protein 99.7 1.9E-16 6.6E-21 104.0 9.1 81 5-97 11-104 (107)
61 3q3f_A Ribonuclease/ubiquitin 99.7 1.7E-16 5.9E-21 114.4 8.9 78 6-99 105-184 (189)
62 3b1l_X E3 ubiquitin-protein li 99.5 3.9E-18 1.3E-22 104.5 0.0 72 8-95 2-75 (76)
63 1wxv_A BAG-family molecular ch 99.7 6.5E-16 2.2E-20 98.4 9.5 76 4-96 5-88 (92)
64 3u30_A Ubiquitin, linear DI-ub 99.7 8.3E-16 2.8E-20 107.6 10.7 76 5-96 19-96 (172)
65 1wgg_A Ubiquitin carboxyl-term 99.6 6.4E-16 2.2E-20 100.0 8.5 73 4-94 5-80 (96)
66 2kd0_A LRR repeats and ubiquit 99.6 8.6E-16 2.9E-20 97.2 8.8 64 14-93 19-84 (85)
67 3b08_A Polyubiquitin-C, ubiqui 99.6 1.3E-15 4.5E-20 103.2 10.2 75 6-96 76-152 (152)
68 3u30_A Ubiquitin, linear DI-ub 99.6 7E-16 2.4E-20 107.9 8.5 75 6-96 96-172 (172)
69 4b6w_A Tubulin-specific chaper 99.6 1.8E-15 6E-20 96.6 9.6 76 6-94 2-85 (86)
70 1v5t_A 8430435I17RIK protein; 99.6 1E-15 3.6E-20 97.6 8.2 74 4-94 5-84 (90)
71 4dbg_A Ranbp-type and C3HC4-ty 99.6 2.9E-15 1E-19 99.2 10.4 74 7-95 25-102 (105)
72 3u5e_m 60S ribosomal protein L 99.6 2.6E-17 8.9E-22 111.2 0.1 74 8-97 2-77 (128)
73 3rt3_B Ubiquitin-like protein 99.6 2.1E-15 7.1E-20 104.0 9.7 71 7-93 3-77 (159)
74 1v86_A DNA segment, CHR 7, way 99.6 1.5E-15 5.2E-20 97.9 7.3 73 4-94 15-89 (95)
75 3b08_A Polyubiquitin-C, ubiqui 99.6 5.8E-15 2E-19 100.0 9.9 73 8-96 2-76 (152)
76 2kjr_A CG11242; UBL, ubiquitin 99.6 1.8E-14 6.1E-19 93.4 9.1 72 4-90 13-93 (95)
77 2dzj_A Synaptic glycoprotein S 99.6 9.5E-15 3.2E-19 93.4 7.7 69 6-89 10-85 (88)
78 1oqy_A HHR23A, UV excision rep 99.5 1.1E-14 3.9E-19 113.8 8.4 83 5-97 6-88 (368)
79 2xzm_9 RPS31E; ribosome, trans 99.5 6.1E-16 2.1E-20 111.7 0.3 73 8-99 2-74 (189)
80 2kj6_A Tubulin folding cofacto 99.5 3.9E-14 1.3E-18 92.2 8.6 74 4-92 12-95 (97)
81 3ai5_A Yeast enhanced green fl 99.5 3.2E-14 1.1E-18 109.1 9.2 73 5-93 232-306 (307)
82 1v6e_A Cytoskeleton-associated 99.5 7.9E-14 2.7E-18 89.6 8.4 78 4-94 5-89 (95)
83 2dzm_A FAS-associated factor 1 99.5 8.5E-14 2.9E-18 91.2 6.8 71 7-95 10-84 (100)
84 1t0y_A Tubulin folding cofacto 99.5 7E-13 2.4E-17 88.9 10.6 74 6-94 6-88 (122)
85 1wf9_A NPL4 family protein; be 99.4 2.1E-13 7.3E-18 89.5 7.2 76 4-94 5-96 (107)
86 2io1_B Small ubiquitin-related 99.4 8.1E-13 2.8E-17 85.4 8.6 78 4-97 5-84 (94)
87 3shq_A UBLCP1; phosphatase, hy 99.4 5.5E-13 1.9E-17 102.4 7.9 75 3-94 2-81 (320)
88 2io0_B Small ubiquitin-related 99.4 6.2E-12 2.1E-16 80.9 10.2 78 4-97 3-82 (91)
89 2d07_B Ubiquitin-like protein 99.3 1.2E-11 4.2E-16 79.6 10.2 76 5-96 16-93 (93)
90 2kzr_A Ubiquitin thioesterase 99.3 2.6E-12 8.9E-17 81.0 5.5 71 8-93 2-78 (86)
91 1wz0_A Ubiquitin-like protein 99.3 1.4E-11 4.7E-16 81.1 9.1 77 5-97 23-101 (104)
92 1wm3_A Ubiquitin-like protein 99.3 4.4E-11 1.5E-15 73.3 9.0 68 7-90 2-71 (72)
93 2k8h_A Small ubiquitin protein 99.2 2.6E-11 8.9E-16 80.6 7.9 76 5-96 25-102 (110)
94 2eke_C Ubiquitin-like protein 99.2 7.6E-11 2.6E-15 77.9 9.8 75 5-96 30-106 (106)
95 3a4r_A Nfatc2-interacting prot 99.2 1E-10 3.5E-15 73.0 8.9 71 4-90 5-78 (79)
96 1wjn_A Tubulin-folding protein 99.1 6.9E-10 2.3E-14 71.2 9.6 76 5-94 8-94 (97)
97 3kyd_D Small ubiquitin-related 98.9 2.2E-08 7.6E-13 67.0 9.5 74 5-94 39-114 (115)
98 3pge_A SUMO-modified prolifera 98.8 6.5E-08 2.2E-12 70.2 10.1 78 5-99 28-107 (200)
99 3tix_A Ubiquitin-like protein 98.6 1.9E-07 6.5E-12 67.8 8.3 77 5-98 56-134 (207)
100 4efo_A Serine/threonine-protei 98.3 4.2E-06 1.4E-10 54.1 8.0 56 11-74 18-75 (94)
101 3v7o_A Minor nucleoprotein VP3 98.2 2.7E-07 9.4E-12 67.7 0.2 79 4-97 19-97 (227)
102 2pjh_A Protein NPL4, nuclear p 98.1 1.2E-06 4.2E-11 54.6 2.4 65 6-79 4-73 (80)
103 3qx1_A FAS-associated factor 1 98.0 7.6E-05 2.6E-09 46.3 8.9 65 4-78 5-75 (84)
104 3uf8_A Ubiquitin-like protein 98.0 6E-05 2.1E-09 54.3 9.5 76 4-96 19-96 (209)
105 2jxx_A Nfatc2-interacting prot 98.0 9.9E-05 3.4E-09 47.7 9.4 69 4-79 23-91 (97)
106 3goe_A DNA repair protein RAD6 97.8 0.00021 7.2E-09 44.9 9.1 66 5-80 8-76 (82)
107 3ix6_A TS, tsase, thymidylate 97.7 5.6E-06 1.9E-10 64.6 -0.2 80 4-98 19-98 (360)
108 2dzk_A UBX domain-containing p 97.4 0.0016 5.5E-08 42.4 9.3 73 4-90 11-88 (109)
109 2cr5_A Reproduction 8; UBX dom 97.4 0.00088 3E-08 43.6 8.0 71 5-91 22-97 (109)
110 2bps_A YUKD protein; ubiquitin 97.4 0.00021 7E-09 44.9 4.6 70 7-79 5-76 (81)
111 1wj4_A KIAA0794 protein; UBX d 97.4 0.0014 4.8E-08 43.7 9.0 65 4-78 41-111 (124)
112 4da1_A Protein phosphatase 1K, 97.3 3.1E-05 1E-09 59.9 0.0 77 5-96 29-105 (389)
113 2l76_A Nfatc2-interacting prot 97.3 0.0028 9.4E-08 40.9 9.1 65 4-79 19-85 (95)
114 3ivf_A Talin-1; FERM domain, c 97.3 0.0026 8.8E-08 48.6 10.0 71 5-80 2-78 (371)
115 1s3s_G P47 protein; AAA ATPase 97.1 0.0026 9E-08 42.5 8.0 68 4-78 50-120 (127)
116 2kc2_A Talin-1, F1; FERM, adhe 96.9 0.0012 4.1E-08 44.7 4.7 71 8-79 13-115 (128)
117 4e71_A Plexin-B2, MM1; transme 96.5 0.031 1E-06 36.9 8.8 80 5-91 10-109 (111)
118 2r2o_A Plexin-B1; effector dom 96.4 0.03 1E-06 38.2 9.0 83 5-94 23-130 (138)
119 3h6n_A Plexin-D1; structural g 95.9 0.13 4.4E-06 34.6 9.8 67 19-92 18-104 (127)
120 4e74_A Plexin-A4; RBD, structu 95.0 0.18 6E-06 33.5 8.0 81 5-92 12-114 (117)
121 2al3_A TUG long isoform; TUG U 93.7 0.45 1.5E-05 30.1 7.4 70 8-93 11-82 (90)
122 3hm6_X Plexin-B1; structural g 93.2 0.74 2.5E-05 38.3 9.8 80 6-92 257-361 (644)
123 3kuz_A Plexin-C1; structural g 92.5 1.4 4.8E-05 29.5 8.8 78 6-90 19-124 (126)
124 3ig3_A Plxna3 protein; plexin 91.8 1.7 5.8E-05 36.1 10.2 81 6-93 233-335 (627)
125 4a3p_A Ubiquitin carboxyl-term 91.5 1.5 5.1E-05 31.1 8.7 53 19-78 141-200 (217)
126 2v1y_A Phosphatidylinositol-4, 89.5 0.74 2.5E-05 30.0 5.1 35 5-40 18-52 (108)
127 3jyu_A Ubiquitin carboxyl-term 89.3 4.5 0.00016 28.9 10.4 50 20-78 154-212 (231)
128 2y3a_A Phosphatidylinositol-4, 85.7 8.7 0.0003 33.8 10.8 80 4-93 49-137 (1092)
129 3ge3_C Toluene-4-monooxygenase 84.3 5.5 0.00019 24.8 7.7 71 7-79 4-76 (84)
130 2c7h_A RBBP6, retinoblastoma-b 82.0 7.1 0.00024 24.3 6.6 33 8-40 8-41 (86)
131 1vjk_A Molybdopterin convertin 79.0 7.2 0.00025 23.9 6.0 54 20-79 29-87 (98)
132 2q5w_D Molybdopterin convertin 78.5 3.3 0.00011 24.0 4.1 46 21-79 19-66 (77)
133 1wgr_A Growth factor receptor- 77.2 6.1 0.00021 25.2 5.3 62 5-74 8-76 (100)
134 3po0_A Small archaeal modifier 75.9 6.6 0.00022 23.4 5.0 54 20-79 20-78 (89)
135 2juo_A GA-binding protein alph 74.9 13 0.00044 23.3 6.7 68 21-99 6-74 (89)
136 2l32_A Small archaeal modifier 72.3 6.7 0.00023 23.3 4.3 49 8-68 2-50 (74)
137 1oey_A P67-PHOX, neutrophil cy 72.2 9.2 0.00031 23.5 5.0 38 18-62 14-51 (83)
138 1ryj_A Unknown; beta/alpha pro 71.8 12 0.00041 21.5 5.6 43 21-79 17-59 (70)
139 1ip9_A BEM1 protein; ubiquitin 68.6 14 0.00047 23.0 5.2 36 5-42 11-46 (85)
140 2kmm_A Guanosine-3',5'-BIS(dip 68.1 9.4 0.00032 21.6 4.3 29 9-40 3-31 (73)
141 2daj_A KIAA0977 protein, COBL- 66.4 19 0.00065 22.6 5.6 66 4-77 8-76 (91)
142 4eut_A Serine/threonine-protei 65.8 31 0.0011 25.4 7.7 54 11-74 316-373 (396)
143 2inc_C TOUB protein; DIIRON, 4 63.2 24 0.00081 21.8 8.9 57 21-79 16-75 (83)
144 2kvr_A Ubiquitin carboxyl-term 61.7 8.4 0.00029 25.3 3.5 31 21-60 59-91 (130)
145 3hhm_A Phosphatidylinositol-4, 61.3 10 0.00035 33.3 4.8 68 6-76 42-118 (1091)
146 3qa8_A MGC80376 protein; kinas 57.8 12 0.00042 30.9 4.6 55 14-76 319-374 (676)
147 3ivf_A Talin-1; FERM domain, c 56.3 59 0.002 24.1 8.8 74 6-92 85-167 (371)
148 3qij_A Protein 4.1; cytoskelet 54.0 17 0.00058 26.5 4.4 73 5-92 16-95 (296)
149 2i1j_A Moesin; FERM, coiled-co 53.5 87 0.003 25.2 9.9 75 5-93 3-84 (575)
150 1rws_A Hypothetical protein PF 52.1 5.5 0.00019 23.5 1.2 43 21-79 24-66 (77)
151 1vd2_A Protein kinase C, IOTA 51.2 41 0.0014 20.7 6.5 58 5-71 5-62 (89)
152 1f0z_A THis protein; ubiquitin 50.1 23 0.00079 19.9 3.7 51 14-79 5-55 (66)
153 1wz3_A Autophagy 12B, ATG12B, 49.5 38 0.0013 21.1 4.9 58 5-72 12-74 (96)
154 1fm0_D Molybdopterin convertin 49.2 35 0.0012 19.5 4.6 47 25-79 23-70 (81)
155 1h4r_A Merlin; FERM, neurofibr 44.8 84 0.0029 22.6 9.9 74 5-92 21-100 (314)
156 1wgk_A Riken cDNA 2900073H19 p 43.7 60 0.0021 20.6 7.3 24 21-44 33-59 (114)
157 2cu3_A Unknown function protei 42.1 33 0.0011 19.1 3.5 51 13-79 3-53 (64)
158 1ef1_A Moesin; membrane, FERM 40.8 94 0.0032 22.0 9.6 72 7-92 2-80 (294)
159 1tyg_B YJBS; alpha beta barrel 40.3 39 0.0013 20.6 3.8 51 14-79 25-76 (87)
160 4eo0_A Attachment protein G3P; 40.1 29 0.001 22.1 3.3 25 32-65 58-82 (115)
161 4gmv_A RAS-associated and plec 39.7 48 0.0017 24.4 4.9 35 5-40 30-64 (281)
162 3hvz_A Uncharacterized protein 39.1 54 0.0019 19.4 4.3 30 8-40 7-36 (78)
163 1q1o_A Cell division control p 37.9 51 0.0018 20.8 4.2 24 17-40 22-45 (98)
164 3au4_A Myosin-X; protein-prote 37.6 52 0.0018 25.9 5.1 35 5-40 215-249 (555)
165 2ylm_A Ubiquitin carboxyl-term 36.8 29 0.001 27.7 3.6 29 21-58 39-69 (530)
166 2hj1_A Hypothetical protein; s 35.4 79 0.0027 19.6 6.4 63 6-79 14-78 (97)
167 3hk0_A Growth factor receptor- 34.3 65 0.0022 23.3 4.8 35 5-40 7-41 (256)
168 2qjl_A URM1, ubiquitin-related 32.0 61 0.0021 19.6 3.8 28 16-43 18-47 (99)
169 3rpf_C Molybdopterin convertin 31.9 73 0.0025 18.1 7.6 49 21-79 15-63 (74)
170 3onh_A Ubiquitin-activating en 31.2 81 0.0028 20.8 4.4 57 21-80 9-73 (127)
171 3pvl_A Myosin VIIA isoform 1; 30.9 74 0.0025 26.1 5.1 36 5-41 262-297 (655)
172 3tca_A Amyloid beta A4 precurs 30.5 80 0.0027 22.0 4.7 34 6-40 34-67 (291)
173 1wwt_A Threonyl-tRNA synthetas 30.4 83 0.0028 18.3 4.6 35 3-40 6-41 (88)
174 3eud_A Protein SHQ1; CS domain 29.9 74 0.0025 20.7 4.0 34 52-90 60-93 (115)
175 2g1e_A Hypothetical protein TA 29.5 85 0.0029 18.1 6.1 57 21-79 18-79 (90)
176 3w1s_C Ubiquitin-like protein 27.3 1.1E+02 0.0038 18.7 5.7 60 4-72 6-69 (91)
177 4a6q_A Histone deacetylase com 27.2 54 0.0019 22.1 3.1 55 26-80 62-132 (143)
178 2vq5_A S-norcoclaurine synthas 24.5 27 0.00094 24.5 1.3 20 52-71 2-21 (201)
179 4dxa_B KREV interaction trappe 21.9 77 0.0026 23.0 3.4 30 6-36 5-36 (322)
180 3dwg_C 9.5 kDa culture filtrat 21.8 63 0.0021 19.1 2.4 56 22-79 21-82 (93)
181 2kl0_A Putative thiamin biosyn 21.2 1.3E+02 0.0044 17.3 3.7 50 14-79 5-54 (73)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.97 E-value=2.2e-30 Score=177.07 Aligned_cols=96 Identities=46% Similarity=0.808 Sum_probs=91.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
++.+.|+||+.+|++|.++++++++||++||++|+++||.++|++|+++++|||||+||+|+|+.||++|+|..|+||++
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 58899999999999998899999999999999999999999999997779999999999999999999999999999988
Q ss_pred eEEEEEEecCCCCCCc
Q 034110 84 VIIMHVVVQPSLAKTK 99 (103)
Q Consensus 84 ~~t~hlv~~~~~~~k~ 99 (103)
++|||||+++.++++|
T Consensus 94 v~tmhlVlrl~g~~kk 109 (126)
T 1se9_A 94 VTTMHVIIQAPVTEKE 109 (126)
T ss_dssp CEEEEEEECCCSSCCC
T ss_pred cEEEEEEeccCCcccc
Confidence 9999999999988776
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=153.46 Aligned_cols=93 Identities=23% Similarity=0.552 Sum_probs=83.9
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCC-CccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~-~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
.+.+.|+|++.+| +..+++|++++||++||++|++.||.+ .|++|.++++|||||+||+|+|+.||++|+|..+++
T Consensus 15 ~~~m~I~vktl~G-~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~-- 91 (125)
T 2gow_A 15 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT-- 91 (125)
T ss_dssp TTCEEEEEECTTS-CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSE--
T ss_pred CCeEEEEEEeCCC-CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc--
Confidence 3679999999999 566899999999999999999999999 488876699999999999999999999999998854
Q ss_pred ceEEEEEEecCCCCCCcCc
Q 034110 83 GVIIMHVVVQPSLAKTKTE 101 (103)
Q Consensus 83 ~~~t~hlv~~~~~~~k~~~ 101 (103)
+||||++++.+++++++
T Consensus 92 --~tlhlv~r~~~~~~~~~ 108 (125)
T 2gow_A 92 --TVMHLVARETLPEPNSQ 108 (125)
T ss_dssp --EEEEEEECSCCSSSSSC
T ss_pred --eEEEEEecCCCCccccc
Confidence 78999999998877754
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.93 E-value=2.1e-25 Score=150.38 Aligned_cols=92 Identities=23% Similarity=0.535 Sum_probs=82.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCC-ccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK-TIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~-e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
++.+.|+|++.+| +.++++|++++||++||++|+++||.|| |++|..+++|||||+||+|+|+.||++|+|..+++
T Consensus 14 ~~~m~I~vKtl~G-~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~-- 90 (116)
T 1wgh_A 14 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT-- 90 (116)
T ss_dssp SSSEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCE--
T ss_pred CCeEEEEEEeCCC-CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc--
Confidence 4689999999999 5568999999999999999999999994 67655599999999999999999999999988754
Q ss_pred ceEEEEEEecCCCCCCcC
Q 034110 83 GVIIMHVVVQPSLAKTKT 100 (103)
Q Consensus 83 ~~~t~hlv~~~~~~~k~~ 100 (103)
+||||++++.++.+++
T Consensus 91 --~tlhLvlr~~~~~~~~ 106 (116)
T 1wgh_A 91 --TVMHLVARETLPEPNS 106 (116)
T ss_dssp --EEEEEEECSSCSSSCC
T ss_pred --eEEEEEccCCCCCCCc
Confidence 7899999999887764
No 4
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.81 E-value=2.1e-19 Score=115.08 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=71.5
Q ss_pred CCceEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCccccc--CCCCCC
Q 034110 3 DEELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGE 79 (103)
Q Consensus 3 ~~~~v~l~~~~~~g~~-~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~--~i~~g~ 79 (103)
++..+.|.|+..+|.. ...+++++++||.+||++|++.+| ..+| +++|||||+||+|+|+.+|++| +|.++
T Consensus 4 ~~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~---~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~- 77 (93)
T 1wgd_A 4 GSSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYP---ERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKR- 77 (93)
T ss_dssp CSCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHST---TCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCS-
T ss_pred CCcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhc---CCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCC-
Confidence 4667999999998852 224567799999999999999864 2344 9999999999999999999999 99988
Q ss_pred CCCceEEEEEEecCCCCCC
Q 034110 80 VPGGVIIMHVVVQPSLAKT 98 (103)
Q Consensus 80 ~~~~~~t~hlv~~~~~~~k 98 (103)
.++||++++.+++.
T Consensus 78 -----~~i~lv~~~~gg~~ 91 (93)
T 1wgd_A 78 -----HVLHLVCNVKSGPS 91 (93)
T ss_dssp -----EEEEEECCCCCCCC
T ss_pred -----CEEEEEeCCCCCCC
Confidence 78999999887754
No 5
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.80 E-value=5.1e-19 Score=109.53 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=66.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
.++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~----- 68 (79)
T 3phx_B 4 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGLEGVQ---------DDLFWLTFEGKPLEDQLPLGEYGLKPL----- 68 (79)
T ss_dssp CEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTCCTT-----
T ss_pred CEEEEEEeCCCCEE-EEEECCcChHHHHHHHHHhhcCCC---------HHHEEEEECCEECCCCCcHHHCCCCCC-----
Confidence 46788888999654 68999999999999999988 66 999999999999999999999999998
Q ss_pred eEEEEEEecCCC
Q 034110 84 VIIMHVVVQPSL 95 (103)
Q Consensus 84 ~~t~hlv~~~~~ 95 (103)
.++|++++..|
T Consensus 69 -~~l~l~~rl~G 79 (79)
T 3phx_B 69 -STVFMNLRLRG 79 (79)
T ss_dssp -CEEEEEECCBC
T ss_pred -CEEEEEEecCC
Confidence 68999998754
No 6
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.79 E-value=9.8e-19 Score=110.76 Aligned_cols=77 Identities=18% Similarity=0.391 Sum_probs=67.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
...++|.++..+|..+ .+++++++||.+||++|++. +| +++|||||+||.|+|+.+|++|+| +|
T Consensus 3 ~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrLi~~Gk~L~d~~tL~~~~i-~g--- 68 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAASVSIP---------SEKQRLIYQGRVLQDDKKLQEYNV-GG--- 68 (90)
T ss_dssp CCEEEEEEEETTCCEE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTC-TT---
T ss_pred CcEEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHhCCC---------HHHEEEEECCeECCCCCCHHHcCC-CC---
Confidence 4568899999999654 78999999999999999988 55 999999999999999999999999 77
Q ss_pred CceEEEEEEecCCCCC
Q 034110 82 GGVIIMHVVVQPSLAK 97 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~~ 97 (103)
.++||+++++++.
T Consensus 69 ---~~i~l~~~~~~~~ 81 (90)
T 4dwf_A 69 ---KVIHLVERAPPQT 81 (90)
T ss_dssp ---EEEEEEECCCC--
T ss_pred ---cEEEEEecCCCCC
Confidence 7899999977554
No 7
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=110.60 Aligned_cols=72 Identities=19% Similarity=0.432 Sum_probs=65.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
.+.++|.++..+|.. ..+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+| +|
T Consensus 15 ~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i-~g--- 80 (88)
T 4eew_A 15 PDSLEVLVKTLDSQT-RTFIVGAQMNVKEFKEHIAASVSIP---------SEKQRLIYQGRVLQDDKKLQEYNV-GG--- 80 (88)
T ss_dssp CCEEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTC-TT---
T ss_pred CCeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHHHhCCC---------HHHEEEEECCEECCCCCcHHHcCC-CC---
Confidence 466899999999965 478999999999999999988 66 999999999999999999999999 68
Q ss_pred CceEEEEEEec
Q 034110 82 GGVIIMHVVVQ 92 (103)
Q Consensus 82 ~~~~t~hlv~~ 92 (103)
.++||++|
T Consensus 81 ---~~i~lv~R 88 (88)
T 4eew_A 81 ---KVIHLVER 88 (88)
T ss_dssp ---EEEEEEEC
T ss_pred ---cEEEEEEC
Confidence 78999976
No 8
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.79 E-value=9.6e-19 Score=107.88 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=66.8
Q ss_pred eEEEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 6 LIDIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~-v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
.+.|.++..+|+.+..++ +++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip---------~~~qrL~~~g~~L~d~~tL~~~~i~~g---- 68 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE---------PGLQRLFYRGKQMEDGHTLFDYEVRLN---- 68 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTTTTTCCTT----
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC----
Confidence 467888989997765788 99999999999999998 66 999999999999999999999999988
Q ss_pred ceEEEEEEecCC
Q 034110 83 GVIIMHVVVQPS 94 (103)
Q Consensus 83 ~~~t~hlv~~~~ 94 (103)
.++|++++++
T Consensus 69 --~~i~l~~r~~ 78 (78)
T 2faz_A 69 --DTIQLLVRQS 78 (78)
T ss_dssp --CEEEEEECCC
T ss_pred --CEEEEEEeCC
Confidence 6899999864
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.78 E-value=9e-19 Score=111.30 Aligned_cols=74 Identities=27% Similarity=0.412 Sum_probs=65.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
.|.++..+|+.+ .+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i~~g------~ 65 (88)
T 4fbj_B 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG------S 65 (88)
T ss_dssp EEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTTTTTCCTT------C
T ss_pred EEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------hhHEEEEECCeECCCCCcHHHcCCCCC------C
Confidence 578888899665 78999999999999999988 55 999999999999999999999999998 6
Q ss_pred EEEEEecCCCCC
Q 034110 86 IMHVVVQPSLAK 97 (103)
Q Consensus 86 t~hlv~~~~~~~ 97 (103)
++||+++..++.
