BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034114
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ZPV8|COAD_ARATH Phosphopantetheine adenylyltransferase OS=Arabidopsis thaliana
GN=COAD PE=1 SV=1
Length = 176
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 72/77 (93%)
Query: 12 NSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELI 71
+S +SP NS+GAVVLGGTFDRLHDGHR+FLKA+AELARDRIVVGVCDGPMLT KQF+++I
Sbjct: 6 DSKMSPANSFGAVVLGGTFDRLHDGHRMFLKAAAELARDRIVVGVCDGPMLTKKQFSDMI 65
Query: 72 QPVDERMRNVEAYIKVL 88
QP++ERMRNVE Y+K +
Sbjct: 66 QPIEERMRNVETYVKSI 82
>sp|P53332|COAD_YEAST Phosphopantetheine adenylyltransferase OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CAB4 PE=1 SV=1
Length = 305
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 44/70 (62%)
Query: 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERM 78
N + LGGTFD +HDGH++ L S + R++ G+ +L NK++ ELI+P D R
Sbjct: 140 NKFHVTALGGTFDHIHDGHKILLSVSTFITSQRLICGITCDELLQNKKYKELIEPYDTRC 199
Query: 79 RNVEAYIKVL 88
R+V +IK+L
Sbjct: 200 RHVHQFIKLL 209
>sp|Q9DBL7|COASY_MOUSE Bifunctional coenzyme A synthase OS=Mus musculus GN=Coasy PE=1 SV=2
Length = 563
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 10 VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAE 69
V S P Y +GGTFDRLH+ H++ L + LA++++VVGV D +L +K E
Sbjct: 179 VARSPRQPVRGYHRGAVGGTFDRLHNAHKVLLSVACVLAQEQLVVGVADKDLLKSKLLPE 238
Query: 70 LIQPVDERMRNVEAYI 85
L+QP ER+ ++ ++
Sbjct: 239 LLQPYAERVEHLTEFL 254
>sp|Q13057|COASY_HUMAN Bifunctional coenzyme A synthase OS=Homo sapiens GN=COASY PE=1 SV=4
Length = 564
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 10 VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAE 69
V S P Y +GGTFDRLH+ H++ L + LA++++VVGV D +L +K E
Sbjct: 180 VAGSPKQPVRGYYRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPE 239
Query: 70 LIQPVDERMRNVEAYI 85
L+QP ER+ ++ ++
Sbjct: 240 LLQPYTERVEHLSEFL 255
>sp|Q8MIR4|COASY_PIG Bifunctional coenzyme A synthase OS=Sus scrofa GN=COASY PE=1 SV=1
Length = 562
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 10 VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAE 69
V S P + +GGTFDRLH+ H++ L + LA++++VVGV D +L +K E
Sbjct: 179 VARSAKQPVRGHQRGAVGGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPE 238
Query: 70 LIQPVDERMRNVEAYI 85
L+QP ER+ ++ ++
Sbjct: 239 LLQPYTERVEHLSEFL 254
>sp|Q5JHE8|COAD_PYRKO Phosphopantetheine adenylyltransferase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=coaD PE=3 SV=1
Length = 165
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERM 78
Y VV+GGTFDRLH GH+ L+ + E+ + + +G+ M+ NK +AE I P + R+
Sbjct: 3 KKYRKVVVGGTFDRLHLGHKALLRKAFEVGKI-VYIGLTSDEMVRNKPYAERILPYEHRL 61
Query: 79 RNVEAYIKVLG 89
+++ +I+V G
Sbjct: 62 KDLLKFIEVNG 72
>sp|C5A3G3|COAD_THEGJ Phosphopantetheine adenylyltransferase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=coaD PE=3 SV=1
