Query 034114
Match_columns 103
No_of_seqs 160 out of 1170
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 09:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034114.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034114hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02388 phosphopantetheine ad 99.8 2.3E-20 5.1E-25 132.8 9.4 90 3-92 1-90 (177)
2 cd02172 RfaE_N N-terminal doma 99.8 9.4E-19 2E-23 120.5 8.8 80 21-102 4-100 (144)
3 TIGR02199 rfaE_dom_II rfaE bif 99.8 9E-19 1.9E-23 120.5 8.4 81 21-102 11-109 (144)
4 cd02164 PPAT_CoAS phosphopante 99.7 9.6E-18 2.1E-22 115.7 9.2 69 23-91 1-69 (143)
5 KOG3351 Predicted nucleotidylt 99.7 1.4E-18 3E-23 128.8 4.8 86 10-95 131-216 (293)
6 cd02174 CCT CTP:phosphocholine 99.7 9.7E-18 2.1E-22 116.4 8.8 80 21-101 2-100 (150)
7 cd02173 ECT CTP:phosphoethanol 99.7 9.4E-18 2E-22 116.7 8.6 80 21-101 2-100 (152)
8 COG0615 TagD Cytidylyltransfer 99.7 6.1E-18 1.3E-22 116.2 7.3 80 22-102 2-99 (140)
9 COG1019 Predicted nucleotidylt 99.7 7.8E-18 1.7E-22 116.8 6.4 73 19-93 3-75 (158)
10 cd02170 cytidylyltransferase c 99.7 2.3E-17 5E-22 111.6 7.0 80 21-102 1-97 (136)
11 cd02171 G3P_Cytidylyltransfera 99.7 7.4E-17 1.6E-21 108.2 8.8 78 21-100 1-96 (129)
12 PRK00777 phosphopantetheine ad 99.7 8.1E-17 1.8E-21 112.1 8.8 66 21-88 1-66 (153)
13 PF06574 FAD_syn: FAD syntheta 99.7 7.7E-17 1.7E-21 112.6 7.6 83 19-101 3-118 (157)
14 PTZ00308 ethanolamine-phosphat 99.7 3E-16 6.5E-21 121.7 8.5 81 20-102 10-108 (353)
15 TIGR01518 g3p_cytidyltrns glyc 99.7 3.9E-16 8.5E-21 104.6 7.7 75 24-100 1-93 (125)
16 cd02064 FAD_synthetase_N FAD s 99.7 3.7E-16 8E-21 110.6 7.6 79 23-101 1-111 (180)
17 PTZ00308 ethanolamine-phosphat 99.6 7.6E-16 1.6E-20 119.5 9.3 80 20-100 191-289 (353)
18 PLN02406 ethanolamine-phosphat 99.6 3.6E-15 7.9E-20 117.7 9.3 82 17-101 49-153 (418)
19 PRK05627 bifunctional riboflav 99.6 4.6E-15 9.9E-20 113.1 9.3 79 23-101 15-126 (305)
20 PLN02406 ethanolamine-phosphat 99.6 4.3E-15 9.4E-20 117.2 9.2 83 16-99 246-347 (418)
21 PRK01170 phosphopantetheine ad 99.6 2.3E-15 4.9E-20 115.6 7.2 63 23-88 2-64 (322)
22 COG0669 CoaD Phosphopantethein 99.6 5.2E-15 1.1E-19 103.2 8.1 70 21-98 2-71 (159)
23 PLN02413 choline-phosphate cyt 99.6 1.3E-14 2.9E-19 109.5 9.0 80 17-97 23-121 (294)
24 PRK11316 bifunctional heptose 99.6 1.3E-14 2.7E-19 114.7 8.0 82 20-102 339-438 (473)
25 PRK13964 coaD phosphopantethei 99.6 2.8E-14 6.2E-19 98.2 8.5 67 21-95 1-67 (140)
26 TIGR00125 cyt_tran_rel cytidyl 99.5 1.6E-14 3.4E-19 86.3 6.3 62 23-86 1-62 (66)
27 TIGR00083 ribF riboflavin kina 99.5 1.4E-14 3.1E-19 109.7 7.1 77 24-101 1-110 (288)
28 PRK07143 hypothetical protein; 99.5 3.2E-14 6.9E-19 107.5 8.8 84 16-101 10-119 (279)
29 COG0196 RibF FAD synthase [Coe 99.5 3.3E-14 7.1E-19 108.5 8.2 82 20-101 14-127 (304)
30 cd02039 cytidylyltransferase_l 99.5 1.2E-13 2.5E-18 92.2 8.2 78 23-102 1-105 (143)
31 PRK00168 coaD phosphopantethei 99.5 1.4E-13 3.1E-18 95.9 8.8 60 21-87 1-60 (159)
32 TIGR01510 coaD_prev_kdtB pante 99.4 1.4E-12 3E-17 90.6 8.4 64 23-94 1-64 (155)
33 COG2870 RfaE ADP-heptose synth 99.4 4.7E-13 1E-17 105.2 6.5 79 22-101 333-429 (467)
34 cd02167 NMNAT_NadR Nicotinamid 99.4 2.2E-12 4.8E-17 90.1 8.6 68 23-95 1-68 (158)
35 cd02163 PPAT Phosphopantethein 99.4 3.1E-12 6.7E-17 88.7 8.2 56 23-85 1-56 (153)
36 PF01467 CTP_transf_2: Cytidyl 99.4 1.6E-12 3.4E-17 87.2 6.4 61 25-88 1-62 (157)
37 cd02156 nt_trans nucleotidyl t 99.3 9.7E-13 2.1E-17 85.5 4.2 57 23-83 1-57 (105)
38 PRK00071 nadD nicotinic acid m 99.3 7.2E-12 1.6E-16 90.0 8.6 65 20-87 3-68 (203)
39 cd02166 NMNAT_Archaea Nicotina 99.3 1.9E-11 4.1E-16 85.7 9.1 62 23-88 1-62 (163)
40 TIGR01526 nadR_NMN_Atrans nico 99.3 1.9E-11 4E-16 93.8 9.3 73 21-98 1-74 (325)
41 TIGR01527 arch_NMN_Atrans nico 99.3 2.2E-11 4.7E-16 85.9 8.5 63 23-89 1-63 (165)
42 COG1057 NadD Nicotinic acid mo 99.3 2E-11 4.4E-16 88.3 8.5 64 20-86 2-66 (197)
43 KOG2803 Choline phosphate cyti 99.3 1.2E-11 2.7E-16 94.5 7.3 80 19-101 6-104 (358)
44 PRK08887 nicotinic acid mononu 99.3 2.5E-11 5.5E-16 85.8 8.0 68 21-95 2-70 (174)
45 PRK06973 nicotinic acid mononu 99.2 1.3E-10 2.7E-15 86.4 10.5 65 19-88 20-85 (243)
46 PRK08099 bifunctional DNA-bind 99.2 6.5E-11 1.4E-15 93.2 9.4 76 19-97 50-130 (399)
47 cd02168 NMNAT_Nudix Nicotinami 99.2 8E-11 1.7E-15 83.9 9.0 60 24-87 2-61 (181)
48 cd02165 NMNAT Nicotinamide/nic 99.2 7E-11 1.5E-15 84.1 8.3 68 23-95 1-69 (192)
49 PRK01153 nicotinamide-nucleoti 99.2 1.6E-10 3.4E-15 82.0 9.0 61 23-88 2-63 (174)
50 KOG2803 Choline phosphate cyti 99.2 1.1E-10 2.3E-15 89.4 8.4 81 16-97 193-292 (358)
51 TIGR00482 nicotinate (nicotina 99.2 1E-10 2.2E-15 83.6 7.6 60 25-87 1-61 (193)
52 PRK07152 nadD putative nicotin 99.2 1.7E-10 3.6E-15 88.9 9.3 64 21-87 1-65 (342)
53 PRK05379 bifunctional nicotina 99.1 3E-10 6.5E-15 87.6 9.4 64 20-87 5-68 (340)
54 cd02169 Citrate_lyase_ligase C 99.1 3E-10 6.5E-15 86.5 9.0 37 19-56 112-148 (297)
55 TIGR00124 cit_ly_ligase [citra 99.1 3.8E-10 8.2E-15 87.1 8.6 69 20-98 138-206 (332)
56 PLN02945 nicotinamide-nucleoti 99.0 5E-09 1.1E-13 77.3 9.0 71 15-86 16-88 (236)
57 cd09286 NMNAT_Eukarya Nicotina 98.8 2.4E-08 5.1E-13 73.3 7.7 67 23-95 2-75 (225)
58 PRK13793 nicotinamide-nucleoti 98.8 3.3E-08 7.2E-13 71.5 7.6 63 20-86 3-65 (196)
59 KOG2804 Phosphorylcholine tran 98.8 2.6E-08 5.7E-13 76.1 6.9 75 19-95 61-155 (348)
60 COG1056 NadR Nicotinamide mono 98.7 1.1E-07 2.4E-12 67.5 8.4 77 20-100 2-81 (172)
61 smart00764 Citrate_ly_lig Citr 98.6 2.1E-07 4.5E-12 66.5 8.0 62 27-98 5-66 (182)
62 PRK13670 hypothetical protein; 98.4 9.8E-07 2.1E-11 69.5 7.2 75 21-98 1-103 (388)
63 PRK13671 hypothetical protein; 98.2 8.3E-06 1.8E-10 62.4 7.4 71 26-99 5-103 (298)
64 PF08218 Citrate_ly_lig: Citra 97.8 0.00012 2.6E-09 52.4 6.8 60 25-95 3-63 (182)
65 TIGR00018 panC pantoate--beta- 97.5 0.00045 9.8E-09 52.6 7.0 54 23-82 26-83 (282)
66 PRK00380 panC pantoate--beta-a 97.5 0.00042 9.1E-09 52.7 6.8 50 24-79 27-80 (281)
67 cd00560 PanC Pantoate-beta-ala 97.5 0.00044 9.6E-09 52.5 6.6 55 21-79 24-80 (277)
68 TIGR00339 sopT ATP sulphurylas 97.5 0.0013 2.8E-08 52.0 9.4 61 22-88 184-245 (383)
69 PLN02660 pantoate--beta-alanin 97.4 0.00055 1.2E-08 52.2 6.8 55 21-81 23-81 (284)
70 COG3053 CitC Citrate lyase syn 97.0 0.003 6.5E-08 48.8 6.4 70 19-99 143-214 (352)
71 PF05636 HIGH_NTase1: HIGH Nuc 96.6 0.0078 1.7E-07 47.7 6.4 42 21-62 1-42 (388)
72 COG1323 Predicted nucleotidylt 95.6 0.029 6.3E-07 44.2 5.3 35 25-59 5-40 (358)
73 PF01747 ATP-sulfurylase: ATP- 95.6 0.15 3.3E-06 37.4 8.7 61 21-87 20-80 (215)
74 COG2046 MET3 ATP sulfurylase ( 94.9 0.3 6.4E-06 38.9 8.9 31 20-50 182-212 (397)
75 PF02569 Pantoate_ligase: Pant 94.2 0.21 4.6E-06 38.1 6.5 39 22-61 22-60 (280)
76 cd00517 ATPS ATP-sulfurylase. 93.7 0.8 1.7E-05 36.0 9.1 33 22-54 157-190 (353)
77 COG0414 PanC Panthothenate syn 93.3 0.41 8.9E-06 36.6 6.7 40 21-61 21-60 (285)
78 PRK05537 bifunctional sulfate 92.8 0.96 2.1E-05 37.6 8.7 65 21-91 186-250 (568)
79 PRK04149 sat sulfate adenylylt 92.6 1.1 2.5E-05 35.7 8.6 29 21-49 186-214 (391)
80 PRK13477 bifunctional pantoate 91.6 0.76 1.6E-05 37.8 6.7 37 23-60 21-57 (512)
81 KOG3199 Nicotinamide mononucle 91.1 1.4 3E-05 32.7 6.9 61 23-86 10-75 (234)
82 smart00764 Citrate_ly_lig Citr 87.4 0.41 9E-06 34.1 1.9 22 80-101 94-119 (182)
83 KOG3042 Panthothenate syntheta 76.5 5.4 0.00012 29.9 4.3 39 21-60 23-61 (283)
84 PLN02341 pfkB-type carbohydrat 76.3 0.66 1.4E-05 37.3 -0.6 29 20-48 413-441 (470)
85 PRK13354 tyrosyl-tRNA syntheta 59.9 89 0.0019 25.0 9.6 63 22-84 33-104 (410)
86 PRK09288 purT phosphoribosylgl 46.9 80 0.0017 24.2 6.1 83 3-99 1-85 (395)
87 COG0162 TyrS Tyrosyl-tRNA synt 46.8 97 0.0021 24.9 6.6 27 22-48 32-61 (401)
88 PF04978 DUF664: Protein of un 44.2 14 0.00029 25.1 1.3 12 34-45 137-148 (150)
89 PF07355 GRDB: Glycine/sarcosi 40.0 77 0.0017 25.2 5.0 57 36-100 35-91 (349)
90 PF14639 YqgF: Holliday-juncti 39.6 44 0.00094 23.0 3.3 21 77-97 51-71 (150)
91 TIGR01918 various_sel_PB selen 35.6 90 0.002 25.5 4.9 57 36-100 31-87 (431)
92 TIGR01917 gly_red_sel_B glycin 35.0 95 0.0021 25.4 4.9 42 51-100 46-87 (431)
93 PF00579 tRNA-synt_1b: tRNA sy 34.9 89 0.0019 23.3 4.6 30 29-59 15-46 (292)
94 COG0215 CysS Cysteinyl-tRNA sy 33.1 29 0.00063 28.5 1.7 48 8-58 11-67 (464)
95 cd00395 Tyr_Trp_RS_core cataly 33.0 2.1E+02 0.0046 21.4 6.9 20 29-48 9-28 (273)
96 TIGR00608 radc DNA repair prot 31.5 1.1E+02 0.0023 22.4 4.4 74 23-101 134-210 (218)
97 cd05785 DNA_polB_like2_exo Unc 30.6 46 0.001 23.9 2.3 23 79-102 63-86 (207)
98 PF02677 DUF208: Uncharacteriz 29.8 1.3E+02 0.0029 21.4 4.5 50 41-98 15-64 (176)
99 COG2003 RadC DNA repair protei 29.5 1.1E+02 0.0024 22.8 4.1 73 22-101 139-216 (224)
100 KOG3076 5'-phosphoribosylglyci 28.8 33 0.00072 25.1 1.3 39 3-48 97-136 (206)
101 KOG2145 Cytoplasmic tryptophan 28.6 85 0.0019 24.8 3.5 62 29-99 95-159 (397)
102 cd00805 TyrRS_core catalytic c 27.8 2.6E+02 0.0056 20.8 6.5 31 29-59 10-42 (269)
103 PRK00024 hypothetical protein; 26.6 1.8E+02 0.0039 21.3 4.8 74 23-101 140-216 (224)
104 cd05781 DNA_polB_B3_exo DEDDy 26.3 76 0.0016 22.3 2.8 23 79-102 53-76 (188)
105 PRK07206 hypothetical protein; 26.2 3.1E+02 0.0067 21.2 6.5 71 22-100 3-81 (416)
106 cd08071 MPN_DUF2466 Mov34/MPN/ 25.9 1.9E+02 0.0041 18.7 4.4 73 23-101 34-110 (113)
107 TIGR00435 cysS cysteinyl-tRNA 25.8 1.6E+02 0.0035 23.8 4.9 37 23-59 23-67 (465)
108 PLN02486 aminoacyl-tRNA ligase 25.8 3.5E+02 0.0075 21.6 8.3 37 23-59 74-116 (383)
109 cd05160 DEDDy_DNA_polB_exo DED 25.2 1.2E+02 0.0025 21.0 3.6 24 79-103 68-92 (199)
110 PF13483 Lactamase_B_3: Beta-l 24.3 1E+02 0.0022 20.5 3.0 60 22-94 98-160 (163)
111 PRK12418 cysteinyl-tRNA synthe 23.8 1.6E+02 0.0035 23.5 4.4 37 23-59 11-55 (384)
112 cd03066 PDI_b_Calsequestrin_mi 23.5 1.9E+02 0.0041 17.8 4.1 38 23-60 20-57 (102)
113 PRK12656 fructose-6-phosphate 22.7 1.2E+02 0.0025 22.4 3.2 45 51-99 20-66 (222)
114 cd05780 DNA_polB_Kod1_like_exo 22.2 98 0.0021 21.7 2.7 21 81-102 63-84 (195)
115 COG1519 KdtA 3-deoxy-D-manno-o 21.8 37 0.00081 27.5 0.5 33 22-58 319-351 (419)
116 COG1505 Serine proteases of th 21.1 3.4E+02 0.0073 23.5 5.9 31 19-49 578-610 (648)
117 cd05779 DNA_polB_epsilon_exo D 20.4 1.1E+02 0.0024 22.0 2.7 22 80-102 79-101 (204)
118 cd05777 DNA_polB_delta_exo DED 20.4 1.1E+02 0.0025 22.0 2.8 21 81-102 78-99 (230)
No 1
>PLN02388 phosphopantetheine adenylyltransferase
Probab=99.83 E-value=2.3e-20 Score=132.77 Aligned_cols=90 Identities=73% Similarity=1.182 Sum_probs=80.5
Q ss_pred cccccccccccCCCCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHH
Q 034114 3 MAILDESVVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE 82 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~ 82 (103)
|....||++.++.++++.++.|+++||||++|.||+.||++|.+++.+.++|+++.++.+.++...+.+.|+++|.+.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~Vv~gGtFDgLH~GHq~LL~~A~~~a~~~vvIgft~~p~l~~k~~~~~I~~~e~R~~~l~ 80 (177)
T PLN02388 1 MVTVKDSVADSKLSPPNSYGAVVLGGTFDRLHDGHRLFLKAAAELARDRIVIGVCDGPMLSKKQFAELIQPIEERMHNVE 80 (177)
T ss_pred CcccccccccccCCCCCcCCeEEEEecCCccCHHHHHHHHHHHHhhhcCEEEecCCChhhcccCCCcccCCHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999996689999999988765555678999999999999
Q ss_pred HHHHhcCCCE
Q 034114 83 AYIKVLGKWM 92 (103)
Q Consensus 83 ~fi~~~~~~~ 92 (103)
+|+..+.|+.