T Consensus 66 ~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 66 VLHLVLALRGGG 77 (88)
T ss_dssp EEEEECBCC---
T ss_pred EEEEEEECCCCC
Confidence 899999988764
No 10
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=1e-18 Score=109.67 Aligned_cols=77 Identities=26% Similarity=0.403 Sum_probs=69.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
+..+.|.++..+|..+ .+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.++
T Consensus 10 ~~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~--- 76 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG--- 76 (88)
T ss_dssp CCCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCCEEETTEECCTTSBGGGGTCCTT---
T ss_pred CCcEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------HHHEEEEECCeECCCCCcHHHcCCCCC---
Confidence 4678999999999654 79999999999999999988 66 999999999999999999999999988
Q ss_pred CceEEEEEEecCCCC
Q 034110 82 GGVIIMHVVVQPSLA 96 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~ 96 (103)
.++|++++..++
T Consensus 77 ---~~i~l~~rl~GG 88 (88)
T 3dbh_I 77 ---SVLHLVLRLRGG 88 (88)
T ss_dssp ---CEEEECCCCCCC
T ss_pred ---CEEEEEEeCCCC
Confidence 689999998764
No 11
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.78 E-value=1.1e-18 Score=108.00 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=68.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.||++|+|.+|
T Consensus 2 ~~m~i~vk~~~g~~~-~~~v~~~~tv~~lk~~i~~~~gi~---------~~~qrL~~~G~~L~d~~tl~~~~i~~~---- 67 (79)
T 2uyz_B 2 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE---- 67 (79)
T ss_dssp CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCHHHHTCCTT----
T ss_pred CeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHHCCC---------cccEEEEECCEEeCCCCCHHHcCCCCC----
Confidence 568999999999665 68999999999999999998 66 999999999999999999999999999
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.++|++++..|+
T Consensus 68 --~~i~l~~~~~GG 79 (79)
T 2uyz_B 68 --DVIEVYQEQTGG 79 (79)
T ss_dssp --EEEEEEECCCC-
T ss_pred --CEEEEEEeccCC
Confidence 789999998764
No 12
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.78 E-value=1.7e-18 Score=111.82 Aligned_cols=77 Identities=17% Similarity=0.180 Sum_probs=69.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCC-CcccccCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVP 81 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~~ 81 (103)
..++|.++..+| . ..+++++++||.+||++|++. +| +++|||+|+||.|+|+ .+|++|+|.+|
T Consensus 14 ~~~~I~Vk~~~~-~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~~tL~~ygI~~g--- 79 (94)
T 2kan_A 14 RKIHVTVKFPSK-Q-FTVEVDRTETVSSLKDKIHIVENTP---------IKRMQLYYSGIELADDYRNLNEYGITEF--- 79 (94)
T ss_dssp CCEEEEEECSSC-E-EEEEECTTCBHHHHHHHHHHHSSSC---------TTTEEEEETTEEECCTTSBHHHHTCCTT---
T ss_pred CCEEEEEEcCCc-E-EEEEECCCCcHHHHHHHHHHHHCcC---------HHHEEEEECCEECCCCcccHHHCCCCCC---
Confidence 568888998887 4 578999999999999999998 55 9999999999999999 99999999988
Q ss_pred CceEEEEEEecCCCCCC
Q 034110 82 GGVIIMHVVVQPSLAKT 98 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~~k 98 (103)
.++||++++.++++
T Consensus 80 ---stl~lv~r~~gg~~ 93 (94)
T 2kan_A 80 ---SEIVVFLKSINRAK 93 (94)
T ss_dssp ---EEEEEEECCCSSCC
T ss_pred ---CEEEEEEeCCCCCC
Confidence 78999999988754
No 13
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=2.5e-18 Score=108.51 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=70.5
Q ss_pred CceEEEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~-~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (103)
.+.+.|.++..+|...+.+ ++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~gk~L~d~~tL~~~~i~~g-- 73 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR---------PECQRLFYRGKQLENGYTLFDYDVGLN-- 73 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC---------TTTEEEEETTEECCSSSBHHHHTCCTT--
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCeECCCCCCHHHCCCCCC--
Confidence 5678999999988434478 599999999999999998 55 999999999999999999999999988
Q ss_pred CCceEEEEEEecCCCCCC
Q 034110 81 PGGVIIMHVVVQPSLAKT 98 (103)
Q Consensus 81 ~~~~~t~hlv~~~~~~~k 98 (103)
.++||++++.++..
T Consensus 74 ----~~i~l~~~~~gG~~ 87 (89)
T 1wy8_A 74 ----DIIQLLVRPDSGPS 87 (89)
T ss_dssp ----CEEEEEECCCCSSC
T ss_pred ----CEEEEEEeCCCCCC
Confidence 68999999887753
No 14
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.78 E-value=2.9e-18 Score=107.69 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=70.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
...++|.++..+|+. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 5 ~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~gi~---------~~~qrL~~~Gk~L~d~~tL~~~~i~~g--- 71 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIEDQQGLP---------KKQQQLEFQGQVLQDWLGLGIYGIQDS--- 71 (87)
T ss_dssp SSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHHHTCCC---------TTTEEEEETTEECCSSSBHHHHTCCTT---
T ss_pred CCCEEEEEEcCCCCE-EEEEeCCCChHHHHHHHHHHHhCCC---------hHHEEEEECCEEccCCCCHHHCCCCCC---
Confidence 467889999999954 478999999999999999998 55 999999999999999999999999988
Q ss_pred CceEEEEEEecCCCCC
Q 034110 82 GGVIIMHVVVQPSLAK 97 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~~ 97 (103)
.++|++++..++.
T Consensus 72 ---~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 72 ---DTLILSKKKGSGP 84 (87)
T ss_dssp ---EEEEEEECSCCCS
T ss_pred ---CEEEEEEeccCCC
Confidence 7899999988764
No 15
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=7.9e-19 Score=118.48 Aligned_cols=79 Identities=22% Similarity=0.235 Sum_probs=69.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
+..++|++++..+.+...++++++.||++||+++++. +| ++.|||||+||+|+|++||++|||.+|
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP---------~e~qrLIy~GKiLKD~eTL~~~gIk~g--- 80 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP---------HSVLQIRYSGKILKNNETLVQHGVKPQ--- 80 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC---------TTTEEEEETTEEECSSCCHHHHSCCSS---
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC---------hHHEEEEECCeEcCCcchHHHcCCCCC---
Confidence 4568888886654455689999999999999999998 66 999999999999999999999999999
Q ss_pred CceEEEEEEecCCCCC
Q 034110 82 GGVIIMHVVVQPSLAK 97 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~~ 97 (103)
.|+||+++...+.
T Consensus 81 ---~TIhLvi~s~~p~ 93 (118)
T 2daf_A 81 ---EIVQVEIFSTNPD 93 (118)
T ss_dssp ---CEEEEEEEESCTT
T ss_pred ---CEEEEEEecCCCc
Confidence 7899999977654
No 16
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.78 E-value=6.1e-19 Score=115.49 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=63.8
Q ss_pred CceEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCccccc--CCCCCCC
Q 034110 4 EELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGEV 80 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~-~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~--~i~~g~~ 80 (103)
+..+.|.|+..+|.. ...+++++++||.+||++|++.++ +.|+ +++|||||+||+|+|+.+|++| +|.++
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~----g~pp-~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~-- 93 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYP----SKPL-TKDQRLVYSGRLLPDHLQLKDILRKQDEY-- 93 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHST----TCCC-TTTCCEEETTEEECTTSBTHHHHTTTCSE--
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhc----CCCC-hhhEEEEECCEECCCCCCHHHHhcCCCCC--
Confidence 356999999998862 236889999999999999999865 2331 6999999999999999999999 99988
Q ss_pred CCceEEEEEE
Q 034110 81 PGGVIIMHVV 90 (103)
Q Consensus 81 ~~~~~t~hlv 90 (103)
.|||||
T Consensus 94 ----~tihLv 99 (99)
T 2kdb_A 94 ----HMVHLV 99 (99)
T ss_dssp ----EEEEEC
T ss_pred ----CEEEeC
Confidence 789985
No 17
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.78 E-value=1.7e-18 Score=110.63 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=66.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
.+|.++..+|..+ .+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+|
T Consensus 2 m~i~vk~~~g~~~-~~~v~~~~TV~~LK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~------ 65 (96)
T 3k9o_B 2 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 65 (96)
T ss_dssp CEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred cEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhhhCCC---------hhHEEEEECCEECCCCCcHHHcCCCCC------
Confidence 4688888999554 78999999999999999998 66 999999999999999999999999988
Q ss_pred EEEEEEecCCCCCCcC
Q 034110 85 IIMHVVVQPSLAKTKT 100 (103)
Q Consensus 85 ~t~hlv~~~~~~~k~~ 100 (103)
.++||+++..++.++.
T Consensus 66 ~~i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 66 STLHLVLRLRGYADLR 81 (96)
T ss_dssp CEEEEEECCCC-----
T ss_pred CEEEEEEEcCCCCccc
Confidence 6899999999886654
No 18
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.2e-18 Score=111.41 Aligned_cols=76 Identities=25% Similarity=0.388 Sum_probs=68.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
..++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 21 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i~~g---- 86 (98)
T 4hcn_B 21 RPMQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 86 (98)
T ss_dssp -CCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTCBSGGGTCCTT----
T ss_pred CeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHhCCC---------hhHEEEEECCEECCCCCcHHHCCCCCC----
Confidence 568899999999654 79999999999999999998 55 999999999999999999999999998
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.+|||+++..++
T Consensus 87 --~~i~l~~rl~GG 98 (98)
T 4hcn_B 87 --STLHLVLRLRGG 98 (98)
T ss_dssp --EEEEEECBCSCC
T ss_pred --CEEEEEEecCCC
Confidence 789999998764
No 19
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.77 E-value=2.2e-18 Score=112.18 Aligned_cols=71 Identities=11% Similarity=0.190 Sum_probs=64.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
++-++|.++...|+.+ .++++|++||++||++|+++ +| +++|||||+||+|+|+.||++|+|.+|
T Consensus 19 ~~mIqI~Vk~~~Gkk~-~v~v~p~DTI~~LK~~I~~k~Gip---------~~qQrLif~Gk~LkD~~TL~dY~I~dg--- 85 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKV-RVKCLGEDSVGDFKKVLSLQIGTQ---------PNKIVLQKGGSVLKDHISLEDYEVHDQ--- 85 (93)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBTGGGTCCTT---
T ss_pred CceEEEEEECCCCCEE-EEEECCcCHHHHHHHHHHHHhCCC---------HHHEEEEeCCEEccCcCCHHHcCCCCC---
Confidence 4568899999999765 69999999999999999988 65 999999999999999999999999999
Q ss_pred CceEEEEEE
Q 034110 82 GGVIIMHVV 90 (103)
Q Consensus 82 ~~~~t~hlv 90 (103)
+|+||.
T Consensus 86 ---stLhL~ 91 (93)
T 3plu_A 86 ---TNLELY 91 (93)
T ss_dssp ---CEEEEE
T ss_pred ---CEEEEE
Confidence 789985
No 20
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.77 E-value=3.8e-18 Score=106.53 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=65.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
..++|.++..+|+.+ .+++++++||.+||++|++.+. .+.+| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~~m~i~vk~~~g~~~-~~~v~~~~TV~~lK~~i~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g------ 72 (85)
T 2wyq_A 4 MAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEK------ 72 (85)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHHHC--TTTCC--GGGEEEEETTEECCTTSBGGGGCCCTT------
T ss_pred ceEEEEEEECCCCEE-EEEECCCCCHHHHHHHHHhhcc--ccCCC--HHHeEEEECCEECcCCCCHHHcCCCCC------
Confidence 357888999999654 7899999999999999999521 01233 999999999999999999999999988
Q ss_pred EEEEEEecCCCC
Q 034110 85 IIMHVVVQPSLA 96 (103)
Q Consensus 85 ~t~hlv~~~~~~ 96 (103)
.++|++.+++.+
T Consensus 73 ~~i~l~~~~~~~ 84 (85)
T 2wyq_A 73 NFVVVMVTKTKA 84 (85)
T ss_dssp SEEEEEEC----
T ss_pred CEEEEEEcCCCC
Confidence 689999887644
No 21
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=105.30 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=67.3
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCC
Q 034110 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (103)
Q Consensus 3 ~~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (103)
+.+.+.|+++..+|.. ..+++++++||++||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~~~~m~i~vk~~~g~~-~~~~v~~~~tV~~LK~~i~~~~~i~---------~~~qrL~~~gk~L~d~~tL~~~~i~~g-- 71 (81)
T 2dzi_A 4 GSSGMQLTVKALQGRE-CSLQVPEDELVSTLKQLVSEKLNVP---------VRQQRLLFKGKALADGKRLSDYSIGPN-- 71 (81)
T ss_dssp SSSSEEEEEEETTSCE-EEEEECSSCBHHHHHHHHHHHTCCC---------TTTCEEEETTEECCTTSBGGGGTCCSS--
T ss_pred CCCcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHHCcC---------HHHEEEEECCeECCCCCcHHHcCCCCC--
Confidence 3567889999888954 478999999999999999998 55 999999999999999999999999988
Q ss_pred CCceEEEEEEecCC
Q 034110 81 PGGVIIMHVVVQPS 94 (103)
Q Consensus 81 ~~~~~t~hlv~~~~ 94 (103)
.++|++++++
T Consensus 72 ----~~i~l~~~~~ 81 (81)
T 2dzi_A 72 ----SKLNLVVKPL 81 (81)
T ss_dssp ----BCCEEECCCC
T ss_pred ----CEEEEEEeCC
Confidence 6799998864
No 22
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.9e-18 Score=105.58 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=68.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.++|.++..+|.. ..+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.++
T Consensus 2 s~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~~i~---------~~~qrL~~~g~~L~d~~tL~~~~i~~~---- 67 (85)
T 3mtn_B 2 SHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKW---- 67 (85)
T ss_dssp -CEEEEEECTTSCE-EEEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTGGGTCCTT----
T ss_pred CeEEEEEEcCCCCE-EEEEECCCCCHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCCHHHcCCCCC----
Confidence 35788999999955 478999999999999999998 66 999999999999999999999999988
Q ss_pred ceEEEEEEecCCCCC
Q 034110 83 GVIIMHVVVQPSLAK 97 (103)
Q Consensus 83 ~~~t~hlv~~~~~~~ 97 (103)
.++|++++..+++
T Consensus 68 --~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 68 --STLFLLLRLRGGG 80 (85)
T ss_dssp --CEEEEECCCCCC-
T ss_pred --CEEEEEEECcCCC
Confidence 6899999988763
No 23
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.9e-18 Score=106.75 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=66.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
.++|.++..+|.. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 3 ~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~~ip---------~~~qrL~~~g~~L~d~~tL~~~~i~~~----- 67 (85)
T 3n3k_B 3 HMRIVVKTLMGRT-IILEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIHNH----- 67 (85)
T ss_dssp -CEEEEECGGGCE-EEEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETBEECCTTCBTTTTTCCTT-----
T ss_pred eEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHHCCC---------HHHEEEEECCeECCCCCCHHHCCCCCC-----
Confidence 4678888888855 478999999999999999998 66 999999999999999999999999988
Q ss_pred eEEEEEEecCCCCC
Q 034110 84 VIIMHVVVQPSLAK 97 (103)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (103)
.++|++++..+++
T Consensus 68 -~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 68 -SALYLLLKLRGGG 80 (85)
T ss_dssp -CEEEEEECCC---
T ss_pred -CEEEEEEeccCCC
Confidence 6899999988764
No 24
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.76 E-value=5.3e-18 Score=107.95 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=67.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
...++|.++..+|..+ .+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+|
T Consensus 15 ~~~m~i~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g--- 81 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE--- 81 (91)
T ss_dssp CCSEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTCBTGGGTCCTT---
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhhhCCC---------hhhEEEEECCeECCCcCcHHHCCCCCC---
Confidence 4578999999999654 78999999999999999998 66 999999999999999999999999999
Q ss_pred CceEEEEEEecC
Q 034110 82 GGVIIMHVVVQP 93 (103)
Q Consensus 82 ~~~~t~hlv~~~ 93 (103)
.++||+++.
T Consensus 82 ---~~i~l~~rl 90 (91)
T 3v6c_B 82 ---STLHLVLRL 90 (91)
T ss_dssp ---CEEEEECCC
T ss_pred ---CEEEEEEec
Confidence 689999875
No 25
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.76 E-value=2.9e-18 Score=112.85 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=65.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
++-++|.++...|+.+ .+++++++||++||++|++. +| +++|||||+||+|+|+.||++|+|.++
T Consensus 26 ~~mm~I~VKtl~Gk~i-~lev~p~dTV~~lK~~Ia~k~Gip---------~~qQrLi~~Gk~L~D~~TL~dygI~~g--- 92 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKV-RVKCNTDDTIGDLKKLIAAQTGTR---------WNKIVLKKWYTIFKDHVSLGDYEIHDG--- 92 (100)
T ss_dssp CCEEEEEEECSSSSCE-EEEEETTSBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCSSCBHHHHTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------HHHEEEEECCEECCCCCCHHHcCCCCC---
Confidence 4569999999989665 68999999999999999998 66 999999999999999999999999988
Q ss_pred CceEEEEEEe
Q 034110 82 GGVIIMHVVV 91 (103)
Q Consensus 82 ~~~~t~hlv~ 91 (103)
.|+||+-
T Consensus 93 ---stlhL~~ 99 (100)
T 1uh6_A 93 ---MNLELYY 99 (100)
T ss_dssp ---EEEEEEC
T ss_pred ---CEEEEEe
Confidence 7899863
No 26
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.76 E-value=5.8e-18 Score=102.94 Aligned_cols=73 Identities=27% Similarity=0.423 Sum_probs=64.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
+|+++..+|..+ .+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~~i~---------~~~q~L~~~g~~L~d~~tL~~~~i~~g------~ 65 (76)
T 1ndd_A 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG------S 65 (76)
T ss_dssp EEEEECTTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBGGGGTCCTT------C
T ss_pred EEEEECCCCCEE-EEEECCCChHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence 578888889554 78999999999999999988 66 999999999999999999999999988 6
Q ss_pred EEEEEecCCCC
Q 034110 86 IMHVVVQPSLA 96 (103)
Q Consensus 86 t~hlv~~~~~~ 96 (103)
++|++++..++
T Consensus 66 ~i~l~~~~~GG 76 (76)
T 1ndd_A 66 VLHLVLALRGG 76 (76)
T ss_dssp EEEEEECCC--
T ss_pred EEEEEEeCCCC
Confidence 89999998764
No 27
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.76 E-value=4.1e-18 Score=111.42 Aligned_cols=78 Identities=22% Similarity=0.451 Sum_probs=64.3
Q ss_pred CceEEEEEEeCCCCeeeeE--EeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCC-CCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPF--RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEV 80 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~--~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~ 80 (103)
++.+.|.|+..+|+.+ .+ ++++++||++||++|++... ++| +++|||||+||+|+|+.+|++|+| .+|
T Consensus 17 ~~~m~I~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~~~----gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g-- 87 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISEEK----ASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN-- 87 (98)
T ss_dssp -CCEEEEEEECSSSCE-EEEEEECTTCBHHHHHHHHHHTTS----CSC--GGGEEEEETTEEECTTCBGGGSCCBTTB--
T ss_pred CCCEEEEEEcCCCCEE-EEEEecCCCChHHHHHHHHHHHhc----CCC--hhhEEEEECCEECcCcCCHHHcCcCCCC--
Confidence 4679999999999643 45 66799999999999944321 344 999999999999999999999999 888
Q ss_pred CCceEEEEEEecCC
Q 034110 81 PGGVIIMHVVVQPS 94 (103)
Q Consensus 81 ~~~~~t~hlv~~~~ 94 (103)
.++||+++.+
T Consensus 88 ----~ti~lmvskp 97 (98)
T 4a20_A 88 ----STITVMIKPN 97 (98)
T ss_dssp ----CEEEEEECCC
T ss_pred ----CEEEEEEeCC
Confidence 6799988764
No 28
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.5e-18 Score=112.47 Aligned_cols=73 Identities=16% Similarity=0.119 Sum_probs=61.0
Q ss_pred eEEEEEEeCC----CCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 6 LIDIKFRLYD----GSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 6 ~v~l~~~~~~----g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
-..|++++.+ | ....+++++++||.+||++|++. +| +++|||||+||+|+|+.||++|+|.+|
T Consensus 15 ~ati~V~~~~~~~~~-~~~~lev~~~~TV~~lK~kI~~k~gip---------~~qQrLI~~GKiL~D~~TL~~y~I~~g- 83 (100)
T 1wju_A 15 IATIEVFLPPRLKKD-RKNLLETRLHITGRELRSKIAETFGLQ---------ENYIKIVINKKQLQLGKTLEEQGVAHN- 83 (100)
T ss_dssp EEEEEEECCTTTCCS-SSEEEEEESSSBHHHHHHHHHHHTTCC---------STTCEEEETTEECCTTSBHHHHTCCSS-
T ss_pred eEEEEEEecCCCCCC-cEEEEEeCCcCHHHHHHHHHHHHHCcC---------HHHeEEEeCCeECCCCCcHHHcCCCCC-
Confidence 3466667777 5 34579999999999999999999 55 999999999999999999999999999
Q ss_pred CCCceEEEEEEecCCC
Q 034110 80 VPGGVIIMHVVVQPSL 95 (103)
Q Consensus 80 ~~~~~~t~hlv~~~~~ 95 (103)
.++| ++++.+
T Consensus 84 -----sti~-vl~lrg 93 (100)
T 1wju_A 84 -----VKAM-VLELKQ 93 (100)
T ss_dssp -----EEEE-EECCCC
T ss_pred -----CEEE-EEEECC
Confidence 6774 454443
No 29
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=109.16 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=64.6
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
.++|.++..+|+. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~m~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~~I~~g----- 68 (88)
T 2hj8_A 4 PLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSGLEGVQ---------DDLFWLTFEGKPLEDQLPLGEYGLKPL----- 68 (88)
T ss_dssp EEEEEEEETTSCE-EEEEEESSSBHHHHHHHHHHHTCSC---------TTTEEEESSSSCCCTTSBHHHHHCSTT-----
T ss_pred cEEEEEECCCCCE-EEEEECCCCcHHHHHHHHHHHhCCC---------hhHEEEEECCEECCCCCcHHHcCCCCC-----
Confidence 4778888888955 478999999999999999998 55 999999999999999999999999988
Q ss_pred eEEEEEEecCCCCC
Q 034110 84 VIIMHVVVQPSLAK 97 (103)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (103)
.++||++++.+++
T Consensus 69 -~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 69 -STVFMNLRLRGGL 81 (88)
T ss_dssp -CEEEEEEC-----
T ss_pred -CEEEEEEEcCCCc
Confidence 6899999988764
No 30
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.75 E-value=6.8e-18 Score=112.15 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=70.4
Q ss_pred ceEEEEEEeCC----------CCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccc
Q 034110 5 ELIDIKFRLYD----------GSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQ 72 (103)
Q Consensus 5 ~~v~l~~~~~~----------g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~ 72 (103)
..|+|++++.+ | ....+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G-~~~~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrL~~~Gk~L~D~~tL~~ 93 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNG-QGLVFTLPLTDQVSVIKVKIHEATGMP---------AGKQKLQYEGIFIKDSNSLAY 93 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSS-EEEEEEECSCSBTHHHHHHHHHHSSCC---------TTTEEEEETTEEECTTSBHHH
T ss_pred CCEEEEEEcCCCccccccccCC-eEEEEEECCCCCHHHHHHHHHHHHCCC---------hHHEEEEECCEECCCCCCHHH
Confidence 47888888874 4 45679999999999999999998 55 999999999999999999999
Q ss_pred cCCCCCCCCCceEEEEEEecCCCCCCc
Q 034110 73 CKIPYGEVPGGVIIMHVVVQPSLAKTK 99 (103)
Q Consensus 73 ~~i~~g~~~~~~~t~hlv~~~~~~~k~ 99 (103)
|+|.+| .++||+++..++++|
T Consensus 94 y~i~~g------~~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 94 YNMASG------AVIHLALKERSGPSS 114 (115)
T ss_dssp HTCCSS------CEEEEEECCCSCCSC
T ss_pred CCCCCC------CEEEEEEEcCCCCCC
Confidence 999988 689999999988665
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.75 E-value=1e-17 Score=101.82 Aligned_cols=73 Identities=22% Similarity=0.345 Sum_probs=65.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
+|+++..+|.. ..+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~i~vk~~~g~~-~~i~v~~~~tv~~lK~~i~~~~~i~---------~~~q~L~~~g~~L~d~~tL~~~~i~~g------~ 65 (76)
T 3a9j_A 2 QIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQRE------S 65 (76)
T ss_dssp EEEEEETTSCE-EEEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTGGGTCCTT------C
T ss_pred EEEEEcCCCCE-EEEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEEECCeECCCCCcHHHcCCCCC------C
Confidence 57788888855 478999999999999999998 66 999999999999999999999999988 6
Q ss_pred EEEEEecCCCC
Q 034110 86 IMHVVVQPSLA 96 (103)
Q Consensus 86 t~hlv~~~~~~ 96 (103)
++|++++..|+
T Consensus 66 ~i~l~~~~~GG 76 (76)
T 3a9j_A 66 TLHLVLRLRGG 76 (76)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEeCCCC
Confidence 89999998775
No 32
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2e-18 Score=110.65 Aligned_cols=75 Identities=21% Similarity=0.447 Sum_probs=62.2
Q ss_pred EEEEEEeCCCCeeeeEEeC--CcchHHHHHHHH-HhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCC-CCCCCCC
Q 034110 7 IDIKFRLYDGSDIGPFRYS--SASTVDMLKQRI-VSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEVPG 82 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~--~~~tV~~lK~~i-~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~~~ 82 (103)
+.|.|+..+|..+ .++++ +++||.+||++| ++. +++| +++|||||+||+|+|+.+|++|+| .+|
T Consensus 2 mqI~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~---- 69 (87)
T 2lxa_A 2 VHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISEE-----KASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN---- 69 (87)
T ss_dssp CEEEEEECSSSCE-ECCEECCTTCBHHHHHHHHHHTT-----SCSS--STTEEEEETTEECCTTCBHHHHCCCGGG----
T ss_pred EEEEEEcCCCCEE-EEEEcCCCCCcHHHHHHHHHHHh-----cCCC--hHHEEEEECCEECcCcCCHHHcCCCCCC----
Confidence 4788999999654 56644 999999999999 655 1333 999999999999999999999999 567
Q ss_pred ceEEEEEEecCCC
Q 034110 83 GVIIMHVVVQPSL 95 (103)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (103)
+++||+.++.-
T Consensus 70 --stl~v~~~~~~ 80 (87)
T 2lxa_A 70 --STITVMIKPNL 80 (87)
T ss_dssp --CEEEEEECCCC
T ss_pred --CEEEEEcCCCc
Confidence 68999988763
No 33
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.75 E-value=5.8e-18 Score=109.49 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=69.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
..++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||||+|+.|+|+.||++|+|.+|
T Consensus 20 ~~m~I~Vk~~~g~~~-~l~v~~~~tv~~lK~~i~~~~gip---------~~~qrLif~Gk~L~d~~tl~dy~i~~g---- 85 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE---- 85 (97)
T ss_dssp CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCHHHHTCCTT----
T ss_pred CcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------hhhEEEEECCeEcCCCCCHHHCCCCCC----
Confidence 358999999999665 69999999999999999998 66 999999999999999999999999999
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.++||+++..|+
T Consensus 86 --~~I~l~~~~~GG 97 (97)
T 1wyw_B 86 --DVIEVYQEQTGG 97 (97)
T ss_dssp --CEEEEEESSSCC
T ss_pred --CEEEEEEecCCC
Confidence 689999998764
No 34
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=5.4e-18 Score=107.37 Aligned_cols=72 Identities=25% Similarity=0.350 Sum_probs=64.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCee-cCCCCcccccCCCCCCCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKI-LENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~-L~D~~tL~~~~i~~g~~~~ 82 (103)
-..|.++..+|+.+ .+++++++||++||++|++. +| +++|||||+|+. |+|+.+|++|+|.+|
T Consensus 10 ~~~i~vk~l~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~lL~D~~tL~~y~I~~g---- 75 (84)
T 2kk8_A 10 HMKFLVENLNGSSF-ELEVDYRDTLLVVKQKIERSQHIP---------VSKQTLIVDGIVILREDLTVEQCQIVPT---- 75 (84)
T ss_dssp CEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCCSSSBHHHHTCCTT----
T ss_pred ceEEEEEecCCcEE-EEEECCCChHHHHHHHHHHHHCcC---------hHHEEEEECCEEecCCcCCHHHcCCCCC----
Confidence 46788888999654 79999999999999999999 55 999999999999 999999999999988
Q ss_pred ceEEEEEEecC
Q 034110 83 GVIIMHVVVQP 93 (103)
Q Consensus 83 ~~~t~hlv~~~ 93 (103)
.++||+++|
T Consensus 76 --s~i~lv~~p 84 (84)
T 2kk8_A 76 --SDIQLEVSS 84 (84)
T ss_dssp --SCEEEEECC
T ss_pred --CEEEEEEcC
Confidence 679999875
No 35
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=9.5e-18 Score=109.32 Aligned_cols=77 Identities=23% Similarity=0.417 Sum_probs=69.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
...+.|.++..+| .+ .+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+|.+|
T Consensus 20 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~ygI~~g--- 85 (100)
T 1yqb_A 20 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQRFKAH---------PDQLVLIFAGKILKDPDSLAQCGVRDG--- 85 (100)
T ss_dssp TTEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBHHHHTCCTT---
T ss_pred CCeEEEEEEcCCC-cE-EEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHCCCCCC---
Confidence 4678999999998 44 78999999999999999998 66 999999999999999999999999988
Q ss_pred CceEEEEEEecCCCCC
Q 034110 82 GGVIIMHVVVQPSLAK 97 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~~ 97 (103)
.++||+++..+++
T Consensus 86 ---stI~l~~r~~~~p 98 (100)
T 1yqb_A 86 ---LTVHLVIKRQHRA 98 (100)
T ss_dssp ---CEEEEEECCCCSC
T ss_pred ---CEEEEEEcCCCCC
Confidence 6899999987654
No 36
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.74 E-value=1.2e-17 Score=110.63 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=68.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
..++|+++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 34 ~~m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~~gI~~g---- 99 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 99 (111)
T ss_dssp GCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTTTTTCCTT----
T ss_pred ccEEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHHhCCC---------hHHEEEEECCEECCCCCcHHHCCCCCC----
Confidence 468899999999654 79999999999999999998 66 999999999999999999999999988
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.++||+++..++
T Consensus 100 --s~I~l~~rl~GG 111 (111)
T 3vdz_A 100 --STLHLVLRLRGG 111 (111)
T ss_dssp --CEEEEEECCCC-
T ss_pred --CEEEEEEecCCC
Confidence 689999998764
No 37
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=8.5e-18 Score=106.77 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=63.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
...|.++..+|+. ..+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+|
T Consensus 9 ~~~i~v~~~~G~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g----- 73 (88)
T 1sif_A 9 GLQLFIKTLTGKT-FTVEMEPSDTIENLKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 73 (88)
T ss_dssp -CEEEEEETTSCE-EEEECCTTSBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBSGGGTCCTT-----
T ss_pred ceEEEEEeCCCCE-EEEEECCCChHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCcHHHcCCCCC-----
Confidence 3578889999955 478999999999999999998 66 999999999999999999999999988
Q ss_pred eEEEEEEecCCCCC
Q 034110 84 VIIMHVVVQPSLAK 97 (103)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (103)
.++||++++.+++
T Consensus 74 -~~i~l~~r~~GG~ 86 (88)
T 1sif_A 74 -STLHLVLRLRGGG 86 (88)
T ss_dssp -CEEEEEC------
T ss_pred -CEEEEEEeCCCCC
Confidence 6899999988763
No 38
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.74 E-value=2.2e-17 Score=101.00 Aligned_cols=70 Identities=30% Similarity=0.386 Sum_probs=62.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
++|+++. +|+ ...+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+|
T Consensus 5 m~i~vk~-~g~-~~~~~v~~~~tV~~LK~~i~~~~~i~---------~~~qrL~~~gk~L~d~~tL~~~~i~~g------ 67 (77)
T 2bwf_A 5 LNIHIKS-GQD-KWEVNVAPESTVLQFKEAINKANGIP---------VANQRLIYSGKILKDDQTVESYHIQDG------ 67 (77)
T ss_dssp EEEEEEE-TTE-EEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred EEEEEEE-CCE-EEEEEECCCCcHHHHHHHHHHHhCCC---------HHHEEEEECCeEcCCCCCHHHcCCCCC------
Confidence 7888888 774 4578999999999999999988 66 999999999999999999999999988
Q ss_pred EEEEEEecC
Q 034110 85 IIMHVVVQP 93 (103)
Q Consensus 85 ~t~hlv~~~ 93 (103)
.++|++.++
T Consensus 68 ~~i~l~~~~ 76 (77)
T 2bwf_A 68 HSVHLVKSQ 76 (77)
T ss_dssp CEEEEEECC
T ss_pred CEEEEEEcC
Confidence 689998765
No 39
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=2.2e-17 Score=106.13 Aligned_cols=80 Identities=26% Similarity=0.354 Sum_probs=66.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (103)
.|.++..+|..+ .+++++++||.+||++|++.+. .+++| +++|||||+||.|+|+.+|++|+|.+| .++
T Consensus 2 ~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------~~i 70 (95)
T 1uel_A 2 QVTLKTLQQQTF-KIDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEK------NFV 70 (95)
T ss_dssp EEEEEETTCCEE-EEECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSS------SEE
T ss_pred EEEEEeCCCCEE-EEEECCCCHHHHHHHHHHhhcc--cCCCC--hhhEEEEECCEECCCcCcHHHCCCCCC------CEE
Confidence 577888889654 7899999999999999998721 01233 999999999999999999999999988 689
Q ss_pred EEEecCCCCCC
Q 034110 88 HVVVQPSLAKT 98 (103)
Q Consensus 88 hlv~~~~~~~k 98 (103)
||+++.+.+++
T Consensus 71 ~l~~~~~~~~~ 81 (95)
T 1uel_A 71 VVMVTKPKAVS 81 (95)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99988665544
No 40
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=2.3e-17 Score=105.69 Aligned_cols=80 Identities=19% Similarity=0.336 Sum_probs=69.7
Q ss_pred CCCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCC-CcccccCCCCCCC
Q 034110 2 PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEV 80 (103)
Q Consensus 2 ~~~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g~~ 80 (103)
++++.+.|.++..+|+. ..+++++++||.+||++|++.. +++|||||+||.|+|+ .+|++|+|.+|
T Consensus 3 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i~~~~----------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g-- 69 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFPGQ----------ESQMKLIYQGRLLQDPARTLSSLNITNN-- 69 (95)
T ss_dssp CCCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSSST----------TTTCEEEETTEECCCSSCBTTTTTCCTT--
T ss_pred CCCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHhhC----------cCcEEEEECCEEccCCcCCHHHcCCCCC--
Confidence 34678999999999955 4789999999999999999873 7899999999999999 99999999988
Q ss_pred CCceEEEEEEecCCCCCC
Q 034110 81 PGGVIIMHVVVQPSLAKT 98 (103)
Q Consensus 81 ~~~~~t~hlv~~~~~~~k 98 (103)
.+|||+++.+.+..