Length = 159
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERM 78
Y VV+GGTFDRLH GH+ L+ + E+ R + VG+ M+ NK +AE I P + R+
Sbjct: 3 KPYRKVVVGGTFDRLHLGHKALLRKAFEVGR-YVYVGLTSDEMIRNKPYAEKILPYELRL 61
Query: 79 RNVEAYIKVLG 89
++ + +V G
Sbjct: 62 MDLLKFFEVNG 72
>sp|Q9UYT0|COAD_PYRAB Phosphopantetheine adenylyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=coaD PE=1 SV=3
Length = 157
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMR 79
+ VV+GGTFDRLH GH+ L+ + E+ + + +G+ M+ NK +AE I P + R++
Sbjct: 3 KFKKVVVGGTFDRLHLGHKALLRKAFEVGKI-VYIGLTSDDMVKNKPYAEKILPYERRLK 61
Query: 80 NVEAYIKV 87
++ +++V
Sbjct: 62 DLIEFLEV 69
>sp|O58358|COAD_PYRHO Phosphopantetheine adenylyltransferase OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC
100139 / OT-3) GN=coaD PE=3 SV=2
Length = 158
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRN 80
+ VV+GGTFDRLH GH+ L+ + E+ + + +G+ M+ K +AE I P + R+++
Sbjct: 4 FKKVVVGGTFDRLHLGHKALLRKAFEVGKI-VYIGLTSDEMVKEKPYAEKILPYERRLKD 62
Query: 81 VEAYIKV 87
+ +++V
Sbjct: 63 LIEFLEV 69
>sp|Q8TGY4|COAD_METKA Phosphopantetheine adenylyltransferase OS=Methanopyrus kandleri
(strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938)
GN=coaD PE=3 SV=1
Length = 157
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 15 ISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPV 74
++P + VV+GGTFDRLH GH+ L + EL DR+V+GV + ++ + ++P
Sbjct: 1 MTPLARFRKVVVGGTFDRLHLGHQRLLSVALELG-DRVVIGVTTDSFV-REEGKKGVEPF 58
Query: 75 DERMRNVEAYIKVLG 89
+ER+R V +++ G
Sbjct: 59 EERVRAVRRFVEEKG 73
>sp|Q8U1X0|COAD_PYRFU Phosphopantetheine adenylyltransferase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=coaD
PE=3 SV=1
Length = 160
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 27 GGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86
GGTFDRLH GH+ L+ + E+ + + +G+ M+ KQ++E I P ++R+ ++ +++
Sbjct: 11 GGTFDRLHLGHKALLRKAFEVG-EIVYIGLTSDEMIKEKQYSERILPYEKRLLDLIKFLE 69
Query: 87 V 87
V
Sbjct: 70 V 70
>sp|O27918|COAD_METTH Phosphopantetheine adenylyltransferase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=coaD PE=3 SV=2
Length = 164
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 11/80 (13%)
Query: 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFA----ELIQPVD 75
Y V +GGTFDR H GHR L + + + +++GV T+ +FA E I+P
Sbjct: 4 KYSLVAVGGTFDRFHKGHRRLLDEAFRVG-ETVMIGV------TSDEFAAAKGEGIEPCS 56
Query: 76 ERMRNVEAYIKVLGKWMHVL 95
RM+N+E Y++ HV+
Sbjct: 57 VRMKNLEEYLRDKDADYHVM 76
>sp|Q8ZY96|COAD_PYRAE Phosphopantetheine adenylyltransferase OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=coaD PE=3 SV=1
Length = 155
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVC-DGPMLTNKQFAELIQPVDERMRNVE 82
VVLGGTFD LH GH + L A+A L DRI++G+ D T KQ+ ++P R+ N+
Sbjct: 8 VVLGGTFDTLHSGH-VKLLATATLIGDRILIGLTSDSFASTYKQYK--VRPFSVRLANLR 64