T Consensus 81 ~fl~~~~p~~ 90 (177)
T PLN02388 81 EYIKSIKPEL 90 (177)
T ss_pred HHHHHcCCCc
Confidence 9999887753
No 2
>cd02172 RfaE_N N-terminal domain of RfaE. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=99.78 E-value=9.4e-19 Score=120.45 Aligned_cols=80 Identities=25% Similarity=0.203 Sum_probs=69.1
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHH-----------------HHHH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMR-----------------NVEA 83 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~-----------------~~~~ 83 (103)
.++|++.|+||++|.||+++|++|+++++ .++|++++++.+.+. +..++.|.++|.+ ++++
T Consensus 4 ~~~vv~~G~FDgvH~GH~~ll~~a~~~~~-~~vv~~~~d~~~~~~-~~~~i~~~~eR~~~l~~lg~VD~vi~~~~~~~~~ 81 (144)
T cd02172 4 KTVVLCHGVFDLLHPGHVRHLQAARSLGD-ILVVSLTSDRYVNKG-PGRPIFPEDLRAEVLAALGFVDYVVLFDNPTALE 81 (144)
T ss_pred CEEEEEecccCCCCHHHHHHHHHHHHhCC-eEEEEEeChHHhccC-CCCCCCCHHHHHHHHHccCCccEEEECCCCCHHH
Confidence 46899999999999999999999999994 889999998766433 2467899999974 3589
Q ss_pred HHHhcCCCEEEEeeCceee
Q 034114 84 YIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 84 fi~~~~~~~~V~G~d~~f~ 102 (103)
|+++++++++|+|+||+|.
T Consensus 82 fi~~l~~~~vv~G~d~~fg 100 (144)
T cd02172 82 IIDALQPNIYVKGGDYENP 100 (144)
T ss_pred HHHHhCCCEEEECCCcccC
Confidence 9999999999999999983
No 3
>TIGR02199 rfaE_dom_II rfaE bifunctional protein, domain II. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. Domain I (TIGR02198) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.78 E-value=9e-19 Score=120.49 Aligned_cols=81 Identities=28% Similarity=0.311 Sum_probs=68.2
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHH-----------------HHH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMR-----------------NVE 82 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~-----------------~~~ 82 (103)
.++|++.|+||++|.||+.+|++|++.|+ .++|++++|+... .+....++.+.++|.+ +++
T Consensus 11 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~-~~~v~v~~d~~~~~~k~~~~~l~~~eeR~~~l~~~~~VD~vi~f~~~~~~ 89 (144)
T TIGR02199 11 KKIVFTNGCFDILHAGHVSYLQQARALGD-RLVVGVNSDASVKRLKGETRPINPEEDRAEVLAALSSVDYVVIFDEDTPE 89 (144)
T ss_pred CCEEEEeCcccccCHHHHHHHHHHHHhCC-ccEEEEECCcCHHHhCCCCCCcCCHHHHHHHHHhcCCCCEEEECCCCCHH
Confidence 57899999999999999999999999984 7899999997432 1222246899999974 358
Q ss_pred HHHHhcCCCEEEEeeCceee
Q 034114 83 AYIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 83 ~fi~~~~~~~~V~G~d~~f~ 102 (103)
+|++.++++++|+|+||+|+
T Consensus 90 ~fi~~l~~~~vv~G~d~~~~ 109 (144)
T TIGR02199 90 ELIGELKPDILVKGGDYKVE 109 (144)
T ss_pred HHHHHhCCCEEEECCCCCCC
Confidence 99999999999999999985
No 4
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=99.75 E-value=9.6e-18 Score=115.69 Aligned_cols=69 Identities=41% Similarity=0.763 Sum_probs=60.8
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKW 91 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~ 91 (103)
+|++|||||++|.||+.++++|.+++.+.+++|+|+|+++++++..+.+.|+++|.+++++|++++.|+
T Consensus 1 ~v~~GGtFD~lH~GH~~Ll~~a~~~~~d~v~vgvt~d~~~~~k~~~~~i~s~e~R~~~l~~~l~~~~~~ 69 (143)
T cd02164 1 KVAVGGTFDRLHDGHKILLSVAFLLAGEKLIIGVTSDELLKNKSLKELIEPYEERIANLHEFLVDLKPT 69 (143)
T ss_pred CEEEcccCCCCCHHHHHHHHHHHHHhcCCcEEEEeCchhcccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 478999999999999999999999985689999999987766554567899999999999999988764
No 5
>KOG3351 consensus Predicted nucleotidyltransferase [General function prediction only]
Probab=99.74 E-value=1.4e-18 Score=128.79 Aligned_cols=86 Identities=44% Similarity=0.748 Sum_probs=79.6
Q ss_pred ccccCCCCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcC
Q 034114 10 VVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLG 89 (103)
Q Consensus 10 ~~~~~~~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~ 89 (103)
.+.++.+|.+.+.+++.|||||.+|.||+-||..|++++.+.++|||+.++++++|...++++|+++|.+.+.+|++.++
T Consensus 131 ~e~e~~~~a~~~~~~alGGTFDrLH~gHKvLLs~aa~la~~~lVvGV~d~elL~kK~~~Eliepie~R~~~V~~Fl~~IK 210 (293)
T KOG3351|consen 131 DESEKSGPANKFMVVALGGTFDRLHDGHKVLLSVAAELASDRLVVGVTDDELLKKKVLKELIEPIEERKEHVSNFLKSIK 210 (293)
T ss_pred cccccccchhcceeEEeccchhhhccchHHHHHHHHHHhhceEEEEecChHHHHHhHHHHHhhhHHHHHHHHHHHHHhcC
Confidence 45578888999999999999999999999999999999988999999999999888888999999999999999999999
Q ss_pred CCEEEE
Q 034114 90 KWMHVL 95 (103)
Q Consensus 90 ~~~~V~ 95 (103)
|+..+-
T Consensus 211 p~l~~~ 216 (293)
T KOG3351|consen 211 PDLNVR 216 (293)
T ss_pred CCceEE
Confidence 987653
No 6
>cd02174 CCT CTP:phosphocholine cytidylyltransferase. CTP:phosphocholine cytidylyltransferase (CCT) catalyzes the condensation of CTP and phosphocholine to form CDP-choline as the rate-limiting and regulatory step in the CDP-choline pathway. CCT is unique in that its enzymatic activity is regulated by the extent of its association with membrane structures. A current model posts that the elastic stress of the bilayer curvature is sensed by CCT and this governs the degree of membrane association, thus providing a mechanism for both positive and negative regulation of activity.
Probab=99.74 E-value=9.7e-18 Score=116.44 Aligned_cols=80 Identities=21% Similarity=0.257 Sum_probs=66.6
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecCCCCCcccccCCCCCHHHHHHHH------------------
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV------------------ 81 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~------------------ 81 (103)
..+|++.|+||++|.||+.+|++|++++ ++.++|||++|+.+...+.. ++.++++|.+++
T Consensus 2 ~~rV~~~G~FDl~H~GHi~~L~~A~~lg~~d~LiVgV~sD~~~~~~k~~-pi~~~~eR~~~l~~~~~Vd~Vi~~~~~~~~ 80 (150)
T cd02174 2 PVRVYVDGCFDLFHYGHANALRQAKKLGPNDYLIVGVHSDEEIHKHKGP-PVMTEEERYEAVRHCKWVDEVVEGAPYVTT 80 (150)
T ss_pred CeEEEEeCccCCCCHHHHHHHHHHHHhCCCCEEEEEEecCHHHhhcCCC-CcCCHHHHHHHHHhcCCCCeEEECCCCCCh
Confidence 3579999999999999999999999998 13899999999766332223 899999998532
Q ss_pred HHHHHhcCCCEEEEeeCcee
Q 034114 82 EAYIKVLGKWMHVLFFGSYF 101 (103)
Q Consensus 82 ~~fi~~~~~~~~V~G~d~~f 101 (103)
.+|+++++||++|.|.||..
T Consensus 81 ~~~i~~~~~d~vv~G~d~~~ 100 (150)
T cd02174 81 PEFLDKYKCDYVAHGDDIYL 100 (150)
T ss_pred HHHHHHhCCCEEEECCCCCC
Confidence 57888999999999999863
No 7
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=99.74 E-value=9.4e-18 Score=116.69 Aligned_cols=80 Identities=28% Similarity=0.289 Sum_probs=68.0
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCc-ccccCCCCCHHHHHHH------------------H
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN-KQFAELIQPVDERMRN------------------V 81 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~-k~~~~~i~~f~~R~~~------------------~ 81 (103)
.++|++.|+||++|.||+.+|++|++++ +.++|||++|+.+.. |....++.|+++|.+. .
T Consensus 2 ~~iv~~~G~FD~~H~GHi~~L~~A~~lg-d~liVgV~~D~~~~~~K~~~~pi~~~~eR~~~v~~~~~Vd~V~v~~~~~~~ 80 (152)
T cd02173 2 DKVVYVDGAFDLFHIGHIEFLEKARELG-DYLIVGVHDDQTVNEYKGSNYPIMNLHERVLSVLACRYVDEVVIGAPYVIT 80 (152)
T ss_pred CeEEEEcCcccCCCHHHHHHHHHHHHcC-CEEEEEEeCcHHHHhhcCCCCCCCCHHHHHHHHHhcCCCCEEEECCCCcch
Confidence 4689999999999999999999999998 599999999976533 3334689999999853 3
Q ss_pred HHHHHhcCCCEEEEeeCcee
Q 034114 82 EAYIKVLGKWMHVLFFGSYF 101 (103)
Q Consensus 82 ~~fi~~~~~~~~V~G~d~~f 101 (103)
.+|+++++|+++|.|.|+..
T Consensus 81 ~~~~~~~~~d~vv~G~d~~~ 100 (152)
T cd02173 81 KELIEHFKIDVVVHGKTEET 100 (152)
T ss_pred HHHHHHhCCCEEEECCCCcc
Confidence 57899999999999999865
No 8
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=99.74 E-value=6.1e-18 Score=116.23 Aligned_cols=80 Identities=28% Similarity=0.331 Sum_probs=65.1
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH------------------HH
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV------------------EA 83 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~------------------~~ 83 (103)
.+|++.||||.+|+||..+|++|+++| +.++|++..|+.....++..+++|.++|.+.+ .+
T Consensus 2 ~rV~~~GtFDilH~GHi~~L~~Ak~lG-d~liVv~a~de~~~~~~k~~pi~~~~qR~evl~s~ryVD~vi~~~p~~~~~~ 80 (140)
T COG0615 2 KRVWADGTFDILHPGHIEFLRQAKKLG-DELIVVVARDETVIKRKKRKPIMPEEQRAEVLESLRYVDEVILGAPWDIKFE 80 (140)
T ss_pred cEEEEeeEEEEechhHHHHHHHHHHhC-CeEEEEEeccHHHHHhcCCCCCCCHHHHHHHHHcCcchheeeeCCccccChH
Confidence 469999999999999999999999999 56667666665443322346899999998622 57
Q ss_pred HHHhcCCCEEEEeeCceee
Q 034114 84 YIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 84 fi~~~~~~~~V~G~d~~f~ 102 (103)
++++++||++++|+|++|+
T Consensus 81 ~i~~~k~Div~lG~D~~~d 99 (140)
T COG0615 81 DIEEYKPDIVVLGDDQKFD 99 (140)
T ss_pred HHHHhCCCEEEECCCCcCC
Confidence 7889999999999999976
No 9
>COG1019 Predicted nucleotidyltransferase [General function prediction only]
Probab=99.73 E-value=7.8e-18 Score=116.81 Aligned_cols=73 Identities=33% Similarity=0.636 Sum_probs=65.9
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMH 93 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~ 93 (103)
.++.+|++|||||.+|.||+.||+.|.+.| +.+++|+|+|++++.+ +.+.+.||+.|.+++.+|+...+++..
T Consensus 3 ~kfm~vavGGTFd~LH~GHk~LL~~A~~~G-~~v~IGlTsDe~~k~~-k~~~i~p~~~R~~~l~~fl~~~~~~~~ 75 (158)
T COG1019 3 IKFMKVAVGGTFDRLHDGHKKLLEVAFEIG-DRVTIGLTSDELAKKK-KKEKIEPYEVRLRNLRNFLESIKADYE 75 (158)
T ss_pred ccceEEEecccchhhhhhHHHHHHHHHHhC-CeEEEEEccHHHHHHh-ccccCCcHHHHHHHHHHHHHHhcCCcc
Confidence 567899999999999999999999999999 4899999999998765 457899999999999999998877765
No 10
>cd02170 cytidylyltransferase cytidylyltransferase. The cytidylyltransferase family includes cholinephosphate cytidylyltransferase (CCT), glycerol-3-phosphate cytidylyltransferase, RafE and phosphoethanolamine cytidylyltransferase (ECT). All enzymes catalyze the transfer of a cytidylyl group from CTP to various substrates.
Probab=99.71 E-value=2.3e-17 Score=111.59 Aligned_cols=80 Identities=29% Similarity=0.365 Sum_probs=64.5
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH--------------HHH--
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV--------------EAY-- 84 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~--------------~~f-- 84 (103)
+++++++|+||++|.||+.++++|.+.+ +.++|++++|+.+.+.+ ..++.++++|.+.+ ++|
T Consensus 1 ~~~v~~~G~FD~~H~GH~~ll~~a~~~~-~~l~v~v~~~~~~~~~~-~~~~~~~~eR~~~l~~~~~vd~v~~~~~~~~~~ 78 (136)
T cd02170 1 MKRVYAAGTFDIIHPGHIRFLEEAKKLG-DYLIVGVARDETVAKIK-RRPILPEEQRAEVVEALKYVDEVILGHPWSYFK 78 (136)
T ss_pred CeEEEEcCccCCCCHHHHHHHHHHHHhC-CEEEEEECCcHHHHhcC-CCCCCCHHHHHHHHHcCCCcCEEEECCCCCHhH
Confidence 5789999999999999999999999998 58999999996553222 24789999998633 223
Q ss_pred -HHhcCCCEEEEeeCceee
Q 034114 85 -IKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 85 -i~~~~~~~~V~G~d~~f~ 102 (103)
+.+++|+++|+|+||+|.
T Consensus 79 ~l~~~~~~~vv~G~d~~fg 97 (136)
T cd02170 79 PLEELKPDVIVLGDDQKNG 97 (136)
T ss_pred HHHHHCCCEEEECCCCCCC
Confidence 346789999999999883
No 11
>cd02171 G3P_Cytidylyltransferase glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase,(CDP-glycerol pyrophosphorylase). Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most, but not all, species encoding proteins in this family are Gram-positive bacteria. A closely related protein assigned a different function experimentally is a human ethanolamine-phosphate cytidylyltransferase.
Probab=99.71 E-value=7.4e-17 Score=108.24 Aligned_cols=78 Identities=26% Similarity=0.295 Sum_probs=62.5
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH---------------HHH-
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV---------------EAY- 84 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~---------------~~f- 84 (103)
|+++++.|+||++|.||+.+|++|+++++ .+++++++|+..+.+. ..++.|+++|.+.+ ++|
T Consensus 1 ~~~v~~~G~FDgvH~GH~~ll~~a~~~~~-~l~v~v~~d~~~~~~~-~~~~~~~~~R~~~l~~~~~vd~v~~~~~~~~f~ 78 (129)
T cd02171 1 MKVVITYGTFDLLHIGHLNLLERAKALGD-KLIVAVSTDEFNAGKG-KKAVIPYEQRAEILESIRYVDLVIPETNWEQKI 78 (129)
T ss_pred CcEEEEeeeeccCCHHHHHHHHHHHHhCC-EEEEEEeccHhHHhcC-CCCCCCHHHHHHHHHcCCccCEEecCCCccChH
Confidence 57899999999999999999999999984 7999999986433222 35788999998632 233
Q ss_pred --HHhcCCCEEEEeeCce
Q 034114 85 --IKVLGKWMHVLFFGSY 100 (103)
Q Consensus 85 --i~~~~~~~~V~G~d~~ 100 (103)
+++++++++|+|+||.
T Consensus 79 ~~~~~l~~~~vv~G~d~~ 96 (129)
T cd02171 79 EDIKKYNVDVFVMGDDWE 96 (129)
T ss_pred HHHHHhCCCEEEECCCCc
Confidence 3468999999999984
No 12
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=99.70 E-value=8.1e-17 Score=112.08 Aligned_cols=66 Identities=32% Similarity=0.659 Sum_probs=57.1
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+++|+++||||++|.||+.+|++|++++ +.++||+++|+.+++.++ +++.|+++|.++++.|++.+
T Consensus 1 ~~~v~~gGtFDplH~GH~~ll~~A~~~~-d~livgi~~d~~~~~~K~-~~i~~~e~R~~~v~~~~~~~ 66 (153)
T PRK00777 1 MMKVAVGGTFDPLHDGHRALLRKAFELG-KRVTIGLTSDEFAKSYKK-HKVRPYEVRLKNLKKFLKAV 66 (153)
T ss_pred CcEEEEecccCCCCHHHHHHHHHHHHcC-CEEEEEEcCCccccccCC-CCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999999999999999998 589999999987744333 68899999999999888753
No 13
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=99.69 E-value=7.7e-17 Score=112.56 Aligned_cols=83 Identities=27% Similarity=0.356 Sum_probs=58.2
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhc--CcEEEEEecCC----CCCcccccCCCCCHHHHHH-------------
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGP----MLTNKQFAELIQPVDERMR------------- 79 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~--~~viV~vt~d~----~l~~k~~~~~i~~f~~R~~------------- 79 (103)
+..+.+++.|+||++|.||++|+++|.+.+. +...+++|+++ ++.+......+.+.++|.+
T Consensus 3 ~~~~~~v~iG~FDGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~P~~~~~~~~~~~~l~s~~ek~~~l~~~Gvd~~~~~ 82 (157)
T PF06574_consen 3 NNKKSVVAIGNFDGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPHPKEVLNPDKPPKLLTSLEEKLELLESLGVDYVIVI 82 (157)
T ss_dssp T-S-EEEEES--TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-CHHHHSCTCCGGBSS-HHHHHHHHHHTTESEEEEE
T ss_pred CCCCcEEEEeCCCCccHHHHHHHHHHhhhhhhcccceEEEEcccCHHHHhcCCCcccCCCCHHHHHHHHHHcCCCEEEEe
Confidence 4567899999999999999999999999983 47899999985 2332333455788888864
Q ss_pred ---------HHHHHHH-----hcCCCEEEEeeCcee
Q 034114 80 ---------NVEAYIK-----VLGKWMHVLFFGSYF 101 (103)
Q Consensus 80 ---------~~~~fi~-----~~~~~~~V~G~d~~f 101 (103)
++++|++ ++++..+|+|+||+|
T Consensus 83 ~F~~~~~~ls~~~Fi~~iL~~~l~~~~ivvG~DfrF 118 (157)
T PF06574_consen 83 PFTEEFANLSPEDFIEKILKEKLNVKHIVVGEDFRF 118 (157)
T ss_dssp -CCCHHCCS-HHHHHHHHCCCHCTEEEEEEETT-EE
T ss_pred cchHHHHcCCHHHHHHHHHHhcCCccEEEEccCccC
Confidence 4688887 467899999999998
No 14
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.66 E-value=3e-16 Score=121.69 Aligned_cols=81 Identities=21% Similarity=0.151 Sum_probs=68.4
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHH------------------H
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRN------------------V 81 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~------------------~ 81 (103)
+..+|++.|+||++|.||+++|++|+++| +.++||+++|+.+...+. .++.+.++|.+. .