T Consensus 70 ----~~i~l~~~~~~~~~ 83 (95)
T 1wia_A 70 ----CVIHCHRSPPGAAV 83 (95)
T ss_dssp ----EEEEEECCCCCCCC
T ss_pred ----CEEEEEECCCCCCC
Confidence 78999998765543
No 41
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.74 E-value=7e-18 Score=110.86 Aligned_cols=75 Identities=24% Similarity=0.418 Sum_probs=63.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEE
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t 86 (103)
++|.|+..+|+. +.+++++++||.+||++|++.+ ++| +++|||||+||+|+|+.+|++|+|.+| .+
T Consensus 2 m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~~~-----gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g------~~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEK-VPLDLEPSNTILETKTKLAQSI-----SCE--ESQIKLIYSGKVLQDSKTVSECGLKDG------DQ 67 (106)
T ss_dssp -CEEEECTTCCE-EEECCCTTSBHHHHHHHHHHTT-----TSC--GGGCEEEETTEECCTTSBTTTTTCCTT------CE
T ss_pred EEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHH-----CCC--hhhEEEEECCEECCCcCCHHHcCCCCC------CE
Confidence 467888888965 4789999999999999999982 233 999999999999999999999999999 68
Q ss_pred EEEEecCCC
Q 034110 87 MHVVVQPSL 95 (103)
Q Consensus 87 ~hlv~~~~~ 95 (103)
+||+++.+.
T Consensus 68 i~lv~~~~~ 76 (106)
T 3m62_B 68 VVFMVSQKK 76 (106)
T ss_dssp EEEECCC--
T ss_pred EEEEEcCCC
Confidence 999998554
No 42
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=7.4e-18 Score=108.08 Aligned_cols=77 Identities=25% Similarity=0.304 Sum_probs=68.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
++.++|+++.. |.. +.+++++++||.+||++|++. +| +++|||+|.|+.|+|+.+|++|+|.+|
T Consensus 15 ~~~m~i~Vk~~-g~~-~~~~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g--- 80 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDC-HEFFLAENSNVRRFKKQISKYLHCN---------ADRLVLIFTGKILRDQDILSQRGILDG--- 80 (96)
T ss_dssp SCEEEEEEECS-SSE-EEEEEETTCCHHHHHHHHHHHTCSC---------TTTBCCEETTEECCTTSCHHHHTCCTT---
T ss_pred CCcEEEEEEEC-CeE-EEEEECCCCCHHHHHHHHHHHhCCC---------HHHEEEEECCEECCCcCCHHHCCCCCC---
Confidence 35688888888 755 478999999999999999998 55 999999999999999999999999988
Q ss_pred CceEEEEEEecCCCCC
Q 034110 82 GGVIIMHVVVQPSLAK 97 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~~ 97 (103)
.+|||++++.+++
T Consensus 81 ---~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 81 ---STVHVVVRSHSGP 93 (96)
T ss_dssp ---EEEECCBCCSSCS
T ss_pred ---CEEEEEEeCCCCC
Confidence 7899999987654
No 43
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.73 E-value=1.4e-17 Score=112.41 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=60.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCC-CC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PG 82 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-~~ 82 (103)
++.|+++- |+....+++++++||.+||++|++. +| +++|||||+||+|+|+.||++|+|.+... +.
T Consensus 2 ~mfl~ir~--~ktti~lev~~sdTV~~lK~kI~~~egIP---------~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q 70 (118)
T 2fnj_B 2 DVFLMIRR--HKTTIFTDAKESSTVFELKRIVEGILKRP---------PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQ 70 (118)
T ss_dssp EEEEEEEE--BTEEEEEEEETTSBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBHHHHTCCTTTSBTT
T ss_pred cEEEEEec--CCEEEEEEeCCcChHHHHHHHHHHHhCCC---------HHHeEEEECCeECCCCCCHHHcCcccccccCC
Confidence 45666654 5444578999999999999999988 66 99999999999999999999999994110 00
Q ss_pred ceEEEEEEec
Q 034110 83 GVIIMHVVVQ 92 (103)
Q Consensus 83 ~~~t~hlv~~ 92 (103)
..+|+||+++
T Consensus 71 ~~stL~L~lr 80 (118)
T 2fnj_B 71 APATVGLAFR 80 (118)
T ss_dssp BCEEEEEEEB
T ss_pred CCCEEEEEec
Confidence 1189999999
No 44
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=4e-17 Score=110.46 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=65.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
+..++|.++.. |.. ..+++++++||.+||++|++. +| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 30 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~dygI~~g--- 95 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEK-EEFAVPENSSVQQFKEAISKRFKSQ---------TDQLVLIFAGKILKDQDTLIQHGIHDG--- 95 (125)
T ss_dssp CCCEEEEEECS-SCE-EEEEECTTCCHHHHHHHHHHHHCSC---------SSSEEEEETTEEESTTSCGGGTTCSSS---
T ss_pred CCcEEEEEEeC-CeE-EEEEECCCCcHHHHHHHHHHHHCcC---------cceEEEEECCEEcCCCCCHHHcCCCCC---
Confidence 45788999888 755 478999999999999999998 66 999999999999999999999999988
Q ss_pred CceEEEEEEecCCCCCC
Q 034110 82 GGVIIMHVVVQPSLAKT 98 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~~k 98 (103)
.+|||+++..++..
T Consensus 96 ---stI~lv~~~~gg~~ 109 (125)
T 1j8c_A 96 ---LTVHLVIKRDPNSS 109 (125)
T ss_dssp ---EEEEEEEC------
T ss_pred ---CEEEEEeccCCCCC
Confidence 78999999876643
No 45
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.72 E-value=4e-17 Score=106.42 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=67.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
...+.|.++.. |.. ..+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+|
T Consensus 23 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gI~~g--- 88 (101)
T 2klc_A 23 PKIMKVTVKTP-KEK-EEFAVPENSSVQQFKEEISKRFKSH---------TDQLVLIFAGKILKDQDTLSQHGIHDG--- 88 (101)
T ss_dssp CCCEEEEEECS-SCE-EEEEECSCCCHHHHHHHHHHHHTCC---------GGGEEEEETTEEECTTCCTGGGTCCTT---
T ss_pred CCeEEEEEEeC-CcE-EEEEECCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHcCCCCC---
Confidence 35688888888 644 578999999999999999998 66 999999999999999999999999988
Q ss_pred CceEEEEEEecCCCC
Q 034110 82 GGVIIMHVVVQPSLA 96 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~ 96 (103)
.++||++++++.
T Consensus 89 ---~~I~l~~~~~~~ 100 (101)
T 2klc_A 89 ---LTVHLVIKTQNR 100 (101)
T ss_dssp ---CEEEEEECCSSC
T ss_pred ---CEEEEEEcCCCC
Confidence 689999987654
No 46
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.72 E-value=2.4e-17 Score=111.30 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=63.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCC-CC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PG 82 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~-~~ 82 (103)
++.|+++- ++....+++++++||.+||++|++. +| +++|||||+||+|+|++||++|+|..+.. +.
T Consensus 2 ~vFl~Ikr--~ktTI~ldve~sdTV~~lK~kI~~~~giP---------p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q 70 (118)
T 4ajy_B 2 DVFLMIRR--HKTTIFTDAKESSTVFELKRIVEGILKRP---------PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQ 70 (118)
T ss_dssp EEEEEEEE--BTEEEEEEEETTSBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTTTTTCCGGGSBTT
T ss_pred ceEEEEec--CCEEEEEEcCCCChHHHHHHHHHHHHCCC---------HHHeEEEeCCeECCCcCCHHHcCCCcCcccCC
Confidence 45666654 4444568999999999999999988 66 99999999999999999999999998222 22
Q ss_pred ceEEEEEEecCC
Q 034110 83 GVIIMHVVVQPS 94 (103)
Q Consensus 83 ~~~t~hlv~~~~ 94 (103)
..+|+||++|..
T Consensus 71 ~~atl~Lvlr~~ 82 (118)
T 4ajy_B 71 APATVGLAFRAD 82 (118)
T ss_dssp BCEEEEEEECCS
T ss_pred CCCEEEEEEecC
Confidence 238999999963
No 47
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.72 E-value=2.2e-17 Score=108.95 Aligned_cols=78 Identities=19% Similarity=0.279 Sum_probs=69.5
Q ss_pred ceEEEEEEeC---CCCeeeeEEeCC-cchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCC
Q 034110 5 ELIDIKFRLY---DGSDIGPFRYSS-ASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (103)
Q Consensus 5 ~~v~l~~~~~---~g~~~~~~~v~~-~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g 78 (103)
..++|.+++. +|.. ..+++++ ++||.+||++|++. +| +++|||+|+|++|+|+.+|++|+|.+|
T Consensus 26 ~~i~i~Vk~~~~~~g~~-~~l~v~~l~~TV~~LK~~I~~~~gip---------~~~QrL~~~Gk~L~D~~tL~~y~I~~g 95 (111)
T 1we6_A 26 GPATIRVSKPNENDGQF-MEITVQSLSENVGSLKEKIAGEIQIP---------ANKQKLSGKAGFLKDNMSLAHYNVGAG 95 (111)
T ss_dssp SCEEEEECCTTCSSSCC-EEEEESCSSSBHHHHHHHHHHHTTCC---------TTTSEEECSSSBCCTTSBTTTTTCSSS
T ss_pred CcEEEEEEecccCCCcE-EEEEecCCCCcHHHHHHHHHHHHCCC---------HHHeEEEECCEECCCCCcHHHCCCCCC
Confidence 4688999988 7744 5789998 99999999999998 55 999999999999999999999999988
Q ss_pred CCCCceEEEEEEecCCCCCC
Q 034110 79 EVPGGVIIMHVVVQPSLAKT 98 (103)
Q Consensus 79 ~~~~~~~t~hlv~~~~~~~k 98 (103)
.++||+++..++++
T Consensus 96 ------~~l~l~~r~~GGk~ 109 (111)
T 1we6_A 96 ------EILTLSLRERSGPS 109 (111)
T ss_dssp ------CEEEEECSSCCSSC
T ss_pred ------CEEEEEEEcCCCCC
Confidence 68999999988753
No 48
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=4.1e-17 Score=106.99 Aligned_cols=76 Identities=22% Similarity=0.297 Sum_probs=67.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
..++|.++..+|+. +.+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 22 ~~m~I~Vk~~~g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~ygI~~g---- 87 (106)
T 1ttn_A 22 YECQLRLRLSTGKD-LKLVVRSTDTVFHMKRRLHAAEGVE---------PGSQRWFFSGRPLTDKMKFEELKIPKD---- 87 (106)
T ss_dssp CSEEEEEEETTTEE-EEEEECTTSHHHHHHHHHHHTTCCC---------STTCEEEETTEECCTTSHHHHCCCSSS----
T ss_pred CeEEEEEEcCCCCE-EEEEeCCCCcHHHHHHHHHHHHCcC---------cccEEEEECCEECCCCCcHHHcCCCCC----
Confidence 35889999999955 468999999999999999988 55 999999999999999999999999988
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.++||+++.+.+
T Consensus 88 --~ti~lv~~~~~~ 99 (106)
T 1ttn_A 88 --YVVQVIVSQPVQ 99 (106)
T ss_dssp --CEEEEECCCSSC
T ss_pred --CEEEEEEeCCCC
Confidence 689999986644
No 49
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=4.8e-17 Score=106.42 Aligned_cols=77 Identities=23% Similarity=0.417 Sum_probs=68.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
...++|+++..+| .+ .+++++++||.+||++|++. +| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 15 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gi~~g--- 80 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQRFKAH---------PDQLVLIFAGKILKDPDSLAQCGVRDG--- 80 (106)
T ss_dssp SSEEEEEEECSSC-EE-EEEEETTCCHHHHHHHHHHHHTCC---------TTTEEEEETTEECCTTSCHHHHTCCTT---
T ss_pred CceEEEEEEeCCC-cE-EEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHcCCCCC---
Confidence 3568899999888 44 78999999999999999998 66 999999999999999999999999988
Q ss_pred CceEEEEEEecCCCCC
Q 034110 82 GGVIIMHVVVQPSLAK 97 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~~ 97 (103)
.+|||+++..++.
T Consensus 81 ---~~i~l~~~~~~~~ 93 (106)
T 1wx7_A 81 ---LTVHLVIKRQHRA 93 (106)
T ss_dssp ---EEEEEEECCCCCS
T ss_pred ---CEEEEEEcCCCCC
Confidence 7899999877553
No 50
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.72 E-value=4.2e-17 Score=112.48 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=66.1
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
.+.|.++..+|+. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 81 ~m~i~vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~gip---------~~~q~L~~~G~~L~d~~tL~~y~i~~g----- 145 (159)
T 3rt3_B 81 PLSILVRNNKGRS-STYEVRLTQTVAHLKQQVSGLEGVQ---------DDLFWLTFEGKPLEDQLPLGEYGLKPL----- 145 (159)
T ss_dssp CEEEEEECTTSCE-EEEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTCCTT-----
T ss_pred cEEEEEECCCCCE-EEEEeCCCCCHHHHHHHHHHHHCCC---------HHHEEEEECCeecCCCCCHHHcCCCCC-----
Confidence 4567778888855 478999999999999999988 66 999999999999999999999999999
Q ss_pred eEEEEEEecCCCCC
Q 034110 84 VIIMHVVVQPSLAK 97 (103)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (103)
.++||+++..|++
T Consensus 146 -~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 146 -STVFMNLRLRGGG 158 (159)
T ss_dssp -CEEEEEECCC---
T ss_pred -CEEEEEEecCCCC
Confidence 6899999999875
No 51
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=6e-17 Score=107.81 Aligned_cols=77 Identities=23% Similarity=0.322 Sum_probs=69.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.+.|.++..+|+. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 8 ~~~~i~vk~l~G~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~ygI~~g---- 73 (114)
T 2kdi_A 8 GEFQIFAKTLTGKT-ITLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIWAGKQLEDGRTLSDYNIQRE---- 73 (114)
T ss_dssp CCCEEEEEETTCCE-EEEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTTTTTCCSS----
T ss_pred CcEEEEEEeCCCcE-EEEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCcHHHCCCCCC----
Confidence 45788899999955 578999999999999999998 66 999999999999999999999999988
Q ss_pred ceEEEEEEecCCCCC
Q 034110 83 GVIIMHVVVQPSLAK 97 (103)
Q Consensus 83 ~~~t~hlv~~~~~~~ 97 (103)
.++||++++.++.
T Consensus 74 --stI~l~~~~~GG~ 86 (114)
T 2kdi_A 74 --STLHLVLRLRGGS 86 (114)
T ss_dssp --CEEEEEECCCSSC
T ss_pred --CEEEEEEEcCCCc
Confidence 6899999988763
No 52
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.71 E-value=6.7e-17 Score=104.04 Aligned_cols=74 Identities=22% Similarity=0.351 Sum_probs=65.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
+|+++..+|.. ..+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~I~Vk~~~g~~-~~~~v~~~~TV~~LK~~I~~~~gi~---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~ 65 (98)
T 1yx5_B 2 QIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (98)
T ss_dssp EEEEEETTSCE-EEEECCTTCBHHHHHHHHHHHTCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred EEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC------C
Confidence 57888888955 478999999999999999998 55 999999999999999999999999988 6
Q ss_pred EEEEEecCCCCC
Q 034110 86 IMHVVVQPSLAK 97 (103)
Q Consensus 86 t~hlv~~~~~~~ 97 (103)
++|++++..++.
T Consensus 66 ~i~l~~~~~gG~ 77 (98)
T 1yx5_B 66 TLHLVLRLRGGR 77 (98)
T ss_dssp EEEEEECCCCC-
T ss_pred EEEEEEeCCCCC
Confidence 899999988654
No 53
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=2.7e-17 Score=105.58 Aligned_cols=73 Identities=19% Similarity=0.218 Sum_probs=63.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
.++|.++. |+. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 19 ~m~I~Vk~--g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~y~I~~g----- 81 (93)
T 2l7r_A 19 SMQLFVRA--QEL-HTFEVTGQETVAQIKAHVASLEGIA---------PEDQVVLLAGAPLEDEATLGQCGVEAL----- 81 (93)
T ss_dssp -CEEEEES--SSE-EEEECCSSCBHHHHHHHHHHHHTCC---------GGGCEEEETTEECCTTSBHHHHTCCSS-----
T ss_pred cEEEEEEC--CCE-EEEEeCCCCcHHHHHHHHHHHhCcC---------hhHEEEEECCEECCCCCcHHHCCCCCC-----
Confidence 45666665 644 579999999999999999998 66 999999999999999999999999988
Q ss_pred eEEEEEEecCCCC
Q 034110 84 VIIMHVVVQPSLA 96 (103)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (103)
.++||++++.++
T Consensus 82 -stI~lv~rl~GG 93 (93)
T 2l7r_A 82 -TTLEVAGRMLGG 93 (93)
T ss_dssp -CEEEEECCCCCC
T ss_pred -CEEEEEEecCCC
Confidence 689999998764
No 54
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=2.6e-17 Score=108.98 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=67.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCC------CCcceEEEecCeecC-CCCcccccC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPK------AVTEIKLISSGKILE-NNKTVGQCK 74 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~------~~~~qrLI~~Gk~L~-D~~tL~~~~ 74 (103)
..+..|+++..+|+.+ +++|++++||++||+.|++. +|.+-..-+. -.++|||||+|+.|. |+.||++|+
T Consensus 5 ~~~M~I~Vk~l~g~~~-~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVM-PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCcEEEEEEecCCCEE-EEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 4578999999999665 79999999999999999998 3300000000 015789999999996 679999999
Q ss_pred CCCCCCCCceEEEEEEecCCCC
Q 034110 75 IPYGEVPGGVIIMHVVVQPSLA 96 (103)
Q Consensus 75 i~~g~~~~~~~t~hlv~~~~~~ 96 (103)
|.+| .++|++++..+.
T Consensus 84 I~~g------~~l~lv~~lr~~ 99 (105)
T 1v2y_A 84 IRNR------DEVSFIKKLGQK 99 (105)
T ss_dssp CCSS------EEEEEEECSCSC
T ss_pred CCCC------CEEEEEehhccC
Confidence 9999 789999997654
No 55
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=105.72 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=68.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
..++|+++..+|..+ .+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+|
T Consensus 34 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gI~~g---- 99 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 99 (111)
T ss_dssp SCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------TTTEEEEETTEECCSSCBTTTTTCCTT----
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHHHCcC---------cccEEEEECCEECCCCCcHHHcCCCCC----
Confidence 468999999889554 78999999999999999998 66 999999999999999999999999988
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.++||+++..++
T Consensus 100 --s~I~l~~rl~GG 111 (111)
T 2ojr_A 100 --STLHLVLRLRGG 111 (111)
T ss_dssp --CEEEEEECCCC-
T ss_pred --CEEEEEEeCCCC
Confidence 689999998764
No 56
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.70 E-value=7.3e-17 Score=114.00 Aligned_cols=76 Identities=25% Similarity=0.381 Sum_probs=66.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
+|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 2 qI~Vk~~~Gk~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~y~I~~g------s 65 (169)
T 3l0w_B 2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (169)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------TTTEEEEETTEECCTTSBGGGGTCCTT------C
T ss_pred EEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHHHCcC---------HHHEEEEECCccccCcCcHHHcCCCCC------C
Confidence 578888999654 68999999999999999998 55 999999999999999999999999998 6
Q ss_pred EEEEEecCCCCCCc
Q 034110 86 IMHVVVQPSLAKTK 99 (103)
Q Consensus 86 t~hlv~~~~~~~k~ 99 (103)
++||+++..++.+.
