BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034114
         (103 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DO8|A Chain A, The Crystal Structure Of The Protein With Unknown
          Function From Archaeoglobus Fulgidus
 pdb|3DO8|B Chain B, The Crystal Structure Of The Protein With Unknown
          Function From Archaeoglobus Fulgidus
          Length = 148

 Score = 36.2 bits (82), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
          V LGGTF+ LH+GH+  +  + +L    I +GV    M   +  + L  P   R  NV+ 
Sbjct: 3  VALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVL--PFAIRAENVKR 60

Query: 84 YI 85
          Y+
Sbjct: 61 YV 62


>pdb|3NV7|A Chain A, Crystal Structure Of H.Pylori Phosphopantetheine
          Adenylyltransferase Mutant I4vN76Y
          Length = 157

 Score = 29.6 bits (65), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 25 VLGGTFDRLHDGHRLFLKASAELARDRIVVGV----CDGPMLTNKQFAELIQPVDERMRN 80
          +  GTFD + +GH   +  S+EL  ++++V V       PM +  +  ++IQ   +  +N
Sbjct: 6  IYPGTFDPVTNGHIDIIHRSSELF-EKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFKN 64

Query: 81 VEA 83
          VE 
Sbjct: 65 VEC 67


>pdb|3OTW|A Chain A, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
 pdb|3OTW|B Chain B, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
 pdb|3OTW|C Chain C, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
 pdb|3OTW|D Chain D, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
 pdb|3OTW|E Chain E, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
 pdb|3OTW|F Chain F, Structural And Functional Studies Of Helicobacter Pylori
          Wild-Type And Mutated Proteins Phosphopantetheine
          Adenylyltransferase
          Length = 163

 Score = 29.3 bits (64), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 5/63 (7%)

Query: 25 VLGGTFDRLHDGHRLFLKASAELARDRIVVGV----CDGPMLTNKQFAELIQPVDERMRN 80
          +  GTFD + +GH   +  S+EL  ++++V V       PM +  +  ++IQ   +  +N
Sbjct: 12 IYPGTFDPVTNGHIDIIHRSSELF-EKLIVAVAHSSAKNPMFSLDERLKMIQLATKSFKN 70

Query: 81 VEA 83
          VE 
Sbjct: 71 VEC 73


>pdb|3GLV|A Chain A, Crystal Structure Of The Lipopolysaccharide Core
          Biosynthesis Protein From Thermoplasma Volcanium Gss1
 pdb|3GLV|B Chain B, Crystal Structure Of The Lipopolysaccharide Core
          Biosynthesis Protein From Thermoplasma Volcanium Gss1
          Length = 143

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN 64
          V+  G FD LH GH  +LK S +L  + +VV   D     N
Sbjct: 5  VMATGVFDILHLGHIHYLKESKKLGDELVVVVARDSTARNN 45


>pdb|3ND5|A Chain A, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND5|B Chain B, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND5|C Chain C, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND5|D Chain D, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND5|E Chain E, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND5|F Chain F, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) From Enterococcus Faecalis
 pdb|3ND6|A Chain A, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND6|B Chain B, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND6|C Chain C, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND6|D Chain D, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND6|E Chain E, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND6|F Chain F, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase (Ppat) In Complex With Atp From
          Enterococcus Faecalis
 pdb|3ND7|A Chain A, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
 pdb|3ND7|B Chain B, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
 pdb|3ND7|C Chain C, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
 pdb|3ND7|D Chain D, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
 pdb|3ND7|E Chain E, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
 pdb|3ND7|F Chain F, Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Enterococcus Faecalis In The
          Ligand-Unbound State And In Complex With Atp And
          Pantetheine
          Length = 171

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 25 VLGGTFDRLHDGHRLFLKASAELARDRIVVGV----CDGPMLTNKQFAELIQPVDERMRN 80
          +  G+FD + +GH   ++ SA+L  D +++GV        + T ++   LI+   + M N
Sbjct: 6  LFPGSFDPMTNGHLNLIERSAKLF-DEVIIGVFINTSKQTLFTPEEKKYLIEEATKEMPN 64

Query: 81 V 81
          V
Sbjct: 65 V 65


>pdb|3QE6|A Chain A, Mouse Pacsin 3 F-Bar Domain Structure
 pdb|3QE6|B Chain B, Mouse Pacsin 3 F-Bar Domain Structure
          Length = 304

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 10/35 (28%)

Query: 15 ISPDNSYGAVVLGGTF----------DRLHDGHRL 39
          ++P+   G  VLGG+F           R+ DGHRL
Sbjct: 1  MAPEEDAGGEVLGGSFWEAGNYRRTVQRVEDGHRL 35