T Consensus 10 ~~~~v~~~G~FD~vH~GH~~~L~qAk~~g-~~Livgv~~d~~i~~~K~-~pi~~~eeR~~~l~~~~~VD~Vv~~~p~~~~ 87 (353)
T PTZ00308 10 GTIRVWVDGCFDMLHFGHANALRQARALG-DELFVGCHSDEEIMRNKG-PPVMHQEERYEALRACKWVDEVVEGYPYTTR 87 (353)
T ss_pred CcEEEEEEeecccCCHHHHHHHHHHHHhC-CEEEEEeCCHHHHhhcCC-CCCCCHHHHHHHHHhcCCccEEEECCCCCch
Confidence 45789999999999999999999999999 489999999976643222 469999999852 2
Q ss_pred HHHHHhcCCCEEEEeeCceee
Q 034114 82 EAYIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 82 ~~fi~~~~~~~~V~G~d~~f~ 102 (103)
.+|+++++|+++|+|+||+|.
T Consensus 88 ~~fI~~l~~d~vv~GdD~~~g 108 (353)
T PTZ00308 88 LEDLERLECDFVVHGDDISVD 108 (353)
T ss_pred HHHHHHhCCCEEEECCCCCCC
Confidence 468889999999999999985
No 15
>TIGR01518 g3p_cytidyltrns glycerol-3-phosphate cytidylyltransferase. Glycerol-3-phosphate cytidyltransferase acts in pathways of teichoic acid biosynthesis. Teichoic acids are substituted polymers, linked by phosphodiester bonds, of glycerol, ribitol, etc. An example is poly(glycerol phosphate), the major teichoic acid of the Bacillus subtilis cell wall. Most but not all species encoding proteins in this family are Gram-positive bacteria.
Probab=99.66 E-value=3.9e-16 Score=104.61 Aligned_cols=75 Identities=24% Similarity=0.207 Sum_probs=60.9
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH---------------H---HHH
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV---------------E---AYI 85 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~---------------~---~fi 85 (103)
|++.|+||++|.||+.+|++|++++ +.++|++++|+....+ +..++.|.++|.+.+ + +++
T Consensus 1 v~~~G~FDg~H~GH~~~l~~a~~~~-~~~iv~v~~d~~~~~~-~~~~i~~~eeR~~~l~~~~~Vd~vi~~~~~~~f~~~l 78 (125)
T TIGR01518 1 VLTYGTFDLLHWGHINLLERAKQLG-DYLIVALSTDEFNLQK-QKKAYHSYEHRKLILETIRYVDLVIPEKSWEQKKQDI 78 (125)
T ss_pred CEEcceeCCCCHHHHHHHHHHHHcC-CEEEEEEechHHHhhc-CCCCCCCHHHHHHHHHcCCCccEEecCCCccchHHHH
Confidence 5788999999999999999999998 5899999999865433 245788999997521 2 335
Q ss_pred HhcCCCEEEEeeCce
Q 034114 86 KVLGKWMHVLFFGSY 100 (103)
Q Consensus 86 ~~~~~~~~V~G~d~~ 100 (103)
+.++++++|+|+||.
T Consensus 79 ~~~~~~~vv~G~D~~ 93 (125)
T TIGR01518 79 IDFNIDVFVMGDDWE 93 (125)
T ss_pred HHcCCCEEEECCCcc
Confidence 678999999999984
No 16
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=99.65 E-value=3.7e-16 Score=110.64 Aligned_cols=79 Identities=23% Similarity=0.319 Sum_probs=59.9
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhc--CcEEEEEecCCCC----CcccccCCCCCHHHHHH-----------------
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELAR--DRIVVGVCDGPML----TNKQFAELIQPVDERMR----------------- 79 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~--~~viV~vt~d~~l----~~k~~~~~i~~f~~R~~----------------- 79 (103)
.+++.|+||++|.||+.|+++|.++++ +..++++|+++.- ..+....++.|.++|.+
T Consensus 1 ~vv~iG~FDgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~p~~~~~~~~~~~~l~~~e~R~~~l~~l~vd~v~~~~f~~ 80 (180)
T cd02064 1 TVVAIGNFDGVHLGHQALIKTLKKIARERGLPSAVLTFDPHPREVFLPDKAPPRLTTLEEKLELLESLGVDYLLVLPFDK 80 (180)
T ss_pred CEEEEecCCccCHHHHHHHHHHHHHHHHcCCCeEEEEECCCHHHHhCCCCCCCcCCCHHHHHHHHHHcCCCEEEEeCCCH
Confidence 378999999999999999999999984 2678889988521 22222345667777753
Q ss_pred -----HHHHHHHhc----CCCEEEEeeCcee
Q 034114 80 -----NVEAYIKVL----GKWMHVLFFGSYF 101 (103)
Q Consensus 80 -----~~~~fi~~~----~~~~~V~G~d~~f 101 (103)
++++|++++ +++++|+|+||+|
T Consensus 81 ~~~~~s~~~Fi~~il~~~~~~~ivvG~Df~F 111 (180)
T cd02064 81 EFASLSAEEFVEDLLVKLNAKHVVVGFDFRF 111 (180)
T ss_pred HHHcCCHHHHHHHHHhhcCCeEEEEccCCCC
Confidence 356777643 7999999999998
No 17
>PTZ00308 ethanolamine-phosphate cytidylyltransferase; Provisional
Probab=99.65 E-value=7.6e-16 Score=119.46 Aligned_cols=80 Identities=28% Similarity=0.272 Sum_probs=68.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHHH------------------
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRN------------------ 80 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~~------------------ 80 (103)
..++|++.|+||++|.||+.+|++|++++ ++++|||++|+... .|....++++.++|.+.
T Consensus 191 ~~kiv~~~G~FDl~H~GHi~~L~~A~~lg-d~LIVgV~sD~~v~~~Kg~~~Pi~~~~eR~~~v~a~~~Vd~Vvi~~~~~~ 269 (353)
T PTZ00308 191 GDRIVYVDGSFDLFHIGHIRVLQKARELG-DYLIVGVHEDQVVNEQKGSNYPIMNLNERVLGVLSCRYVDEVVIGAPFDV 269 (353)
T ss_pred CCeEEEECCccCCCCHHHHHHHHHHHHhC-CEEEEEEcchHHhHhhcCCCCCCCCHHHHHHHHHhhCCCCeEEEcCCCCC
Confidence 45789999999999999999999999998 59999999997553 34334689999999852
Q ss_pred HHHHHHhcCCCEEEEeeCce
Q 034114 81 VEAYIKVLGKWMHVLFFGSY 100 (103)
Q Consensus 81 ~~~fi~~~~~~~~V~G~d~~ 100 (103)
..+|+++++|+++|.|.|+.
T Consensus 270 ~~~~i~~~~~d~vv~G~d~~ 289 (353)
T PTZ00308 270 TKEVIDSLHINVVVGGKFSD 289 (353)
T ss_pred hHHHHHHhCCCEEEECCCCc
Confidence 36889999999999999985
No 18
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.61 E-value=3.6e-15 Score=117.66 Aligned_cols=82 Identities=27% Similarity=0.351 Sum_probs=67.3
Q ss_pred CCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHHHH--------------
Q 034114 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRNV-------------- 81 (103)
Q Consensus 17 ~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~~~-------------- 81 (103)
...+..+|+++|+||++|.||..+|++|++++ +.++|||++|+.+. +|. .+++|+++|.+.+
T Consensus 49 ~~~~~~rV~~~G~FDllH~GH~~~L~qAk~lG-d~LIVGV~SDe~i~~~Kg--~PV~~~eER~~~v~alk~VD~Vv~~ap 125 (418)
T PLN02406 49 KKKKPVRVYMDGCFDMMHYGHANALRQARALG-DELVVGVVSDEEIIANKG--PPVTPMHERMIMVSGVKWVDEVIPDAP 125 (418)
T ss_pred cCCCceEEEEcCeeCCCCHHHHHHHHHHHHhC-CEEEEEEecChhhhccCC--CCcCCHHHHHHHHHhcCCCceEEeCCc
Confidence 34455689999999999999999999999999 59999999997663 342 5899999998633
Q ss_pred ----HHHH----HhcCCCEEEEeeCcee
Q 034114 82 ----EAYI----KVLGKWMHVLFFGSYF 101 (103)
Q Consensus 82 ----~~fi----~~~~~~~~V~G~d~~f 101 (103)
.+|+ ++++||++|+|.|+..
T Consensus 126 y~~~~d~~~~li~~~~~D~vVhGdD~~~ 153 (418)
T PLN02406 126 YAITEEFMNKLFNEYNIDYIIHGDDPCL 153 (418)
T ss_pred cccchHHHHHHHHHhCCCEEEECCCccc
Confidence 2343 4799999999999863
No 19
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=99.60 E-value=4.6e-15 Score=113.13 Aligned_cols=79 Identities=25% Similarity=0.387 Sum_probs=61.7
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCCC----CCcccccCCCCCHHHHHH-----------------
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGPM----LTNKQFAELIQPVDERMR----------------- 79 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~~----l~~k~~~~~i~~f~~R~~----------------- 79 (103)
.+++.|+||++|.||+.||++|.++|+. ..++++|+++. +..++...++.+.++|..
T Consensus 15 ~vv~iG~FDGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~p~~~~~~~~~~~~l~t~eeR~~~l~~~gVD~~~~~~F~~ 94 (305)
T PRK05627 15 CVLTIGNFDGVHRGHQALLARAREIARERGLPSVVMTFEPHPREVFAPDKAPARLTPLRDKAELLAELGVDYVLVLPFDE 94 (305)
T ss_pred EEEEEeeCCcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCCHHHHcCCCCCCcCCCCHHHHHHHHHHcCCCEEEEecCCH
Confidence 8999999999999999999999999842 45778999852 222222355777777653
Q ss_pred -----HHHHHHHh-----cCCCEEEEeeCcee
Q 034114 80 -----NVEAYIKV-----LGKWMHVLFFGSYF 101 (103)
Q Consensus 80 -----~~~~fi~~-----~~~~~~V~G~d~~f 101 (103)
++++|+++ ++++.+|+|+||+|
T Consensus 95 ~~~~ls~e~Fi~~~l~~~l~~~~iVvG~Df~F 126 (305)
T PRK05627 95 EFAKLSAEEFIEDLLVKGLNAKHVVVGFDFRF 126 (305)
T ss_pred HHhcCCHHHHHHHHHHhccCCCEEEECCCCCC
Confidence 36788874 78999999999998
No 20
>PLN02406 ethanolamine-phosphate cytidylyltransferase
Probab=99.60 E-value=4.3e-15 Score=117.22 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=71.0
Q ss_pred CCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHHH--------------
Q 034114 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMRN-------------- 80 (103)
Q Consensus 16 ~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~~-------------- 80 (103)
.|....++|++.|+||.+|.||+.+|++|+++| ++++|||++|+.+. .|....++++.++|...
T Consensus 246 ~p~~~~~iVyv~G~FDlfH~GHi~~L~~Ak~lG-d~LIVGV~sD~~v~~~KG~~~Pi~~~~ER~~~v~ack~VD~VVi~a 324 (418)
T PLN02406 246 GPGPDARIVYIDGAFDLFHAGHVEILRLARALG-DFLLVGIHTDQTVSAHRGAHRPIMNLHERSLSVLACRYVDEVIIGA 324 (418)
T ss_pred CCCCCCeEEEECCeeccCCHHHHHHHHHHHHhC-CEEEEEEeccHHHHHhcCCCCCCCCHHHHHHHHhccCcccEEEeCC
Confidence 455678899999999999999999999999998 59999999998663 34335789999999752
Q ss_pred ----HHHHHHhcCCCEEEEeeCc
Q 034114 81 ----VEAYIKVLGKWMHVLFFGS 99 (103)
Q Consensus 81 ----~~~fi~~~~~~~~V~G~d~ 99 (103)
.+++|++++||++|+|.|+
T Consensus 325 p~~~~~~~i~~~~~d~vvhG~~~ 347 (418)
T PLN02406 325 PWEVSKDMITTFNISLVVHGTVA 347 (418)
T ss_pred CCCCCHHHHHHhCCCEEEECCcC
Confidence 3688999999999999875
No 21
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=99.60 E-value=2.3e-15 Score=115.56 Aligned_cols=63 Identities=33% Similarity=0.665 Sum_probs=54.7
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+|+++||||.+|.||+.||++|.+++ +.++||+|+|+++++++ ..+ .|+++|.+.+++||++.
T Consensus 2 ~V~vgGTFD~lH~GH~~lL~~A~~~g-d~LiVgvt~D~~~~~~k-~~~-~~~e~R~~~v~~fl~~~ 64 (322)
T PRK01170 2 ITVVGGTFSKLHKGHKALLKKAIETG-DEVVIGLTSDEYVRKNK-VYP-IPYEDRKRKLENFIKKF 64 (322)
T ss_pred EEEEccccccCChHHHHHHHHHHHcC-CEEEEEEccHHHHHhcC-CCC-CCHHHHHHHHHHHHHhc
Confidence 68999999999999999999999988 59999999998775433 234 99999999999998643
No 22
>COG0669 CoaD Phosphopantetheine adenylyltransferase [Coenzyme metabolism]
Probab=99.59 E-value=5.2e-15 Score=103.18 Aligned_cols=70 Identities=26% Similarity=0.394 Sum_probs=61.0
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFG 98 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d 98 (103)
+++++++|||||++.||+.++++|..+. +.++|+|..+ +.| .++.+++||.+.+++.+..+ |++.|.+++
T Consensus 2 ~~iavypGSFDPiTnGHlDii~RA~~~F-d~viVaV~~n---p~K---~plFsleER~~l~~~~~~~l-~nV~V~~f~ 71 (159)
T COG0669 2 MKIAVYPGSFDPITNGHLDIIKRASALF-DEVIVAVAIN---PSK---KPLFSLEERVELIREATKHL-PNVEVVGFS 71 (159)
T ss_pred CeeEEeCCCCCCCccchHHHHHHHHHhc-cEEEEEEEeC---CCc---CCCcCHHHHHHHHHHHhcCC-CceEEEecc
Confidence 5789999999999999999999999999 5999999998 444 57899999999888887766 777777775
No 23
>PLN02413 choline-phosphate cytidylyltransferase
Probab=99.57 E-value=1.3e-14 Score=109.54 Aligned_cols=80 Identities=19% Similarity=0.264 Sum_probs=66.3
Q ss_pred CCCCccEEEEecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecCCCCCcccccCCCCCHHHHHHHH--------------
Q 034114 17 PDNSYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV-------------- 81 (103)
Q Consensus 17 ~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~-------------- 81 (103)
|..+..+|++.|+||.+|.||+.+|++|++++ .++++|||++|+.....+. .++++..+|.+.+
T Consensus 23 ~~~r~~rVyvdG~FDLfH~GHir~L~qAK~lg~~d~LIVGV~sDe~v~~~KG-rPIm~~~ER~e~V~acKyVDeVV~~aP 101 (294)
T PLN02413 23 PSDRPVRVYADGIYDLFHFGHARSLEQAKKLFPNTYLLVGCCNDELTHKYKG-KTVMTEDERYESLRHCKWVDEVIPDAP 101 (294)
T ss_pred CCCCceEEEEeCchhhCCHHHHHHHHHHHHhCCCCEEEEEecccHHHHhcCC-CCCCCHHHHHHHHHhcccccEEeeCCC
Confidence 34556789999999999999999999999997 3599999999986533222 4899999998522
Q ss_pred ----HHHHHhcCCCEEEEee
Q 034114 82 ----EAYIKVLGKWMHVLFF 97 (103)
Q Consensus 82 ----~~fi~~~~~~~~V~G~ 97 (103)
.+||++++||++|+|.
T Consensus 102 ~~~t~efI~~~kpDiVvhGd 121 (294)
T PLN02413 102 WVITQEFLDKHRIDYVAHDA 121 (294)
T ss_pred ccccHHHHHHhCCCEEEECC
Confidence 6899999999999995
No 24
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.55 E-value=1.3e-14 Score=114.72 Aligned_cols=82 Identities=24% Similarity=0.287 Sum_probs=69.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHH-----------------HH
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMR-----------------NV 81 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~-----------------~~ 81 (103)
..++|++.|+||++|.||+.+|++|++++ ++++||+++|+... .|....++.++++|.+ +.
T Consensus 339 ~~~iv~~~G~fD~~H~GH~~~l~~a~~~~-~~l~v~v~~d~~~~~~k~~~~pi~~~~~R~~~~~~~~~vd~v~~~~~~~~ 417 (473)
T PRK11316 339 GEKIVMTNGCFDILHAGHVSYLANARKLG-DRLIVAVNSDASVKRLKGEGRPVNPLEQRMAVLAALEAVDWVVPFEEDTP 417 (473)
T ss_pred CCeEEEEecccccCCHHHHHHHHHHHHhC-CeeEEEEeCchhHHHhCCCCCCCCCHHHHHHHHHhcCcCCEEEeCCCCCH
Confidence 35889999999999999999999999998 48999999997552 2332357999999975 24
Q ss_pred HHHHHhcCCCEEEEeeCceee
Q 034114 82 EAYIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 82 ~~fi~~~~~~~~V~G~d~~f~ 102 (103)
++|+++++||++|+|.||.|+
T Consensus 418 ~~~~~~~~~d~vv~G~d~~~~ 438 (473)
T PRK11316 418 QRLIAEILPDLLVKGGDYKPE 438 (473)
T ss_pred HHHHHHhCCCEEEECCCCCCC
Confidence 788989999999999999885
No 25
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.55 E-value=2.8e-14 Score=98.25 Aligned_cols=67 Identities=31% Similarity=0.457 Sum_probs=53.7
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
|++++++|||||+|.||+.++++|.+++ +.++|+++.+ +.| ..+.|+++|++++++.++.+ +++.|+
T Consensus 1 mkiai~~GSFDPih~GHl~ii~~A~~~~-D~v~v~v~~n---p~K---~~~~s~e~R~~~l~~~~~~~-~~v~v~ 67 (140)
T PRK13964 1 MKIAIYPGSFDPFHKGHLNILKKALKLF-DKVYVVVSIN---PDK---SNASDLDSRFKNVKNKLKDF-KNVEVL 67 (140)
T ss_pred CeEEEEeeeeCCCCHHHHHHHHHHHHhC-CEEEEEeccC---CCC---CCCCCHHHHHHHHHHHHcCC-CCcEEe
Confidence 4689999999999999999999999998 5899999887 333 25689999999887776654 444444
No 26
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=99.55 E-value=1.6e-14 Score=86.26 Aligned_cols=62 Identities=29% Similarity=0.430 Sum_probs=51.3
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
+++++|+|||+|.||+.++++|.++++ .+++++++++..++.++ .++.+.++|.++++++..