T Consensus 66 tI~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 66 TLHLVLRLRGGGGE 79 (169)
T ss_dssp EEEEEECCCC---C
T ss_pred EEEEEEEecccccc
Confidence 89999999887654
No 57
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=8.8e-17 Score=104.75 Aligned_cols=77 Identities=8% Similarity=0.106 Sum_probs=65.5
Q ss_pred ceEEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCC-CcccccCCCCC
Q 034110 5 ELIDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYG 78 (103)
Q Consensus 5 ~~v~l~~~~~~g~---~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~-~tL~~~~i~~g 78 (103)
..+.|+++..+|. ..+.+++++++||.+||++|++. +| +++|||+|+|+.|+|+ .+|++|+|.+|
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~gk~L~D~~~tL~~ygI~~g 76 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP---------AEEAQIVYMEQLLTDDHCSLGSYGLKDG 76 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC---------GGGBCEEETTEEECCSSSBHHHHTCCTT
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC---------hHHeEEEECCEECCCCcccHHHCCCCCC
Confidence 4477778776553 45579999999999999999998 55 9999999999999888 79999999998
Q ss_pred CCCCceEEEEEEecCCCC
Q 034110 79 EVPGGVIIMHVVVQPSLA 96 (103)
Q Consensus 79 ~~~~~~~t~hlv~~~~~~ 96 (103)
.++||+.+..++
T Consensus 77 ------~~l~l~~~~~gg 88 (102)
T 1v5o_A 77 ------DMVVLLQKDNVG 88 (102)
T ss_dssp ------EEEEECBCCCCC
T ss_pred ------CEEEEEECCCCC
Confidence 789999886654
No 58
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.70 E-value=1.2e-18 Score=121.78 Aligned_cols=77 Identities=25% Similarity=0.352 Sum_probs=0.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
+|.++..+|.. ..+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+|.+| .
T Consensus 2 qI~VK~l~G~~-~~l~V~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~dygI~~g------s 65 (152)
T 3u5c_f 2 QIFVKTLTGKT-ITLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCE-EEEEECCCCCHHHHHHHHHHHhCCC---------HHHEEEEECCEEccccCcHHHcCCCCC------C
Confidence 56777788855 478999999999999999988 55 999999999999999999999999988 7
Q ss_pred EEEEEecCCCCCCcC
Q 034110 86 IMHVVVQPSLAKTKT 100 (103)
Q Consensus 86 t~hlv~~~~~~~k~~ 100 (103)
+|||++++.+++||+
T Consensus 66 tL~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 66 TLHLVLRLRGGGKKR 80 (152)
T ss_dssp ---------------
T ss_pred EEEEEeeccCCCcCc
Confidence 899999999887764
No 59
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=2.7e-17 Score=107.44 Aligned_cols=73 Identities=29% Similarity=0.365 Sum_probs=62.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
..+.|+++. +|.. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 27 m~i~I~Vk~-~g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~~gI~~g---- 91 (101)
T 3m63_B 27 MSLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINKANGIP---------VANQRLIYSGKILKDDQTVESYHIQDG---- 91 (101)
T ss_dssp --CCEEEEC-SSCC-CCBCCCTTSBHHHHHHHHHHHHSCC---------STTCCEEETTEECCTTSBTTTTTCCTT----
T ss_pred cEEEEEEEE-CCEE-EEEEeCCCCCHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCcCcHHHCCCCCC----
Confidence 357777776 6644 478999999999999999998 55 999999999999999999999999998
Q ss_pred ceEEEEEEecCC
Q 034110 83 GVIIMHVVVQPS 94 (103)
Q Consensus 83 ~~~t~hlv~~~~ 94 (103)
.++||+.+.+
T Consensus 92 --~tI~lv~~~P 101 (101)
T 3m63_B 92 --HSVHLVKSQP 101 (101)
T ss_dssp --EEEEECCCC-
T ss_pred --CEEEEEeCCC
Confidence 7899987653
No 60
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=1.9e-16 Score=104.02 Aligned_cols=81 Identities=25% Similarity=0.315 Sum_probs=66.6
Q ss_pred ceEEEEEEeCCC---CeeeeEEe--------CC-cchHHHHHHHHHhhCCCCCccCCCCCcc-eEEEecCeecCCCCccc
Q 034110 5 ELIDIKFRLYDG---SDIGPFRY--------SS-ASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISSGKILENNKTVG 71 (103)
Q Consensus 5 ~~v~l~~~~~~g---~~~~~~~v--------~~-~~tV~~lK~~i~~~~p~~~e~~p~~~~~-qrLI~~Gk~L~D~~tL~ 71 (103)
..+.|.++..+| .. +.++| ++ ++||.+||++|++..| +.+| +++ |||||+||.|+|+.+|+
T Consensus 11 ~~~~i~Vk~~~~~~~~~-~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~---~gip--~~~~qrLi~~Gk~L~D~~tL~ 84 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPK-SILQLPETELGEYSLGGYSISFLKQLIAGKLQ---ESVP--DPELIDLIYCGRKLKDDQTLD 84 (107)
T ss_dssp CSCCEEEEETTCTTSCC-EEECCCCCSSCSSCCCCCBHHHHHHHHHHHCT---TTCC--CSSSEEEEETTEECCTTCBHH
T ss_pred CceEEEEEeCCCCCccE-EEEEecCccccccCcccCCHHHHHHHHHHHhc---cCCC--hhhcEEEEECCeECCCCCcHH
Confidence 457888888888 44 35774 44 4999999999999854 2455 889 99999999999999999
Q ss_pred ccCCCCCCCCCceEEEEEEecCCCCC
Q 034110 72 QCKIPYGEVPGGVIIMHVVVQPSLAK 97 (103)
Q Consensus 72 ~~~i~~g~~~~~~~t~hlv~~~~~~~ 97 (103)
+|+|.+| .+|||+++..+.+
T Consensus 85 ~y~i~~g------~~i~lv~~~~~~~ 104 (107)
T 1x1m_A 85 FYGIQPG------STVHVLRKSWSGP 104 (107)
T ss_dssp HHTCCTT------CEEEEEESSCCSS
T ss_pred HcCCCCC------CEEEEEeCCCCCC
Confidence 9999988 6899999877554
No 61
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.67 E-value=1.7e-16 Score=114.39 Aligned_cols=78 Identities=22% Similarity=0.316 Sum_probs=70.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
.++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+|.++
T Consensus 105 eMqI~VKtl~Gkt~-~l~V~~s~TV~~LK~kI~~~~gIp---------~~~QrLi~~Gk~L~D~~tL~dygI~~g----- 169 (189)
T 3q3f_A 105 GGQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 169 (189)
T ss_dssp CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCCEEETTEECCTTCBGGGGTCCTT-----
T ss_pred ceeeeeecCCCCEE-EEEeCCCCcHHHHHHHHHhccCCC---------HHHEEEEECCEECCCCCCHHHCCCCCC-----
Confidence 47888899999654 79999999999999999988 65 999999999999999999999999998
Q ss_pred eEEEEEEecCCCCCCc
Q 034110 84 VIIMHVVVQPSLAKTK 99 (103)
Q Consensus 84 ~~t~hlv~~~~~~~k~ 99 (103)
.++||+++..++.+-
T Consensus 170 -stI~LvlrlrGG~~~ 184 (189)
T 3q3f_A 170 -STLHLVLRLRGGGQT 184 (189)
T ss_dssp -CEEEECCCCCCCCCC
T ss_pred -CEEEEEEEcCCCCcc
Confidence 689999999887654
No 62
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.49 E-value=3.9e-18 Score=104.49 Aligned_cols=72 Identities=25% Similarity=0.426 Sum_probs=63.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
.|.++..+|+.+ .+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gi~---------~~~qrL~~~gk~L~d~~tL~~~~i~~g------~ 65 (76)
T 3b1l_X 2 IVFVRFNSSYGF-PVEVDSDTSILQLKEVVAKQQGVP---------ADQLRVIFAGKELPNHLTVQNCDLEQQ------S 65 (76)
Confidence 466777888554 68999999999999999988 55 999999999999999999999999988 6
Q ss_pred EEEEEecCCC
Q 034110 86 IMHVVVQPSL 95 (103)
Q Consensus 86 t~hlv~~~~~ 95 (103)
++|+++++.|
T Consensus 66 ~i~l~~rlrg 75 (76)
T 3b1l_X 66 IVHIVQRPRR 75 (76)
Confidence 8999998764
No 63
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=6.5e-16 Score=98.36 Aligned_cols=76 Identities=17% Similarity=0.156 Sum_probs=64.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCc-----chHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCC-CCcccccCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSA-----STVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILEN-NKTVGQCKI 75 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~-----~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D-~~tL~~~~i 75 (103)
+..+.|+++.. |.. +.++++++ +||.+||++|++. +| +++|||||.|+.|+| +.+|++|+|
T Consensus 5 ~~~~~v~Vk~~-~~~-~~i~v~~~~~~~~~TV~~LK~~i~~~~gip---------~~~qrL~~~Gk~L~D~~~~L~~~~i 73 (92)
T 1wxv_A 5 SSGLTVTVTHS-NEK-HDLHVTSQQGSSEPVVQDLAQVVEEVIGVP---------QSFQKLIFKGKSLKEMETPLSALGI 73 (92)
T ss_dssp CSSEEEEEECS-SSE-EEEEECCCSSSSSCBHHHHHHHHHHHTCCC---------TTTCEEEETTEEECCSSSBHHHHTC
T ss_pred CCeEEEEEEEC-CEE-EEEEECCCcCcccCcHHHHHHHHHHHHCcC---------HHHEEEEECCeecCCCcccHHHCCC
Confidence 45688888874 534 47899995 9999999999988 55 999999999999988 668999999
Q ss_pred CCCCCCCceEEEEEEecCCCC
Q 034110 76 PYGEVPGGVIIMHVVVQPSLA 96 (103)
Q Consensus 76 ~~g~~~~~~~t~hlv~~~~~~ 96 (103)
.+| .++||+.++..+
T Consensus 74 ~~g------~~i~l~~~~~~~ 88 (92)
T 1wxv_A 74 QDG------CRVMLIGKKNSG 88 (92)
T ss_dssp CSS------EEEEEESCCSCS
T ss_pred CCC------CEEEEEecCCCC
Confidence 988 789998876654
No 64
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.66 E-value=8.3e-16 Score=107.57 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=68.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
..++|.++..+|+. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 19 ~~m~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~~gip---------~~~QrL~~~g~~L~d~~tL~~~~i~~~---- 84 (172)
T 3u30_A 19 SHMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 84 (172)
T ss_dssp CCEEEEEEETTTEE-EEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTGGGTCCTT----
T ss_pred CcEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCccccccCCHhHcCCccc----
Confidence 56889999999955 479999999999999999998 66 999999999999999999999999988
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.++||+++..++
T Consensus 85 --~~l~l~~~~~gg 96 (172)
T 3u30_A 85 --STLHLVLRLRGG 96 (172)
T ss_dssp --CEEEEEECCCCC
T ss_pred --ceeeeeeccccc
Confidence 689999887654
No 65
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=6.4e-16 Score=100.03 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=63.5
Q ss_pred CceEEEEEEeCCCCeee-eEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIG-PFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~-~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (103)
++.++|+++. .| ..+ .+++++++||.+||++|++. +| +++|||||.||.|+|+ +|++|+|.+|
T Consensus 5 ~~~m~i~Vk~-~g-~~~~~l~v~~~~TV~~lK~~I~~~tgip---------~~~QkLi~~Gk~L~D~-tL~~~~I~~g-- 70 (96)
T 1wgg_A 5 SSGYSVTVKW-GK-EKFEGVELNTDEPPMVFKAQLFALTGVQ---------PARQKVMVKGGTLKDD-DWGNIKMKNG-- 70 (96)
T ss_dssp CCEEEEEEEE-TT-EEEEEEEEESSSCHHHHHHHHHHHTCCC---------TTTSCCEETTEECCSS-CCCSCCCCSS--
T ss_pred CcEEEEEEEE-CC-EEEEEEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEEECCcCCCCC-CHHHCCCCCC--
Confidence 5678888886 56 445 58999999999999999998 55 9999999999999999 9999999988
Q ss_pred CCceEEEEEEecCC
Q 034110 81 PGGVIIMHVVVQPS 94 (103)
Q Consensus 81 ~~~~~t~hlv~~~~ 94 (103)
.++||+..+.
T Consensus 71 ----~~i~l~~~~~ 80 (96)
T 1wgg_A 71 ----MTVLMMGSAD 80 (96)
T ss_dssp ----CEEECCCCCC
T ss_pred ----CEEEEEecch
Confidence 6799887754
No 66
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.65 E-value=8.6e-16 Score=97.16 Aligned_cols=64 Identities=25% Similarity=0.309 Sum_probs=56.9
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEe
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~ 91 (103)
.+|.. +.+++++++||.+||++|++. +| +++|||+|+||.|+|+.+|++|+|.+| .++||+.
T Consensus 19 ~~g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~l~l~~ 82 (85)
T 2kd0_A 19 FGGKS-IPLSVSPDCTVKDLKSQLQPITNVL---------PRGQKLIFKGKVLVETSTLKQSDVGSG------AKLMLMA 82 (85)
T ss_dssp ETTEE-EEEEECTTSBHHHHHHHHHHHHCCC---------TTTCEEEETTEECCTTCBTTTTTCCTT------EEEEEEC
T ss_pred ECCEE-EEEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCeECCCcCCHHHCCCCCC------CEEEEEE
Confidence 46644 578999999999999999988 66 999999999999999999999999988 7899876
Q ss_pred cC
Q 034110 92 QP 93 (103)
Q Consensus 92 ~~ 93 (103)
.+
T Consensus 83 s~ 84 (85)
T 2kd0_A 83 SQ 84 (85)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 67
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.65 E-value=1.3e-15 Score=103.20 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=66.1
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
.+.|.++..+|.. ..+++++++||.+||++|++. +| ++.|||+|.|+.|+|+.+|++|+|.+|
T Consensus 76 ~~~i~Vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gi~---------~~~qrL~~~g~~L~d~~tL~~~~i~~~----- 140 (152)
T 3b08_A 76 GMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 140 (152)
T ss_dssp CEEEEEEESSSCE-EEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred ccceeeeecCCCE-EEEEeCCCCcHHHHHHHHHHHhCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC-----
Confidence 3567777888855 478999999999999999998 66 999999999999999999999999988
Q ss_pred eEEEEEEecCCCC
Q 034110 84 VIIMHVVVQPSLA 96 (103)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (103)
.++||++++.|+
T Consensus 141 -~~i~l~~r~~GG 152 (152)
T 3b08_A 141 -STLHLVLRLRGG 152 (152)
T ss_dssp -CEEEEEECCCC-
T ss_pred -CEEEEEEecCCC
Confidence 689999998875
No 68
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.64 E-value=7e-16 Score=107.95 Aligned_cols=75 Identities=21% Similarity=0.326 Sum_probs=62.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
.+.|.++..+|+. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 96 g~~i~Vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~~gip---------~~~q~L~~~g~~L~D~~tL~~y~i~~g----- 160 (172)
T 3u30_A 96 GMQIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 160 (172)
T ss_dssp CEEEEEEESSCCE-EEEEECTTCBHHHHHHHHHHHHCCC---------GGGCCEEETTEECCTTSBSGGGTCCTT-----
T ss_pred cccceeecccCcc-eeEEecCCCCHHHHHHHHHHHhCCC---------ceeEEEEECCccCCCCCcHHHhCCCCC-----
Confidence 3556667778855 478999999999999999998 55 999999999999999999999999999
Q ss_pred eEEEEEEecCCCC
Q 034110 84 VIIMHVVVQPSLA 96 (103)
Q Consensus 84 ~~t~hlv~~~~~~ 96 (103)
.++||+++..++
T Consensus 161 -~tl~l~~rlrgG 172 (172)
T 3u30_A 161 -STLHLVLRLRGG 172 (172)
T ss_dssp -CEEEECC-----
T ss_pred -CEEEEEEecCCC
Confidence 789999997764
No 69
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.64 E-value=1.8e-15 Score=96.56 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=61.8
Q ss_pred eEEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEe-------cCeecCCCCcccccCCCC
Q 034110 6 LIDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-------SGKILENNKTVGQCKIPY 77 (103)
Q Consensus 6 ~v~l~~~~~-~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~-------~Gk~L~D~~tL~~~~i~~ 77 (103)
.|.|.+... .+.......|++++||.+||++|+.. +++| +++||||| .|++|+|+.+|++|+|.+
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-----~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~ 74 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-----FATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRD 74 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-----SCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCT
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-----HCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCC
Confidence 355666553 34355678999999999999999988 2333 99999996 699999999999999999
Q ss_pred CCCCCceEEEEEEecCC
Q 034110 78 GEVPGGVIIMHVVVQPS 94 (103)
Q Consensus 78 g~~~~~~~t~hlv~~~~ 94 (103)
| .++||+-..|
T Consensus 75 g------~~ihlvd~~P 85 (86)
T 4b6w_A 75 E------FVIHVVDLQP 85 (86)
T ss_dssp T------CEEEEEECCC
T ss_pred C------CEEEEEeCCC
Confidence 9 7899986644
No 70
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.63 E-value=1e-15 Score=97.60 Aligned_cols=74 Identities=22% Similarity=0.146 Sum_probs=63.7
Q ss_pred CceEEEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEE---ecCeecCCCCcccccCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPY 77 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~-~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI---~~Gk~L~D~~tL~~~~i~~ 77 (103)
++.++|+++. .| ..+.+ ++++++||.+||++|++. +| +++|||+ |.|++|+|+.+|++|+|.+
T Consensus 5 ~~~m~i~Vk~-~g-~~~~i~~v~~~~TV~~lK~~I~~~~gip---------~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~ 73 (90)
T 1v5t_A 5 SSGLPIIVKW-GG-QEYSVTTLSEDDTVLDLKQFLKTLTGVL---------PERQKLLGLKVKGKPAENDVKLGALKLKP 73 (90)
T ss_dssp CCSCCEEEEE-TT-EEEEECSCCSSSBHHHHHHHHHHHTCCC---------TTTCEEESCEETTEECCTTSBHHHHTCCT
T ss_pred CceEEEEEEE-CC-EEEEEEEeCCCCCHHHHHHHHHHHHCcC---------HHHeEEEeeccCCcCcCCCCCHHHcCCCC
Confidence 4557777776 56 44578 999999999999999998 55 9999999 9999999999999999998
Q ss_pred CCCCCceEEEEEEecCC
Q 034110 78 GEVPGGVIIMHVVVQPS 94 (103)
Q Consensus 78 g~~~~~~~t~hlv~~~~ 94 (103)
| .++||+..+.
T Consensus 74 g------~~l~l~~~~~ 84 (90)
T 1v5t_A 74 N------TKIMMMGTRE 84 (90)
T ss_dssp T------EEEEEECCCS
T ss_pred C------CEEEEEecCc
Confidence 8 7899987654
No 71
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.63 E-value=2.9e-15 Score=99.22 Aligned_cols=74 Identities=11% Similarity=0.057 Sum_probs=60.6
Q ss_pred EEEEEEeCCC-CeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCC-CCCCCCC
Q 034110 7 IDIKFRLYDG-SDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEVPG 82 (103)
Q Consensus 7 v~l~~~~~~g-~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i-~~g~~~~ 82 (103)
+.|.|.-..+ .....++++|++||.+||++|+++ +| +++|||||+|++|+|++||++|+| .+|
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip---------p~~QRli~ggkll~D~~TL~~ygI~~~G---- 91 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP---------PVLQQWVIGQRLARDQETLHSHGVRQNG---- 91 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEEECTTCBTGGGTCCSTT----
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC---------HHHEEEeccCeEccCcCcHHHcCCCCCC----
Confidence 4455555554 234578999999999999999988 76 999999999999999999999999 477
Q ss_pred ceEEEEEEecCCC
Q 034110 83 GVIIMHVVVQPSL 95 (103)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (103)
.++||++-...
T Consensus 92 --~t~hL~l~~~~ 102 (105)
T 4dbg_A 92 --DSAYLYLLSAR 102 (105)
T ss_dssp --CEEEEEECCC-
T ss_pred --CEEEEEEEecc
Confidence 68999886543
No 72
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.63 E-value=2.6e-17 Score=111.24 Aligned_cols=74 Identities=24% Similarity=0.348 Sum_probs=0.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
+|.++..+|.. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~I~Vk~~~G~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~~~I~~g------s 65 (128)
T 3u5e_m 2 QIFVKTLTGKT-ITLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCE-EEEEeCCCCCHHHHHHHHHHHhCcC---------hHHEEEEECCEECCCCCchhhhccCCC------C
Confidence 46677788855 478999999999999999988 55 999999999999999999999999998 7
Q ss_pred EEEEEecCCCCC
Q 034110 86 IMHVVVQPSLAK 97 (103)
Q Consensus 86 t~hlv~~~~~~~ 97 (103)
++||+++..++.
T Consensus 66 ti~l~~rl~GG~ 77 (128)
T 3u5e_m 66 TLHLVLRLRGGI 77 (128)
T ss_dssp -----------C
T ss_pred EEEEEEEcCCCC
Confidence 899999988774
No 73
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.63 E-value=2.1e-15 Score=103.96 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=64.4
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEE-e-cCeecCCCCcccccCCCCCCCCC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLI-S-SGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI-~-~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
++|.+++.+|+.+ .+++++++||.+||++|++. +| +++|||+ | +|+.|+|+.+|++|+|.+|
T Consensus 3 m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip---------~~~QrL~~~~~g~~L~d~~tL~~y~i~~~---- 68 (159)
T 3rt3_B 3 WDLTVKMLAGNEF-QVSLSSSMSVSELKAQITQKIGVH---------AFQQRLAVHPSGVALQDRVPLASQGLGPG---- 68 (159)
T ss_dssp CEEEEEETTSCEE-EEECCTTCCHHHHHHHHHHHHCCC---------GGGEEEEEETTCCBCCTTSCGGGGTCCTT----
T ss_pred eEEEEEECCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------HHHEEEEEcCCCCCCCCCCCHHHcCCCCC----
Confidence 5788888999654 78999999999999999998 66 9999999 9 8999999999999999998
Q ss_pred ceEEEEEEecC
Q 034110 83 GVIIMHVVVQP 93 (103)
Q Consensus 83 ~~~t~hlv~~~ 93 (103)
.++|++++.
T Consensus 69 --~~l~l~~~~ 77 (159)
T 3rt3_B 69 --STVLLVVDK 77 (159)
T ss_dssp --CEEEEEECC
T ss_pred --CEEEEEccC
Confidence 689999984
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=1.5e-15 Score=97.88 Aligned_cols=73 Identities=29% Similarity=0.308 Sum_probs=62.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
++.+.|+++. .| ..+.+++++++||.+||++|++. +| +++|||+|.|++|+ +.+|++|+|.++
T Consensus 15 ~~~~~i~Vk~-~g-~~~~i~v~~~~TV~~LK~~I~~~tgip---------~~~QrL~~~Gk~Ld-d~tL~~~~i~~g--- 79 (95)
T 1v86_A 15 KELVDLKIIW-NK-TKHDVKVPLDSTGSELKQKIHSITGLP---------PAMQKVMYKGLVPE-DKTLREIKVTSG--- 79 (95)
T ss_dssp CCCEEEEEEE-TT-EEEEEEECTTSBHHHHHHHHHHHHCSC---------STTCCCBSSSBCCS-SSBHHHHCCCTT---
T ss_pred CceEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEEECCeeCC-cCcHHHCCCCCC---
Confidence 3568888875 46 44579999999999999999998 66 99999999999994 559999999988
Q ss_pred CceEEEEEEecCC
Q 034110 82 GGVIIMHVVVQPS 94 (103)
Q Consensus 82 ~~~~t~hlv~~~~ 94 (103)
.+|||+..+.
T Consensus 80 ---~~i~lv~~~~ 89 (95)
T 1v86_A 80 ---AKIMVVGSTI 89 (95)
T ss_dssp ---EEEEECCSSC
T ss_pred ---CEEEEEeccc
Confidence 7899987754
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.60 E-value=5.8e-15 Score=99.98 Aligned_cols=73 Identities=22% Similarity=0.343 Sum_probs=64.9
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
.|+++..+|+. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~~gip---------~~~q~L~~~g~~L~d~~tL~~~~i~~~------~ 65 (152)
T 3b08_A 2 QIFVKTLTGKT-ITLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (152)
T ss_dssp EEEEEETTSCE-EEEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred EEEEEeCCCCE-EEEEECCCCCHHHHHHHHHHHHCcC---------hHHeEEEECCeECcCcccHHHhccCCC------C
Confidence 57788888855 478999999999999999998 66 999999999999999999999999988 6
Q ss_pred EEEEEecCCCC
Q 034110 86 IMHVVVQPSLA 96 (103)
Q Consensus 86 t~hlv~~~~~~ 96 (103)
++|++.+..++
T Consensus 66 ~l~l~~~~~~~ 76 (152)
T 3b08_A 66 TLHLVLRLRGG 76 (152)
T ss_dssp EEEEEECCTTC
T ss_pred eeEEEeecccc
Confidence 89999887653
No 76
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.57 E-value=1.8e-14 Score=93.44 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=61.1
Q ss_pred CceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEec--Ce---ec-CCCCcccccC
Q 034110 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISS--GK---IL-ENNKTVGQCK 74 (103)
Q Consensus 4 ~~~v~l~~~~~~g~-~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~--Gk---~L-~D~~tL~~~~ 74 (103)
+..|.|.++...+. ....+++++++||++||++|++. +| +++|||+|. |+ .| +|+.+|++|+
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP---------~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~ 83 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGC---------AGTMKVQVFKGDTCVSTMDNNDAQLGYYA 83 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSC---------TTTEEEEEEETTEEEEECCCTTSBHHHHC
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcC---------HHHeEEEEecCCcccceeCCCCCCHhHCC
Confidence 46788888876653 24578999999999999999998 55 999999998 45 44 9999999999
Q ss_pred CCCCCCCCceEEEEEE
Q 034110 75 IPYGEVPGGVIIMHVV 90 (103)
Q Consensus 75 i~~g~~~~~~~t~hlv 90 (103)
|.+| .++||+
T Consensus 84 i~~g------stihlv 93 (95)
T 2kjr_A 84 NSDG------LRLHVV 93 (95)
T ss_dssp CSSS------CEEEEE
T ss_pred cCCC------CEEEEE
Confidence 9999 789986
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.5e-15 Score=93.36 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=59.7
Q ss_pred eEEEEEEeCCCCee-eeE-EeCCcchHHHHHHHHHhh---CCCCCccCCCCCcceEEEec--CeecCCCCcccccCCCCC
Q 034110 6 LIDIKFRLYDGSDI-GPF-RYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISS--GKILENNKTVGQCKIPYG 78 (103)
Q Consensus 6 ~v~l~~~~~~g~~~-~~~-~v~~~~tV~~lK~~i~~~---~p~~~e~~p~~~~~qrLI~~--Gk~L~D~~tL~~~~i~~g 78 (103)
.+.|.++...|+.+ +.+ ++++++||.+||++|++. || +++|||+|. ||+|+|+.||++|+|.+|
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~---------~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~ 80 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY---------PARQSLRLDPKGKSLKDEDVLQKLPVGTT 80 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC---------TTTCCEESSTTSCCCCTTCBTTTSSCCSE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC---------hHHeEEEecCCCcCcCCCCCHHHcCCCCC
Confidence 37788888887664 357 999999999999999984 66 999999977 999999999999999988
Q ss_pred CCCCceEEEEE
Q 034110 79 EVPGGVIIMHV 89 (103)
Q Consensus 79 ~~~~~~~t~hl 89 (103)
.++|+
T Consensus 81 ------stl~~ 85 (88)
T 2dzj_A 81 ------ATLYF 85 (88)
T ss_dssp ------EEEEE
T ss_pred ------CEEEE
Confidence 67775
No 78
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.55 E-value=1.1e-14 Score=113.75 Aligned_cols=83 Identities=22% Similarity=0.360 Sum_probs=68.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
..+.|.|+..+|+. +.++|++++||.+||++|++.+. .+.+| +++|||||+||+|+|+.+|++|+|.+|+
T Consensus 6 ~~M~I~VKtl~Gk~-~~leV~~~~TV~~LK~~I~~~~~--~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs----- 75 (368)
T 1oqy_A 6 SAVTITLKTLQQQT-FKIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN----- 75 (368)
T ss_dssp CCCCEEEEETTTEE-EEECCCTTCBHHHHHHHHHHHTC--SSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS-----
T ss_pred ceEEEEEEeCCCCE-EEEEeCCCChHHHHHHHHHHHhC--cCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC-----
Confidence 45788999999955 47999999999999999999531 13344 9999999999999999999999999884
Q ss_pred EEEEEEecCCCCC
Q 034110 85 IIMHVVVQPSLAK 97 (103)
Q Consensus 85 ~t~hlv~~~~~~~ 97 (103)
..+||+.++.++.