Query: 83 AYIKVLGKWMHVLF 96
+ ++ V +
Sbjct: 65 NLMSLIAPEREVAY 78
>sp|Q10350|YDA8_SCHPO Uncharacterized protein C1F12.08 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1F12.08 PE=4 SV=2
Length = 316
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 26 LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85
+GGTFD LH GH++ L +A ++VGV +L K E ++ + +R V ++
Sbjct: 161 VGGTFDHLHVGHKVLLTLTAWFGVKEVIVGVSGDELLKKKVQKEFLENIQKRKEEVSNFL 220
>sp|Q97BQ0|COPP_THEVO Bifunctional phosphopantetheine adenylyltransferase/NTP
phosphatase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=coaD PE=3 SV=1
Length = 328
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 25 VLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAY 84
V+GGTF +LH GH+ L+ + E + ++ D + NK + + P ER RN+ Y
Sbjct: 4 VVGGTFSKLHKGHKALLEKAIETGNEIVIGLTSDEYVKRNKVYPAI--PYKERYRNLYNY 61
Query: 85 I 85
+
Sbjct: 62 M 62
>sp|Q493X3|HLDE_BLOPB Bifunctional protein HldE OS=Blochmannia pennsylvanicus (strain
BPEN) GN=hldE PE=3 SV=1
Length = 477
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 1 MKMAILDESVVNSNISPDNSYGA--VVLGGTFDRLHDGHRLFLKASAELARDRIVVGV-C 57
+ + ILDE + IS + G V+ G FD LH GH +L + +L DR++V V
Sbjct: 320 LPVGILDEKTLKQTISVVRNRGEKIVMTNGVFDILHSGHVSYLTNAKKLG-DRLIVAVNS 378
Query: 58 DGPMLTNKQFAELIQPVDERM 78
DG K I +++RM
Sbjct: 379 DGSTRRLKGKTRPINTLEQRM 399
>sp|Q5JHT4|RIBL_PYRKO FAD synthase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 /
JCM 12380 / KOD1) GN=ribL PE=3 SV=1
Length = 149
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDER 77
V++GG FD LH GH FLK + EL D +VV V + ++ E I P ++R
Sbjct: 10 VLVGGVFDILHVGHIHFLKQAKELG-DELVVIVAHDETVRMQKRREPINPAEDR 62
>sp|O28077|COAD_ARCFU Phosphopantetheine adenylyltransferase OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=coaD PE=1 SV=1
Length = 148
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
V LGGTF+ LH+GH+ + + +L I +GV M + + L P R NV+
Sbjct: 3 VALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVL--PFAIRAENVKR 60
Query: 84 YI 85
Y+
Sbjct: 61 YV 62
>sp|O58466|RIBL_PYRHO FAD synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=ribL PE=3
SV=1
Length = 148
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
VV+GG FD +H GH FLK + EL D ++V V + ++ I P ++R ++A
Sbjct: 9 VVVGGVFDIIHAGHVHFLKMAKELG-DELIVIVAHDETVKKRKGRPPINPAEDRAEVLKA 67
>sp|E3GWN9|RIBL_METFV FAD synthase OS=Methanothermus fervidus (strain ATCC 43054 / DSM
2088 / JCM 10308 / V24 S) GN=ribL PE=3 SV=1
Length = 145
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 14/63 (22%)
Query: 28 GTFDRLHDGHRLFLKASAEL-----------ARDRIVVGVCDGPMLTNKQFAELI---QP 73
GTFD +H GH +LK + EL ARD V P++ KQ E++ +P
Sbjct: 4 GTFDIIHPGHGFYLKKAKELGGKNSKLVVIVARDSTVRARKRKPVINEKQRLEVVKMLKP 63
Query: 74 VDE 76
VDE
Sbjct: 64 VDE 66
>sp|Q9UZ37|RIBL_PYRAB FAD synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ribL