T Consensus 1 i~~~~G~Fdp~H~GH~~~l~~a~~~~~-~~vv~i~~~~~~~~~~~-~~~~~~~~R~~~~~~~~~ 62 (66)
T TIGR00125 1 RVIFVGTFDPFHLGHLDLLERAKELFD-ELIVGVGSDQFVNPLKG-EPVFSLEERLEMLKALKY 62 (66)
T ss_pred CEEEcCccCCCCHHHHHHHHHHHHhCC-EEEEEECchHhccccCC-CCCCCHHHHHHHHHHhcc
Confidence 478999999999999999999999995 88899988765543332 378999999998887753
No 27
>TIGR00083 ribF riboflavin kinase/FMN adenylyltransferase. multifunctional enzyme: riboflavin kinase (EC 2.7.1.26) (flavokinase) / FMN adenylyltransferase (EC 2.7.7.2) (FAD pyrophosphorylase) (FAD synthetase).
Probab=99.54 E-value=1.4e-14 Score=109.73 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=57.1
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCCC----CCcccccCCCCCHHHHH-------------------
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGPM----LTNKQFAELIQPVDERM------------------- 78 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~~----l~~k~~~~~i~~f~~R~------------------- 78 (103)
+++.|+||++|.||++||+++.+.|++ ...+++||++. +.+..... +.+.++|.
T Consensus 1 ~vaiG~FDGvH~GHq~Li~~~~~~a~~~~~~~~V~tF~phP~~~~~~~~~~~-l~~~~~k~~~l~~~Gvd~~~~~~F~~~ 79 (288)
T TIGR00083 1 SLAIGYFDGLHLGHQALLQELKQIAEEKGLPPAVLLFEPHPSEQFNWLTAPA-LTPLEDKARQLQIKGVEQLLVVVFDEE 79 (288)
T ss_pred CEEEEeCCccCHHHHHHHHHHHHHHHHhCCCEEEEEeCCChHHHhCccCCCC-CCCHHHHHHHHHHcCCCEEEEeCCCHH
Confidence 478999999999999999999998742 57899999852 32221122 55545443
Q ss_pred -H--HHHHHHH-----hcCCCEEEEeeCcee
Q 034114 79 -R--NVEAYIK-----VLGKWMHVLFFGSYF 101 (103)
Q Consensus 79 -~--~~~~fi~-----~~~~~~~V~G~d~~f 101 (103)
+ ++++|++ +++++.+|+|+||+|
T Consensus 80 ~a~ls~e~Fi~~~l~~~l~~~~ivvG~Df~F 110 (288)
T TIGR00083 80 FANLSALQFIDQLIVKHLHVKFLVVGDDFRF 110 (288)
T ss_pred HHcCCHHHHHHHHHHhccCCcEEEECCCccC
Confidence 3 3578876 367999999999998
No 28
>PRK07143 hypothetical protein; Provisional
Probab=99.54 E-value=3.2e-14 Score=107.45 Aligned_cols=84 Identities=17% Similarity=0.097 Sum_probs=59.8
Q ss_pred CCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHH----------------
Q 034114 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERM---------------- 78 (103)
Q Consensus 16 ~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~---------------- 78 (103)
......+.+++.|+||++|.||++||++|++.+ ...+++|++.... .+.....+.+.++|.
T Consensus 10 ~~~~~~~~vvaiG~FDGvH~GHq~Ll~~a~~~~--~~~vV~tF~~P~~~~~~~~~~l~~~~er~~~l~~~Gvd~~~~~~F 87 (279)
T PRK07143 10 KNFKFEKPTFVLGGFESFHLGHLELFKKAKESN--DEIVIVIFKNPENLPKNTNKKFSDLNSRLQTLANLGFKNIILLDF 87 (279)
T ss_pred CCCCCCCeEEEEccCCcCCHHHHHHHHHHHHCC--CcEEEEEeCChHHhcccCcccCCCHHHHHHHHHHCCCCEEEEeCC
Confidence 334456789999999999999999999999866 3556666653110 011123455555554
Q ss_pred ----H--HHHHHHHh---cCCCEEEEeeCcee
Q 034114 79 ----R--NVEAYIKV---LGKWMHVLFFGSYF 101 (103)
Q Consensus 79 ----~--~~~~fi~~---~~~~~~V~G~d~~f 101 (103)
+ ++++|++. ++++.+|+|+||+|
T Consensus 88 ~~~~a~ls~e~Fi~~ll~l~~~~iVvG~Df~F 119 (279)
T PRK07143 88 NEELQNLSGNDFIEKLTKNQVSFFVVGKDFRF 119 (279)
T ss_pred CHHHhCCCHHHHHHHHHhcCCCEEEECCCccc
Confidence 2 46888875 78999999999998
No 29
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=99.53 E-value=3.3e-14 Score=108.50 Aligned_cols=82 Identities=27% Similarity=0.366 Sum_probs=61.6
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCC----CCCcccccCCCCCHHHH----------------
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGP----MLTNKQFAELIQPVDER---------------- 77 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~----~l~~k~~~~~i~~f~~R---------------- 77 (103)
....+++.|+||++|.||++|+++|.+.+.. ...+++|+++ .+........+.|+.+|
T Consensus 14 ~~~~~l~IG~FDGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P~~~~~~~~~~~~Lt~~~~k~~~l~~~gvd~~~v~~ 93 (304)
T COG0196 14 LRGCVLTIGNFDGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHPRELLKPDKPPTRLTPLREKIRLLAGYGVDALVVLD 93 (304)
T ss_pred cCCcEEEEEcCCccchhHHHHHHHHHHHHHHhCCceEEEEecCCCHHHcCCCCCccccCCHHHHHHHHHhcCCcEEEEEe
Confidence 3678999999999999999999999988742 6688899984 22222222334455554
Q ss_pred ----HH--HHHHHHH----hcCCCEEEEeeCcee
Q 034114 78 ----MR--NVEAYIK----VLGKWMHVLFFGSYF 101 (103)
Q Consensus 78 ----~~--~~~~fi~----~~~~~~~V~G~d~~f 101 (103)
++ ++++|++ .++++.+|+|+||+|
T Consensus 94 F~~~fa~ls~~~Fv~~lv~~l~~k~ivvG~DF~F 127 (304)
T COG0196 94 FDLEFANLSAEEFVELLVEKLNVKHIVVGFDFRF 127 (304)
T ss_pred CCHhHhhCCHHHHHHHHHhccCCcEEEEeccccc
Confidence 43 3678887 778999999999998
No 30
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain. Cytidylyltransferase-like domain. Many of these proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=99.50 E-value=1.2e-13 Score=92.20 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=58.6
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHH-----------------
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI----------------- 85 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi----------------- 85 (103)
+++++|+|||+|.||+.++++|++.+.+.++|++.+++..... ...+.++++|.++++.+.
T Consensus 1 ~~~~~G~Fdp~H~GH~~ll~~a~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~R~~~l~~~~~~~~~v~~~~~~~~~~~ 78 (143)
T cd02039 1 VGIIIGRFEPFHLGHLKLIKEALEEALDEVIIIIVSNPPKKKR--NKDPFSLHERVEMLKEILKDRLKVVPVDFPEVKIL 78 (143)
T ss_pred CeEEeeccCCcCHHHHHHHHHHHHHcCCceEEEEcCCChhhcc--cccCCCHHHHHHHHHHhccCCcEEEEEecChhhcc
Confidence 4789999999999999999999999833788888877543211 245678888875433222
Q ss_pred ----------HhcCCCEEEEeeCceee
Q 034114 86 ----------KVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 86 ----------~~~~~~~~V~G~d~~f~ 102 (103)
..++++++|+|.|+.|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~v~G~d~~~~ 105 (143)
T cd02039 79 LAVVFILKILLKVGPDKVVVGEDFAFG 105 (143)
T ss_pred CHHHHHHHHHHHcCCcEEEECCccccC
Confidence 24578999999999875
No 31
>PRK00168 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=99.50 E-value=1.4e-13 Score=95.90 Aligned_cols=60 Identities=22% Similarity=0.419 Sum_probs=49.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
+++++++|||||+|.||+.++++|++.+ +.++++++.++ .| .++.|+++|+++++..++.
T Consensus 1 ~~igi~gGsFdP~H~GHl~~~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~~~ 60 (159)
T PRK00168 1 MKIAIYPGSFDPITNGHLDIIERASRLF-DEVIVAVAINP---SK---KPLFSLEERVELIREATAH 60 (159)
T ss_pred CcEEEEeeecCCCCHHHHHHHHHHHHHC-CEEEEEECCCC---CC---CCCCCHHHHHHHHHHHHcC
Confidence 4689999999999999999999999998 68999988763 22 3578999999877665543
No 32
>TIGR01510 coaD_prev_kdtB pantetheine-phosphate adenylyltransferase, bacterial. This model describes pantetheine-phosphate adenylyltransferase, the penultimate enzyme of coenzyme A (CoA) biosynthesis in bacteria. It does not show any strong homology to eukaryotic enzymes of coenzyme A biosynthesis. This protein was previously designated KdtB and postulated (because of cytidyltransferase homology and proximity to kdtA) to be an enzyme of LPS biosynthesis, a cytidyltransferase for 3-deoxy-D-manno-2-octulosonic acid. However, no activity toward that compound was found with either CTP or ATP. The phylogenetic distribution of this enzyme is more consistent with coenzyme A biosynthesis than with LPS biosynthesis.
Probab=99.41 E-value=1.4e-12 Score=90.57 Aligned_cols=64 Identities=27% Similarity=0.435 Sum_probs=49.5
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHV 94 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V 94 (103)
+++++|||||+|.||+.++++|.+.+ +.++++++.+ +.| ....|+++|+++++..++.. |.+.|
T Consensus 1 i~l~gGsFdP~H~GHl~l~~~a~~~~-d~v~~~~~~~---p~k---~~~~~~~~R~~m~~~a~~~~-~~~~v 64 (155)
T TIGR01510 1 IALYPGSFDPVTNGHLDIIKRAAALF-DEVIVAVAKN---PSK---KPLFSLEERVELIKDATKHL-PNVRV 64 (155)
T ss_pred CEEEEeecCCCcHHHHHHHHHHHHhC-CEEEEEEcCC---CCC---CCCcCHHHHHHHHHHHHhhC-CCeEE
Confidence 47899999999999999999999998 6899999854 222 24679999998876666432 44444
No 33
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.40 E-value=4.7e-13 Score=105.21 Aligned_cols=79 Identities=27% Similarity=0.320 Sum_probs=68.4
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCC-cccccCCCCCHHHHHH-----------------HHHH
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLT-NKQFAELIQPVDERMR-----------------NVEA 83 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~-~k~~~~~i~~f~~R~~-----------------~~~~ 83 (103)
++|++.|+||.+|.||..+|++|..+| +.++||+++|...+ -|...+|+.|.+.|.. .+++
T Consensus 333 ~vvfTNGcFDIlH~GHvsyL~~Ar~lg-d~Livg~NsDaSvkrLKG~~RPin~~~~Ra~vLa~L~~VD~vV~F~edTP~~ 411 (467)
T COG2870 333 KVVFTNGCFDILHAGHVTYLAQARALG-DRLIVGVNSDASVKRLKGESRPINSEEDRAAVLAALESVDLVVIFDEDTPEE 411 (467)
T ss_pred eEEEecchhhhccccHHHHHHHHHhhC-CeEEEEeccchhhhhhcCCCCCCCcHHHHHHHHhhcccceEEEEecCCCHHH
Confidence 389999999999999999999999999 59999999996542 2444578999999963 4688
Q ss_pred HHHhcCCCEEEEeeCcee
Q 034114 84 YIKVLGKWMHVLFFGSYF 101 (103)
Q Consensus 84 fi~~~~~~~~V~G~d~~f 101 (103)
.|+.++||+.|.|.||.-
T Consensus 412 LI~~~~PdilVKGgDy~~ 429 (467)
T COG2870 412 LIEAVKPDILVKGGDYKI 429 (467)
T ss_pred HHHHhCcceEEccCCCCh
Confidence 899999999999999974
No 34
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=99.39 E-value=2.2e-12 Score=90.08 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=54.0
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
+++++|+|||+|.||+.++++|++.+ +.++|++++.+..+.+ +...++++|+++++..++.. +.+.|.
T Consensus 1 igl~~G~F~P~H~GHl~li~~a~~~~-d~v~vi~~~~~~~~~~---~~~~~~~~R~~mi~~a~~~~-~~~~v~ 68 (158)
T cd02167 1 IGIVFGKFAPLHTGHVYLIYKALSQV-DELLIIVGSDDTRDDA---RTGLPLEKRLRWLREIFPDQ-ENIVVH 68 (158)
T ss_pred CEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCccccc---CCCCCHHHHHHHHHHHhcCC-CCEEEE
Confidence 36899999999999999999999998 6999999988644332 34578999999988888653 445443
No 35
>cd02163 PPAT Phosphopantetheine adenylyltransferase. Phosphopantetheine adenylyltransferase (PPAT). PPAT is an essential enzyme in bacteria, responsible for catalyzing the rate-limiting step in coenzyme A (CoA) biosynthesis. The dinucleotide-binding fold of PPAT is homologous to class I aminoacyl-tRNA synthetases. CoA has been shown to inhibit PPAT and competes with ATP, PhP, and dPCoA. PPAT is a homohexamer in E. coli.
Probab=99.37 E-value=3.1e-12 Score=88.68 Aligned_cols=56 Identities=25% Similarity=0.482 Sum_probs=46.1
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHH
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi 85 (103)
++++||||||+|.||+.++++|.+.+ +.++++++.++ .| ....++++|+++++..+
T Consensus 1 i~i~gGsFdP~H~GHl~l~~~a~~~~-d~v~v~~~~~~---~k---~~~~~~~~R~~ml~~a~ 56 (153)
T cd02163 1 IAVYPGSFDPITNGHLDIIERASKLF-DEVIVAVAVNP---SK---KPLFSLEERVELIREAT 56 (153)
T ss_pred CEEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC---CC---CCCCCHHHHHHHHHHHH
Confidence 37899999999999999999999998 68999998763 22 35788999998765544
No 36
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=99.37 E-value=1.6e-12 Score=87.16 Aligned_cols=61 Identities=30% Similarity=0.444 Sum_probs=42.6
Q ss_pred EEecccCCCCHHHHHHHHHHHHHhcC-cEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 25 VLGGTFDRLHDGHRLFLKASAELARD-RIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 25 ~~~GtFD~lH~GH~~ll~~a~~~~~~-~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+++|+|||+|.||+.++++|.+.++. .++++.+..+..+.+ ..+.|+++|+++++.++...
T Consensus 1 l~~GsFdP~H~GH~~~l~~a~~~~~~~~vi~v~~~~~~~k~~---~~~~~~~~R~~ml~~~~~~~ 62 (157)
T PF01467_consen 1 LFGGSFDPPHNGHLNLLREARELFDEDLVIVVPSDNSPHKDK---KPIFSFEERLEMLRAAFKDD 62 (157)
T ss_dssp EEEE--TT--HHHHHHHHHHHHHSSESEEEEEEEEHHCHSTT---SSSSTHHHHHHHHHHHHTTC
T ss_pred CeeeEcCcccHHHHHHHHHHHHhccccccccccccccccccc---cccCcHHHHHHHHHHHHhhc
Confidence 58999999999999999999999953 344444444333221 26899999999999999754
No 37
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=99.34 E-value=9.7e-13 Score=85.52 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=46.4
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHH
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA 83 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~ 83 (103)
+++++|+||++|.||+.++++|.+++ +.++++++.++..+.+ ..+.++++|.+.++.
T Consensus 1 ~~~~~G~Fdp~H~GH~~l~~~a~~~~-d~~i~~i~~~~~~~~~---~~~~~~~~R~~~l~~ 57 (105)
T cd02156 1 KARFPGEPGYLHIGHAKLICRAKGIA-DQCVVRIDDNPPVKVW---QDPHELEERKESIEE 57 (105)
T ss_pred CEEeCCCCCCCCHHHHHHHHHHHHhC-CcEEEEEcCCCccccc---CChHHHHHHHHHHHH
Confidence 47899999999999999999999998 5899999988665432 246888999875543
No 38
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.33 E-value=7.2e-12 Score=90.01 Aligned_cols=65 Identities=26% Similarity=0.332 Sum_probs=50.7
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
.++++++||+|||+|.||+.++++|.+... +.+++.++..+..+.. ..+.++++|+++++..++.
T Consensus 3 ~~~i~i~gGsFdP~H~GH~~l~~~a~~~~~~d~v~~~p~~~~~~k~~---~~~~~~~~R~~m~~~a~~~ 68 (203)
T PRK00071 3 MKRIGLFGGTFDPPHYGHLAIAEEAAERLGLDEVWFLPNPGPPHKPQ---KPLAPLEHRLAMLELAIAD 68 (203)
T ss_pred CcEEEEEeeCCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHhcC
Confidence 357899999999999999999999998653 4777888776544321 2467999999888777664
No 39
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=99.31 E-value=1.9e-11 Score=85.66 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=48.8
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+++++|+|||+|.||+.++++|++.+ +.+++++.++....+. ....++++|+++++..+...