T Consensus 76 tIv~lv~k~~~~~ 88 (368)
T 1oqy_A 76 FVVVMVTKTKAGQ 88 (368)
T ss_dssp CEEEEEECCCSSS
T ss_pred EEEEEEecCCCCC
Confidence 3458888876543
No 79
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.54 E-value=6.1e-16 Score=111.67 Aligned_cols=73 Identities=18% Similarity=0.247 Sum_probs=1.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~ 87 (103)
+|.+++.+|.. ..++|++++||.+||++|++. +++| +++|||||+|++|+|+.||+ ++ +||
T Consensus 2 qI~VKtL~Gkt-itLeV~~sdTV~~LK~kI~~k-----eGIP--~~qQRLIf~GK~LeD~~TLs-----~~------STL 62 (189)
T 2xzm_9 2 QVQVKTLEGET-KIYTLEQGTSVLDLKSQISQD-----MGFE--IDMMTLVNNGFIAPNTELVT-----DD------VTY 62 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCCE-EEEEECCcChHHHHHHHHHHH-----hCcC--hhHEEEEecCeECCCCCccc-----CC------CEE
Confidence 56777888854 479999999999999999988 2233 99999999999999999998 45 689
Q ss_pred EEEecCCCCCCc
Q 034110 88 HVVVQPSLAKTK 99 (103)
Q Consensus 88 hlv~~~~~~~k~ 99 (103)
||++++.++.++
T Consensus 63 hLvlRLrGG~~k 74 (189)
T 2xzm_9 63 YLSLKLLGGKKK 74 (189)
T ss_dssp ---------CCC
T ss_pred EEEEecCCCccc
Confidence 999999987664
No 80
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.53 E-value=3.9e-14 Score=92.24 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=61.8
Q ss_pred CceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCe---e----cCCCCccccc
Q 034110 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK---I----LENNKTVGQC 73 (103)
Q Consensus 4 ~~~v~l~~~~~~g~-~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk---~----L~D~~tL~~~ 73 (103)
++.|.|.+...... ....++|++++||++||++|+.. +| +++|||||.|+ . ++|+++|++|
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip---------~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y 82 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTS---------VNSMALELYDDSGSKVAVLSDDSRPLGFF 82 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCC---------TTSEEEEEECSSSCBCCCSSGGGSCHHHH
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcC---------HHHeEEEEecCCCcccceecCCcCCHHHC
Confidence 56788888875442 23578999999999999999998 65 99999999984 3 5999999999
Q ss_pred CCCCCCCCCceEEEEEEec
Q 034110 74 KIPYGEVPGGVIIMHVVVQ 92 (103)
Q Consensus 74 ~i~~g~~~~~~~t~hlv~~ 92 (103)
+|.+| .++||+-.
T Consensus 83 ~I~~g------~~Ihlvd~ 95 (97)
T 2kj6_A 83 SPFDG------FRLHIIDL 95 (97)
T ss_dssp CCCSC------CEEEEEEC
T ss_pred CCCCC------CEEEEEeC
Confidence 99999 78998753
No 81
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.53 E-value=3.2e-14 Score=109.06 Aligned_cols=73 Identities=23% Similarity=0.399 Sum_probs=64.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
..++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+||.|+|+.+|++|+|.++
T Consensus 232 ~~MqI~VKtl~Gk~~-~leV~~s~TV~dLK~kI~~~~GIp---------~~~QRLi~~Gk~L~D~~TLsdygI~~g---- 297 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 297 (307)
T ss_dssp CCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTGGGTCCTT----
T ss_pred CeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEeCCeecCCCCCHHHcCCCCC----
Confidence 457888998889654 78999999999999999998 66 999999999999999999999999988
Q ss_pred ceEEEEEEecC
Q 034110 83 GVIIMHVVVQP 93 (103)
Q Consensus 83 ~~~t~hlv~~~ 93 (103)
.++||+++.
T Consensus 298 --stL~LvlRL 306 (307)
T 3ai5_A 298 --STLHLVLRL 306 (307)
T ss_dssp --CEEEEEC--
T ss_pred --CEEEEEEeC
Confidence 689999875
No 82
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.51 E-value=7.9e-14 Score=89.59 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=62.2
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecC---ee----cCCCCcccccCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIP 76 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~G---k~----L~D~~tL~~~~i~ 76 (103)
+..|.|.++.........+++++++||.+||++|++. +++| +++|||+|.| +. |+|+.+|++|+|.
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-----~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~ 77 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-----VGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVD 77 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-----TCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCC
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-----HCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCC
Confidence 4568888877655313578999999999999999998 2233 9999999987 43 5899999999999
Q ss_pred CCCCCCceEEEEEEecCC
Q 034110 77 YGEVPGGVIIMHVVVQPS 94 (103)
Q Consensus 77 ~g~~~~~~~t~hlv~~~~ 94 (103)
+| .++||+-..+
T Consensus 78 ~g------~~l~v~d~~P 89 (95)
T 1v6e_A 78 DG------CRIHVIDHSG 89 (95)
T ss_dssp TT------CEEEEBCCSC
T ss_pred CC------CEEEEEECCc
Confidence 98 6899875433
No 83
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=8.5e-14 Score=91.23 Aligned_cols=71 Identities=17% Similarity=0.314 Sum_probs=59.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEe--cCeecCCCCcccccCCCCCCCCC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS--SGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~--~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.+++++ .|+.+ .+++++++||++||++|++. +| +++|||+| .|+ |+|+.+|++|+|..|
T Consensus 10 ~~~~vk~-~Gk~~-~v~v~~~~TV~~LK~~I~~~tgIp---------p~~QkLi~~~~gk-L~D~~tLs~~~I~~g---- 73 (100)
T 2dzm_A 10 LDFRVEY-RDRNV-DVVLEDTCTVGEIKQILENELQIP---------VSKMLLKGWKTGD-VEDSTVLKSLHLPKN---- 73 (100)
T ss_dssp EEEEEEC-SSCEE-EEEEETTSBHHHHHHHHHHHHCCC---------TTTCCEECCSSSC-CCTTSBHHHHCCCSE----
T ss_pred EEEEEEe-CCeEE-EEEECCCCcHHHHHHHHHHHHCCC---------hhHeEEEccCCCC-CCCcCCHHHcCCCCC----
Confidence 3344444 56454 79999999999999999998 66 99999997 677 999999999999988
Q ss_pred ceEEEEEEecCCC
Q 034110 83 GVIIMHVVVQPSL 95 (103)
Q Consensus 83 ~~~t~hlv~~~~~ 95 (103)
.+|||++....
T Consensus 74 --stL~lvl~~~~ 84 (100)
T 2dzm_A 74 --NSLYVLTPDLP 84 (100)
T ss_dssp --EEEEECCSSSC
T ss_pred --CEEEEEecCCC
Confidence 79999988664
No 84
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.46 E-value=7e-13 Score=88.95 Aligned_cols=74 Identities=12% Similarity=0.162 Sum_probs=60.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecC---ee----cCCCCcccccCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIP 76 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~G---k~----L~D~~tL~~~~i~ 76 (103)
.|.|.|....+.....+++++++||.+||++|+.. +| +++|||+|.| +. ++|+.+|++|+|.
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip---------~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~ 76 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTT---------VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR 76 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCC---------TTTEEEEEECSSSSEEEECCCCSSBTTTTTCC
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCC---------HHHeEEEEecCCCccccccCCCcCCHHHCCCC
Confidence 57777776555213578999999999999999998 66 9999999988 43 4899999999999
Q ss_pred CCCCCCceEEEEEEecCC
Q 034110 77 YGEVPGGVIIMHVVVQPS 94 (103)
Q Consensus 77 ~g~~~~~~~t~hlv~~~~ 94 (103)
+| .++||+...+
T Consensus 77 ~g------~~ihvvd~~p 88 (122)
T 1t0y_A 77 DG------YRIHAVDVTG 88 (122)
T ss_dssp SS------EEEEEEECTT
T ss_pred CC------CEEEEEeCCC
Confidence 98 8999987544
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.45 E-value=2.1e-13 Score=89.53 Aligned_cols=76 Identities=16% Similarity=0.222 Sum_probs=63.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCe-----------e----cCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-----------I----LENN 67 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~-~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk-----------~----L~D~ 67 (103)
.+...|+||..+|.. .++++ +++||.+||++|++... +| +++|||+|.|+ . ++|+
T Consensus 5 ~~~M~irvrs~~G~~--~v~v~~~~~Tv~~LK~kI~~~~g-----ip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~ 75 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLE--RVSVDGPHITVSQLKTLIQDQLQ-----IP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPN 75 (107)
T ss_dssp CCCEEEEEECSSCEE--EEEECCTTSBHHHHHHHHHHHSC-----CC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTT
T ss_pred CCeEEEEEECCCCCE--EEEECCCCCcHHHHHHHHHHHhC-----cC--cccCEEEECCccccccCccccccccccCCCC
Confidence 455789999999943 47999 99999999999999822 22 99999999998 4 6899
Q ss_pred CcccccCCCCCCCCCceEEEEEEecCC
Q 034110 68 KTVGQCKIPYGEVPGGVIIMHVVVQPS 94 (103)
Q Consensus 68 ~tL~~~~i~~g~~~~~~~t~hlv~~~~ 94 (103)
.+|++|+|.+| .++||+....
T Consensus 76 ~tL~~~gi~~G------~~L~l~~~~~ 96 (107)
T 1wf9_A 76 LRISSLNLAHG------SMVYLAYEGE 96 (107)
T ss_dssp CBGGGTCCCTT------CEEECCCSSC
T ss_pred CCHHHCCCCCC------CEEEEEeCCC
Confidence 99999999999 6799887644
No 86
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.43 E-value=8.1e-13 Score=85.41 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=69.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
.+.++|+++..+|+.+ .+.|.+++++..|++.++++ +| ++++||+|.|+.|.+++|+++|++.+|
T Consensus 5 ~~~i~ikVk~~~g~~i-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg--- 71 (94)
T 2io1_B 5 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE--- 71 (94)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEECCCCHHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC---
Confidence 4679999999999766 68999999999999999988 55 899999999999999999999999999
Q ss_pred CceEEEEEEecCCCCC
Q 034110 82 GGVIIMHVVVQPSLAK 97 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~~ 97 (103)
.+||++++..++.
T Consensus 72 ---D~Idv~~~~~GG~ 84 (94)
T 2io1_B 72 ---DTIDVFQQQTGGV 84 (94)
T ss_dssp ---CEEEEEECCEESC
T ss_pred ---CEEEEEEeccCCC
Confidence 4799999887763
No 87
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.40 E-value=5.5e-13 Score=102.40 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=62.1
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEE---ecCeecCCCCcccccCCCC
Q 034110 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPY 77 (103)
Q Consensus 3 ~~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI---~~Gk~L~D~~tL~~~~i~~ 77 (103)
+++.+.|+++. +|+. +.+++++++||++||++|++. +| +++|||| |+|++|+|+.+|++|+|..
T Consensus 2 ~~~~i~i~Vk~-~g~~-~~v~v~~~~Tv~~lK~~I~~~tgVp---------p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~ 70 (320)
T 3shq_A 2 EVKEVVVIVKW-SGKE-YPVDLTDQDTVEVLRHEIFRKTQVR---------PERQKLLNLKYKGKTAADNVKISALELKP 70 (320)
T ss_dssp --CEEEEEEEE-TTEE-EEEEEETTSBHHHHHHHHHHHHCCC---------GGGCEETTCBSSSSBCCTTSBTTSSCCC-
T ss_pred CCceEEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEeecccCCcccCccccHHHcCCCC
Confidence 45678888886 5644 579999999999999999988 66 9999999 8999999999999999999
Q ss_pred CCCCCceEEEEEEecCC
Q 034110 78 GEVPGGVIIMHVVVQPS 94 (103)
Q Consensus 78 g~~~~~~~t~hlv~~~~ 94 (103)
| .++||+-.+.
T Consensus 71 g------~~l~L~gs~~ 81 (320)
T 3shq_A 71 N------FKLMMVGSTE 81 (320)
T ss_dssp -------CEEEEECCCC
T ss_pred C------CEEEEEccch
Confidence 8 6899876654
No 88
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.37 E-value=6.2e-12 Score=80.90 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=69.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
.+.+.|+++..+|+.+ .+.+.+++++..|++..++. +| ++++||+|.|+.|.+++|+++|++.+|
T Consensus 3 ~~~i~ikVk~~~g~~v-~~~vk~~t~l~kl~~~y~~~~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg--- 69 (91)
T 2io0_B 3 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE--- 69 (91)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHTTCC---------STTEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC---
Confidence 3578999999999766 69999999999999999988 54 899999999999999999999999999
Q ss_pred CceEEEEEEecCCCCC
Q 034110 82 GGVIIMHVVVQPSLAK 97 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~~ 97 (103)
.+||++++..++.
T Consensus 70 ---D~Idv~~~q~gg~ 82 (91)
T 2io0_B 70 ---DTIDVFQQQTGGV 82 (91)
T ss_dssp ---EEEEEEECCCCCC
T ss_pred ---CEEEEEEeccCCc
Confidence 6799999887764
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.34 E-value=1.2e-11 Score=79.58 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=66.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.+.|+++..+|+.+ .+.+.+++++..|++.+++. +| ++++||+|.|+.|.++.|+++|++.+|
T Consensus 16 ~~i~ikV~~~~g~~i-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~dl~medg---- 81 (93)
T 2d07_B 16 DHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE---- 81 (93)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT----
T ss_pred CeEEEEEECCCCCEE-EEEEccCCHHHHHHHHHHHHhCCC---------ccceEEEECCEEcCCCCCHHHcCCCCC----
Confidence 578888888889766 68999999999999999988 55 899999999999999999999999999
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.+||++++..|+
T Consensus 82 --D~Idv~~~q~GG 93 (93)
T 2d07_B 82 --DTIDVFQQQTGG 93 (93)
T ss_dssp --EEEEEEECC---
T ss_pred --CEEEEEeeccCC
Confidence 679999887654
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.31 E-value=2.6e-12 Score=80.97 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=58.0
Q ss_pred EEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecC--eecC---CCCcccccCCCCCCCC
Q 034110 8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE---NNKTVGQCKIPYGEVP 81 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~-v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~G--k~L~---D~~tL~~~~i~~g~~~ 81 (103)
.|++|+.+|..+ +. +++++||.+||+.|++.. ++| ++.|||+|++ |.|+ |+.+|++|+|..|
T Consensus 2 ~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~~-----gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g--- 69 (86)
T 2kzr_A 2 RVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAIT-----GIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSG--- 69 (86)
T ss_dssp CEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHHT-----CCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTT---
T ss_pred EEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHHh-----CCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCC---
Confidence 588999999543 66 999999999999999982 222 8999999974 8874 7899999999988
Q ss_pred CceEEEEEEecC
Q 034110 82 GGVIIMHVVVQP 93 (103)
Q Consensus 82 ~~~~t~hlv~~~ 93 (103)
.++|+.-..
T Consensus 70 ---~~l~v~~~~ 78 (86)
T 2kzr_A 70 ---DMLIVEEDQ 78 (86)
T ss_dssp ---CEEECCCCS
T ss_pred ---CEEEEEeCC
Confidence 578876554
No 91
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=1.4e-11 Score=81.11 Aligned_cols=77 Identities=17% Similarity=0.242 Sum_probs=69.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.+.|+++..+|+.+ .+.|.+++++..|++.++++ +| ++++||+|.|+.|.+++|+++|++.+|
T Consensus 23 ~~I~IkVk~~~g~~i-~~kVk~~t~l~kL~~~y~ek~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg---- 88 (104)
T 1wz0_A 23 DHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE---- 88 (104)
T ss_dssp CCEEEEEECSSSCEE-EEEECTTSCHHHHHHHHHHHHTCC---------TTTSCEESSSSBCCTTSCTTTTTCCTT----
T ss_pred CeEEEEEECCCCCEE-EEEEcCCChHHHHHHHHHHHhCCC---------cceEEEEECCEEcCCCCCHHHcCCCCC----
Confidence 578899998899766 69999999999999999988 65 889999999999999999999999999
Q ss_pred ceEEEEEEecCCCCC
Q 034110 83 GVIIMHVVVQPSLAK 97 (103)
Q Consensus 83 ~~~t~hlv~~~~~~~ 97 (103)
.+||++++..++.
T Consensus 89 --D~Idv~~~q~GG~ 101 (104)
T 1wz0_A 89 --DTIDVFQQQTSGP 101 (104)
T ss_dssp --EEEEECCCCCCCS
T ss_pred --CEEEEEEeccCCC
Confidence 6799999887764
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.26 E-value=4.4e-11 Score=73.30 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=61.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
++|+++..+|+.+ .+.+.+++++..|++..++. +| ++++||+|.|+.|.+++|++++++.+|
T Consensus 2 i~lkV~~~~g~~v-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~~l~medg------ 65 (72)
T 1wm3_A 2 INLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE------ 65 (72)
T ss_dssp EEEEEECTTSCEE-EEEECTTSCTHHHHHHHHHHHTCC---------TTTCEEEETTEECCTTCCTTTTTCCTT------
T ss_pred EEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cceEEEEECCEEcCCCCCHHHcCCCCC------
Confidence 6788888899766 69999999999999999988 55 899999999999999999999999999
Q ss_pred EEEEEE
Q 034110 85 IIMHVV 90 (103)
Q Consensus 85 ~t~hlv 90 (103)
.++|+.
T Consensus 66 D~Idv~ 71 (72)
T 1wm3_A 66 DTIDVF 71 (72)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 578875
No 93
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.25 E-value=2.6e-11 Score=80.61 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=68.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.+.|+++..+|+.+ .+.|.+++++..|++..++. +| ++++||+|.|+.|.+++|+++|++.+|
T Consensus 25 ~~I~IkVk~~~g~~i-~fkVk~~t~l~kL~~ay~ek~gi~---------~~~~rfiFdG~~L~~~~Tp~dl~mEDg---- 90 (110)
T 2k8h_A 25 ALVAVKVVNADGAEM-FFRIKSRTALKKLIDTYCKKQGIS---------RNSVRFLFDGTPIDETKTPEELGMEDD---- 90 (110)
T ss_dssp CCEEEEEEETTSCCE-EEEECTTSSHHHHHHHHHHHHTCC---------SSSCEEESSSCBCCSSSHHHHHHCSSE----
T ss_pred CeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC----
Confidence 569999999999766 69999999999999999988 65 889999999999999999999999999
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.+||+++...++
T Consensus 91 --D~Idv~~~q~Gg 102 (110)
T 2k8h_A 91 --DVIDAMVEQTGG 102 (110)
T ss_dssp --EEEEEECCCCCC
T ss_pred --CEEEEEEcccCc
Confidence 679998887765
No 94
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.24 E-value=7.6e-11 Score=77.93 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=65.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.++|+++. +|+.+ .+.+.+++++..|++..+++ ++ ++++||+|.|+.|.+++|++++++.+|
T Consensus 30 ~~I~IkV~~-~g~~i-~fkIk~tt~l~kL~~ay~ek~gi~---------~~~~rF~FdG~rl~~~~Tp~dl~medg---- 94 (106)
T 2eke_C 30 THINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN---- 94 (106)
T ss_dssp SEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT----
T ss_pred CeEEEEEec-CCcEE-EEEeCCCCHHHHHHHHHHHHhCCC---------cccEEEEECCeEcCCCCCHHHcCCCCC----
Confidence 568999988 89665 68999999999999999988 55 899999999999999999999999999
Q ss_pred ceEEEEEEecCCCC
Q 034110 83 GVIIMHVVVQPSLA 96 (103)
Q Consensus 83 ~~~t~hlv~~~~~~ 96 (103)
.+||++++..|+
T Consensus 95 --D~Idv~~~q~GG 106 (106)
T 2eke_C 95 --DIIEAHREQIGG 106 (106)
T ss_dssp --EEEEEEECC---
T ss_pred --CEEEEEeecccC
Confidence 579998887654
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.21 E-value=1e-10 Score=73.04 Aligned_cols=71 Identities=10% Similarity=0.175 Sum_probs=63.2
Q ss_pred CceEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCC
Q 034110 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (103)
Q Consensus 4 ~~~v~l~~~~~~g~-~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (103)
.+.+.|+++..+|+ .+ .+.+.+++++..|++..+++ +| ++++||+|.|+.|.+++|++++++.+||
T Consensus 5 ~~~i~ikV~~~~g~~~i-~~~i~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~~l~medgD- 73 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQML-EISLSPDSPLKVLMSHYEEAMGLS---------GHKLSFFFDGTKLSGKELPADLGLESGD- 73 (79)
T ss_dssp CCCEEEEEECSSTTCEE-EEEECTTSCHHHHHHHHHHHHTCT---------TCCCEEEETTEECCSCCCHHHHTCCTTC-
T ss_pred CCEEEEEEEeCCCCEEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCCC-
Confidence 56799999999996 55 68999999999999999988 55 8899999999999999999999999994
Q ss_pred CCceEEEEEE
Q 034110 81 PGGVIIMHVV 90 (103)
Q Consensus 81 ~~~~~t~hlv 90 (103)
+||+.
T Consensus 74 -----~Idv~ 78 (79)
T 3a4r_A 74 -----LIEVW 78 (79)
T ss_dssp -----EEEEE
T ss_pred -----EEEEe
Confidence 67763
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.11 E-value=6.9e-10 Score=71.16 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=60.0
Q ss_pred ceEEEEEEeC---CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecC------ee-c-CCCCccccc
Q 034110 5 ELIDIKFRLY---DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG------KI-L-ENNKTVGQC 73 (103)
Q Consensus 5 ~~v~l~~~~~---~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~G------k~-L-~D~~tL~~~ 73 (103)
.-|.|+|+.. +| ......+++++||.+||++|+..+ .+| ++.|||.|.+ .. | +|..+|..|
T Consensus 8 ~~v~l~I~~~~~~~~-~~~e~~l~~~~TV~~LK~~i~~~~-----gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y 79 (97)
T 1wjn_A 8 QLLTLKIKCSNQPER-QILEKQLPDSMTVQKVKGLLSRLL-----KVP--VSELLLSYESSKMPGREIELENDLQPLQFY 79 (97)
T ss_dssp CEEEEEEEESSCSSS-CCEEEEEETTSBHHHHHHHHHTTT-----TCC--TTTCEEEEECTTSCSCEEECCCSSSBSGGG
T ss_pred ccEEEEEEecCCCCC-cEEEEECCCCCCHHHHHHHHHHHH-----CCC--hhHeEEEEEcCCCCceeeccCCCcccHhhc
Confidence 4577888763 45 556789999999999999999992 122 9999999883 22 4 788999999
Q ss_pred CCCCCCCCCceEEEEEEecCC
Q 034110 74 KIPYGEVPGGVIIMHVVVQPS 94 (103)
Q Consensus 74 ~i~~g~~~~~~~t~hlv~~~~ 94 (103)
++.+| .++|+....+
T Consensus 80 ~i~~G------~~I~V~d~~p 94 (97)
T 1wjn_A 80 SVENG------DCLLVRWSGP 94 (97)
T ss_dssp TCCTT------CEEEEECCSS
T ss_pred CCCCC------CEEEEEecCC
Confidence 99999 6799877543
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.86 E-value=2.2e-08 Score=67.00 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=64.8
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.|+|+++..+|..+ .+.|.+++++..|++...++ ++ ++++||+|.|+.|.++.|.+++++.+||
T Consensus 39 ~~I~LKV~~qdg~ev-~fkIk~tt~L~KLm~aY~er~Gl~---------~~~irFlFDG~rI~~~~TP~dL~MEDgD--- 105 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEED--- 105 (115)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------TTSEEEEETTEECCTTCCTTTTTCCTTC---
T ss_pred CeEEEEEEcCCCCEE-EEEEccCChHHHHHHHHHHHhCCC---------hhhEEEEECCeECCCCCCHHHcCCCCCC---
Confidence 568888888889776 58999999999999999988 55 9999999999999999999999999994
Q ss_pred ceEEEEEEecCC
Q 034110 83 GVIIMHVVVQPS 94 (103)
Q Consensus 83 ~~~t~hlv~~~~ 94 (103)
+|++.++..
T Consensus 106 ---~IdV~~~Q~ 114 (115)
T 3kyd_D 106 ---VIEVYQEQC 114 (115)
T ss_dssp ---EEEEEECCC
T ss_pred ---EEEEEeecc
Confidence 688776643
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.77 E-value=6.5e-08 Score=70.16 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=67.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.|+|+++. +|..+ .+.+.+++++..|++..+++ +| ++++||+|.|+.|.+++|.+++++.+|
T Consensus 28 ~~I~LkV~~-~g~~v-~fkIk~~t~l~kL~~ay~er~Gi~---------~~~~RF~FdG~rI~~~~TP~dL~MEdg---- 92 (200)
T 3pge_A 28 THINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN---- 92 (200)
T ss_dssp CCEEEEEEC-SSCEE-EEEECTTSCTHHHHHHHHHHHSSC---------GGGEEEEETTEECCTTCCTTTTTCCTT----
T ss_pred CeEEEEEec-CCCEE-EEEEecCCHHHHHHHHHHHHhCCC---------hhhEEEEECCEEcCCCCCHHHcCCCCC----
Confidence 458888874 77665 69999999999999999888 55 999999999999999999999999999
Q ss_pred ceEEEEEEecCCCCCCc
Q 034110 83 GVIIMHVVVQPSLAKTK 99 (103)
Q Consensus 83 ~~~t~hlv~~~~~~~k~ 99 (103)
.+||++++..++.+.
T Consensus 93 --D~Idv~~~q~gg~kd 107 (200)
T 3pge_A 93 --DIIEAHREQIGGGGE 107 (200)
T ss_dssp --EEEEEEECCSCCC-C
T ss_pred --CEEEEEeccCcCcCc
Confidence 579999998877643
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.60 E-value=1.9e-07 Score=67.77 Aligned_cols=77 Identities=12% Similarity=0.153 Sum_probs=67.4
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~ 82 (103)
+.|+|++. .+|..+ .+.|.+++++..|++...++ +| ++++||+|.|+.|.+++|.+++++.+|
T Consensus 56 e~InLKVk-~dG~eV-~FKIKrtTpL~KLmeAYcERqGL~---------~~sIRFLFDGqRI~~ddTPeDLdMEDG---- 120 (207)
T 3tix_A 56 THINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLTFLYDGIEIQADQTPEDLDMEDN---- 120 (207)
T ss_dssp CEEEEEEE-CSSCEE-EEEEETTSCTHHHHHHHHHHTTCC---------GGGSCEEETTEECCSSCCTTTTTCCTT----
T ss_pred CcEEEEEe-cCCCEE-EEEEccCChHHHHHHHHHHHhCCC---------cccEEEEECCeecCCCCCHHHcCCCCC----
Confidence 46888886 477665 69999999999999999888 54 899999999999999999999999999
Q ss_pred ceEEEEEEecCCCCCC
Q 034110 83 GVIIMHVVVQPSLAKT 98 (103)
Q Consensus 83 ~~~t~hlv~~~~~~~k 98 (103)
.+|+++++..++..