>pdb|1COZ|A Chain A, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
          Bacillus Subtilis
 pdb|1COZ|B Chain B, Ctp:glycerol-3-Phosphate Cytidylyltransferase From
          Bacillus Subtilis
 pdb|1N1D|A Chain A, Glycerol-3-phosphate Cytidylyltransferase Complexed With
          Cdp-glycerol
 pdb|1N1D|B Chain B, Glycerol-3-phosphate Cytidylyltransferase Complexed With
          Cdp-glycerol
 pdb|1N1D|C Chain C, Glycerol-3-phosphate Cytidylyltransferase Complexed With
          Cdp-glycerol
 pdb|1N1D|D Chain D, Glycerol-3-phosphate Cytidylyltransferase Complexed With
          Cdp-glycerol
          Length = 129

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQ 66
          V+  GTFD LH GH   L+ + +L  D +VV +        KQ
Sbjct: 4  VITYGTFDLLHWGHIKLLERAKQLG-DYLVVAISTDEFNLQKQ 45


>pdb|2I1L|A Chain A, Crystal Structure Of The C2 Form Of Fad Synthetase From
          Thermotoga Maritima
 pdb|2I1L|B Chain B, Crystal Structure Of The C2 Form Of Fad Synthetase From
          Thermotoga Maritima
          Length = 293

 Score = 26.9 bits (58), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 24 VVLGGTFDRLHDGHRLFLKASAELA----RDRIVVGVCDGPMLTNKQFAELIQPVDERMR 79
          VV  G FD +H GH+  L+   E+A     D ++  +   P      F  L+  V+ R+ 
Sbjct: 2  VVSIGVFDGVHIGHQKVLRTXKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLXTVESRVE 61

Query: 80 NVEAYIKVL 88
           +  Y + +
Sbjct: 62 XLSRYARTV 70


>pdb|3SYV|A Chain A, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|B Chain B, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|C Chain C, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|D Chain D, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|E Chain E, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|F Chain F, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|G Chain G, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
 pdb|3SYV|H Chain H, Crystal Structure Of Mpacsin 3 F-Bar Domain Mutant
          Length = 347

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 10/35 (28%)

Query: 15 ISPDNSYGAVVLGGTF----------DRLHDGHRL 39
          ++P+   G  VLGG+F           R+ DGHRL
Sbjct: 7  MAPEEDAGGEVLGGSFWEAGNYRRTVQRVEDGHRL 41


>pdb|3M3W|A Chain A, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
 pdb|3M3W|B Chain B, Crystal Strcuture Of Mouse Pacsin3 Bar Domain Mutant
          Length = 320

 Score = 26.9 bits (58), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 10/35 (28%)

Query: 15 ISPDNSYGAVVLGGTF----------DRLHDGHRL 39
          ++P+   G  VLGG+F           R+ DGHRL
Sbjct: 1  MAPEEDAGGEVLGGSFWEAGNYRRTVQRVEDGHRL 35


>pdb|2X0K|A Chain A, Crystal Structure Of Modular Fad Synthetase From
          Corynebacterium Ammoniagenes
 pdb|2X0K|B Chain B, Crystal Structure Of Modular Fad Synthetase From
          Corynebacterium Ammoniagenes
          Length = 338

 Score = 26.9 bits (58), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELARD 50
          P +   + V  G FD +H GH+  + A+ E AR+
Sbjct: 11 PKDLDNSAVTIGVFDGVHRGHQKLINATVEKARE 44


>pdb|3ZUG|A Chain A, E268d Mutant Of Fad Synthetase From Corynebacterium
          Ammoniagenes
 pdb|3ZUG|B Chain B, E268d Mutant Of Fad Synthetase From Corynebacterium
          Ammoniagenes
          Length = 338

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELARD 50
          P +   + V  G FD +H GH+  + A+ E AR+
Sbjct: 11 PKDLDNSAVTIGVFDGVHRGHQKLINATVEKARE 44


>pdb|1OD6|A Chain A, The Crystal Structure Of Phosphopantetheine
          Adenylyltransferase From Thermus Thermophilus In
          Complex With 4'-Phosphopantetheine
          Length = 160

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 7/66 (10%)

Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP------MLTNKQFAELIQPVDER 77
          VV  G+FD L +GH   ++ ++ L  +++ V V + P      + + ++   +I+     
Sbjct: 3  VVYPGSFDPLTNGHLDVIQRASRLF-EKVTVAVLENPSKRGQYLFSAEERLAIIREATAH 61