T Consensus 1 ~~v~~G~FdP~H~GHl~~i~~a~~~~-d~l~v~v~s~~~~~~~---~~~~~~~~R~~mi~~~~~~~ 62 (163)
T cd02166 1 RALFIGRFQPFHLGHLKVIKWILEEV-DELIIGIGSAQESHTL---ENPFTAGERVLMIRRALEEE 62 (163)
T ss_pred CeEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEecCCCCCCCC---CCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999999998 6899988765322111 23367899999998887764
No 40
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=99.29 E-value=1.9e-11 Score=93.81 Aligned_cols=73 Identities=21% Similarity=0.219 Sum_probs=58.3
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCC-EEEEeeC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKW-MHVLFFG 98 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~-~~V~G~d 98 (103)
|++++++|+|||+|.||+.++++|.+++ +.++|+++..+..+++ ....|.++|+++++..++.. +. +.|.-++
T Consensus 1 ~~i~i~~GsFdP~H~GHl~ii~~a~~~~-d~v~v~~~~~~~~~~~---~~~~~~~~R~~~l~~~~~~~-~~~v~v~~~~ 74 (325)
T TIGR01526 1 KTIGVVFGKFYPLHTGHIYLIYEAFSKV-DELHIVVGSLFYDSKA---KRPPPVQDRLRWLREIFKYQ-KNQIFIHHLN 74 (325)
T ss_pred CcEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEECCCCcCccC---CCCCCHHHHHHHHHHHhccC-CCeEEEEEcC
Confidence 4588999999999999999999999998 6899999875433222 45679999999999988776 55 6665544
No 41
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=99.28 E-value=2.2e-11 Score=85.88 Aligned_cols=63 Identities=24% Similarity=0.301 Sum_probs=49.4
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLG 89 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~ 89 (103)
+++++|+|||+|.||+.++++|++.+ +.+++++.+++.-. + .....+.++|+++++..++..+
T Consensus 1 rgl~~G~FdP~H~GHl~ii~~a~~~~-D~lii~i~s~~~~~-k--~~~p~~~~eR~~mi~~al~~~~ 63 (165)
T TIGR01527 1 RGFYIGRFQPFHLGHLEVIKKIAEEV-DELIIGIGSAQESH-T--LENPFTAGERILMITQSLKEVG 63 (165)
T ss_pred CeEEEeccCCCCHHHHHHHHHHHHHC-CEEEEEEcCCCCCC-C--CCCCCCHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999998 68999887764321 1 1223466899999988887653
No 42
>COG1057 NadD Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=99.28 E-value=2e-11 Score=88.25 Aligned_cols=64 Identities=22% Similarity=0.348 Sum_probs=51.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
.++++++||||||+|.||+.++++|.+..+ +.|+..++..+..+++ ..+.|..+|+++++..++
T Consensus 2 ~~~i~lfGGsFdP~H~GHl~ia~~~~~~l~ld~vi~~ps~~~p~k~~---~~~a~~~~R~~Ml~la~~ 66 (197)
T COG1057 2 MKKIALFGGSFDPPHYGHLLIAEEALDQLGLDKVIFLPSPVPPHKKK---KELASAEHRLAMLELAIE 66 (197)
T ss_pred CceEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEecCCCCCCCCC---ccCCCHHHHHHHHHHHHh
Confidence 467899999999999999999999998763 5888888888766442 357888899876655554
No 43
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.28 E-value=1.2e-11 Score=94.50 Aligned_cols=80 Identities=26% Similarity=0.265 Sum_probs=67.3
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCC-CcccccCCCCCHHHHHHHH----------------
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML-TNKQFAELIQPVDERMRNV---------------- 81 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l-~~k~~~~~i~~f~~R~~~~---------------- 81 (103)
++..+|++.|+||.+|.||.+.|.+|++++ ++++|||.+|+-+ .+|. .|+++.+||+.++
T Consensus 6 ~~~~rVw~DGCfDm~HyGHanaLrQAkalG-dkLivGVHsDeeI~~nKG--pPV~t~eERy~~v~~ikWVDEVV~~APyv 82 (358)
T KOG2803|consen 6 NRPVRVWADGCFDMVHYGHANALRQAKALG-DKLIVGVHSDEEITLNKG--PPVFTDEERYEMVKAIKWVDEVVEGAPYV 82 (358)
T ss_pred CCceeEEeccchhhhhhhhhHHHHHHHHhC-CeEEEEecchHHHHhcCC--CCcccHHHHHHHHhhcchhhhhhcCCCee
Confidence 444579999999999999999999999999 5999999999755 4443 6889999998643
Q ss_pred --HHHHHhcCCCEEEEeeCcee
Q 034114 82 --EAYIKVLGKWMHVLFFGSYF 101 (103)
Q Consensus 82 --~~fi~~~~~~~~V~G~d~~f 101 (103)
.+++++++.+++|+|.|-.-
T Consensus 83 tt~~~md~y~cd~vvHGdDit~ 104 (358)
T KOG2803|consen 83 TTLEWMDKYGCDYVVHGDDITL 104 (358)
T ss_pred ccHHHHHHhCCeEEEeCCccee
Confidence 57777899999999999543
No 44
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.26 E-value=2.5e-11 Score=85.84 Aligned_cols=68 Identities=18% Similarity=0.215 Sum_probs=51.6
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcC-CCEEEE
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLG-KWMHVL 95 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~-~~~~V~ 95 (103)
++++++||||||+|.||+.+++++ ... +.++++++.... .+ +...|+++|+++++..++..+ +.+.|.
T Consensus 2 ~~i~ifGGSFDP~H~GHl~ia~~~-~~~-d~v~~vP~~~~~--~~---k~~~~~~~R~~M~~~ai~~~~~~~~~v~ 70 (174)
T PRK08887 2 KKIAVFGSAFNPPSLGHKSVIESL-SHF-DLVLLVPSIAHA--WG---KTMLDYETRCQLVDAFIQDLGLSNVQRS 70 (174)
T ss_pred CeEEEeCCCCCCCCHHHHHHHHHh-hcC-CEEEEEECCCCc--cc---CCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 358899999999999999999985 333 588888887421 12 145699999999998888763 666664
No 45
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=99.23 E-value=1.3e-10 Score=86.37 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=53.1
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
..++++++||||||+|.||+.++++|.+... +.++++++.++..+ ....+++.|+++++..++..
T Consensus 20 ~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~ld~v~~iP~~~pp~K-----~~~~~~~~Rl~M~~lAi~~~ 85 (243)
T PRK06973 20 RPRRIGILGGTFDPIHDGHLALARRFADVLDLTELVLIPAGQPWQK-----ADVSAAEHRLAMTRAAAASL 85 (243)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHHcCCCEEEEEECCcCCCC-----CCCCCHHHHHHHHHHHHHhc
Confidence 4567899999999999999999999998763 58888898875543 23569999999998888754
No 46
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=99.23 E-value=6.5e-11 Score=93.17 Aligned_cols=76 Identities=18% Similarity=0.251 Sum_probs=57.0
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC-----CCcccccCCCCCHHHHHHHHHHHHHhcCCCEE
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM-----LTNKQFAELIQPVDERMRNVEAYIKVLGKWMH 93 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~-----l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~ 93 (103)
..+++++++|+|||+|.||+.+|++|...++ .++|+|.+++. +++. +.....++++|++.+++.+... +++.
T Consensus 50 ~~~~~~v~~G~FdP~H~GH~~lI~~A~~~~d-~l~v~v~~~~~~~~~~~~~~-~~~~~~s~~~R~~~l~~~~~~~-~~v~ 126 (399)
T PRK08099 50 QMKKIGVVFGKFYPLHTGHIYLIQRACSQVD-ELHIIICYDDERDRKLFEDS-AMSQQPTVSDRLRWLLQTFKYQ-KNIK 126 (399)
T ss_pred hcCcEEEEEEecCCCCHHHHHHHHHHHHHCC-eeEEEEEccCCcchhhcccc-cccCCCCHHHHHHHHHHHhCCC-CCEE
Confidence 3457999999999999999999999999984 77777766532 2221 2245688999999888877654 4677
Q ss_pred EEee
Q 034114 94 VLFF 97 (103)
Q Consensus 94 V~G~ 97 (103)
|+.+
T Consensus 127 v~~~ 130 (399)
T PRK08099 127 IHAF 130 (399)
T ss_pred EEec
Confidence 7643
No 47
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=99.23 E-value=8e-11 Score=83.94 Aligned_cols=60 Identities=22% Similarity=0.286 Sum_probs=48.1
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
++++|+|||+|.||+.++++|++.++ .++|++++.+..+.+ ....++++|+++++..+..
T Consensus 2 ~l~~GrF~P~H~GHl~~i~~a~~~~~-~vii~i~s~~~~~~~---~~p~~~~eR~~mi~~~~~~ 61 (181)
T cd02168 2 LVYIGRFQPFHNGHLAVVLIALEKAK-KVIILIGSARTARNI---KNPWTSEEREVMIEAALSD 61 (181)
T ss_pred eEEeeccCCCCHHHHHHHHHHHHHCC-eEEEEeCCCCCCCCC---CCCcCHHHHHHHHHHHHhc
Confidence 68999999999999999999999995 899999776443322 2346889999888776654
No 48
>cd02165 NMNAT Nicotinamide/nicotinate mononucleotide adenylyltransferase. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis.
Probab=99.22 E-value=7e-11 Score=84.08 Aligned_cols=68 Identities=21% Similarity=0.271 Sum_probs=52.0
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
++++||||||+|.||+.++++|.+.+. +.++++++.++..+. ....++++|+++++..++. .+.+.|.
T Consensus 1 i~i~gGsFdP~H~GH~~~~~~a~~~~~~d~v~~~~~~~~~~k~----~~~~~~~~R~~m~~~~~~~-~~~i~v~ 69 (192)
T cd02165 1 IALFGGSFDPPHLGHLAIAEEALEELGLDRVLLLPSANPPHKP----PKPASFEHRLEMLKLAIED-NPKFEVS 69 (192)
T ss_pred CeEEeeCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCC----CCCCCHHHHHHHHHHHHcC-CCCEEEe
Confidence 478999999999999999999999872 478888887644321 3567999999988877763 2445443
No 49
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=99.19 E-value=1.6e-10 Score=82.00 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=47.8
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecC-CCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG-PMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d-~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
+++++|+|||+|.||+.++++|++.+ +.+++++.+. +..+. ....++++|+++++..+...
T Consensus 2 ~gl~~G~F~P~H~GHl~~i~~a~~~~-d~v~v~i~s~~~~~~~----~~p~~~~~R~~mi~~a~~~~ 63 (174)
T PRK01153 2 RALFIGRFQPFHKGHLEVIKWILEEV-DELIIGIGSAQESHTL----KNPFTAGERILMIRKALEEE 63 (174)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHhC-CEEEEEecCCCCCCCC----CCCCCHHHHHHHHHHHHhcC
Confidence 68999999999999999999999987 5888888654 22222 22357889999998888644
No 50
>KOG2803 consensus Choline phosphate cytidylyltransferase/Predicted CDP-ethanolamine synthase [Lipid transport and metabolism]
Probab=99.19 E-value=1.1e-10 Score=89.42 Aligned_cols=81 Identities=25% Similarity=0.341 Sum_probs=67.5
Q ss_pred CCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccc-cCCCCCHHHHHHHH-------------
Q 034114 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQF-AELIQPVDERMRNV------------- 81 (103)
Q Consensus 16 ~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~-~~~i~~f~~R~~~~------------- 81 (103)
.|...-++|++.|.||++|.||+..|+.|++++ ++++||+.+|+..+.++. ..|+++..||.-++
T Consensus 193 ~p~p~~kvVYvdGaFDLFH~GHl~~Le~ak~lg-dyLIvGI~~D~~vneykgs~~PiMnl~ER~LsvlackyVdeVvvGa 271 (358)
T KOG2803|consen 193 EPKPTDKVVYVDGAFDLFHAGHLDFLEKAKRLG-DYLIVGIHTDQTVNEYKGSNYPIMNLHERVLSVLACKYVDEVVVGA 271 (358)
T ss_pred CCCCCCcEEEEcCchhhhccchHHHHHHHHhcc-CceEEEeecCcchhhhccCCCccchHHHHHHHHhhhcccceEEEcC
Confidence 444567899999999999999999999999999 599999999987654443 35899999997432
Q ss_pred -----HHHHHhcCCCEEEEee
Q 034114 82 -----EAYIKVLGKWMHVLFF 97 (103)
Q Consensus 82 -----~~fi~~~~~~~~V~G~ 97 (103)
.+|++.++.+.+++|+
T Consensus 272 P~~v~s~~i~~~~~~~v~~g~ 292 (358)
T KOG2803|consen 272 PYEVTSEFIKLFNIDKVAHGT 292 (358)
T ss_pred chhccHHHHHhcCceEEEEec
Confidence 5788888899999998
No 51
>TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase. This model represents the predominant bacterial/eukaryotic adenylyltransferase for nicotinamide-nucleotide, its deamido form nicotinate nucleotide, or both. The first activity, nicotinamide-nucleotide adenylyltransferase (EC 2.7.7.1), synthesizes NAD by the salvage pathway, while the second, nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) synthesizes the immediate precursor of NAD by the de novo pathway. In E. coli, NadD activity is biased toward the de novo pathway while salvage activity is channeled through the multifunctional NadR protein, but this division of labor may be exceptional. The given name of this model, nicotinate (nicotinamide) nucleotide adenylyltransferase, reflects the lack of absolute specificity with respect to substrate amidation state in most species.
Probab=99.18 E-value=1e-10 Score=83.57 Aligned_cols=60 Identities=20% Similarity=0.355 Sum_probs=47.5
Q ss_pred EEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 25 VLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 25 ~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
++||||||+|.||+.++++|.+... +.++++++.++..+.+ ....++++|+++++..++.
T Consensus 1 i~gGsFdP~H~GHl~l~~~a~~~~~~d~v~~~p~~~~p~k~~---~~~~~~~~R~~m~~~a~~~ 61 (193)
T TIGR00482 1 LFGGSFDPIHYGHLLLAEEALDHLDLDKVIFVPTANPPHKKT---YEAASSHHRLAMLKLAIED 61 (193)
T ss_pred CccccCCccCHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHhc
Confidence 4799999999999999999999863 5788888888655432 2346999999888777664
No 52
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=99.18 E-value=1.7e-10 Score=88.87 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=49.4
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
|+++++||||||+|.||+.++++|.+.. -+.++++++.++..+.. ....++++|+++++..++.
T Consensus 1 m~i~i~gGsFdP~H~GHl~la~~a~~~~~~d~v~~~p~~~~p~K~~---~~~~~~~~R~~m~~~a~~~ 65 (342)
T PRK07152 1 MKIAIFGGSFDPIHKGHINIAKKAIKKLKLDKLFFVPTYINPFKKK---QKASNGEHRLNMLKLALKN 65 (342)
T ss_pred CeEEEEeeCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCCCCCCCC---CCCCCHHHHHHHHHHHHhh
Confidence 4689999999999999999999999874 25899999887655322 3345668899877666653
No 53
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.15 E-value=3e-10 Score=87.61 Aligned_cols=64 Identities=19% Similarity=0.329 Sum_probs=51.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
.+++++++|+|||+|.||+.++++|++.+ +.++|++++......+ +...++++|+++++..++.
T Consensus 5 ~~~~~~~~G~F~P~H~GHl~~i~~a~~~~-d~l~v~i~s~~~~~~~---~~~~~~~~R~~mi~~~~~~ 68 (340)
T PRK05379 5 RYDYLVFIGRFQPFHNGHLAVIREALSRA-KKVIVLIGSADLARSI---KNPFSFEERAQMIRAALAG 68 (340)
T ss_pred cceEEEEeeccCCCCHHHHHHHHHHHHHC-CEEEEEEccCCCCCcC---CCCCCHHHHHHHHHHHhhc
Confidence 57899999999999999999999999999 6999999865332222 1237889999887777663
No 54
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.14 E-value=3e-10 Score=86.52 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=30.5
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEE
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGV 56 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~v 56 (103)
+..+++.+.|+|||+|.||+.++++|.+.++ .+.|.+
T Consensus 112 ~~~~~~~~~~~FDPiH~GHl~ii~~a~~~~d-~~~V~i 148 (297)
T cd02169 112 PGKKIAAIVMNANPFTLGHRYLVEKAAAEND-WVHLFV 148 (297)
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHhhCC-eEEEEE
Confidence 4468899999999999999999999999984 344443
No 55
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.11 E-value=3.8e-10 Score=87.12 Aligned_cols=69 Identities=19% Similarity=0.142 Sum_probs=56.9
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeC
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFG 98 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d 98 (103)
+.++++++|+|||+|.||+.++++|.+++ +.+.|+|..+ + ..+.|+++|++++++-+..+ +++.|+.++
T Consensus 138 ~~~i~~~~g~fdP~t~GH~~li~~A~~~~-d~~~v~v~~~-----~---~~~f~~~~R~~~v~~~~~~~-~nv~v~~~~ 206 (332)
T TIGR00124 138 GNKIGSIVMNANPFTNGHRYLIEQAARQC-DWLHLFVVKE-----D---ASLFSYDERFALVKQGIQDL-SNVTVHNGS 206 (332)
T ss_pred CCcEEEEEeCcCCCchHHHHHHHHHHHHC-CEEEEEEEeC-----C---CCCCCHHHHHHHHHHHhcCC-CCEEEEecC
Confidence 35889999999999999999999999999 4777777532 1 34799999999999999887 677776553
No 56
>PLN02945 nicotinamide-nucleotide adenylyltransferase/nicotinate-nucleotide adenylyltransferase
Probab=98.96 E-value=5e-09 Score=77.25 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=45.4
Q ss_pred CCCCCCccEEEEecccCCCCHHHHHHHHHHHHHhc-Cc-EEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 15 ISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DR-IVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 15 ~~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~-viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
..+.....+.++||||||+|.||+.+++.|.+... +. .+|++-+.+.-.+..+ ....++++|+++++..++
T Consensus 16 ~~~~~~~~v~i~GGSFdP~H~gHl~ia~~a~~~l~~d~~~~v~~~~~P~~~~~~k-~~~~~~~~Rl~Ml~lai~ 88 (236)
T PLN02945 16 STGPRTRVVLVATGSFNPPTYMHLRMFELARDALMSEGYHVLGGYMSPVNDAYKK-KGLASAEHRIQMCQLACE 88 (236)
T ss_pred CccCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHhhcCcEEEEEEECCCCccccc-CCCCCHHHHHHHHHHHhc
Confidence 34455667889999999999999999999888642 23 3333333322111111 245688999887655544
No 57
>cd09286 NMNAT_Eukarya Nicotinamide/nicotinate mononucleotide adenylyltransferase, Eukaryotic. Nicotinamide/nicotinate mononucleotide (NMN/ NaMN)adenylyltransferase (NMNAT). NMNAT represents the primary bacterial and eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. It is an indispensable enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. Human NMNAT displays unique dual substrate specificity toward both NMN and NaMN, and can participate in both de novo and salvage pathways of NAD synthesis. This subfamily consists strictly of eukaryotic members and includes secondary structural elements not found in all NMNATs.
Probab=98.80 E-value=2.4e-08 Score=73.34 Aligned_cols=67 Identities=13% Similarity=0.245 Sum_probs=46.5
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhc-Cc-E-EE----EEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELAR-DR-I-VV----GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~-v-iV----~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
+.+++|||||+|.||+.+++.|.+..+ +. + ++ ..+.++.. | ....++++|+++++..++.. +.+.|.
T Consensus 2 ~~~~gGSFdPiH~gHl~ia~~a~~~l~~~~~~~~v~~~~~P~~~~~~--k---~~~~~~~~Rl~Ml~lai~~~-~~~~v~ 75 (225)
T cd09286 2 VLLACGSFNPITNMHLRMFELARDHLHETGRYEVVGGIISPVNDAYG--K---KGLASAKHRVAMCRLAVQSS-DWIRVD 75 (225)
T ss_pred EEEeCcCcCCCcHHHHHHHHHHHHHHHhhcCceeEEEEEEeeccCCC--C---CCCCCHHHHHHHHHHHHccC-CCEEEE
Confidence 468999999999999999999988753 22 2 21 22333211 1 34568999999999888754 555554
No 58
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=98.77 E-value=3.3e-08 Score=71.53 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=48.9
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
.++.++++|-|.|+|.||+.+|++|++.+ +.++|++++...-... +.-.++.||..++...+.