T Consensus 121 --DtIDV~leQ~GG~~ 134 (207)
T 3tix_A 121 --DIIEAHREQIGGLP 134 (207)
T ss_dssp --EEEEECCCCCTTGG
T ss_pred --CEEEEEEeccCCCc
Confidence 57999998887754
No 100
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.29 E-value=4.2e-06 Score=54.13 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=42.0
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeec--CCCCcccccC
Q 034110 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL--ENNKTVGQCK 74 (103)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L--~D~~tL~~~~ 74 (103)
|-+..+ ....+.+.++.||..+|++|+++ +++| +++|+|||.|+.| +.+..-..|-
T Consensus 18 f~~~~a-~~h~v~I~~~etv~~~ke~V~eq-----TgIp--~~~Q~LL~eg~~l~l~p~~~a~~~p 75 (94)
T 4efo_A 18 FSLQQM-TAHKIYIHSYNTATIFHELVYKQ-----TKII--SSNQELIYEGRRLVLEPGRLAQHFP 75 (94)
T ss_dssp EETTTT-EEEEEEEETTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEEECCCTTCBGGGSC
T ss_pred EEcccc-eEEEEEeccchHHHHHHHHHHHH-----hCCC--HHHHHHHhCCCccccCCCCccccCC
Confidence 444555 66679999999999999999999 2333 9999999999876 3444444443
No 101
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.16 E-value=2.7e-07 Score=67.74 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=1.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
.+.|+|++ ..+|..+ .+.|.+++.+..|++...++. +++ ++++||+|.|+.|.+++|.+++++.+||
T Consensus 19 ~e~InLKV-~qdGseV-~FKIKrtTpL~KLM~AYcERq-----GLs--~~siRFLFDGqRI~dddTPadL~MEDGD---- 85 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEI-FFKIKKTTPLRRLMEAFAKRQ-----GKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEE-EEEEccCChHHHHHHHHHHHh-----CCC--ccceEEEECCEecCCCCCHHHcCCCCCC----
Confidence 35677888 5577655 689999999999999888872 222 8999999999999999999999999994
Q ss_pred eEEEEEEecCCCCC
Q 034110 84 VIIMHVVVQPSLAK 97 (103)
Q Consensus 84 ~~t~hlv~~~~~~~ 97 (103)
+|+++.+..|+.
T Consensus 86 --tIDV~leQ~GG~ 97 (227)
T 3v7o_A 86 --IIEAHREQIGGL 97 (227)
T ss_dssp ------------CC
T ss_pred --EEEEEecccCCc
Confidence 689888877763
No 102
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.11 E-value=1.2e-06 Score=54.57 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=47.6
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCee-----cCCCCcccccCCCCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI-----LENNKTVGQCKIPYGE 79 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~-----L~D~~tL~~~~i~~g~ 79 (103)
...||||..+|.. -+++++++|+.+|+++|++..+ +| ++.+.|.++-.. +.++.+|+++||..||
T Consensus 4 ~m~lRvrs~~G~~--Ri~v~~~~t~~~L~~~I~~~~~-----i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd 73 (80)
T 2pjh_A 4 SIIIRVQSPDGVK--RITATKRETAATFLKKVAKEFG-----FQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGD 73 (80)
T ss_dssp CCCCEEECSSEEE--ECCCCSSCCHHHHHHHHHHHTC-----CC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTC
T ss_pred cEEEEEECCCCCE--EEEcCCcChHHHHHHHHHHHcC-----CC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCC
Confidence 3678999999943 3679999999999999999854 11 344444332222 3478899999999996
No 103
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.98 E-value=7.6e-05 Score=46.33 Aligned_cols=65 Identities=18% Similarity=0.293 Sum_probs=52.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCcceEEE--ecCeec---CCCCcccccCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPY 77 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~-~p~~~e~~p~~~~~qrLI--~~Gk~L---~D~~tL~~~~i~~ 77 (103)
+....|+||+.+|+.+ .-.|..++||.+|.+.|... .+ ....+|+ |-.|.| +.++||.++++..
T Consensus 5 ~~~~~i~iRlpdG~r~-~~~F~~~~tl~~v~~fv~~~~~~---------~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p 74 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFL-ERRFLASNKLQIVFDFVASKGFP---------WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP 74 (84)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHTTCC---------TTTEEEECSSSCCBGGGSCTTSBTTTTTCCS
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHcCCC---------CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC
Confidence 5678999999999665 56999999999999999886 22 5667787 346777 4578999999986
Q ss_pred C
Q 034110 78 G 78 (103)
Q Consensus 78 g 78 (103)
+
T Consensus 75 ~ 75 (84)
T 3qx1_A 75 Q 75 (84)
T ss_dssp E
T ss_pred C
Confidence 6
No 104
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.97 E-value=6e-05 Score=54.27 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=64.1
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~ 81 (103)
++.|.|+++- +|..+ .+.+..++....|++..+++ +| ++++||+|.|+.+.+++|..++.+.++
T Consensus 19 ~~~i~ikv~~-~~~~v-~~~i~~~~~l~kl~~~y~~~~g~~---------~~~~~f~fdG~~i~~~~Tpk~L~~ed~--- 84 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN--- 84 (209)
T ss_dssp CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGCEEEETTEECCTTCCTTTTTCCTT---
T ss_pred CCcEEEEEEc-CCCEE-EEEEeeCCHHHHHHHHHHHhhCCC---------hheEEEEECCEeccCCCChHHhhhccc---
Confidence 4678888875 66554 58999999999999999988 66 999999999999999999999999988
Q ss_pred CceEEEEEEecCCCC
Q 034110 82 GGVIIMHVVVQPSLA 96 (103)
Q Consensus 82 ~~~~t~hlv~~~~~~ 96 (103)
.+|++..+..++
T Consensus 85 ---d~I~~~~eq~Gg 96 (209)
T 3uf8_A 85 ---DIIEAHREQIGG 96 (209)
T ss_dssp ---EEEEEECSCTTC
T ss_pred ---ccchhhcccccc
Confidence 467776666554
No 105
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.96 E-value=9.9e-05 Score=47.70 Aligned_cols=69 Identities=9% Similarity=0.123 Sum_probs=57.4
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+.|.|+++-.+|.....+.+.+++....|.....++.- + +++.+||+|.|..|..++|.+++++.+||
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g-----~--~~~~vrF~FDG~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG-----L--SGRKLSFFFDGTKLSGRELPADLGMESGD 91 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT-----C--SSSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC-----C--CcccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 467888888888852235899999999999998887722 1 18899999999999999999999999995
No 106
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.85 E-value=0.00021 Score=44.90 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=54.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCc-ceEEEecCeecCCCCcccccCCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVT-EIKLISSGKILENNKTVGQCKIPYGEV 80 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~-~qrLI~~Gk~L~D~~tL~~~~i~~g~~ 80 (103)
..+++-+|-....++ -+.+.++++|.+|-..-..+ +| ++ .+||.|-|..|..++++.+|.+.++|.
T Consensus 8 ~~~~~~~~~~~~~dl-~f~I~~~t~v~kLi~ayc~~~~I~---------~~~~IrllFDGdRLdp~~tp~DlemeD~D~ 76 (82)
T 3goe_A 8 KLITLLLRSSKSEDL-RLSIPVDFTVKDLIKRYCTEVKIS---------FHERIRLEFEGEWLDPNDQVQSTELEDEDQ 76 (82)
T ss_dssp CEEEEEEEESSSCCE-EEEEETTSBHHHHHHHHHHHHTCC---------CCTTCEEEETTEECCTTSBGGGSSCCTTCE
T ss_pred HHHHHhhhccCCCCe-EEEecCCCCHHHHHHHHHHHcCCC---------cCceEEEEEcCcccCccCChhhhCCcCCce
Confidence 346677777666576 48999999999887666555 66 66 999999999999999999999999963
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.66 E-value=5.6e-06 Score=64.60 Aligned_cols=80 Identities=13% Similarity=0.176 Sum_probs=0.8
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCc
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~ 83 (103)
++.|+|+++- +|..+ .+.+..+++...|++...++. +++ ++++|++|.|+.|.+++|.+++++.+||
T Consensus 19 ~~~I~LKV~~-~g~~v-~FkIk~~t~l~kLm~aY~~r~-----G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDgD---- 85 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQ-----GKE--MDSLRFLYDGIRIQADQTPEDLDMEDND---- 85 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcEE-EEEEecCChHHHHHHHHHHHh-----CCC--cceEEEEECCeECCCCCChHHcCCCccc----
Confidence 4567777775 55444 689999999999999888772 122 8999999999999999999999999994
Q ss_pred eEEEEEEecCCCCCC
Q 034110 84 VIIMHVVVQPSLAKT 98 (103)
Q Consensus 84 ~~t~hlv~~~~~~~k 98 (103)
+|++..+..++-+
T Consensus 86 --~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 86 --IIEAHREQIGGMR 98 (360)
T ss_dssp -------------CH
T ss_pred --hhhhhhccCchHH
Confidence 6888887776643
No 108
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.44 E-value=0.0016 Score=42.42 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=53.6
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE--ecCeecC---CCCcccccCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILE---NNKTVGQCKIPYG 78 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~---D~~tL~~~~i~~g 78 (103)
.....|+||+.+|..+ .-.|..++||.+|.+.|......+ .....|+ |--|.|. .++||+++++...
T Consensus 11 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~~~-------~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps 82 (109)
T 2dzk_A 11 STIARIQFRLPDGSSF-TNQFPSDAPLEEARQFAAQTVGNT-------YGNFSLATMFPRREFTREDYKRRLLDLELAPS 82 (109)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSBHHHHHHHHHHHHTTS-------SCSCEEECSSSCCBCCTTTTTSBTGGGTCSSE
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhccCCC-------CCceEEEcCCCCcCCcccccCCCHHHCCCCCc
Confidence 3578999999999655 579999999999999999872100 3445554 3466675 3789999999865
Q ss_pred CCCCceEEEEEE
Q 034110 79 EVPGGVIIMHVV 90 (103)
Q Consensus 79 ~~~~~~~t~hlv 90 (103)
.++++.
T Consensus 83 ------a~L~v~ 88 (109)
T 2dzk_A 83 ------ASVVLL 88 (109)
T ss_dssp ------EEEEEE
T ss_pred ------eEEEEE
Confidence 556554
No 109
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.43 E-value=0.00088 Score=43.58 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=54.8
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCcceEEEe--cCeecC--CCCcccccCCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLIS--SGKILE--NNKTVGQCKIPYGE 79 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~-~p~~~e~~p~~~~~qrLI~--~Gk~L~--D~~tL~~~~i~~g~ 79 (103)
..+.|.||+.+|+.+ .-.|..++||.+|.+.|... +. +...+|+. =.|.|. .+.||+++++...
T Consensus 22 ~~~~IqiRlpdG~r~-~rrF~~~~tl~~v~~fv~~~~~~---------~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~- 90 (109)
T 2cr5_A 22 EVVTVALRCPNGRVL-RRRFFKSWNSQVLLDWMMKVGYH---------KSLYRLSTSFPRRALEVEGGSSLEDIGITVD- 90 (109)
T ss_dssp SEEEEEEECTTSCEE-EEEEESSSBTHHHHHHHHHHTCC---------TTTEEEECSSSCCBCCCCSSCBHHHHTCSSC-
T ss_pred CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCC-
Confidence 579999999999665 46999999999999999976 32 45566653 366775 5799999999976
Q ss_pred CCCceEEEEEEe
Q 034110 80 VPGGVIIMHVVV 91 (103)
Q Consensus 80 ~~~~~~t~hlv~ 91 (103)
.+++|.-
T Consensus 91 -----a~L~Ve~ 97 (109)
T 2cr5_A 91 -----TVLNVEE 97 (109)
T ss_dssp -----EEEEEEE
T ss_pred -----eEEEEEe
Confidence 5566543
No 110
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.42 E-value=0.00021 Score=44.90 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=54.8
Q ss_pred EEEEEEe--CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 7 IDIKFRL--YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 7 v~l~~~~--~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
+.|++.+ ..| ..+.+.++...||..|++.+.+.+.-+ ..+.+--++|....|.+|.++++|++|+|++||
T Consensus 5 I~ITidl~~y~~-~~~DLRIP~~~tvK~Li~~l~ea~~l~--~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 5 IDITIDLKHYNG-SVFDLRLSDYHPVKKVIDIAWQAQSVS--MPPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp EEEEEECTTTTC-CEEEEEEETTSBTTHHHHHHHHHSCCC--SCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred EEEEEEeeccCC-ceEEEECCCchhHHHHHHHHHHHhCCC--cCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 5566665 566 446899999999999999999984321 222222489999999999999999999999996
No 111
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.41 E-value=0.0014 Score=43.74 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=51.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCcceEEE--ecCeec--C-CCCcccccCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL--E-NNKTVGQCKIPY 77 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~-~p~~~e~~p~~~~~qrLI--~~Gk~L--~-D~~tL~~~~i~~ 77 (103)
+....|+||+.+|..+ .-.|..++||.+|.+.|... .+ .....|+ |-.|.| + .++||.++++..
T Consensus 41 ~~~t~IqIRlPdG~rl-~~rF~~~~tl~~V~~fV~~~~~~---------~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKRE-QITLPEQAKLLALVKHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCP 110 (124)
T ss_dssp SCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHHHCC---------TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEecCCCCcCCccCCCCCCHHHCCCCC
Confidence 4679999999999654 57999999999999999876 33 4556666 447778 3 479999999886
Q ss_pred C
Q 034110 78 G 78 (103)
Q Consensus 78 g 78 (103)
.
T Consensus 111 s 111 (124)
T 1wj4_A 111 Q 111 (124)
T ss_dssp S
T ss_pred c
Confidence 5
No 112
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.33 E-value=3.1e-05 Score=59.90 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=0.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCce
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~ 84 (103)
+.|.|+++- +|..+ .+.+..+++...|+....++.. ++ +.++||+|.|+.|.+++|.+++++.+||
T Consensus 29 ~~i~lkv~~-~~~~~-~~~i~~~~~~~~l~~~y~~~~g-----~~--~~~~~f~f~G~~i~~~~Tp~~l~med~d----- 94 (389)
T 4da1_A 29 THINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQG-----KE--MDSLRFLYDGIRIQADQAPEDLDMEDND----- 94 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEEEec-CCcEE-EEEECCCChHHHHHHHHHHHhC-----CC--cceEEEEECCEEcCCCCCHHHcCCCCCC-----
Confidence 467777765 55444 5899999999999999888832 22 9999999999999999999999999995
Q ss_pred EEEEEEecCCCC
Q 034110 85 IIMHVVVQPSLA 96 (103)
Q Consensus 85 ~t~hlv~~~~~~ 96 (103)
+|++.+...++
T Consensus 95 -~i~~~~~q~gg 105 (389)
T 4da1_A 95 -IIEAHREQIGG 105 (389)
T ss_dssp ------------
T ss_pred -Eeeeeeccccc
Confidence 56766665544
No 113
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.31 E-value=0.0028 Score=40.89 Aligned_cols=65 Identities=12% Similarity=0.164 Sum_probs=55.3
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+.|+|+++ .+|..+ -+.+-.++....|.....++ ++ ++++|++|.|..+.++.|.+++++.+||
T Consensus 19 ~~~IniKV~-~~g~ev-~FkIK~tt~l~KL~~aYc~r~gv~---------~~sirFlfDG~rI~~~~TP~~L~meD~D 85 (95)
T 2l76_A 19 PRLFPLKIR-CRADLV-RLPLRMSEPLQSVVDHMATHLGVS---------PSRILLLFGETELSPTATPRTLKLGVAD 85 (95)
T ss_dssp CCCEEEEEE-CSSSEE-EEEECSSSCTHHHHHHHHHHHTSC---------GGGEEEEETTEECCTTSCHHHHTCCSSC
T ss_pred CCeEEEEEE-cCCcEE-EEEEecCChHHHHHHHHHhhcCCC---------hhhEEEEECCcCCCCCCCHhHcCCCCCC
Confidence 356888888 456444 58999999999998887777 55 9999999999999999999999999996
No 114
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.26 E-value=0.0026 Score=48.55 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=53.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEe------cCeecCCCCcccccCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS------SGKILENNKTVGQCKIPYG 78 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~------~Gk~L~D~~tL~~~~i~~g 78 (103)
..++|++.+. + .+..+.|++++||.++...|.+++|. ..+.+.++=-|.- .|+.|+++.||+.|++.++
T Consensus 2 ~~~~~~~~~~-~-~~~~~~f~~~~~v~~~~~~i~e~~~~---~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~ 76 (371)
T 3ivf_A 2 VALSLKISIG-N-VVKTMQFEPSTMVYDACRMIRERIPE---ALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNG 76 (371)
T ss_dssp CCEEEEEEET-T-EEEEEEECTTCBHHHHHHHHHTTCGG---GGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTT
T ss_pred ccEEEEEEec-c-eeEEEEECCCCCHHHHHHHHHHhccc---ccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCC
Confidence 4688999998 4 66789999999999999999999862 1111133334433 4788999999999999988
Q ss_pred CC
Q 034110 79 EV 80 (103)
Q Consensus 79 ~~ 80 (103)
+.
T Consensus 77 ~~ 78 (371)
T 3ivf_A 77 DT 78 (371)
T ss_dssp CE
T ss_pred ce
Confidence 53
No 115
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.14 E-value=0.0026 Score=42.46 Aligned_cols=68 Identities=24% Similarity=0.379 Sum_probs=52.0
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEE--ecCeecC-CCCcccccCCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILE-NNKTVGQCKIPYG 78 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI--~~Gk~L~-D~~tL~~~~i~~g 78 (103)
+....|+||+.||..+ .-.|..++||.+|.+.|....+. . ......|+ |-.|.|+ ++.||+++++...
T Consensus 50 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~~----~--~~~~f~L~t~fPrk~l~d~~~TL~eagL~ps 120 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRL-VQKFNHSHRISDIRLFIVDARPA----M--AATSFVLMTTFPNKELADENQTLKEANLLNA 120 (127)
T ss_dssp SCCCCEEEEETTTTEE-EEECCSSCBHHHHHHHHHHHCSG----G--GTSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHhCcC----C--CCCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence 3568999999999755 57999999999999999987541 0 03455665 3467885 4799999999865
No 116
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=96.92 E-value=0.0012 Score=44.65 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=51.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCc--------------------------cCCCCC--cceEE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKT--------------------------IVPKAV--TEIKL 57 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e--------------------------~~p~~~--~~qrL 57 (103)
.|++++.|| .+..+.|+.+.+|.+++..|... ++..-| ..|... ..+||
T Consensus 13 ~LkV~llDg-~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDG-TVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTS-CEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCC-CEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 489999999 56689999999999999999988 331101 001111 24555
Q ss_pred Ee--cCeecCCCCcccccCCCCCC
Q 034110 58 IS--SGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 58 I~--~Gk~L~D~~tL~~~~i~~g~ 79 (103)
-. .+..|+++.||.+.||.+++
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTS
T ss_pred cccCCCCcccCCCcHHHcCCCCCC
Confidence 22 35789999999999999983
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=96.46 E-value=0.031 Score=36.88 Aligned_cols=80 Identities=18% Similarity=0.289 Sum_probs=49.5
Q ss_pred ceEEEEEEeCC-CCeeeeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCcceEEEe----cCeecCCCC---------
Q 034110 5 ELIDIKFRLYD-GSDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS----SGKILENNK--------- 68 (103)
Q Consensus 5 ~~v~l~~~~~~-g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~--e~~p~~~~~qrLI~----~Gk~L~D~~--------- 68 (103)
..+.|.+...+ +.+..++.+=.++||.++|++|...+=++. ...| .++++.|=+ +|++|.|..
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP-~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWP-RPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCC-CCCceeeEEecCCCCccccccCccceecCcc
Confidence 44566665543 223356788899999999999998821221 1222 367777765 356776532
Q ss_pred ----cccccCCCCCCCCCceEEEEEEe
Q 034110 69 ----TVGQCKIPYGEVPGGVIIMHVVV 91 (103)
Q Consensus 69 ----tL~~~~i~~g~~~~~~~t~hlv~ 91 (103)
||..|+|++| .+|-|+.
T Consensus 89 krLNTL~HY~V~dg------atl~l~~ 109 (111)
T 4e71_A 89 KRVNTLMHYNVRDG------ATLILSK 109 (111)
T ss_dssp CCCCBHHHHTCCTT------CEEEEEE
T ss_pred eEecchhhcCCCCC------CEEEEEe
Confidence 6777999998 5666543
No 118
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=96.45 E-value=0.03 Score=38.23 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=53.0
Q ss_pred ceEEEEEEeCCC-----CeeeeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCcceEEEe----cCe-ecCCC--C--
Q 034110 5 ELIDIKFRLYDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS----SGK-ILENN--K-- 68 (103)
Q Consensus 5 ~~v~l~~~~~~g-----~~~~~~~v~~~~tV~~lK~~i~~~~p~~~--e~~p~~~~~qrLI~----~Gk-~L~D~--~-- 68 (103)
..+.|.+....| .+-.++.|=.++||.++|++|...+=++. .-+| .++++-|=+ +|+ +|.|. .
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP-~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCC-CGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccCC-CccceeEEEecCCcCceEeeccCCccc
Confidence 356666655432 23457888899999999999998821221 2233 377777755 344 47554 2
Q ss_pred ---------cccccCCCCCCCCCceEEEEEEecCC
Q 034110 69 ---------TVGQCKIPYGEVPGGVIIMHVVVQPS 94 (103)
Q Consensus 69 ---------tL~~~~i~~g~~~~~~~t~hlv~~~~ 94 (103)
||+.|+|++| .+|-|+.+..
T Consensus 102 ~~~~wkrLNTL~HY~V~Dg------a~l~l~~~~~ 130 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDG------ATVALVPCLT 130 (138)
T ss_dssp EETTEEECCBHHHHTCCTT------CEEEEEEC--
T ss_pred ccCCceeecchhccCCCCC------CEEEEEECCC
Confidence 7888999999 6777766543
No 119
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=95.89 E-value=0.13 Score=34.63 Aligned_cols=67 Identities=21% Similarity=0.299 Sum_probs=45.4
Q ss_pred eeeEEeCCcchHHHHHHHHHhhCCCC--CccCCCCCcceEEEe-cC---e-ecCCC-------------CcccccCCCCC
Q 034110 19 IGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS-SG---K-ILENN-------------KTVGQCKIPYG 78 (103)
Q Consensus 19 ~~~~~v~~~~tV~~lK~~i~~~~p~~--~e~~p~~~~~qrLI~-~G---k-~L~D~-------------~tL~~~~i~~g 78 (103)
..++.+=.++||.++|++|...+=++ +...| .++++.|=+ .| + +|.|. -||..|+|++|
T Consensus 18 ~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dg 96 (127)
T 3h6n_A 18 SLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWP-RAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEG 96 (127)
T ss_dssp CEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSC-CGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTT
T ss_pred ceeeeeeccCchhhhhHHHHHHHhccCCcccCC-CCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCC
Confidence 34678888999999999999882222 11233 478888866 34 3 47652 26677999998
Q ss_pred CCCCceEEEEEEec
Q 034110 79 EVPGGVIIMHVVVQ 92 (103)
Q Consensus 79 ~~~~~~~t~hlv~~ 92 (103)
.+|-|+.+
T Consensus 97 ------atv~l~~~ 104 (127)
T 3h6n_A 97 ------ASLAMSLI 104 (127)
T ss_dssp ------CEEEEEEC
T ss_pred ------CEEEEEEc
Confidence 66766644
No 120
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=95.02 E-value=0.18 Score=33.47 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=49.9
Q ss_pred ceEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCC--CccCCCCCcceEEEe-cC---e-ecCCC--------
Q 034110 5 ELIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS-SG---K-ILENN-------- 67 (103)
Q Consensus 5 ~~v~l~~~~~~g--~~~~~~~v~~~~tV~~lK~~i~~~~p~~--~e~~p~~~~~qrLI~-~G---k-~L~D~-------- 67 (103)
..+.|.+...+| .+..++.+=.++||.++|++|...+=++ +...| .++++.|=+ .| + +|.|.
T Consensus 12 ~~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~ 90 (117)
T 4e74_A 12 KTLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRP-KAADMDLEWRQGSGARMILQDEDITTKIEN 90 (117)
T ss_dssp CEEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECTTSCEEEECSSSTTCCC--
T ss_pred EEEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCC-CCCceeEEEecCCCCceEeecCCCccEecC
Confidence 345565544432 2334677778999999999999882122 12233 377888865 34 3 46552
Q ss_pred -----CcccccCCCCCCCCCceEEEEEEec
Q 034110 68 -----KTVGQCKIPYGEVPGGVIIMHVVVQ 92 (103)
Q Consensus 68 -----~tL~~~~i~~g~~~~~~~t~hlv~~ 92 (103)
-||..|+|++| .+|-|+.+
T Consensus 91 ~wkrLNTL~HY~V~dg------atl~l~~~ 114 (117)
T 4e74_A 91 DWKRLNTLAHYQVPDG------SVVALVSK 114 (117)
T ss_dssp -CCCCCBHHHHTCCTT------CEEEEEEC
T ss_pred cceEeccccccCCCCC------CEEEEEeC
Confidence 25667999998 66766554
No 121
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.66 E-value=0.45 Score=30.13 Aligned_cols=70 Identities=9% Similarity=0.113 Sum_probs=55.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceE
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~ 85 (103)
+|.+...+|.. ..+.+.|++++.+|=+..-+. +. +++-.|.|++|.|+=..++.-.||.+| .
T Consensus 11 ~v~Vl~~n~rr-~~VKvtp~t~L~~VL~eaC~K~gl~---------~~~~~Lkh~~k~lDLSlpfRlsgLpnn------A 74 (90)
T 2al3_A 11 AVSVLAPNGRR-HTVKVTPSTVLLQVLEDTCRRQDFN---------PSEYDLKFQRTVLDLSLQWRFANLPNN------A 74 (90)
T ss_dssp CEEEECTTSCE-EEECCCTTSBHHHHHHHHHHHTTCC---------GGGCEEEETTEEESSSCBHHHHCCCSS------C
T ss_pred EEEEEcCCCcE-EEEEECCCCCHHHHHHHHHHHhCCC---------hhhCeEEeCCEeccccceeEecCCCCC------C
Confidence 78888889954 468999999999964444444 43 778899999999999999999999988 6
Q ss_pred EEEEEecC
Q 034110 86 IMHVVVQP 93 (103)
Q Consensus 86 t~hlv~~~ 93 (103)
.+-|+...