PE=3 SV=1
Length = 148
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERM 78
N VV+GG FD LH GH FLK + EL D ++V V + ++ I P ++R
Sbjct: 4 NRRIRVVVGGVFDILHVGHIHFLKMAKELG-DELIVIVAHDETVKKRKGRPPINPAEDRA 62
Query: 79 RNVEA 83
+ A
Sbjct: 63 EVLRA 67
>sp|Q3IHX7|HLDE_PSEHT Bifunctional protein HldE OS=Pseudoalteromonas haloplanktis (strain
TAC 125) GN=hldE PE=3 SV=1
Length = 479
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAEL-IQPVDER 77
N V G FD LH GH +L A A+ DR+VVG+ + ++ + A+ I P+DER
Sbjct: 340 NGETIVFTNGCFDILHAGHVRYL-AQAKARGDRLVVGLNNDASISRLKGADRPINPLDER 398
Query: 78 MRNVEAYIKVLGKWMHVLFFGS 99
+ A V W V+ FGS
Sbjct: 399 AMVLSALSSV--DW--VIPFGS 416
>sp|C5A1S7|RIBL_THEGJ FAD synthase OS=Thermococcus gammatolerans (strain DSM 15229 /
JCM 11827 / EJ3) GN=ribL PE=3 SV=1
Length = 151
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
V++GG FD LH GH FLK + EL + +V+ D + NK+ I P ++R + A
Sbjct: 12 VLVGGVFDILHVGHVHFLKQAKELGDELVVIVAHDETVRRNKR-RNPINPAEDRAELLRA 70
Query: 84 YIKVLGKWMHVLFFGS 99
+++ ++ GS
Sbjct: 71 I-----RYVDEVYIGS 81
>sp|Q07Y78|HLDE_SHEFN Bifunctional protein HldE OS=Shewanella frigidimarina (strain NCIMB
400) GN=hldE PE=3 SV=1
Length = 476
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERM 78
V+ G FD LH GH +L+ + L DR++V V D +T K + PVD RM
Sbjct: 344 VMTNGCFDILHAGHVSYLQQAKALG-DRLIVAVNDDSSVTRLKGPGRPVNPVDRRM 398
>sp|A0B7A6|RIBL_METTP FAD synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT)
GN=ribL PE=3 SV=1
Length = 143
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
V+ GTFD LH GH L+L+ S L + +VV D + K + P D+R+R V A
Sbjct: 8 VMATGTFDILHPGHLLYLERSRALGDELVVVVARD---INVKHKPRPVVPEDQRLRMVSA 64
>sp|Q46A30|COAD_METBF Phosphopantetheine adenylyltransferase OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=coaD PE=3 SV=1
Length = 161
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARD-RIVVGVCDGPMLTNKQFAELIQPVDERMRNVE 82
V +GGTF HDGH ++ + E+A D ++ +G+ ML+ + + ++R +
Sbjct: 4 VAVGGTFQYFHDGHAKLIEKAFEIAEDGKVHIGLTSDEMLSK---SHSVDNYEKRRNWLL 60
Query: 83 AYIKVLG 89
YIK +G
Sbjct: 61 QYIKEMG 67
>sp|A4SGY4|NADD_PROVI Probable nicotinate-nucleotide adenylyltransferase
OS=Prosthecochloris vibrioformis (strain DSM 265)
GN=nadD PE=3 SV=1
Length = 193
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 25 VLGGTFDRLHDGH-RLFLKASAELARDRIVVGVCDGPMLTNKQFAE 69
VLGGTFD H+GH L L A L DR+++ V D P+ + ++
Sbjct: 5 VLGGTFDPPHNGHLALALFARELLCVDRLILSVSDNPLKQRRSASD 50
>sp|C7NTR1|RIBL_HALUD FAD synthase OS=Halorhabdus utahensis (strain DSM 12940 / JCM
11049 / AX-2) GN=ribL PE=3 SV=1
Length = 142
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 23 AVVLGGTFDRLHDGHRLFLKASAE--------LARDRIVVGVCDGPMLTNKQFAELI--- 71
VV GTFD LH GH +L+ +A LAR R V D P+L N+Q E++
Sbjct: 3 TVVAQGTFDLLHPGHLHYLREAAGMGDQLHVILAR-RENVTHKDPPILPNEQRREMVAAL 61