T Consensus 3 ~yd~~v~iGRFQPfH~GHl~~I~~al~~~-devII~IGSA~~s~t~---~NPFTa~ER~~MI~~aL~ 65 (196)
T PRK13793 3 TFDYLVFIGRFQPFHLAHMQTIEIALQQS-RYVILALGSAQMERNI---KNPFLAIEREQMILSNFS 65 (196)
T ss_pred ceeEEEEEecCCCCcHHHHHHHHHHHHhC-CEEEEEEccCCCCCCC---CCCCCHHHHHHHHHHhcc
Confidence 46789999999999999999999999999 5999999986332111 112566788887766663
No 59
>KOG2804 consensus Phosphorylcholine transferase/cholinephosphate cytidylyltransferase [Lipid transport and metabolism]
Probab=98.76 E-value=2.6e-08 Score=76.08 Aligned_cols=75 Identities=20% Similarity=0.306 Sum_probs=59.5
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcC-cEEEEEecCCCC-CcccccCCCCCHHHHHHHH---------------
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARD-RIVVGVCDGPML-TNKQFAELIQPVDERMRNV--------------- 81 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~-~viV~vt~d~~l-~~k~~~~~i~~f~~R~~~~--------------- 81 (103)
.+.-+|++.|.||++|.||..-|++|+....+ +++||+++|++- +-| -..+++-.+|++.+
T Consensus 61 ~RPVRVYADGIyDLFH~GHarqL~QaK~~FPNvyLiVGvc~De~Thk~K--G~TVm~e~ERyE~lrHCryVDEVi~~APW 138 (348)
T KOG2804|consen 61 DRPVRVYADGIYDLFHYGHARQLEQAKKLFPNVYLIVGVCSDELTHKFK--GRTVMNENERYEALRHCRYVDEVIPNAPW 138 (348)
T ss_pred CCceEEEccchHHHhhhhHHHHHHHHHHhCCCeEEEEeecCchhhhhcc--CceecChHHHHHHhhhhhhhhhhccCCCc
Confidence 44557999999999999999999999998855 999999999763 333 35678888888632
Q ss_pred ---HHHHHhcCCCEEEE
Q 034114 82 ---EAYIKVLGKWMHVL 95 (103)
Q Consensus 82 ---~~fi~~~~~~~~V~ 95 (103)
.+||++.+.|++.+
T Consensus 139 ~lt~EFL~~HKIDfVAH 155 (348)
T KOG2804|consen 139 TLTPEFLEKHKIDFVAH 155 (348)
T ss_pred cccHHHHHhcccceeec
Confidence 58888877777654
No 60
>COG1056 NadR Nicotinamide mononucleotide adenylyltransferase [Coenzyme metabolism]
Probab=98.70 E-value=1.1e-07 Score=67.55 Aligned_cols=77 Identities=17% Similarity=0.183 Sum_probs=55.4
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCC---EEEEe
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKW---MHVLF 96 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~---~~V~G 96 (103)
+++++++.|.|-|+|.||+.++++|++.. +.++|++.++..-...+ .+ .+.-+|..++++-+++.+.+ +.+--
T Consensus 2 ~~~rgv~~GRFqP~H~GHl~vi~~al~~v-DeliI~iGSa~~~~t~~--nP-fTagER~~mi~~~L~~~~~~~r~~~~~v 77 (172)
T COG1056 2 RMKRGVYFGRFQPLHTGHLYVIKRALSKV-DELIIVIGSAQESHTLK--NP-FTAGERIPMIRDRLREAGLDLRVYLRPV 77 (172)
T ss_pred CceEEEEEeccCCccHhHHHHHHHHHHhC-CEEEEEEccCccccccc--CC-CCccchhHHHHHHHHhcCCCceEEEEec
Confidence 57889999999999999999999999998 58999999874221110 11 23358888888888765554 44444
Q ss_pred eCce
Q 034114 97 FGSY 100 (103)
Q Consensus 97 ~d~~ 100 (103)
+|+.
T Consensus 78 ~d~~ 81 (172)
T COG1056 78 FDIE 81 (172)
T ss_pred Cccc
Confidence 4443
No 61
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=98.63 E-value=2.1e-07 Score=66.49 Aligned_cols=62 Identities=19% Similarity=0.103 Sum_probs=47.6
Q ss_pred ecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeC
Q 034114 27 GGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFG 98 (103)
Q Consensus 27 ~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d 98 (103)
.-+|||+|.||+.++++|.+.++ .+.|++... + ....|+++|+++++..++.. +.+.|+.++
T Consensus 5 ~~~~DPiH~GHl~i~~~a~~~~d-~~~V~v~p~-----~---~~~~s~e~R~~Mi~~a~~~~-~~v~v~~~~ 66 (182)
T smart00764 5 VMNANPFTLGHRYLVEQAAAECD-WVHLFVVSE-----D---ASLFSFDERFALVKKGTKDL-DNVTVHSGS 66 (182)
T ss_pred EECCCCCCHHHHHHHHHHHHHCC-ceEEEEEeC-----C---CCCCCHHHHHHHHHHHhccC-CCEEEEecC
Confidence 45899999999999999999984 555555432 1 23569999999999999865 677776553
No 62
>PRK13670 hypothetical protein; Provisional
Probab=98.41 E-value=9.8e-07 Score=69.53 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=49.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHH--------------------
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMR-------------------- 79 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~-------------------- 79 (103)
|+++-..--|||+|.||+.+|+++++.+. +..++++ +..++.... +. +.+..+|.+
T Consensus 1 Mk~~GIIaEfdg~H~GH~~~i~~a~~~a~~~~~~~Vm-p~~f~qrg~-p~-i~~~~~R~~~a~~~GvD~vielpf~~a~~ 77 (388)
T PRK13670 1 MKVTGIIVEYNPFHNGHLYHLNQAKKLTNADVTIAVM-SGNFVQRGE-PA-IVDKWTRAKMALENGVDLVVELPFLYSVQ 77 (388)
T ss_pred CceeEEEeeeCCcCHHHHHHHHHHHHHHhCCCcEEEe-cHHHhCCCC-CC-CCCHHHHHHHHHHcCCCEEEEeCCchHhC
Confidence 34555666899999999999999999874 3445555 433333221 22 545445432
Q ss_pred HHHHHHH-------hcCCCEEEEeeC
Q 034114 80 NVEAYIK-------VLGKWMHVLFFG 98 (103)
Q Consensus 80 ~~~~fi~-------~~~~~~~V~G~d 98 (103)
++++|++ .++.+.+|+|+|
T Consensus 78 sae~F~~~aV~iL~~l~v~~lv~G~e 103 (388)
T PRK13670 78 SADFFAEGAVSILDALGVDSLVFGSE 103 (388)
T ss_pred CHHHHHHhHHHHHHHcCCCEEEEcCC
Confidence 4566665 368999999998
No 63
>PRK13671 hypothetical protein; Provisional
Probab=98.17 E-value=8.3e-06 Score=62.43 Aligned_cols=71 Identities=10% Similarity=0.086 Sum_probs=50.7
Q ss_pred EecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecCCCCCcccccCCCCCHHHHHHHH--------------------H--
Q 034114 26 LGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV--------------------E-- 82 (103)
Q Consensus 26 ~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~--------------------~-- 82 (103)
..-+|||+|.||+.+++++++.. .+.++++++.++..+.+ ..+.+..+|.+++ +
T Consensus 5 IIaeFNP~H~GHl~~~~~a~~~~~~d~vi~vpSg~~~qrg~---pa~~~~~~R~~ma~~~G~DLViELP~~~a~~sAe~F 81 (298)
T PRK13671 5 IIAEYNPFHNGHIYQINYIKNKFPNEKIIVILSGKYTQRGE---IAVASFEKRKKIALKYGVDKVIKLPFEYATQAAHIF 81 (298)
T ss_pred EEeeeCCccHHHHHHHHHHHHhcCCCEEEEEECcCCCCCCC---CCCCCHHHHHHHHHHcCCCEEEeccHHHHhhchHHH
Confidence 44699999999999999999974 35888888888655432 3445777776532 2
Q ss_pred -----HHHHhcCCCEEEEeeCc
Q 034114 83 -----AYIKVLGKWMHVLFFGS 99 (103)
Q Consensus 83 -----~fi~~~~~~~~V~G~d~ 99 (103)
..+..++.|.++.|...
T Consensus 82 A~gaV~lL~~lgvd~l~FGsE~ 103 (298)
T PRK13671 82 AKGAIKKLNKEKIDKLIFGSES 103 (298)
T ss_pred HHHHHHHHHHcCCCEEEECCCC
Confidence 33446778888888753
No 64
>PF08218 Citrate_ly_lig: Citrate lyase ligase C-terminal domain; InterPro: IPR013166 [Citrate (pro-3S)-lyase] ligase (6.2.1.22 from EC), also known as citrate lyase ligase, is responsible for acetylation of the prosthetic group (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase. It converts the inactive thiol form of the enzyme to the active form. In Clostridium sphenoides, citrate lyase ligase actively degrades citrate. In Clostridium sporosphaeroides and Lactococcus lactis, however, the enzyme is under stringent regulatory control. The enzyme's activity in anaerobic bacteria is modulated by phosphorylation and dephosphorylation []. The proteins in this entry represent the C-terminal domain of citrate lyase ligase.; GO: 0008771 [citrate (pro-3S)-lyase] ligase activity
Probab=97.76 E-value=0.00012 Score=52.41 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=46.4
Q ss_pred EEecccCCCCHHHHHHHHHHHHHhcCcEEE-EEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 25 VLGGTFDRLHDGHRLFLKASAELARDRIVV-GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 25 ~~~GtFD~lH~GH~~ll~~a~~~~~~~viV-~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
....+-+|++.||+.|+++|++.++ .+.| +|..| ..+.||++|++.+++=+..+ +++.|+
T Consensus 3 aIVMNaNPFT~GH~yLiE~Aa~~~d-~l~vFVV~eD---------~S~Fpf~~R~~LVk~G~~~L-~NV~V~ 63 (182)
T PF08218_consen 3 AIVMNANPFTLGHRYLIEQAAKECD-WLHVFVVSED---------RSLFPFADRYELVKEGTADL-PNVTVH 63 (182)
T ss_pred eEEEcCCCCccHHHHHHHHHHHhCC-EEEEEEEccc---------cCcCCHHHHHHHHHHHhCcC-CCEEEE
Confidence 3445779999999999999999984 4444 44444 34689999999999999887 666554
No 65
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=97.50 E-value=0.00045 Score=52.60 Aligned_cols=54 Identities=28% Similarity=0.317 Sum_probs=36.5
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecC--C--CCCcccccCCCCCHHHHHHHHH
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG--P--MLTNKQFAELIQPVDERMRNVE 82 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d--~--~l~~k~~~~~i~~f~~R~~~~~ 82 (103)
-|.+.|+ +|.||+.|+++|.+.+ + .+++|++ | +.+++.....+.+++++.+.++
T Consensus 26 ~VpTmG~---LH~GH~~LI~~a~~~a-~--~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll~ 83 (282)
T TIGR00018 26 FVPTMGN---LHDGHMSLIDRAVAEN-D--VVVVSIFVNPMQFGPNEDLEAYPRTLEEDCALLE 83 (282)
T ss_pred EEECCCc---ccHHHHHHHHHHHHhC-C--eEEEEecCChHHhCCccccccCCCCHHHHHHHHH
Confidence 4667888 9999999999999998 3 4555654 2 2232333345678888875443
No 66
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=97.50 E-value=0.00042 Score=52.67 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=33.9
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC----CCCcccccCCCCCHHHHHH
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP----MLTNKQFAELIQPVDERMR 79 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~----~l~~k~~~~~i~~f~~R~~ 79 (103)
|.+.|+ +|.||+.|+++|.+.+ + ++++|+++ +.+++.....+.+++++.+
T Consensus 27 v~tmG~---lH~GH~~Li~~a~~~a-~--~vVvTf~~~P~qf~~~~~~~~~~~t~e~~~~ 80 (281)
T PRK00380 27 VPTMGA---LHEGHLSLVREARAEA-D--IVVVSIFVNPLQFGPNEDLDRYPRTLEADLA 80 (281)
T ss_pred EEccCc---eeHHHHHHHHHHHHhC-C--EEEEeCCCCHHHhCCCccccccCCCHHHHHH
Confidence 445565 9999999999999998 3 56667763 2232322345677777765
No 67
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=97.47 E-value=0.00044 Score=52.49 Aligned_cols=55 Identities=22% Similarity=0.383 Sum_probs=34.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC--CCCcccccCCCCCHHHHHH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMR 79 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~--~l~~k~~~~~i~~f~~R~~ 79 (103)
.-.|.+.|+ +|.||+.|+++|.+.+ +.++|.+.-+| +.+++.....+.+++++.+
T Consensus 24 ig~V~TmG~---LH~GH~~LI~~a~~~a-~~vVvtf~~nP~qf~~~ed~~~y~~t~e~d~~ 80 (277)
T cd00560 24 IGFVPTMGA---LHEGHLSLVRRARAEN-DVVVVSIFVNPLQFGPNEDLDRYPRTLEADLA 80 (277)
T ss_pred EEEEECCCc---ccHHHHHHHHHHHHhC-CEEEEEecCChhhcCCcccccccCCCHHHHHH
Confidence 445678888 9999999999999998 34443333333 2222322334567777764
No 68
>TIGR00339 sopT ATP sulphurylase. Members of this family also include the dissimilatory sulfate adenylyltransferase (sat) of the sulfate reducer Archaeoglobus fulgidus.
Probab=97.46 E-value=0.0013 Score=51.98 Aligned_cols=61 Identities=25% Similarity=0.189 Sum_probs=43.8
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHH-hcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAEL-ARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~-~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
++|+..=||||+|.||..+++.|.+. ..+.+++.++..+ . | .-..|.+.|+++++.+++.+
T Consensus 184 ~~Vvafqt~nPiHr~H~~l~~~a~e~l~~d~lll~P~~g~-~--k---~~~~~~~~R~~~~~~~~~~~ 245 (383)
T TIGR00339 184 DTVVAFQTRNPMHRAHEELTKRAARSLPNAGVLVHPLVGL-T--K---PGDIPAEVRMRAYEVLKEGY 245 (383)
T ss_pred CeEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCC-C--C---CCCCCHHHHHHHHHHHHhhC
Confidence 57888899999999999999999997 2246777777652 1 1 13456667776666666654
No 69
>PLN02660 pantoate--beta-alanine ligase
Probab=97.44 E-value=0.00055 Score=52.18 Aligned_cols=55 Identities=25% Similarity=0.311 Sum_probs=36.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecC--CC-CCc-ccccCCCCCHHHHHHHH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG--PM-LTN-KQFAELIQPVDERMRNV 81 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d--~~-l~~-k~~~~~i~~f~~R~~~~ 81 (103)
.--|.+.|+ +|.||+.|+++|.+.++ .+++|++ |. +.+ +.....+.+.+++.+.+
T Consensus 23 igfVpTmG~---LH~GH~~LI~~a~~~a~---~vVvTffvnP~qf~~~ed~~~yp~tle~d~~ll 81 (284)
T PLN02660 23 IALVPTMGY---LHEGHLSLVRAARARAD---VVVVSIYVNPGQFAPGEDLDTYPRDFDGDLRKL 81 (284)
T ss_pred EEEEEcCch---hhHHHHHHHHHHHHhCC---EEEEEEeCChHHcCCccccccCCCCHHHHHHHH
Confidence 344777788 99999999999999984 5556665 21 222 22234567777777543
No 70
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=96.96 E-value=0.003 Score=48.79 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=51.7
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEE-EEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEE-Ee
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVV-GVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHV-LF 96 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV-~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V-~G 96 (103)
.+.+++....+-+|+.+||+.|+++|..++ |.+-+ +|..| ..+.||++|++.+++=+..+ +++.+ -|
T Consensus 143 ~gkkIgaIVMNANPFTLGH~YLVEqAaaqc-DwlHLFvV~eD---------~S~f~y~~R~~Lv~~G~~~l-~Nvt~Hsg 211 (352)
T COG3053 143 PGKKIGAIVMNANPFTLGHRYLVEQAAAQC-DWLHLFVVKED---------SSLFPYEDRLDLVKKGTADL-PNVTVHSG 211 (352)
T ss_pred CCCeeEEEEEeCCCccchhHHHHHHHHhhC-CEEEEEEEecc---------cccCCHHHHHHHHHHhhccC-CceEEecC
Confidence 356788888999999999999999999998 54433 34444 23689999999988877766 44444 34
Q ss_pred eCc
Q 034114 97 FGS 99 (103)
Q Consensus 97 ~d~ 99 (103)
.||
T Consensus 212 sdY 214 (352)
T COG3053 212 SDY 214 (352)
T ss_pred CCe
Confidence 444
No 71
>PF05636 HIGH_NTase1: HIGH Nucleotidyl Transferase; InterPro: IPR008513 This family consists of several bacterial proteins of unknown function.; PDB: 3GMI_A.
Probab=96.56 E-value=0.0078 Score=47.67 Aligned_cols=42 Identities=14% Similarity=0.409 Sum_probs=19.5
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML 62 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l 62 (103)
|+++-..--|+|+|.||...|+++++......+|+|-+..++
T Consensus 1 Mk~~GIIaEYNPFHnGH~y~i~~~k~~~~ad~ii~vMSGnFv 42 (388)
T PF05636_consen 1 MKVVGIIAEYNPFHNGHLYQIEQAKKITGADVIIAVMSGNFV 42 (388)
T ss_dssp ------E---TT--HHHHHHHHHHH---TSSEEEEEE--TTS
T ss_pred CCCCCeEEeECCccHHHHHHHHHHhccCCCCEEEEEECCCcc
Confidence 344445567999999999999999987644455555555444
No 72
>COG1323 Predicted nucleotidyltransferase [General function prediction only]
Probab=95.61 E-value=0.029 Score=44.17 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=28.1
Q ss_pred EEecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecC
Q 034114 25 VLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDG 59 (103)
Q Consensus 25 ~~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d 59 (103)
=..--|||.|.||+.+|++|.++. .+.++++++.|
T Consensus 5 Gii~eyNPfHnGH~y~i~~Ar~~~~~d~~i~~msgd 40 (358)
T COG1323 5 GIIAEYNPFHNGHQYHINKAREEFKGDEIIAVMSGD 40 (358)
T ss_pred eeeeecCcccccHHHHHHHHHHhccCCceEEeeecc
Confidence 344579999999999999999965 35777777776
No 73
>PF01747 ATP-sulfurylase: ATP-sulfurylase; InterPro: IPR002650 This entry consists of sulphate adenylyltransferase or ATP-sulfurylase (2.7.7.4 from EC) some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase, IPR002891 from INTERPRO. Both enzymes are required for PAPS (phosphoadenosine-phosphosulphate) synthesis from inorganic sulphate []. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulphate APS from ATP and inorganic sulphate [].; GO: 0004781 sulfate adenylyltransferase (ATP) activity, 0000103 sulfate assimilation; PDB: 3CR8_B 1M8P_C 1I2D_B 1JHD_A 1V47_B 1X6V_B 1XNJ_A 1XJQ_B 2QJF_A 2GKS_B ....