T Consensus 75 kLELv~~s 82 (90)
T 2al3_A 75 KLEMVPVS 82 (90)
T ss_dssp EEEEECSS
T ss_pred EEEEEEcc
Confidence 67766543
No 122
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=93.17 E-value=0.74 Score=38.28 Aligned_cols=80 Identities=23% Similarity=0.315 Sum_probs=50.7
Q ss_pred eEEEEEEeCCC-----CeeeeEEeCCcchHHHHHHHHHhhCCCC--CccCCCCCcceEEEe-c---Ce-ecCCCC-----
Q 034110 6 LIDIKFRLYDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS-S---GK-ILENNK----- 68 (103)
Q Consensus 6 ~v~l~~~~~~g-----~~~~~~~v~~~~tV~~lK~~i~~~~p~~--~e~~p~~~~~qrLI~-~---Gk-~L~D~~----- 68 (103)
.+.|.+...+| .+..++.+=.++||.++|++|...+=++ +.-+| .++++.|=+ . |+ +|.|..
T Consensus 257 ~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~~ 335 (644)
T 3hm6_X 257 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRP-DPRTLDVEWRSGVAGHLILSDEDVTSEV 335 (644)
T ss_dssp EEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred eEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCCcceEEeeCCCCceeecccCcccee
Confidence 45666655433 2334678889999999999999872112 12233 477887765 2 34 466644
Q ss_pred --------cccccCCCCCCCCCceEEEEEEec
Q 034110 69 --------TVGQCKIPYGEVPGGVIIMHVVVQ 92 (103)
Q Consensus 69 --------tL~~~~i~~g~~~~~~~t~hlv~~ 92 (103)
||+.|+|++| .+|-|+.+
T Consensus 336 ~~~wkrLNTL~HY~V~dg------a~v~L~p~ 361 (644)
T 3hm6_X 336 QGLWRRLNTLQHYKVPDG------ATVALVPC 361 (644)
T ss_dssp ETTEEECCBTTTTTCCTT------CEEEEEEC
T ss_pred cCcceeecchhhcCCCCC------cEEEEEec
Confidence 7888999999 55655543
No 123
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=92.45 E-value=1.4 Score=29.49 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=45.7
Q ss_pred eEEEEEEe---CCC-----CeeeeEEeCCcchHHHHHHHHHhh-CC-CCCccCCCCCcceEEEe-cC---eecCCC----
Q 034110 6 LIDIKFRL---YDG-----SDIGPFRYSSASTVDMLKQRIVSD-WP-KGKTIVPKAVTEIKLIS-SG---KILENN---- 67 (103)
Q Consensus 6 ~v~l~~~~---~~g-----~~~~~~~v~~~~tV~~lK~~i~~~-~p-~~~e~~p~~~~~qrLI~-~G---k~L~D~---- 67 (103)
.+.|.+.. ..+ .+..++.+=.++||.++|++|... +- .+....+ .++++.|=+ .| ++|.|.
T Consensus 19 tLtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~-r~~d~dLEwr~g~~~~~L~D~D~tS 97 (126)
T 3kuz_A 19 TVALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGL-QLNEIGLELQMGTRQKELLDIDSSS 97 (126)
T ss_dssp EEEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSS-CGGGEEEEEEETTEEEEECSSCTTC
T ss_pred EEEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCC-CccccceEEecCCCcceeeccCCcc
Confidence 45677666 332 233467888999999999999987 30 0111111 256676654 23 345332
Q ss_pred ----------CcccccCCCCCCCCCceEEEEEE
Q 034110 68 ----------KTVGQCKIPYGEVPGGVIIMHVV 90 (103)
Q Consensus 68 ----------~tL~~~~i~~g~~~~~~~t~hlv 90 (103)
-||+.|+|++| .++-++
T Consensus 98 ~~~e~~wkrLNTL~HY~V~Dg------atlal~ 124 (126)
T 3kuz_A 98 VILEDGITKLNTIGHYEISNG------STIKVF 124 (126)
T ss_dssp CBCTTSCBCCCBTGGGTCCTT------CEEEEE
T ss_pred eEecCCeeEeccccccCCCCC------CEEEEe
Confidence 24556888888 556544
No 124
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=91.80 E-value=1.7 Score=36.05 Aligned_cols=81 Identities=14% Similarity=0.274 Sum_probs=51.1
Q ss_pred eEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCC--CccCCCCCcceEEEe----cCe-ecCCC---------
Q 034110 6 LIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS----SGK-ILENN--------- 67 (103)
Q Consensus 6 ~v~l~~~~~~g--~~~~~~~v~~~~tV~~lK~~i~~~~p~~--~e~~p~~~~~qrLI~----~Gk-~L~D~--------- 67 (103)
.+.|.+...+| .+..++.|=.++||.++|++|...+=++ +.-.| .++++.|=+ .|+ +|.|.
T Consensus 233 ~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP-~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 233 TLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRP-KAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp EEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCC-CCCccceeEeeCCCCceeeccCCccccccCc
Confidence 45666655443 2334678889999999999999882112 12233 478888855 234 45442
Q ss_pred ----CcccccCCCCCCCCCceEEEEEEecC
Q 034110 68 ----KTVGQCKIPYGEVPGGVIIMHVVVQP 93 (103)
Q Consensus 68 ----~tL~~~~i~~g~~~~~~~t~hlv~~~ 93 (103)
-||..|+|++| .+|-|+.+.
T Consensus 312 wkrLNTL~HY~V~Dg------a~v~L~p~~ 335 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDG------SLVALVPKQ 335 (627)
T ss_dssp EEECCBTTTTTCCTT------CEEEEEEC-
T ss_pred eeEecchhhcCCCCC------ceEEEEecc
Confidence 26778999999 566665543
No 125
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=91.53 E-value=1.5 Score=31.14 Aligned_cols=53 Identities=25% Similarity=0.391 Sum_probs=39.1
Q ss_pred eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-ceEEE--e-cC--eecCC-CCcccccCCCCC
Q 034110 19 IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLI--S-SG--KILEN-NKTVGQCKIPYG 78 (103)
Q Consensus 19 ~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~-~qrLI--~-~G--k~L~D-~~tL~~~~i~~g 78 (103)
.....++..+||.+|++.+...+- +| .+ ..||- | .+ ..|+| +.||++++|.++
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~-----i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~ 200 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFS-----IP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQG 200 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTT-----CC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTT
T ss_pred ceEEEEcccchHHHHHHHHHHHhC-----CC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCC
Confidence 345788999999999999999832 22 54 68883 3 22 25655 579999999988
No 126
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=89.48 E-value=0.74 Score=29.99 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=31.5
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
..+.|.+.+.+|.- .+++++.+.|+.++|+.++++
T Consensus 18 ~~v~v~~LlPnGi~-i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 18 PRILVECLLPNGMI-VTLECLREATLITIKHELFKE 52 (108)
T ss_dssp SEEEEEEECTTSCE-EEEEEETTCBHHHHHHHHHHH
T ss_pred CcEEEEEEcCcEEE-EEEEeeccccHHHHHHHHHHH
Confidence 56999999999954 478999999999999999988
No 127
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=89.33 E-value=4.5 Score=28.88 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=38.8
Q ss_pred eeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCc-ceEEEe-c----CeecCC-CCcccccCCCCC
Q 034110 20 GPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVT-EIKLIS-S----GKILEN-NKTVGQCKIPYG 78 (103)
Q Consensus 20 ~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~-~qrLI~-~----Gk~L~D-~~tL~~~~i~~g 78 (103)
....++..+||.+|++.+... +| .+ ..||-. . ...|.| +.||+++++.++
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~---------~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~ 212 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIP---------AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQG 212 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCC---------TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTT
T ss_pred EEEEecccCcHHHHHHHHHHHhCCC---------CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCC
Confidence 346779999999999999998 54 54 688843 2 236665 599999999988
No 128
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=85.67 E-value=8.7 Score=33.76 Aligned_cols=80 Identities=13% Similarity=0.214 Sum_probs=56.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCcceEEEecCe-----ec-CCCCcccccC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISSGK-----IL-ENNKTVGQCK 74 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~---~p~~~e~~p~~~~~qrLI~~Gk-----~L-~D~~tL~~~~ 74 (103)
.+.|.|-|.+++|. +.+++++.++|+.++|+.|+++ .|-. ..-.++++-.+.+-.+ .+ ++.+.|.++.
T Consensus 49 ~~~v~vd~LLPnGi-~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~--~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~ 125 (1092)
T 2y3a_A 49 DGAISVDFLLPTGI-YIQLEVPREATISYIKQMLWKQVHNYPMF--NLLMDIDSYMFACVNQTAVYEELEDETRRLCDVR 125 (1092)
T ss_dssp CSEEEEEEECTTCC-EEEEEEETTCBHHHHHHHHHHHGGGSTTT--TSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGC
T ss_pred CCceEEEEECCCce-EEEEEecCcccHHHHHHHHHHHHHhCCch--hccCCcceeEEEEecCCceEEEeecCceeeEeec
Confidence 46799999999995 4579999999999999999998 3311 1223477777777333 34 5558888876
Q ss_pred CCCCCCCCceEEEEEEecC
Q 034110 75 IPYGEVPGGVIIMHVVVQP 93 (103)
Q Consensus 75 i~~g~~~~~~~t~hlv~~~ 93 (103)
.-.+ .++++-+.
T Consensus 126 ~~~p-------~l~lve~~ 137 (1092)
T 2y3a_A 126 PFLP-------VLKLVTRS 137 (1092)
T ss_dssp BSSS-------CEEEEESC
T ss_pred ccce-------EEEEEecC
Confidence 4433 36766663
No 129
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=84.34 E-value=5.5 Score=24.77 Aligned_cols=71 Identities=6% Similarity=0.045 Sum_probs=49.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCee--cCCCCcccccCCCCCC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI--LENNKTVGQCKIPYGE 79 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~--L~D~~tL~~~~i~~g~ 79 (103)
+-|.-++-+.-....+.++..+|+.++-++++... -+--.++.+.-+|..++|+. |.++.|+++.||..-+
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~--VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHC--VNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTT--BTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhh--cceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 33444444332333478899999999999999771 00011123558999999997 9999999999998654
No 130
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=82.00 E-value=7.1 Score=24.30 Aligned_cols=33 Identities=9% Similarity=0.216 Sum_probs=26.1
Q ss_pred EEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhh
Q 034110 8 DIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSD 40 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~-~~~tV~~lK~~i~~~ 40 (103)
.|.|++.+.++...+.|+ ...+|.+||+.|.++
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~ 41 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGR 41 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHH
Confidence 356666777777778887 456999999999988
No 131
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=79.02 E-value=7.2 Score=23.89 Aligned_cols=54 Identities=9% Similarity=0.112 Sum_probs=35.4
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCC-----CCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVP-----KAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 20 ~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p-----~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
..+++.+..||.+|.+.+...+| ++...- .-...+.+.-+|+.... +..+++||
T Consensus 29 ~~~e~~~~~Tv~~Ll~~L~~~~p-~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~dGD 87 (98)
T 1vjk_A 29 EEIELPEGARVRDLIEEIKKRHE-KFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELKDGD 87 (98)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCG-GGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCCTTC
T ss_pred EEEECCCCCCHHHHHHHHHhHCh-hHHHHhhccccccCCcEEEEECCEECCC-----CCCCCCCC
Confidence 35677788999999999998865 221110 00245677888888754 34567785
No 132
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=78.47 E-value=3.3 Score=24.02 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=33.1
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcce--EEEecCeecCCCCcccccCCCCCC
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEI--KLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~q--rLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+++....||.+|.+.+...+| + ...+ .+..+|+....+ ..+++||
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~p-~-------~~~v~~~v~vNg~~v~~~-----~~L~~gD 66 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFERYP-Q-------INNKKFQVAVNEEFVQKS-----DFIQPND 66 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHHCG-G-------GTTCCCEEEETTEEECTT-----SEECTTC
T ss_pred EEECCCCCCHHHHHHHHHHHCc-c-------hhcceEEEEECCEECCCC-----CCcCCCC
Confidence 4566778899999999988876 1 1334 788899988654 3466775
No 133
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=77.23 E-value=6.1 Score=25.16 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=44.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CC--CCC---ccCCCCCcceEEEecCeecCCCCcccccC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WP--KGK---TIVPKAVTEIKLISSGKILENNKTVGQCK 74 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p--~~~---e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~ 74 (103)
..+.|+|-..||+. ..+.|++++|+.++-+.+.+. .. ..| |..|. ++.-|.++|.+.|-+.-
T Consensus 8 ~k~vvkvf~~Dgss-ksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~-------L~~ER~~EDHE~vvevl 76 (100)
T 1wgr_A 8 RPHVVKVYSEDGAC-RSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPH-------LALERGLEDHESVVEVQ 76 (100)
T ss_dssp SCEEEEEEETTSCE-EEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETT-------TTEEEEECSSSCHHHHH
T ss_pred CCEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCC-------CCcEEeccCchhHHHHH
Confidence 56889999999955 579999999999999999988 22 123 23331 12336788888776643
No 134
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=75.86 E-value=6.6 Score=23.41 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=34.7
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCcc-CCCC----CcceEEEecCeecCCCCcccccCCCCCC
Q 034110 20 GPFRYSSASTVDMLKQRIVSDWPKGKTI-VPKA----VTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 20 ~~~~v~~~~tV~~lK~~i~~~~p~~~e~-~p~~----~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
..++++...||.+|.+.+...+| ++.. +-.. .....+.-+|+....+ ..+.+||
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p-~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gD 78 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHP-ALESRVFGDDGELYDHINVLRNGEAAALG-----EATAAGD 78 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCG-GGHHHHBCTTSCBCTTSEEEETTEECCTT-----SBCCTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHCc-HHHHHHhccCCcccccEEEEECCEECCCC-----cccCCCC
Confidence 35777778899999999999876 2110 0000 1236777788887653 3466774
No 135
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=74.91 E-value=13 Score=23.28 Aligned_cols=68 Identities=10% Similarity=0.102 Sum_probs=47.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEEecCCCC-CCc
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA-KTK 99 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv~~~~~~-~k~ 99 (103)
...++=...+..||..++.++.- +-+.=.+..++..|+++++|-+-.++-. +.+.+.+-+++..+ .+|
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~i-------~L~~y~f~LQd~~L~~~k~LvdQcVqge----GlVQinvqik~~~~~~~R 74 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQC-------SLDAHEICLQDIQLDPDRSLFDQGVKTD----GTVQLSVQVISYQGMEPK 74 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHCS-------CCSSCEEEETTEECCTTSBTTTSSCCCC----SEEEEEEEEECCTTCCCE
T ss_pred hhhccccCcHHHHHHHHHHHhcC-------CcccCeEEeeccccCCCccHHHhhcccc----cEEEEEEEEEecCCCCcc
Confidence 34566677789999999998431 1566667778888999999998888733 34666666666544 443
No 136
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=72.27 E-value=6.7 Score=23.25 Aligned_cols=49 Identities=10% Similarity=0.257 Sum_probs=32.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCC
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~ 68 (103)
.|++++. |.....+++++..||++|=+.+. +| ++..-...+|+.+.-++
T Consensus 2 ~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~Lg--l~---------~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVV-GEETSEVAVDDDGTYADLVRAVD--LS---------PHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECS-SSSEEEEECSTTCSHHHHHHTTC--CC---------SSCCCEECCCCCCCTTS
T ss_pred EEEEEEe-CccceeEEcCCCCcHHHHHHHcC--CC---------cceEEEEECCEECCHHH
Confidence 3566666 43445689999999988643332 55 66666778898885554
No 137
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=72.23 E-value=9.2 Score=23.55 Aligned_cols=38 Identities=5% Similarity=0.032 Sum_probs=30.4
Q ss_pred eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCe
Q 034110 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (103)
Q Consensus 18 ~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk 62 (103)
.+..+.+.++.+..+|.++|+++.+ +| ++.++|-|.-.
T Consensus 14 ~tvairvp~~~~y~~L~~~l~~kL~-----l~--~~~~~LsYk~~ 51 (83)
T 1oey_A 14 YTVVMKTQPGLPYSQVRDMVSKKLE-----LR--LEHTKLSYRPR 51 (83)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHTT-----CC--GGGCCEEECCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC-----CC--cceeEEEeeCC
Confidence 4467999999999999999999944 12 78888888653
No 138
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=71.77 E-value=12 Score=21.54 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=32.0
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.++++...||.+|.+.+. ++ +....+..+|.++..+. .+++||
T Consensus 17 ~~~~~~~~tv~~Ll~~l~--~~---------~~~v~vavN~~~v~~~~-----~L~~gD 59 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGELE--IP---------IETVVVKKNGQIVIDEE-----EIFDGD 59 (70)
T ss_dssp EEEESSCCBHHHHHHHTT--CC---------TTTEEEEETTEECCTTS-----BCCTTC
T ss_pred eEECCCCCcHHHHHHHhC--CC---------CCCEEEEECCEECCCcc-----cCCCCC
Confidence 367888899999988774 33 56677889999997665 456775
No 139
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=68.65 E-value=14 Score=23.00 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=28.0
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p 42 (103)
..+-|+|-.- + ++..+.+.++.+..+|+.+|..++-
T Consensus 11 ~~~KVK~yy~-D-DIiAIrvP~di~~~~L~dKi~~RLk 46 (85)
T 1ip9_A 11 KTTKIKFYYK-D-DIFALMLKGDTTYKELRSKIAPRID 46 (85)
T ss_dssp CCEEEEECBT-T-CCEEEEECSCCCHHHHHHHHHHHHT
T ss_pred CceEEEEEec-C-cEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444333 3 7889999999999999999999965
No 140
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=68.14 E-value=9.4 Score=21.60 Aligned_cols=29 Identities=17% Similarity=0.065 Sum_probs=21.6
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
+++.+.+|. ..+++..+|+.+|-+.+...
T Consensus 3 i~i~~p~g~---~~~~~~g~T~~dla~~i~~~ 31 (73)
T 2kmm_A 3 VMVFTPKGE---IKRLPQGATALDFAYSLHSD 31 (73)
T ss_dssp EEEECTTCC---EEEECTTCBHHHHHHHHCSH
T ss_pred EEEEcCCCC---EEEcCCCCcHHHHHHHHhhc
Confidence 566667883 36888899999998887544
No 141
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.37 E-value=19 Score=22.57 Aligned_cols=66 Identities=15% Similarity=0.129 Sum_probs=49.5
Q ss_pred CceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEe---cCeecCCCCcccccCCCC
Q 034110 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS---SGKILENNKTVGQCKIPY 77 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~---~Gk~L~D~~tL~~~~i~~ 77 (103)
|.+|++-+...-. +...+.|+|..+..+|--.|=+++.-| ++..-|.. ++..|+=+.+|.+|||.+
T Consensus 8 E~TvRLvVNy~~t-QKtVvRVSP~vpL~ellp~IC~Kcefd-------p~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKT-QKTIVRVSPHASLQELAPIICSKCEFD-------PLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTT-EEEEEEECSSSCTTTHHHHHHHHTTCC-------TTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCc-ceeEEEeCCCCcHHHHHHHHhhcccCC-------hhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 4678888888755 334689999999999999998884422 55555543 456788889999999984
No 142
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=65.84 E-value=31 Score=25.36 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=38.7
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEecCe-ec-CCCCcccccC
Q 034110 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK-IL-ENNKTVGQCK 74 (103)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~Gk-~L-~D~~tL~~~~ 74 (103)
|.+..- ....+.+.+..|+.++++.++++ ++ ++.|.|+|.+. +. +-..+.++|.
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~t~i~---------~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 316 FSLQQM-TAHKIYIHSYNTATIFHELVYKQTKII---------SSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EETTTT-EEEEEEECTTCBHHHHHHHHHHHHCCC---------STTEEEESSSSEECCCSSCBTTSSC
T ss_pred EEeccc-eEEEEEcCchhHHHHHHHHHHHhcCCC---------hhhhHHHhcCCCCCCCCCCccccCC
Confidence 333344 55567888999999999999998 55 89999999994 44 3334444444
No 143
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=63.22 E-value=24 Score=21.81 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=42.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccC-CCCCcceEEEecC--eecCCCCcccccCCCCCC
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIV-PKAVTEIKLISSG--KILENNKTVGQCKIPYGE 79 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~-p~~~~~qrLI~~G--k~L~D~~tL~~~~i~~g~ 79 (103)
.+.++.++|+.++-++++... -+--. |..-.-+|..++| +.|..+.|+++.+|..-+
T Consensus 16 LV~VDt~dTmdqVA~kvA~Hs--VGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e 75 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHS--INRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTE 75 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTT--BTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred EEEecCCCcHHHHHHHHhhhh--cceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCce
Confidence 468899999999999999770 00001 1113368889999 999999999999998653
No 144
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=61.68 E-value=8.4 Score=25.34 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=25.8
Q ss_pred eEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEec
Q 034110 21 PFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISS 60 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~ 60 (103)
.+.|-.++|+.+|++.|++. +| +++|||-.-
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~---------~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFP---------QDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCC---------GGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHHhCCC---------cccEEEEEe
Confidence 46777899999999999998 66 899999543
No 145
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=61.30 E-value=10 Score=33.35 Aligned_cols=68 Identities=12% Similarity=0.217 Sum_probs=46.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCcceEEEecCe-----ec-CCCCcccccCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISSGK-----IL-ENNKTVGQCKIP 76 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~---~p~~~e~~p~~~~~qrLI~~Gk-----~L-~D~~tL~~~~i~ 76 (103)
.|.|-|.+.+|. +.+++++.++|+.++|+.++.+ +|-... . .++++--+.|-.. .+ ++.+.|-++.+-
T Consensus 42 ~i~vd~LLPnGi-~i~l~v~~~~tl~~iK~~lw~~a~~~pl~~~-l-~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~~ 118 (1091)
T 3hhm_A 42 RILVECLLPNGM-IVTLECLREATLITIKHELFKEARKYPLHQL-L-QDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 118 (1091)
T ss_dssp -EEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHHGGGSTTGGG-C-CCGGGCEEEEEBTTSCEEEECCTTSBTTTSCBS
T ss_pred ceEEEEEcCCCe-EEEEEecCCCcHHHHHHHHHHHHHhCcchhh-c-CChhHeEEEEEccCceEeeeecCceeeEEeecc
Confidence 399999999995 4579999999999999999988 331111 1 2355555655443 34 444566666644
No 146
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=57.78 E-value=12 Score=30.86 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=40.2
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCe-ecCCCCcccccCCC
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-ILENNKTVGQCKIP 76 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk-~L~D~~tL~~~~i~ 76 (103)
..+ ....+.+.+..|+.++++.|.++. ++| ++.|.||+.+. .++.....++|.+.
T Consensus 319 ~~~-~~~~~~i~~~~tl~~l~~~i~~~T-----~i~--~~~q~~~~~~~~~~~p~~~~~~~~~~ 374 (676)
T 3qa8_A 319 VSG-RVHTYPVTENENLQNLKSWLQQDT-----GIP--EEEQELLQASGLALNSAQPLTQYVID 374 (676)
T ss_dssp SSS-CCCEEECCTTCCHHHHHHHHHTTS-----CCC--STTCEEESSSSCCCCTTSCGGGSCCC
T ss_pred ccc-ccceeecCCCccHHHHHHHHHHHh-----CCC--HHHHHHHhccCCCCCCCcchhhheec
Confidence 344 445688999999999999999981 233 88999988765 55666677777543
No 147
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=56.26 E-value=59 Score=24.12 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEec---------CeecCCCCcccccCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---------GKILENNKTVGQCKIP 76 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~---------Gk~L~D~~tL~~~~i~ 76 (103)
.+.+++.+.||.. ..+.+++++|+.+|=+.|.+.+- +. +.+..-|.+. -+.|+-++++.+-+..
T Consensus 85 ~~~~~V~l~dg~~-~~~~vd~~tt~~el~~~v~~~l~-----L~-e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~ 157 (371)
T 3ivf_A 85 QRPLKIRMLDGTV-KTIMVDDSKTVTDMLMTICARIG-----IT-NHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVE 157 (371)
T ss_dssp EEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHHHTT-----CS-CGGGEEEECCC----------CCCTTSBTGGGTCC
T ss_pred eeEEEEECcCCCE-EEEEECCCCCHHHHHHHHHHHcC-----CC-CccccEEEEEecccccchHHHHHhcCchhHhhCCC
Confidence 4778899999954 57899999999999999998821 10 1344444432 2456666666665443
Q ss_pred CCCCCCceEEEEEEec
Q 034110 77 YGEVPGGVIIMHVVVQ 92 (103)
Q Consensus 77 ~g~~~~~~~t~hlv~~ 92 (103)
.. .++++-++
T Consensus 158 ~~------~~l~frvK 167 (371)
T 3ivf_A 158 EH------ETLLLRRK 167 (371)
T ss_dssp TT------CEEEEEEC
T ss_pred CC------ceEEEEEE
Confidence 22 35666444
No 148
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=54.01 E-value=17 Score=26.49 Aligned_cols=73 Identities=12% Similarity=-0.063 Sum_probs=47.9
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEec---C--eecCCCCcccccCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPY 77 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~ 77 (103)
..+.+++.+.||.. ..+.+++.+|+.+|=+.|.+. +. + .+..=|.|. | ..|+.++.+.+....
T Consensus 16 ~~~~~~V~lldgt~-~~~~vd~~tt~~el~~~v~~~l~L~-e-------~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~- 85 (296)
T 3qij_A 16 FQGHCKVSLLDDTV-YECVVEKHAKGQDLLKRVCEHLNLL-E-------EDYFGLAIWDNATSKTWLDSAKEIKKQVRG- 85 (296)
T ss_dssp -CCEEEEECTTSCE-EEEECCTTCBHHHHHHHHHHHHTCS-S-------GGGEEEEEEEETTEEEECCTTSBHHHHC---
T ss_pred ceEEEEEEccCCCE-EEEEECCCCCHHHHHHHHHHHcCCC-C-------cceeEEEEEcCCCccchhccchhHHHhcCC-
Confidence 46889999999954 579999999999999999988 32 1 333333332 2 367777777665321
Q ss_pred CCCCCceEEEEEEec
Q 034110 78 GEVPGGVIIMHVVVQ 92 (103)
Q Consensus 78 g~~~~~~~t~hlv~~ 92 (103)
. +.++++-++
T Consensus 86 ~-----~~~l~frvk 95 (296)
T 3qij_A 86 V-----PWNFTFNVK 95 (296)
T ss_dssp ------CCEEEEEES
T ss_pred C-----CcEEEEEEE
Confidence 1 245666555
No 149
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.49 E-value=87 Score=25.22 Aligned_cols=75 Identities=15% Similarity=0.164 Sum_probs=51.3
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEec---C--eecCCCCcccccCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPY 77 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~~---G--k~L~D~~tL~~~~i~~ 77 (103)
..+.++|.+.|| .+ .+.|++++|+.+|=..|... +. .....=|.|. | .+|+.+.+|.+.++..