Query: 72 QPVDE 76
PVDE
Sbjct: 62 DPVDE 66
>sp|B6ELZ7|HLDE_ALISL Bifunctional protein HldE OS=Aliivibrio salmonicida (strain
LFI1238) GN=hldE PE=3 SV=1
Length = 476
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 14/83 (16%)
Query: 4 AILDESVVNSNISPDNSYG--AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM 61
I++E ++ S + G V+ G FD LH GH +L +AEL DR++V V
Sbjct: 321 GIINEELLISAVKQARERGEKVVMTNGCFDILHAGHVYYLNHAAELG-DRLIVAVN---- 375
Query: 62 LTNKQFAEL------IQPVDERM 78
TN+ L I P D RM
Sbjct: 376 -TNESVQRLKGPGRPINPTDRRM 397
>sp|Q3B146|NADD_PELLD Probable nicotinate-nucleotide adenylyltransferase OS=Pelodictyon
luteolum (strain DSM 273) GN=nadD PE=3 SV=1
Length = 194
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 24 VVLGGTFDRLHDGH-RLFLKASAELARDRIVVGVCDGPM 61
V GGTFD H+GH + L A L DRI++ V D P+
Sbjct: 4 AVFGGTFDPPHNGHLAMALFARELLPADRILISVSDNPL 42
>sp|Q8TK70|COAD_METAC Phosphopantetheine adenylyltransferase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=coaD PE=3 SV=1
Length = 156
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARD-RIVVGVCDGPML 62
V +GGTF LHDGH ++ + E+A D ++ +G+ ML
Sbjct: 4 VAVGGTFQYLHDGHARLIEKAFEIAGDGKVYIGLTSDEML 43
>sp|Q58436|COAD_METJA Phosphopantetheine adenylyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=coaD PE=3 SV=1
Length = 147
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
VV+GGTFD LH GH+ LK ++ L ++ +G+ K I + R+ N++
Sbjct: 3 VVVGGTFDILHRGHKELLKFASSLG--KLTIGITSDE-FAKKYKTHKINDLKTRIENLKK 59
Query: 84 YI 85
++
Sbjct: 60 FL 61
>sp|D5VUB0|RIBL_METIM FAD synthase OS=Methanocaldococcus infernus (strain DSM 11812 /
JCM 15783 / ME) GN=ribL PE=3 SV=1
Length = 145
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 12/65 (18%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCD---------GPMLTNKQ---FAELI 71
VV GTFD LH GH FLK + L + IV+ D P++ +Q E +
Sbjct: 4 VVAAGTFDILHPGHYEFLKFAKSLGDELIVIVARDKTVEKIKGRKPIIPEEQRRAMVEAL 63
Query: 72 QPVDE 76
+PVD+
Sbjct: 64 KPVDK 68
>sp|D9PX81|RIBL_METTM FAD synthase OS=Methanothermobacter marburgensis (strain DSM 2133
/ 14651 / NBRC 100331 / OCM 82 / Marburg) GN=ribL PE=3
SV=1
Length = 161
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 23 AVVLGGTFDRLHDGHRLFLKASAE-----------LARDRIVVGVCDGPMLTNKQFAE-- 69
V+ GTFD +H GH FL+ + + LARD V P++ KQ E
Sbjct: 13 TVMATGTFDIIHPGHGFFLEEAKKLGGENARLVVVLARDSTVRARKRTPIIGEKQRLEVV 72
Query: 70 -LIQPVDE 76
+++PVDE
Sbjct: 73 MMLKPVDE 80
>sp|A6UWK8|RIBL_META3 FAD synthase OS=Methanococcus aeolicus (strain Nankai-3 / ATCC
BAA-1280) GN=ribL PE=3 SV=1
Length = 156
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 18 DNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCD---------GPMLTNKQFA 68
D + V+ GTFD LH GH LK + L + IVV D P++ Q
Sbjct: 5 DKTKKIVLTAGTFDLLHPGHHNTLKYAKSLGDELIVVIARDETVKKIKGRKPVIPENQRR 64
Query: 69 ELIQ---PVDE 76
E+I+ PVD+