Probab=95.57 E-value=0.15 Score=37.40 Aligned_cols=61 Identities=28% Similarity=0.301 Sum_probs=37.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
-++|+..=|-+|+|.||..|++.|.+.+.+.+.+-..-. ..| .--.|.+.|++..+.+++.
T Consensus 20 w~~VvafqtrnPlHraHe~l~~~a~e~~~~~lll~plvG---~~k---~~d~~~~~r~~~~~~~~~~ 80 (215)
T PF01747_consen 20 WRRVVAFQTRNPLHRAHEYLMRRALEKAGDGLLLHPLVG---PTK---PGDIPYEVRVRCYEALIDN 80 (215)
T ss_dssp -SSEEEEEESS---HHHHHHHHHHHHHHTSEEEEEEBES---B-S---TTSCCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCcEEEEeccC---CCC---cCCCCHHHHHHHHHHHHHH
Confidence 356777778999999999999999998744454444333 111 1235667777766666665
No 74
>COG2046 MET3 ATP sulfurylase (sulfate adenylyltransferase) [Inorganic ion transport and metabolism]
Probab=94.90 E-value=0.3 Score=38.89 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=27.8
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcC
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARD 50 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~ 50 (103)
+-++|+..-|+|++|.||..+.+.|.+.++.
T Consensus 182 gwk~vvafQTRNp~HraHEyl~K~Al~~vdg 212 (397)
T COG2046 182 GWKTVVAFQTRNPPHRAHEYLQKRALEKVDG 212 (397)
T ss_pred CCeEEEEEecCCCchHHHHHHHHHHHHhcCc
Confidence 3578999999999999999999999999853
No 75
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=94.18 E-value=0.21 Score=38.14 Aligned_cols=39 Identities=23% Similarity=0.387 Sum_probs=25.8
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM 61 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~ 61 (103)
+.+-+..|---+|.||+.|+++|...+ +.++|.+--||.
T Consensus 22 ~~igfVPTMGaLHeGHlsLi~~A~~~~-d~vVVSIFVNP~ 60 (280)
T PF02569_consen 22 KTIGFVPTMGALHEGHLSLIRRARAEN-DVVVVSIFVNPT 60 (280)
T ss_dssp SSEEEEEE-SS--HHHHHHHHHHHHHS-SEEEEEE---GG
T ss_pred CeEEEECCCchhhHHHHHHHHHHHhCC-CEEEEEECcCcc
Confidence 445555677778999999999999988 578777776753
No 76
>cd00517 ATPS ATP-sulfurylase. ATP-sulfurylase (ATPS), also known as sulfate adenylate transferase, catalyzes the transfer of an adenylyl group from ATP to sulfate, forming adenosine 5'-phosphosulfate (APS). This reaction is generally accompanied by a further reaction, catalyzed by APS kinase, in which APS is phosphorylated to yield 3'-phospho-APS (PAPS). In some organisms the APS kinase is a separate protein, while in others it is incorporated with ATP sulfurylase in a bifunctional enzyme that catalyzes both reactions. In bifunctional proteins, the domain that performs the kinase activity can be attached at the N-terminal end of the sulfurylase unit or at the C-terminal end, depending on the organism. While the reaction is ubiquitous among organisms, the physiological role of the reaction varies. In some organisms it is used to generate APS from sulfate and ATP, while in others it proceeds in the opposite direction to generate ATP from APS and pyrophosphate. ATP sulfurylase can be
Probab=93.69 E-value=0.8 Score=35.99 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=27.0
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEE
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVV 54 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV 54 (103)
++|+..=|-+|+|.||..+++.|.+.++ +.+.+
T Consensus 157 ~~VvafqtrnP~HraHe~l~~~a~~~~~~~~lll 190 (353)
T cd00517 157 RRVVAFQTRNPMHRAHEELMKRAAEKLLNDGLLL 190 (353)
T ss_pred CeEEEeecCCCCchhhHHHHHHHHHHcCCCcEEE
Confidence 4778888999999999999999999874 33433
No 77
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=93.33 E-value=0.41 Score=36.64 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=31.9
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM 61 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~ 61 (103)
.++|.+.=|--.+|.||+.|+++|++.+ +.++|.+--||.
T Consensus 21 gk~Vg~VPTMG~LH~GHlsLVr~A~~~~-d~VVVSIFVNP~ 60 (285)
T COG0414 21 GKRVGLVPTMGNLHEGHLSLVRRAKKEN-DVVVVSIFVNPL 60 (285)
T ss_pred CCEEEEEcCCcccchHHHHHHHHHhhcC-CeEEEEEEeChh
Confidence 3445666688889999999999999998 588888877753
No 78
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=92.81 E-value=0.96 Score=37.56 Aligned_cols=65 Identities=20% Similarity=0.133 Sum_probs=40.1
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKW 91 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~ 91 (103)
-++|+..=|-+|+|.||..+++.|.+.++..+.+ .++.-.. +.--.|++-|++..+.+++.+.++
T Consensus 186 w~~v~afqtrnP~Hr~He~l~~~a~~~~d~~lll----~p~~G~~--k~~d~~~~~r~~~~~~~~~~~p~~ 250 (568)
T PRK05537 186 WRRVVAFQTRNPLHRAHEELTKRAAREVGANLLI----HPVVGMT--KPGDIDHFTRVRCYEALLDKYPPA 250 (568)
T ss_pred CCcEEEEecCCCCcHHHHHHHHHHHHhcCCeEEE----ecCCCCC--CCCCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888899999999999999999987422222 2222111 012345566666666555554333
No 79
>PRK04149 sat sulfate adenylyltransferase; Reviewed
Probab=92.63 E-value=1.1 Score=35.66 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.7
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhc
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR 49 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~ 49 (103)
-++|+..=|-+|+|.||..|.+.|.+.++
T Consensus 186 w~~VvafqTrnP~HraHe~l~~~a~e~~d 214 (391)
T PRK04149 186 WKTVVAFQTRNPPHRAHEYLQKCALEIVD 214 (391)
T ss_pred CCeEEEeecCCCCchHHHHHHHHHHHhcC
Confidence 36788888999999999999999999884
No 80
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=91.64 E-value=0.76 Score=37.83 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=30.7
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~ 60 (103)
++-+.-|-=.+|.||+.|+++|++.+ +.++|.+--||
T Consensus 21 ~ig~VPTMG~LH~GHlsLi~~A~~~~-d~vVvSIFVNP 57 (512)
T PRK13477 21 TIGFVPTMGALHQGHLSLIRRARQEN-DVVLVSIFVNP 57 (512)
T ss_pred cEEEECCCcchhHHHHHHHHHHHHhC-CEEEEEEccCc
Confidence 56667788899999999999999998 57777776665
No 81
>KOG3199 consensus Nicotinamide mononucleotide adenylyl transferase [Coenzyme transport and metabolism]
Probab=91.09 E-value=1.4 Score=32.72 Aligned_cols=61 Identities=21% Similarity=0.373 Sum_probs=40.4
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhc---C-cEEEEEecCCCC-CcccccCCCCCHHHHHHHHHHHHH
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELAR---D-RIVVGVCDGPML-TNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~---~-~viV~vt~d~~l-~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
..++.|+|+|+..+|+.+.+-|+..-. . .|+-|+-+ |+- ..|+ +.+.|-..|+.+++..-+
T Consensus 10 ~l~A~gSFNpiT~~HLrmfElAkd~l~~t~~~~Vv~GimS-PV~DaYkK--KgLipa~hrv~~~ElAt~ 75 (234)
T KOG3199|consen 10 VLLACGSFNPITNLHLRMFELAKDYLNETGRYRVVKGIMS-PVGDAYKK--KGLIPAYHRVRMVELATE 75 (234)
T ss_pred EEEEecccCchhHHHHHHHHHHHHHHhccCCeEEEeeEec-ccchhhhc--cccchhhhHHHHHHhhhc
Confidence 456778999999999999999987541 1 55555544 322 2222 356777788877665543
No 82
>smart00764 Citrate_ly_lig Citrate lyase ligase C-terminal domain. Proteins of this family contain the C-terminal domain of citrate lyase ligase EC:6.2.1.22.
Probab=87.36 E-value=0.41 Score=34.07 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=18.5
Q ss_pred HHHHHHH----hcCCCEEEEeeCcee
Q 034114 80 NVEAYIK----VLGKWMHVLFFGSYF 101 (103)
Q Consensus 80 ~~~~fi~----~~~~~~~V~G~d~~f 101 (103)
++++|++ +++++.+|+|+||+|
T Consensus 94 sa~~Fi~~L~~~l~~~~ivvG~df~F 119 (182)
T smart00764 94 DLRIFRKYIAPALGITHRYVGEEPFS 119 (182)
T ss_pred CHHHHHHHHHHHcCceEEEEcCCCCC
Confidence 4677774 579999999999998
No 83
>KOG3042 consensus Panthothenate synthetase [Coenzyme transport and metabolism]
Probab=76.51 E-value=5.4 Score=29.95 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=29.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~ 60 (103)
.+++-+.-|--.+|-||..|++++++.. ++.+|.+--+|
T Consensus 23 g~tIgfVPTMG~LHeGH~SLvrqs~~~~-~~tVVSIfVNP 61 (283)
T KOG3042|consen 23 GETIGFVPTMGCLHEGHASLVRQSVKEN-TYTVVSIFVNP 61 (283)
T ss_pred CCeEEEecccccccccHHHHHHHHHhhC-ceEEEEEEech
Confidence 3445555677789999999999999998 47777776653
No 84
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=76.30 E-value=0.66 Score=37.33 Aligned_cols=29 Identities=10% Similarity=-0.038 Sum_probs=25.2
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHh
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELA 48 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~ 48 (103)
..+.+++.|.||.+|.||+.+|+++..-+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (470)
T PLN02341 413 NEDDTFWAELLKNSDCSEISFLSKMAING 441 (470)
T ss_pred CcchhHHHHhhcccccchhhhhhhhhhcc
Confidence 45678999999999999999999987554
No 85
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=59.95 E-value=89 Score=25.03 Aligned_cols=63 Identities=19% Similarity=0.152 Sum_probs=32.8
Q ss_pred cEEEEec---ccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCC-CCC-c--ccccCCCCCHHHHHHHHHHH
Q 034114 22 GAVVLGG---TFDRLHDGHRLFLKASAELARD--RIVVGVCDGP-MLT-N--KQFAELIQPVDERMRNVEAY 84 (103)
Q Consensus 22 ~~v~~~G---tFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~-~l~-~--k~~~~~i~~f~~R~~~~~~f 84 (103)
+..++.| |-+-+|.||.-.+.....+-+. .+++.+.... .+. + +...+...+.++..++++.+
T Consensus 33 ~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i 104 (410)
T PRK13354 33 PLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTY 104 (410)
T ss_pred CcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHH
Confidence 3345555 5567999998888877775421 3444442221 121 1 11123456766555554433
No 86
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=46.88 E-value=80 Score=24.22 Aligned_cols=83 Identities=14% Similarity=0.020 Sum_probs=43.1
Q ss_pred cccccccccccCCCCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccc--cCCCCCHHHHHHH
Q 034114 3 MAILDESVVNSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQF--AELIQPVDERMRN 80 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~--~~~i~~f~~R~~~ 80 (103)
||.+++++.. .++++.++||.. .| ..++..+.+.+ .-++++..++....... .....++.+ .+.
T Consensus 1 ~~~~~~~~~~------~~~~ilIiG~g~----~~-~~~~~a~~~~G--~~v~~~~~~~~~~~~~~ad~~~~~~~~d-~~~ 66 (395)
T PRK09288 1 MTRLGTPLSP------SATRVMLLGSGE----LG-KEVAIEAQRLG--VEVIAVDRYANAPAMQVAHRSHVIDMLD-GDA 66 (395)
T ss_pred CccccCCCCC------CCCEEEEECCCH----HH-HHHHHHHHHCC--CEEEEEeCCCCCchHHhhhheEECCCCC-HHH
Confidence 5566655443 334555665542 33 44555666665 45556666532111000 011122211 245
Q ss_pred HHHHHHhcCCCEEEEeeCc
Q 034114 81 VEAYIKVLGKWMHVLFFGS 99 (103)
Q Consensus 81 ~~~fi~~~~~~~~V~G~d~ 99 (103)
+.+++++.++|.++.+.++
T Consensus 67 l~~~~~~~~id~vi~~~e~ 85 (395)
T PRK09288 67 LRAVIEREKPDYIVPEIEA 85 (395)
T ss_pred HHHHHHHhCCCEEEEeeCc
Confidence 7778888889999888764
No 87
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.76 E-value=97 Score=24.94 Aligned_cols=27 Identities=30% Similarity=0.201 Sum_probs=20.6
Q ss_pred cEEEEec---ccCCCCHHHHHHHHHHHHHh
Q 034114 22 GAVVLGG---TFDRLHDGHRLFLKASAELA 48 (103)
Q Consensus 22 ~~v~~~G---tFD~lH~GH~~ll~~a~~~~ 48 (103)
+..++.| |-+-+|+||.-.+.....+-
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ 61 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQ 61 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHHHHH
Confidence 3445555 66789999999999888864
No 88
>PF04978 DUF664: Protein of unknown function (DUF664); InterPro: IPR007061 The proteins in this family of unknown function contain several conserved histidines at their N terminus that may form a metal binding site.; PDB: 2OU6_A.
Probab=44.19 E-value=14 Score=25.13 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=10.5
Q ss_pred CHHHHHHHHHHH
Q 034114 34 HDGHRLFLKASA 45 (103)
Q Consensus 34 H~GH~~ll~~a~ 45 (103)
|.||..++++..
T Consensus 137 H~GhadilRe~l 148 (150)
T PF04978_consen 137 HAGHADILRELL 148 (150)
T ss_dssp HHHHHHHHHHHH
T ss_pred ChhHHHHHHHHh
Confidence 899999998874
No 89
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=40.00 E-value=77 Score=25.16 Aligned_cols=57 Identities=12% Similarity=0.166 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeCce
Q 034114 36 GHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFGSY 100 (103)
Q Consensus 36 GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d~~ 100 (103)
|=-..++.++....+.+-..++.|..+. ...++..+.+.+++++++||++|+|.=|.
T Consensus 35 Gp~~~l~~~l~~~~eIv~TiiCGDnyf~--------en~eea~~~i~~mv~~~~pD~viaGPaFn 91 (349)
T PF07355_consen 35 GPGLMLEKALKDDAEIVATIICGDNYFN--------ENKEEALKKILEMVKKLKPDVVIAGPAFN 91 (349)
T ss_pred ChHHHHHHHhcCCCEEEEEEEECcchhh--------hCHHHHHHHHHHHHHhcCCCEEEEcCCcC
Confidence 3344556655432135555666675442 23467778899999999999999997654
No 90
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=39.57 E-value=44 Score=23.03 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhcCCCEEEEee
Q 034114 77 RMRNVEAYIKVLGKWMHVLFF 97 (103)
Q Consensus 77 R~~~~~~fi~~~~~~~~V~G~ 97 (103)
-.+.+.+||++.+|+++++|.
T Consensus 51 ~~~~l~~~i~~~kP~vI~v~g 71 (150)
T PF14639_consen 51 DMERLKKFIEKHKPDVIAVGG 71 (150)
T ss_dssp HHHHHHHHHHHH--SEEEE--
T ss_pred HHHHHHHHHHHcCCeEEEEcC
Confidence 345688999999999999954
No 91
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=35.58 E-value=90 Score=25.48 Aligned_cols=57 Identities=12% Similarity=0.058 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeCce
Q 034114 36 GHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFGSY 100 (103)
Q Consensus 36 GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d~~ 100 (103)
|=-..++.++....+.+-..++.|..+. ...++-.+.+.+++++++||++|.|.=|.
T Consensus 31 Gp~~~l~~~l~~~~eVvaTiiCGDnYf~--------en~eea~~~i~~mv~k~~pDv~iaGPaFN 87 (431)
T TIGR01918 31 PISQMLNKLLEEDAEVVHTVVCGDSFFG--------ENLEEAVARVLEMLKDKEPDIFIAGPAFN 87 (431)
T ss_pred ChHHHHHHHhccCCEEEEEEEECchhhh--------hCHHHHHHHHHHHHHhcCCCEEEEcCccC
Confidence 3334555555421124555566665442 23467778899999999999999997654
No 92
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=35.00 E-value=95 Score=25.37 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=30.5
Q ss_pred cEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeCce
Q 034114 51 RIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFGSY 100 (103)
Q Consensus 51 ~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d~~ 100 (103)
.+-..++.|..+. ...++-.+.+.+++++++||++|.|.=|.
T Consensus 46 VvaTiiCGDnYf~--------en~eea~~~i~~mv~k~~pDv~iaGPaFN 87 (431)
T TIGR01917 46 IVATVVCGDSFFG--------ENLEEAKAKVLEMIKGANPDIFIAGPAFN 87 (431)
T ss_pred EEEEEEECchhhh--------hCHHHHHHHHHHHHHhcCCCEEEEcCccC
Confidence 4555566665442 23467778899999999999999997654
No 93
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=34.91 E-value=89 Score=23.29 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=21.3
Q ss_pred ccCCCCHHHHHHHHHHHHHhc--CcEEEEEecC
Q 034114 29 TFDRLHDGHRLFLKASAELAR--DRIVVGVCDG 59 (103)
Q Consensus 29 tFD~lH~GH~~ll~~a~~~~~--~~viV~vt~d 59 (103)
|-+ +|+||.--+....++-+ -.+++.++..
T Consensus 15 Tg~-lHlG~l~~~~~~~~lq~~g~~~~i~iaD~ 46 (292)
T PF00579_consen 15 TGD-LHLGHLVPIMKLIWLQKAGFKVIILIADL 46 (292)
T ss_dssp SSS--BHHHHHHHHHHHHHHHTTSEEEEEEEHH
T ss_pred CCc-ccchHHHHHHHHHHHHhcCCccceEecch
Confidence 667 99999999988887642 2677777654
No 94
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.15 E-value=29 Score=28.52 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=30.1
Q ss_pred ccccccCCCCCCCccEEEEec--ccCCCCHHHH------HHHHHHHHHhcCc-EEEEEec
Q 034114 8 ESVVNSNISPDNSYGAVVLGG--TFDRLHDGHR------LFLKASAELARDR-IVVGVCD 58 (103)
Q Consensus 8 ~~~~~~~~~~~~~~~~v~~~G--tFD~lH~GH~------~ll~~a~~~~~~~-viV~vt~ 58 (103)
....+.++.|.+ -+.+++| .+|-.|+||. .++++.++... + |.-+-+.