T Consensus 3 k~i~v~V~llDg-t~-e~~vd~~tt~~ell~~V~~~LgL~--------e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~ 72 (575)
T 2i1j_A 3 KSMNVRVTTMDA-EL-EFAIQQTTTGKQLFDQVVKTIGLR--------EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKK 72 (575)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHTCC--------CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCC
T ss_pred ceEEEEEEeCCC-eE-EEEECCCCCHHHHHHHHHHHcCCC--------CccceeEEEEecCcchhHhhccccHHHhcccC
Confidence 358899999999 54 59999999999999999988 33 1333444442 1 3677778887765543
Q ss_pred CCCCCceEEEEEEecC
Q 034110 78 GEVPGGVIIMHVVVQP 93 (103)
Q Consensus 78 g~~~~~~~t~hlv~~~ 93 (103)
+ .+..+++-++-
T Consensus 73 ~----~~~~L~FRvkf 84 (575)
T 2i1j_A 73 E----NPLQFKFRAKF 84 (575)
T ss_dssp C----SSEEEEEEESS
T ss_pred C----CCeEEEEEEEE
Confidence 3 34567766653
No 150
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=52.15 E-value=5.5 Score=23.47 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=30.3
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+++++..||.+|.+.+. ++ ...+.+..+|++...+ ..+.+||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~--~~---------~~~v~VavNg~~v~~~-----~~L~dGD 66 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG--FN---------TESAIAKVNGKVVLED-----DEVKDGD 66 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT--CS---------SCSSCEEETTEEECSS-----SCCCSSC
T ss_pred EEECCCCCcHHHHHHHhC--CC---------CcCEEEEECCEECCCC-----CCcCCCC
Confidence 457777889999877654 44 5566788899988654 4566675
No 151
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=51.17 E-value=41 Score=20.74 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=36.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCccc
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVG 71 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~ 71 (103)
.++.|+.... | ++..+.++++.+-.+|.++|.+.++-. ....+.|-|.--. .|..|++
T Consensus 5 ~~vkvK~~~~-g-di~~~~v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEe-GD~itis 62 (89)
T 1vd2_A 5 SQVRVKAYYR-G-DIMITHFEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEE-GDPCTVS 62 (89)
T ss_dssp SCEEEEEESS-S-CEEEEEECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSS-SCCEECC
T ss_pred CeEEEEEEeC-C-eEEEEECCCCCCHHHHHHHHHHHhCCC------CCCeEEEEEECCC-CCccccc
Confidence 3455554443 4 677889999999999999999996511 0234666555432 3334444
No 152
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=50.07 E-value=23 Score=19.88 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=33.9
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+|. ++++....||.+|.+.+. ++ .....+..+|+++... ...+..+++||
T Consensus 5 vNg~---~~~~~~~~tv~~ll~~l~--~~---------~~~v~vavN~~~v~~~-~~~~~~L~~gD 55 (66)
T 1f0z_A 5 FNDQ---AMQCAAGQTVHELLEQLD--QR---------QAGAALAINQQIVPRE-QWAQHIVQDGD 55 (66)
T ss_dssp ESSC---EECCCTTCCHHHHHHHHT--CC---------CSSEEEEETTEEECHH-HHTTCCCCTTE
T ss_pred ECCE---EEEcCCCCcHHHHHHHcC--CC---------CCCEEEEECCEECCch-hcCCcCCCCCC
Confidence 4663 457788899999988874 33 5667788888887431 11234567774
No 153
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=49.47 E-value=38 Score=21.08 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=40.6
Q ss_pred ceEEEEEEeCCCCe---eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCe-ec-CCCCcccc
Q 034110 5 ELIDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-IL-ENNKTVGQ 72 (103)
Q Consensus 5 ~~v~l~~~~~~g~~---~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk-~L-~D~~tL~~ 72 (103)
..|.|+|+-.+.-. -..+.|+.+.||+++-..|..++. .+.+=| |-+. ++ .-++++++
T Consensus 12 ~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~---------l~alFl-yvn~~~~Ps~d~~m~~ 74 (96)
T 1wz3_A 12 QKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---------SDSLFV-YVNSAFSPNPDESVID 74 (96)
T ss_dssp CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT---------CSSCEE-EEEEEECCCTTSBHHH
T ss_pred CeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcC---------CceEEE-EECCcccCChhhHHHH
Confidence 48999998875411 124789999999999999999854 334444 5555 55 55677775
No 154
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=49.24 E-value=35 Score=19.48 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCcchHHHHHHHHHhhCCCCCc-cCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 25 SSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 25 ~~~~tV~~lK~~i~~~~p~~~e-~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+..||.+|.+.+...+| ++. .++ .....+..+|+....+ ..+++||
T Consensus 23 ~~~~tv~~ll~~L~~~~p-~~~~~l~--~~~~~v~vN~~~v~~~-----~~l~~gD 70 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSD-RWALALE--DGKLLAAVNQTLVSFD-----HPLTDGD 70 (81)
T ss_dssp SCCSBHHHHHHHHHTTCH-HHHHHHC--CTTCEEEETTEECCTT-----CBCCTTC
T ss_pred CCCCCHHHHHHHHHHHCh-hHHHHhc--CCCEEEEECCEECCCC-----CCCCCCC
Confidence 467799999999987754 111 111 2345678888877543 4567774
No 155
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=44.79 E-value=84 Score=22.57 Aligned_cols=74 Identities=11% Similarity=0.099 Sum_probs=51.1
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEe--cCe--ecCCCCcccccCCCCC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS--SGK--ILENNKTVGQCKIPYG 78 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~--~Gk--~L~D~~tL~~~~i~~g 78 (103)
..+.+++.+.|| ++ .+.+++++|+.+|=+.|.+. +. +.+..=|.| .|. .|+.++.|.+..+..+
T Consensus 21 ~~~~~~V~lldg-~~-~~~v~~~t~~~el~~~v~~~l~L~--------e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~ 90 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EM-EFNCEMKWKGKDLFDLVCRTLGLR--------ETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKE 90 (314)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHTCC--------CGGGEEEEEEETTEEEECCTTSBGGGSSCCCS
T ss_pred CeeEEEEEeCCc-eE-EEEeCCCCcHHHHHHHHHHHhCCC--------CCccceEEEEeCCcCeeCCCccCHHHcCCCCC
Confidence 468899999999 65 59999999999999999988 33 133333433 332 5788888887654433
Q ss_pred CCCCceEEEEEEec
Q 034110 79 EVPGGVIIMHVVVQ 92 (103)
Q Consensus 79 ~~~~~~~t~hlv~~ 92 (103)
.+..+++-++
T Consensus 91 ----~~~~l~fr~k 100 (314)
T 1h4r_A 91 ----EPVTFHFLAK 100 (314)
T ss_dssp ----SSEEEEEEES
T ss_pred ----CCEEEEEEEE
Confidence 2355666555
No 156
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=43.69 E-value=60 Score=20.56 Aligned_cols=24 Identities=13% Similarity=0.007 Sum_probs=19.0
Q ss_pred eEEeC---CcchHHHHHHHHHhhCCCC
Q 034110 21 PFRYS---SASTVDMLKQRIVSDWPKG 44 (103)
Q Consensus 21 ~~~v~---~~~tV~~lK~~i~~~~p~~ 44 (103)
.++++ ...||.+|-+.|.+.+|..
T Consensus 33 ~vel~~~~~~~TV~~Ll~~L~~~~~~~ 59 (114)
T 1wgk_A 33 QVALPGQEEPWDIRNLLVWIKKNLLKE 59 (114)
T ss_dssp EEEECCCSSCCBHHHHHHHHTTTTCCS
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHccch
Confidence 46776 3369999999999998855
No 157
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=42.12 E-value=33 Score=19.12 Aligned_cols=51 Identities=10% Similarity=0.165 Sum_probs=33.8
Q ss_pred eCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 13 LYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 13 ~~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
..+|. ++++ +..||.+|.+.+. ++ .....+..+|+++..+ .-.+..+++||
T Consensus 3 ~vNg~---~~~~-~~~tv~~ll~~l~--~~---------~~~v~vavN~~~v~~~-~~~~~~L~dgD 53 (64)
T 2cu3_A 3 WLNGE---PRPL-EGKTLKEVLEEMG--VE---------LKGVAVLLNEEAFLGL-EVPDRPLRDGD 53 (64)
T ss_dssp EETTE---EECC-TTCCHHHHHHHHT--BC---------GGGEEEEETTEEEEGG-GCCCCCCCTTC
T ss_pred EECCE---EEEc-CCCcHHHHHHHcC--CC---------CCcEEEEECCEECCcc-ccCCcCCCCCC
Confidence 35673 4567 7789999988874 33 6677788899888432 12234577885
No 158
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=40.82 E-value=94 Score=21.99 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=48.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEEe---cC--eecCCCCcccccCCCCCC
Q 034110 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS---SG--KILENNKTVGQCKIPYGE 79 (103)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI~---~G--k~L~D~~tL~~~~i~~g~ 79 (103)
+.+++.+.|| .+ .+.+++++|+.+|=+.|.+. +. +.+.-=|.| .| ..|+.++.+.+..+..+
T Consensus 2 i~~~V~l~d~-~~-~~~v~~~tt~~el~~~v~~~l~L~--------e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~- 70 (294)
T 1ef1_A 2 ISVRVTTMDA-EL-EFAIQPNTTGKQLFDQVVKTIGLR--------EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKE- 70 (294)
T ss_dssp EEEEEEETTE-EE-EEEECTTCBHHHHHHHHHHHHTCC--------CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCC-
T ss_pred EEEEEEECCc-eE-EEEECCCCcHHHHHHHHHHHcCCC--------CcceeEEEEECCCCceeecccccCHHhhccCCC-
Confidence 6789999999 54 59999999999999999988 33 133333433 23 25777788877654433
Q ss_pred CCCceEEEEEEec
Q 034110 80 VPGGVIIMHVVVQ 92 (103)
Q Consensus 80 ~~~~~~t~hlv~~ 92 (103)
.+..+++-++
T Consensus 71 ---~~~~l~fr~k 80 (294)
T 1ef1_A 71 ---SPLLFKFRAK 80 (294)
T ss_dssp ---SSEEEEEEES
T ss_pred ---CCEEEEEEEE
Confidence 2356666555
No 159
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=40.27 E-value=39 Score=20.56 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=34.2
Q ss_pred CCCCeeeeEEeCCc-chHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 14 YDGSDIGPFRYSSA-STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 14 ~~g~~~~~~~v~~~-~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
++| -+++++.. .||.+|.+.+. ++ +..+.+..+|+++..+ ...+..+++||
T Consensus 25 vNG---e~~el~~~~~Tv~dLL~~L~--~~---------~~~vaVavNg~iV~~~-~~~~~~L~dGD 76 (87)
T 1tyg_B 25 LNG---KDVKWKKDTGTIQDLLASYQ--LE---------NKIVIVERNKEIIGKE-RYHEVELCDRD 76 (87)
T ss_dssp ETT---EEECCSSSCCBHHHHHHHTT--CT---------TSCCEEEETTEEECGG-GTTTSBCCSSS
T ss_pred ECC---EEEECCCCCCcHHHHHHHhC--CC---------CCCEEEEECCEECChh-hcCCcCCCCCC
Confidence 467 24677787 89999988764 33 5667788899988432 22234577886
No 160
>4eo0_A Attachment protein G3P; filamentuos phage, infection, pilus binding, gene-3-protein, receptor binding, N-pilus; 1.61A {Enterobacteria phage ike}
Probab=40.08 E-value=29 Score=22.11 Aligned_cols=25 Identities=16% Similarity=0.522 Sum_probs=19.1
Q ss_pred HHHHHHHhhCCCCCccCCCCCcceEEEecCeecC
Q 034110 32 MLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE 65 (103)
Q Consensus 32 ~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~ 65 (103)
++|-.++--|| -++.||+|.|-+.-
T Consensus 58 qik~t~~g~wp---------~s~frlv~~~~c~y 82 (115)
T 4eo0_A 58 QIKLTLSGTWP---------NSQFRLVTGDTCVY 82 (115)
T ss_dssp HHHHHHHHHCT---------TCCEEEEECSSCEE
T ss_pred hcccceecccC---------CceEEEEeCCceee
Confidence 45555555599 89999999998763
No 161
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=39.72 E-value=48 Score=24.44 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=29.7
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
..+.|+|-+.||+. ..+.|++++|+++|-+.+...
T Consensus 30 ~k~ivkv~~~D~ss-~~l~V~~~~TA~dv~~~L~~k 64 (281)
T 4gmv_A 30 KKLVIRVHMSDDSS-KTMMVDERQTVRQVLDNLMDK 64 (281)
T ss_dssp CEEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHHH
T ss_pred ccEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHHh
Confidence 45789999999954 479999999999999888776
No 162
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=39.09 E-value=54 Score=19.43 Aligned_cols=30 Identities=23% Similarity=0.107 Sum_probs=23.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
+|.+.+.+| + .+++..+.|+.++-..|...
T Consensus 7 ~i~v~tP~G-~--~~~lp~GaT~~D~A~~Ih~~ 36 (78)
T 3hvz_A 7 EVFVFTPKG-D--VISLPIGSTVIDFAYAIHSA 36 (78)
T ss_dssp EEEEECTTS-C--EEEEETTCBHHHHHHHHCHH
T ss_pred eEEEECCCC-C--EEEecCCCCHHHHHHHhhhh
Confidence 466677899 3 46899999999988777654
No 163
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=37.91 E-value=51 Score=20.76 Aligned_cols=24 Identities=25% Similarity=0.095 Sum_probs=21.6
Q ss_pred CeeeeEEeCCcchHHHHHHHHHhh
Q 034110 17 SDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 17 ~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
.++..+-++++.+-.+|..+|.++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~K 45 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSK 45 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHH
Confidence 367789999999999999999988
No 164
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=37.55 E-value=52 Score=25.92 Aligned_cols=35 Identities=9% Similarity=0.137 Sum_probs=30.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
..+.+++.+.||.. ..+.+++++|+.+|-+.|...
T Consensus 215 ~~~~~~V~l~dg~~-~~~~v~~~tt~~el~~~v~~~ 249 (555)
T 3au4_A 215 QEMTSTVYCHGGGS-CKITINSHTTAGEVVEKLIRG 249 (555)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHHH
T ss_pred CCcceEEEecCCCe-EEEEeCCCCcHHHHHHHHHHH
Confidence 35788999999955 478999999999999999998
No 165
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=36.83 E-value=29 Score=27.68 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=25.2
Q ss_pred eEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCcceEEE
Q 034110 21 PFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLI 58 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~--~p~~~e~~p~~~~~qrLI 58 (103)
.+.+-.++|+.+||+.|++. +| +++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~---------~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFP---------QDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSC---------GGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcC---------cccEEEE
Confidence 46778899999999999998 66 8999994
No 166
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=35.41 E-value=79 Score=19.56 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=42.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHh--hCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVS--DWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~--~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.|+|-|-+.+.-....+++.+++||.++=+.+.- .+| ++ +.+...+-.+|+....+ ..+.+||
T Consensus 14 ~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~p----eI--dl~~~~V~Vng~~v~~d-----~~L~dGD 78 (97)
T 2hj1_A 14 NIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFP----EI--DLSTNKIGIFSRPIKLT-----DVLKEGD 78 (97)
T ss_dssp EEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCT----TC--CTTTSEEEEEECSCCTT-----CBCCTTC
T ss_pred EEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCC----cc--cccccEEEEcCEECCCC-----ccCCCCC
Confidence 5777777777545667899999999987666542 243 11 14456787888888633 3466786
No 167
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=34.26 E-value=65 Score=23.34 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=28.6
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
...-|+|-+.||.. ..+.|++++|+++|-+.+.+.
T Consensus 7 ~~~ivkv~~~d~ss-~~l~V~~~mta~ev~~~l~~k 41 (256)
T 3hk0_A 7 AKQDVKVFSEDGTS-KVVEILADMTARDLCQLLVYK 41 (256)
T ss_dssp -CEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHCC
T ss_pred CceEEEEEecCCcE-EEEEECCCCCHHHHHHHHHHh
Confidence 34568888899954 479999999999999988876
No 168
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=31.95 E-value=61 Score=19.57 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=20.5
Q ss_pred CCeeeeEEeC--CcchHHHHHHHHHhhCCC
Q 034110 16 GSDIGPFRYS--SASTVDMLKQRIVSDWPK 43 (103)
Q Consensus 16 g~~~~~~~v~--~~~tV~~lK~~i~~~~p~ 43 (103)
|..-..+++. +..||++|.+.+.+++|.
T Consensus 18 g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~ 47 (99)
T 2qjl_A 18 KQRVHKIKMDKEDPVTVGDLIDHIVSTMIN 47 (99)
T ss_dssp TCCEEEEEECSCSCCBHHHHHHHHHHHTCS
T ss_pred CCcEEEEecCCCCCCcHHHHHHHHHHHCch
Confidence 4333345555 678999999999999874
No 169
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=31.92 E-value=73 Score=18.05 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=31.3
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.+++ ...||.+|.+.+... | ++... .....+.-+|+...+. +..+++||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~-~-~l~~~---l~~~~vavN~~~v~~~----~~~l~~gD 63 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEK-E-GLKEW---LGVCAIALNDHLIDNL----NTPLKDGD 63 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTC-T-TTTTT---TTTCEEEESSSEECCT----TCCCCTTC
T ss_pred EEee-CCCcHHHHHHHHHHC-c-CHHHH---hhccEEEECCEEcCCC----CcCCCCCC
Confidence 3566 567999999999875 3 11111 2556777788875432 34577785
No 170
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=31.17 E-value=81 Score=20.83 Aligned_cols=57 Identities=14% Similarity=0.218 Sum_probs=33.9
Q ss_pred eEEeCC----cchHHHHHHHHHhh--CCCCCccCCCC-CcceEEEecCeec-CCCCcccccCCCCCCC
Q 034110 21 PFRYSS----ASTVDMLKQRIVSD--WPKGKTIVPKA-VTEIKLISSGKIL-ENNKTVGQCKIPYGEV 80 (103)
Q Consensus 21 ~~~v~~----~~tV~~lK~~i~~~--~p~~~e~~p~~-~~~qrLI~~Gk~L-~D~~tL~~~~i~~g~~ 80 (103)
.+.+++ .+|..+|=+.|..+ ++. ++.-. .+.+||||-=-+= .-+++|+++|+..|.|
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~---eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsf 73 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ---DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSI 73 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS---SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC---cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcE
Confidence 355654 35777776667655 431 22100 2357787765433 2248999999999865
No 171
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=30.92 E-value=74 Score=26.07 Aligned_cols=36 Identities=19% Similarity=0.222 Sum_probs=31.2
Q ss_pred ceEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 034110 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (103)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~~ 41 (103)
..+.+++.+.||.. ..+.+++.+|+.+|-+.|...+
T Consensus 262 ~~i~~~V~llDgt~-~~~~vds~Tt~~ell~~V~~~L 297 (655)
T 3pvl_A 262 KPIMLPVTFMDGTT-KTLLTDSATTARELCNALADKI 297 (655)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHHHT
T ss_pred CceEEEEEecCCce-EEEEEccCCcHHHHHHHHHHHc
Confidence 35788999999954 5799999999999999999983
No 172
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=30.52 E-value=80 Score=22.00 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=28.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 034110 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~tV~~lK~~i~~~ 40 (103)
.+.|+|-..|| ....+.|++++|+.+|-+.|...
T Consensus 34 k~~v~v~~~d~-~~k~i~v~~~~ta~ev~~~L~~k 67 (291)
T 3tca_A 34 KLVVKVHMDDS-STKSLMVDERQLARDVLDNLFEK 67 (291)
T ss_dssp EEEEEEECTTS-CEEEEEEETTCBHHHHHHHHHHH
T ss_pred ceEEEEEcCCC-ceEEEEeCCCCcHHHHHHHHHHH
Confidence 45677777888 44578999999999999998887
No 173
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=30.37 E-value=83 Score=18.26 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=23.3
Q ss_pred CCceEEEEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhh
Q 034110 3 DEELIDIKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSD 40 (103)
Q Consensus 3 ~~~~v~l~~~~~~g~~~~~~~v~~-~~tV~~lK~~i~~~ 40 (103)
..+...+++.+.+|.. .++.. .+|+.++-..|...
T Consensus 6 ~~~~~~i~I~lpdG~~---~~~~~~~~T~~dia~~i~~~ 41 (88)
T 1wwt_A 6 SGDSKPIKVTLPDGKQ---VDAESWKTTPYQIACGISQG 41 (88)
T ss_dssp CCSCCEEEEECTTSCE---EEEETTTCCHHHHHHHSSTT
T ss_pred cCCCCCEEEEECCCCE---EEcccCCCCHHHHHHHhhhc
Confidence 3345667888889842 35555 68898887776544
No 174
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=29.94 E-value=74 Score=20.67 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=27.6
Q ss_pred CcceEEEecCeecCCCCcccccCCCCCCCCCceEEEEEE
Q 034110 52 VTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (103)
Q Consensus 52 ~~~qrLI~~Gk~L~D~~tL~~~~i~~g~~~~~~~t~hlv 90 (103)
|--+||.|-|++.+|+..=++|.+..|. .++++-
T Consensus 60 PYyLRL~lP~~vved~~~~A~YD~d~g~-----~~v~lp 93 (115)
T 3eud_A 60 PYYLRLRFPHELIDDERSTAQYDSKDEC-----INVKVA 93 (115)
T ss_dssp TEEEEEECSSCEECSTTCEEEEETTTTE-----EEEEEE
T ss_pred CeEEEEecCcceecCCCcceEEeCCCcE-----EEEEEc
Confidence 8889999999999999877788888772 456553
No 175
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=29.51 E-value=85 Score=18.08 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=33.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccC--CCC---CcceEEEecCeecCCCCcccccCCCCCC
Q 034110 21 PFRYSSASTVDMLKQRIVSDWPKGKTIV--PKA---VTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 21 ~~~v~~~~tV~~lK~~i~~~~p~~~e~~--p~~---~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
.++++...||.+|.+.+...+| ++... -.. ...+.+..+|+......- .+..+++||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p-~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD 79 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYG-SEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDD 79 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSC-HHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTC
T ss_pred EEEcCCCCcHHHHHHHHHHHCc-chhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCC
Confidence 3567777899999999998865 11110 000 145677888887742111 133577784
No 176
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=27.25 E-value=1.1e+02 Score=18.71 Aligned_cols=60 Identities=12% Similarity=0.150 Sum_probs=40.4
Q ss_pred CceEEEEEEeCCCCee---eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeec-CCCCcccc
Q 034110 4 EELIDIKFRLYDGSDI---GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQ 72 (103)
Q Consensus 4 ~~~v~l~~~~~~g~~~---~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L-~D~~tL~~ 72 (103)
.+.|.|||+-.+.-.+ ..+.|+.+.|++++-..|..++- .+.+=|.-+..++ .-++++++
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~---------l~alFlyVNn~f~Ps~d~~~~~ 69 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLK---------MDHVYCYINNSFAPSPQQNIGE 69 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHT---------CSCCEEEETTTBCCCTTSBHHH
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhC---------CceEEEEECCccCCCcccHHHH
Confidence 3578899987655111 13689999999999999999854 4455554466555 44667764
No 177
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=27.22 E-value=54 Score=22.09 Aligned_cols=55 Identities=22% Similarity=0.306 Sum_probs=34.1
Q ss_pred CcchHHHHHHHHHhhCCCCC---c------cCCC------CCcceEEEecCeec-CCCCcccccCCCCCCC
Q 034110 26 SASTVDMLKQRIVSDWPKGK---T------IVPK------AVTEIKLISSGKIL-ENNKTVGQCKIPYGEV 80 (103)
Q Consensus 26 ~~~tV~~lK~~i~~~~p~~~---e------~~p~------~~~~qrLI~~Gk~L-~D~~tL~~~~i~~g~~ 80 (103)
.++|..+|-..|.+..|..- . .-|. -..++=-++.|+-- +|++||.+++..-||+
T Consensus 62 ~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp TTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred CCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 67889999998888866310 0 0000 01122224445543 6889999999999975
No 178
>2vq5_A S-norcoclaurine synthase; lyase, S- norcoclaurine biosynthesis, dopamine, hydroxybenzaldehyde; HET: MSE LDP HBA; 2.09A {Thalictrum flavum} PDB: 2vne_A*
Probab=24.46 E-value=27 Score=24.47 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=10.2
Q ss_pred CcceEEEecCeecCCCCccc
Q 034110 52 VTEIKLISSGKILENNKTVG 71 (103)
Q Consensus 52 ~~~qrLI~~Gk~L~D~~tL~ 71 (103)
.+.||||+.|+.+.-.++|-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ 21 (201)
T 2vq5_A 2 TGSQKLILTGRPFLHHQGII 21 (201)
T ss_dssp --CCEEEECCC------CTT
T ss_pred CccceeeecCCCCCChhhhh
Confidence 35799999999886665554
No 179
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=21.91 E-value=77 Score=23.05 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=24.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCC--cchHHHHHHH
Q 034110 6 LIDIKFRLYDGSDIGPFRYSS--ASTVDMLKQR 36 (103)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~--~~tV~~lK~~ 36 (103)
-+.|+|-+.||.. ..++|+. ++|+.+|-+.
T Consensus 5 ~~~i~V~l~dg~~-~~~~i~~~~~tt~~el~e~ 36 (322)
T 4dxa_B 5 FEKVRIYRMDGSY-RSVELKHGNNTTVQQIMEG 36 (322)
T ss_dssp CCEEEEECTTSCE-EEEECTTGGGCCHHHHHTT
T ss_pred ceEEEEEEECCcE-EEEEEcCCCCCcHHHHHHH
Confidence 4678999999955 5799999 9999999544
No 180
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=21.82 E-value=63 Score=19.05 Aligned_cols=56 Identities=7% Similarity=0.068 Sum_probs=32.5
Q ss_pred EEeCCcchHHHHHHHHHhhCCCCCccCCC-----C-CcceEEEecCeecCCCCcccccCCCCCC
Q 034110 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPK-----A-VTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 22 ~~v~~~~tV~~lK~~i~~~~p~~~e~~p~-----~-~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
++. +..||.+|.+.+.+++|.-.+.+-. . .....+.-+|+...+..-+ +.-+.+||
T Consensus 21 ~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gD 82 (93)
T 3dwg_C 21 VSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGD 82 (93)
T ss_dssp EEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTC
T ss_pred Eec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCC
Confidence 554 4579999999999988721111100 0 1246777788876542222 34577784
No 181
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=21.24 E-value=1.3e+02 Score=17.30 Aligned_cols=50 Identities=8% Similarity=0.129 Sum_probs=31.5
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcceEEEecCeecCCCCcccccCCCCCC
Q 034110 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (103)
Q Consensus 14 ~~g~~~~~~~v~~~~tV~~lK~~i~~~~p~~~e~~p~~~~~qrLI~~Gk~L~D~~tL~~~~i~~g~ 79 (103)
++|. +.++ +..||.+|-+.+. ++ +..+-+-.+|.++.-+ ...+..+++||
T Consensus 5 vNG~---~~e~-~~~Tl~~LL~~l~--~~---------~~~vAV~vNg~iVpr~-~~~~~~L~dGD 54 (73)
T 2kl0_A 5 INGE---QREV-QSASVAALMTELD--CT---------GGHFAVALNYDVVPRG-KWDETPVTAGD 54 (73)
T ss_dssp ETTE---EECC-CCSBHHHHHHHTT--CC---------SSSCEEEESSSEECHH-HHTTCBCCTTC
T ss_pred ECCE---EEEc-CCCcHHHHHHHcC--CC---------CCcEEEEECCEECChH-HcCcccCCCCC
Confidence 4672 4567 6788888866543 44 6666788899887422 22334577885
Done!