Sbjct: 65 EMIEAIKPVDK 75
>sp|A7MWN3|HLDE_VIBHB Bifunctional protein HldE OS=Vibrio harveyi (strain ATCC BAA-1116 /
BB120) GN=hldE PE=3 SV=1
Length = 476
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGV-CDGPMLTNKQFAELIQPVDERM 78
V+ G FD LH GH +L +AEL DR++V V D + K + P D RM
Sbjct: 343 VMTNGCFDILHAGHVSYLNHAAELG-DRLIVAVNTDESVKRLKGPGRPVNPTDRRM 397
>sp|Q87SJ9|HLDE_VIBPA Bifunctional protein HldE OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=hldE PE=3 SV=1
Length = 476
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGV-CDGPMLTNKQFAELIQPVDERM 78
V+ G FD LH GH +L +AEL DR++V V D + K + P D RM
Sbjct: 343 VMTNGCFDILHAGHVSYLNHAAELG-DRLIVAVNTDESVKRLKGPGRPVNPTDRRM 397
>sp|Q9HUG9|HLDE_PSEAE Bifunctional protein HldE OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=hldE PE=3
SV=1
Length = 474
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERM 78
G FD LH GH +L+ A DR++VGV D +T K I VD RM
Sbjct: 346 GCFDILHAGHVTYLE-QARAQGDRLIVGVNDDASVTRLKGVGRPINSVDRRM 396
>sp|Q02F21|HLDE_PSEAB Bifunctional protein HldE OS=Pseudomonas aeruginosa (strain
UCBPP-PA14) GN=hldE PE=3 SV=1
Length = 474
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERM 78
G FD LH GH +L+ A DR++VGV D +T K I VD RM
Sbjct: 346 GCFDILHAGHVTYLE-QARAQGDRLIVGVNDDASVTRLKGVGRPINSVDRRM 396
>sp|B7V388|HLDE_PSEA8 Bifunctional protein HldE OS=Pseudomonas aeruginosa (strain LESB58)
GN=hldE PE=3 SV=1
Length = 473
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERM 78
G FD LH GH +L+ A DR++VGV D +T K I VD RM
Sbjct: 346 GCFDILHAGHVTYLE-QARAQGDRLIVGVNDDASVTRLKGVGRPINSVDRRM 396
>sp|Q12YR1|RIBL_METBU FAD synthase OS=Methanococcoides burtonii (strain DSM 6242)
GN=ribL PE=3 SV=1
Length = 143
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83
V+ GTFD LH GH FL+ + D + V V M+ +K A+ I P +R++ + A
Sbjct: 4 VLATGTFDLLHPGHVFFLRQARSFG-DELYVLVARDSMIKHK--AQPIVPEGQRLKMISA 60
Query: 84 Y 84
+
Sbjct: 61 F 61
>sp|Q8PZN4|COAD_METMA Phosphopantetheine adenylyltransferase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM
11833 / OCM 88) GN=coaD PE=3 SV=1
Length = 154
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE 82
V +GGTF LHDGH ++ + E+A ++ +G+ ML E + R R +E
Sbjct: 4 VAVGGTFQYLHDGHARLIEKAFEIAGSGKVYIGLTSDEMLQKNHSVESYK--IRRSRLLE 61
Query: 83 AYIKVLG 89
YIK +G
Sbjct: 62 -YIKKMG 67
>sp|B5FB67|HLDE_VIBFM Bifunctional protein HldE OS=Vibrio fischeri (strain MJ11) GN=hldE
PE=3 SV=1
Length = 476
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAEL------IQPVDER 77
V+ G FD LH GH +L +AEL DR++V V TN+ L I P D R
Sbjct: 343 VMTNGCFDILHAGHVSYLNHAAELG-DRLIVAVN-----TNESVQRLKGPGRPINPTDRR 396
Query: 78 M 78
M
Sbjct: 397 M 397
>sp|Q5E2L7|HLDE_VIBF1 Bifunctional protein HldE OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=hldE PE=3 SV=1
Length = 476
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 12/61 (19%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAEL------IQPVDER 77