Query: 78 MRNVEA 83
          + NVEA
Sbjct: 62 LANVEA 67


>pdb|3TKA|A Chain A, Crystal Structure And Solution Saxs Of Methyltransferase
          Rsmh From E.Coli
          Length = 347

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 7/46 (15%)

Query: 5  ILDESVVNSNISPDNSYGAVVLGGTFDRLHDGH-RLFLKASAELAR 49
          +LDE+V   NI PD  Y    + GTF R   GH RL L    E  R
Sbjct: 45 LLDEAVNGLNIRPDGIY----IDGTFGR--GGHSRLILSQLGEEGR 84


>pdb|1KAM|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
          Mononucleotide Adenylyl Transferase
 pdb|1KAM|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
          Mononucleotide Adenylyl Transferase
 pdb|1KAM|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
          Mononucleotide Adenylyl Transferase
 pdb|1KAM|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
          Mononucleotide Adenylyl Transferase
 pdb|1KAQ|A Chain A, Structure Of Bacillus Subtilis Nicotinic Acid
          Mononucleotide Adenylyl Transferase
 pdb|1KAQ|B Chain B, Structure Of Bacillus Subtilis Nicotinic Acid
          Mononucleotide Adenylyl Transferase
 pdb|1KAQ|C Chain C, Structure Of Bacillus Subtilis Nicotinic Acid
          Mononucleotide Adenylyl Transferase
 pdb|1KAQ|D Chain D, Structure Of Bacillus Subtilis Nicotinic Acid
          Mononucleotide Adenylyl Transferase
 pdb|1KAQ|E Chain E, Structure Of Bacillus Subtilis Nicotinic Acid
          Mononucleotide Adenylyl Transferase
 pdb|1KAQ|F Chain F, Structure Of Bacillus Subtilis Nicotinic Acid
          Mononucleotide Adenylyl Transferase
          Length = 194

 Score = 26.2 bits (56), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 17 PDNSYGAVVLGGTFDRLHDGHRL 39
          P  S    + GGTFD  H+GH L
Sbjct: 3  PGGSKKIGIFGGTFDPPHNGHLL 25


>pdb|1MRZ|A Chain A, Crystal Structure Of A Flavin Binding Protein From
          Thermotoga Maritima, Tm379
 pdb|1MRZ|B Chain B, Crystal Structure Of A Flavin Binding Protein From
          Thermotoga Maritima, Tm379
 pdb|1T6X|A Chain A, Crystal Structure Of Adp Bound Tm379
 pdb|1T6X|B Chain B, Crystal Structure Of Adp Bound Tm379
 pdb|1T6Y|A Chain A, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
 pdb|1T6Y|B Chain B, Crystal Structure Of Adp, Amp, And Fmn Bound Tm379
 pdb|1T6Z|A Chain A, Crystal Structure Of Riboflavin Bound Tm379
 pdb|1T6Z|B Chain B, Crystal Structure Of Riboflavin Bound Tm379
 pdb|1S4M|A Chain A, Crystal Structure Of Flavin Binding To Fad Synthetase
          From Thermotoga Maritina
 pdb|1S4M|B Chain B, Crystal Structure Of Flavin Binding To Fad Synthetase
          From Thermotoga Maritina
          Length = 293

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 24 VVLGGTFDRLHDGHRLFLKASAELA----RDRIVVGVCDGPMLTNKQFAELIQPVDERMR 79
          VV  G FD +H GH+  L+   E+A     D ++  +   P      F  L+  V+ R+ 
Sbjct: 2  VVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPDFPGLLMTVESRVE 61

Query: 80 NVEAYIKVL 88
           +  Y + +
Sbjct: 62 MLSRYARTV 70


>pdb|3GYD|A Chain A, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
           (Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
           A Resolution
 pdb|3GYD|B Chain B, Crystal Structure Of A Cyclic Nucleotide-Binding Domain
           (Mfla_1926) From Methylobacillus Flagellatus Kt At 1.79
           A Resolution
          Length = 187

 Score = 25.8 bits (55), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 45  AELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLF 96
           A L+RD +   + + P L NK    L+Q +  R R  E+Y ++L K +  L 
Sbjct: 138 AVLSRDALYQLLANXPKLGNKVLIRLLQLLTARFR--ESYDRILPKTLGELI 187


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,031,583
Number of Sequences: 62578
Number of extensions: 102784
Number of successful extensions: 302
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 20
length of query: 103
length of database: 14,973,337
effective HSP length: 68
effective length of query: 35
effective length of database: 10,718,033
effective search space: 375131155
effective search space used: 375131155
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)