V+ G FD LH GH +L +AEL DR++V V TN+ L I P D R
Sbjct: 343 VMTNGCFDILHAGHVSYLNHAAELG-DRLIVAVN-----TNESVQRLKGPGRPINPTDRR 396
Query: 78 M 78
M
Sbjct: 397 M 397
>sp|Q17V95|COAD_HELAH Phosphopantetheine adenylyltransferase OS=Helicobacter
acinonychis (strain Sheeba) GN=coaD PE=3 SV=1
Length = 157
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 25 VLGGTFDRLHDGHRLFLKASAELARDRIVVGV----CDGPMLTNKQFAELIQPVDERMRN 80
+ GTFD + +GH + S+EL ++++V V PM + K+ E+IQ + +N
Sbjct: 6 IYPGTFDPVTNGHIDIIHRSSELF-EKLIVAVAHSSAKNPMFSLKERLEMIQLATKSFKN 64
Query: 81 VEA 83
VE
Sbjct: 65 VEC 67
>sp|A6VDB5|HLDE_PSEA7 Bifunctional protein HldE OS=Pseudomonas aeruginosa (strain PA7)
GN=hldE PE=3 SV=1
Length = 474
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 28 GTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERM 78
G FD LH GH +L+ A DR++VGV D +T K I VD RM
Sbjct: 346 GCFDILHAGHVTYLE-QARAQGDRLIVGVNDDASVTRLKGAGRPINSVDRRM 396
>sp|C6A439|RIBL_THESM FAD synthase OS=Thermococcus sibiricus (strain MM 739 / DSM
12597) GN=ribL PE=3 SV=1
Length = 148
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVV 54
VV GG FD LH GH FLK + EL + +V+
Sbjct: 9 VVTGGVFDILHVGHIHFLKQAKELGDELVVI 39
>sp|B2UVM0|COAD_HELPS Phosphopantetheine adenylyltransferase OS=Helicobacter pylori
(strain Shi470) GN=coaD PE=3 SV=1
Length = 157
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 25 VLGGTFDRLHDGHRLFLKASAELARDRIVV---GVCDGPMLTNKQFAELIQPVDERMRNV 81
+ GTFD + +GH + S+EL IV PM + K+ E+IQ + +NV
Sbjct: 6 IYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAYSCAKNPMFSLKERLEMIQLATKGFKNV 65
Query: 82 EA 83
E
Sbjct: 66 EC 67
>sp|B3EQ84|NADD_CHLPB Probable nicotinate-nucleotide adenylyltransferase OS=Chlorobium
phaeobacteroides (strain BS1) GN=nadD PE=3 SV=1
Length = 198
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 24 VVLGGTFDRLHDGH-RLFLKASAELARDRIVVGVCDGPMLTNKQFAE 69
V GG+FD H+GH L L A L DR+V+ + P+ Q A+
Sbjct: 4 AVFGGSFDPPHNGHLALCLYARELLQVDRLVISASNNPLKDAPQAAD 50
>sp|O26932|RIBL_METTH FAD synthase OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=ribL PE=3 SV=1
Length = 151
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 14/68 (20%)
Query: 23 AVVLGGTFDRLHDGHRLFLKASAE-----------LARDRIVVGVCDGPMLTNKQFAELI 71
V+ GTFD +H GH FL+ + + LARD V P++ KQ E++
Sbjct: 3 TVMATGTFDIIHPGHGFFLEEARKLGGEDARLVVVLARDSTVRARKRTPIVGEKQRLEVV 62
Query: 72 ---QPVDE 76
+PVDE
Sbjct: 63 RMLKPVDE 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,332,458
Number of Sequences: 539616
Number of extensions: 1343612
Number of successful extensions: 5206
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 163
Number of HSP's that attempted gapping in prelim test: 5077
Number of HSP's gapped (non-prelim): 288
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)