T Consensus 11 ~ke~F~P~~~~~--V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~G-y~V~yV~Ni 67 (464)
T COG0215 11 QKEEFVPIDPGK--VKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLG-YKVTYVRNI 67 (464)
T ss_pred ceecccCCCCCe--EEEEecCCccCCccccccCcceehHHHHHHHHHHhC-CeEEEEecc
Confidence 333444444444 4456666 7999999996 57788887653 5 5555443
No 95
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=32.97 E-value=2.1e+02 Score=21.42 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=15.2
Q ss_pred ccCCCCHHHHHHHHHHHHHh
Q 034114 29 TFDRLHDGHRLFLKASAELA 48 (103)
Q Consensus 29 tFD~lH~GH~~ll~~a~~~~ 48 (103)
|=+.+|+||.--+..+..+-
T Consensus 9 Tg~~lHlGh~~~l~~~~~lq 28 (273)
T cd00395 9 TADSLHIGHLIGLLTFRRFQ 28 (273)
T ss_pred CCCCccHHHHHHHHHHHHHH
Confidence 44579999988887777653
No 96
>TIGR00608 radc DNA repair protein radc. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=31.53 E-value=1.1e+02 Score=22.41 Aligned_cols=74 Identities=16% Similarity=0.128 Sum_probs=42.8
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCC---CCHHHHHHHHHHHHHhcCCCEEEEeeCc
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELI---QPVDERMRNVEAYIKVLGKWMHVLFFGS 99 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i---~~f~~R~~~~~~fi~~~~~~~~V~G~d~ 99 (103)
..++.|+-|....-=+.++++|..... -.|++..|- +.....|- ..+++|+..+.+.+.--=-|.+|+|.+-
T Consensus 134 ~~i~~Gt~~~~~v~pReI~~~Al~~~A--~~vIlaHNH---PSG~~~PS~~Di~~T~~l~~a~~~lgI~llDHiIvg~~~ 208 (218)
T TIGR00608 134 EVVFIGTVNHVPVHPREIFKEALKLSA--SALILAHNH---PSGEPSPSQEDILITERLRKAAELLGIELLDHLIIGKGR 208 (218)
T ss_pred EEeecCCCCeEEEcHHHHHHHHHHhhC--CeEEEEeec---CCCCCCCCHHHHHHHHHHHHHHHhCCCEEeeEEEEcCCc
Confidence 466789999666655899999998863 333444441 11111111 1245555555555542126888998876
Q ss_pred ee
Q 034114 100 YF 101 (103)
Q Consensus 100 ~f 101 (103)
+|
T Consensus 209 y~ 210 (218)
T TIGR00608 209 YV 210 (218)
T ss_pred EE
Confidence 65
No 97
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=30.64 E-value=46 Score=23.86 Aligned_cols=23 Identities=13% Similarity=-0.034 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCCEEEEeeCc-eee
Q 034114 79 RNVEAYIKVLGKWMHVLFFGS-YFQ 102 (103)
Q Consensus 79 ~~~~~fi~~~~~~~~V~G~d~-~f~ 102 (103)
....+++++.+|+ +++|+|- .||
T Consensus 63 ~~f~~~i~~~dPd-ii~g~N~~~FD 86 (207)
T cd05785 63 EELVAIIRERDPD-VIEGHNIFRFD 86 (207)
T ss_pred HHHHHHHHHhCCC-EEeccCCcccC
Confidence 3456667788898 6678887 465
No 98
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=29.81 E-value=1.3e+02 Score=21.42 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=33.0
Q ss_pred HHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeC
Q 034114 41 LKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFG 98 (103)
Q Consensus 41 l~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d 98 (103)
+++..+.+ .-+.+.-.||.+ .|..-+..|+..++++.++++..+++-.||
T Consensus 15 ~~~L~~~g--~~vt~~fyNPNI------hP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~ 64 (176)
T PF02677_consen 15 LERLREEG--FDVTGYFYNPNI------HPYEEYERRLEELKRFAEKLGIPLIEGDYD 64 (176)
T ss_pred HHHHHHCC--CCeEEEEeCCCC------CcHHHHHHHHHHHHHHHHHcCCCEEecCCC
Confidence 44444443 455666667544 233457789999999999988777775544
No 99
>COG2003 RadC DNA repair proteins [DNA replication, recombination, and repair]
Probab=29.48 E-value=1.1e+02 Score=22.78 Aligned_cols=73 Identities=12% Similarity=0.114 Sum_probs=45.7
Q ss_pred cEEEEecccCC--CCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCC---CCHHHHHHHHHHHHHhcCCCEEEEe
Q 034114 22 GAVVLGGTFDR--LHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELI---QPVDERMRNVEAYIKVLGKWMHVLF 96 (103)
Q Consensus 22 ~~v~~~GtFD~--lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i---~~f~~R~~~~~~fi~~~~~~~~V~G 96 (103)
..+++.||-|. +|+ +.++++|....-..+ .+..|- +....+|. .-+++|+....+.+.--=.|.+|+|
T Consensus 139 ~e~lf~GTi~~s~V~P--REI~k~Al~~nAaav--IlaHNH---PSGd~~PS~aD~~iT~rl~~a~~ll~I~vLDHiIig 211 (224)
T COG2003 139 TETLFIGTLNVSEVHP--REIFKEALKYNAAAV--ILAHNH---PSGDPTPSRADILITERLKEAGKLLGIRLLDHIIIG 211 (224)
T ss_pred ceeEEeeecccceecH--HHHHHHHHHhcchhh--heeccC---CCCCCCcCHHHHHHHHHHHHHHHhcCceeeeeEEec
Confidence 35788999985 666 899999998752233 333441 11111221 2356777777777764348999999
Q ss_pred eCcee
Q 034114 97 FGSYF 101 (103)
Q Consensus 97 ~d~~f 101 (103)
.+-+|
T Consensus 212 ~~~y~ 216 (224)
T COG2003 212 EGLYI 216 (224)
T ss_pred CCcEE
Confidence 88665
No 100
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=28.84 E-value=33 Score=25.14 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=24.8
Q ss_pred cccccccccccCCCCC-CCccEEEEecccCCCCHHHHHHHHHHHHHh
Q 034114 3 MAILDESVVNSNISPD-NSYGAVVLGGTFDRLHDGHRLFLKASAELA 48 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~ 48 (103)
|-+++..+.+.|.+.. |-.+ -..|+|++.| .+++|.+.|
T Consensus 97 M~iLs~~fl~~~~~~iiNIHP--aLlpaFkG~~-----a~k~Aleag 136 (206)
T KOG3076|consen 97 MRILSGEFLSQLPKRIINIHP--ALLPAFKGLH-----AIKQALEAG 136 (206)
T ss_pred HHHcCHHHHhhcccceEeccc--ccccccCCch-----HHHHHHHhc
Confidence 6677777777766552 3333 3469999999 445555554
No 101
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.56 E-value=85 Score=24.82 Aligned_cols=62 Identities=16% Similarity=0.202 Sum_probs=35.6
Q ss_pred ccCCCCHHHHHHHHHHHHH---hcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeCc
Q 034114 29 TFDRLHDGHRLFLKASAEL---ARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFGS 99 (103)
Q Consensus 29 tFD~lH~GH~~ll~~a~~~---~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d~ 99 (103)
+=+-+|.||..=.--.+.+ .+-.+++-+|.|+-. .++ +-+++++..+-++---|++.+|+|-
T Consensus 95 SS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKf----lwK-----~l~~eda~~~arENaKDIia~GFDp 159 (397)
T KOG2145|consen 95 SSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKF----LWK-----DLTLEDAKKYARENAKDIIAVGFDP 159 (397)
T ss_pred CccccccccchhHHHHHHHHHHhCCceEEEecccHHH----HHh-----hCcHHHHHHHHHhcccceEEeccCC
Confidence 6788999998644333322 222677778887411 111 1233445555555456788889874
No 102
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.79 E-value=2.6e+02 Score=20.81 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=20.9
Q ss_pred ccCCCCHHHHHHHHHHHHHhc-C-cEEEEEecC
Q 034114 29 TFDRLHDGHRLFLKASAELAR-D-RIVVGVCDG 59 (103)
Q Consensus 29 tFD~lH~GH~~ll~~a~~~~~-~-~viV~vt~d 59 (103)
|-|.+|+||.--+..+..+-+ . .+++.+...
T Consensus 10 Tg~~lHLG~~~~~~~~~~lq~~g~~~~ilI~D~ 42 (269)
T cd00805 10 TAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDA 42 (269)
T ss_pred CCCcccHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 456799999888877776543 2 555555554
No 103
>PRK00024 hypothetical protein; Reviewed
Probab=26.62 E-value=1.8e+02 Score=21.26 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=43.1
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCC---CCHHHHHHHHHHHHHhcCCCEEEEeeCc
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELI---QPVDERMRNVEAYIKVLGKWMHVLFFGS 99 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i---~~f~~R~~~~~~fi~~~~~~~~V~G~d~ 99 (103)
..++-|+-|....-=+.+++.|..... -.|++..|- +.....|- ..+++|+..+.+.+.--=.|.+|+|.+.
T Consensus 140 ~~i~~Gt~~~~~v~pRei~~~Al~~~A--~~iIl~HNH---PSG~~~PS~~D~~~T~~l~~a~~~l~I~llDHiIv~~~~ 214 (224)
T PRK00024 140 EELFIGTLNSSIVHPREIVKRALKLNA--AALILAHNH---PSGDPEPSQADILITKRLKEAGELLGIRLLDHIIIGDGE 214 (224)
T ss_pred EEeeeecCCeEEEcHHHHHHHHHHhhc--cceEEEecC---CCCCCCCCHHHHHHHHHHHHHHHhCCCEEeeEEEEcCCc
Confidence 356779988766655899999998863 334444441 11111110 1245555556566542126888888876
Q ss_pred ee
Q 034114 100 YF 101 (103)
Q Consensus 100 ~f 101 (103)
.|
T Consensus 215 ~~ 216 (224)
T PRK00024 215 YV 216 (224)
T ss_pred EE
Confidence 65
No 104
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=26.26 E-value=76 Score=22.31 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCCEEEEeeCce-ee
Q 034114 79 RNVEAYIKVLGKWMHVLFFGSY-FQ 102 (103)
Q Consensus 79 ~~~~~fi~~~~~~~~V~G~d~~-f~ 102 (103)
....+++++.+|++++ |||-. ||
T Consensus 53 ~~F~~~i~~~dPd~i~-gyN~~~FD 76 (188)
T cd05781 53 REFVKYVKEYDPDIIV-GYNSNAFD 76 (188)
T ss_pred HHHHHHHHHcCCCEEE-ecCCCcCc
Confidence 3456667788899876 88743 55
No 105
>PRK07206 hypothetical protein; Provisional
Probab=26.25 E-value=3.1e+02 Score=21.17 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=37.9
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCC-C---cc----cccCCCCCHHHHHHHHHHHHHhcCCCEE
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPML-T---NK----QFAELIQPVDERMRNVEAYIKVLGKWMH 93 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l-~---~k----~~~~~i~~f~~R~~~~~~fi~~~~~~~~ 93 (103)
+++++.|.+ ..| ..+++.+.+.+ .-++.++.+... . .. .....+ +. .-.+.+.+++++.+++.+
T Consensus 3 k~~liv~~~---~~~-~~~~~a~~~~G--~~~v~v~~~~~~~~~~~~~~~~~~~~~~i-~~-~~~~~l~~~~~~~~~d~v 74 (416)
T PRK07206 3 KKVVIVDPF---SSG-KFLAPAFKKRG--IEPIAVTSSCLLDPYYYASFDTSDFIEVI-IN-GDIDDLVEFLRKLGPEAI 74 (416)
T ss_pred CeEEEEcCC---chH-HHHHHHHHHcC--CeEEEEEcCCCCchhhhcccCcccchhhh-cC-CCHHHHHHHHHHcCCCEE
Confidence 445555543 223 56777777776 445556554211 0 00 000111 11 113456778888999999
Q ss_pred EEeeCce
Q 034114 94 VLFFGSY 100 (103)
Q Consensus 94 V~G~d~~ 100 (103)
+.|.|..
T Consensus 75 i~~~e~~ 81 (416)
T PRK07206 75 IAGAESG 81 (416)
T ss_pred EECCCcc
Confidence 9988753
No 106
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=25.86 E-value=1.9e+02 Score=18.69 Aligned_cols=73 Identities=12% Similarity=0.076 Sum_probs=40.2
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCC---CCHHHHHHHHHHHHH-hcCCCEEEEeeC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELI---QPVDERMRNVEAYIK-VLGKWMHVLFFG 98 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i---~~f~~R~~~~~~fi~-~~~~~~~V~G~d 98 (103)
..+..|+-|....-=+.++++|..... -.+++..+-+ ....+|- ..+++|+..+.+.+. ++ .|.+|+|.+
T Consensus 34 ~~l~~G~~~~~~v~~R~i~~~aL~~~A--~~vil~HNHP---sG~~~PS~~D~~~T~~l~~~~~~l~i~l-lDHiIi~~~ 107 (113)
T cd08071 34 ETISVGTLNSSLVHPREIFKEALRHNA--AAIILAHNHP---SGDPTPSREDIELTKRLKEAGELLGIRL-LDHIIVGDG 107 (113)
T ss_pred EEEeecCCcceecCHHHHHHHHHHHhh--heEEEEeeCC---CCCCCCCHHHHHHHHHHHHHHHHCCCEE-eeEEEEcCC
Confidence 456777778777666889999988763 3333444311 1101110 123344444444443 23 678888877
Q ss_pred cee
Q 034114 99 SYF 101 (103)
Q Consensus 99 ~~f 101 (103)
..|
T Consensus 108 ~~~ 110 (113)
T cd08071 108 GYF 110 (113)
T ss_pred cEE
Confidence 554
No 107
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=25.79 E-value=1.6e+02 Score=23.84 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=20.8
Q ss_pred EEEEec--ccCCCCHHHHH------HHHHHHHHhcCcEEEEEecC
Q 034114 23 AVVLGG--TFDRLHDGHRL------FLKASAELARDRIVVGVCDG 59 (103)
Q Consensus 23 ~v~~~G--tFD~lH~GH~~------ll~~a~~~~~~~viV~vt~d 59 (103)
.++++| ..|.+|+||.. ++.+..+.....|..+..++
T Consensus 23 ~~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~t 67 (465)
T TIGR00435 23 KMYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNIT 67 (465)
T ss_pred eEEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 445555 68999999975 34444444322344444433
No 108
>PLN02486 aminoacyl-tRNA ligase
Probab=25.79 E-value=3.5e+02 Score=21.60 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=23.1
Q ss_pred EEEEec---ccCCCCHHHHHHHHHHHHHh---cCcEEEEEecC
Q 034114 23 AVVLGG---TFDRLHDGHRLFLKASAELA---RDRIVVGVCDG 59 (103)
Q Consensus 23 ~v~~~G---tFD~lH~GH~~ll~~a~~~~---~~~viV~vt~d 59 (103)
..++.| |=+.+|+||.--+..++.+- .-.+++.+|.+
T Consensus 74 ~~vYtG~~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~ 116 (383)
T PLN02486 74 FYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDD 116 (383)
T ss_pred eEEEeCCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCH
Confidence 344444 44569999988887777653 22555556654
No 109
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative
Probab=25.25 E-value=1.2e+02 Score=20.98 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCCEEEEeeCc-eeeC
Q 034114 79 RNVEAYIKVLGKWMHVLFFGS-YFQL 103 (103)
Q Consensus 79 ~~~~~fi~~~~~~~~V~G~d~-~f~~ 103 (103)
....++++..+||+ ++|+|- .||+
T Consensus 68 ~~f~~~i~~~dpdi-ivg~N~~~FD~ 92 (199)
T cd05160 68 KRFFDIIREYDPDI-LTGYNIDDFDL 92 (199)
T ss_pred HHHHHHHHhcCCCE-EEEeccCCCcH
Confidence 34566666777876 678887 5763
No 110
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=24.27 E-value=1e+02 Score=20.54 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=30.0
Q ss_pred cEEEEecccCCCCHHHHHH---HHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 034114 22 GAVVLGGTFDRLHDGHRLF---LKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHV 94 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~l---l~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V 94 (103)
--++..|.+-..|.|+... .++..++++-.+.+....+ ++.-..+.+.++++.++|+++|
T Consensus 98 ~~~i~~~g~~i~~~Gd~~~~~~~~~~~~~~~vDvl~~p~~g-------------~~~~~~~~a~~~~~~l~pk~vi 160 (163)
T PF13483_consen 98 GYLIEVGGVTIYHAGDTGFPPDDEQLKQLGKVDVLFLPVGG-------------PFTMGPEEAAELAERLKPKLVI 160 (163)
T ss_dssp EEEEEETTEEEEE-TT--S---HHHHHHH-S-SEEEEE--T-------------TTS--HHHHHHHHHHCT-SEEE
T ss_pred EEEEEeCCCEEEEECCCccCCCHHHHhcccCCCEEEecCCC-------------CcccCHHHHHHHHHHcCCCEEE
Confidence 3455557778888998887 5555555421333333333 1122224567778888998876
No 111
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=23.79 E-value=1.6e+02 Score=23.47 Aligned_cols=37 Identities=16% Similarity=0.137 Sum_probs=22.1
Q ss_pred EEEEec--ccCCCCHHHHH------HHHHHHHHhcCcEEEEEecC
Q 034114 23 AVVLGG--TFDRLHDGHRL------FLKASAELARDRIVVGVCDG 59 (103)
Q Consensus 23 ~v~~~G--tFD~lH~GH~~------ll~~a~~~~~~~viV~vt~d 59 (103)
.++++| .+|..|+||.. ++.|..+.....|..+...+
T Consensus 11 ~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nit 55 (384)
T PRK12418 11 TMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVT 55 (384)
T ss_pred EEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 344555 68999999985 45666665432344444433
No 112
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=23.50 E-value=1.9e+02 Score=17.82 Aligned_cols=38 Identities=18% Similarity=0.053 Sum_probs=27.8
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~ 60 (103)
.+.+.|.|+-..........+++..-++....++++++
T Consensus 20 ~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~ 57 (102)
T cd03066 20 DIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDS 57 (102)
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcH
Confidence 35666999998888777777777765456677887763
No 113
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=22.74 E-value=1.2e+02 Score=22.38 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=26.4
Q ss_pred cEEEEEecCCCC-CcccccCCCCCHHHHHHHHHHHHH-hcCCCEEEEeeCc
Q 034114 51 RIVVGVCDGPML-TNKQFAELIQPVDERMRNVEAYIK-VLGKWMHVLFFGS 99 (103)
Q Consensus 51 ~viV~vt~d~~l-~~k~~~~~i~~f~~R~~~~~~fi~-~~~~~~~V~G~d~ 99 (103)
.++-|||.||.+ ++. -..+|.+.+..+.+.+. .-...+.|.|.|.
T Consensus 20 ~~i~GvTTNPsll~k~----g~~~~~~~~~~i~~~i~~~~~vs~ev~~~~~ 66 (222)
T PRK12656 20 LPLAGVTSNPSIAKKE----GDIDFFERIREVREIIGDEASIHVQVVAQDY 66 (222)
T ss_pred CCcceEeCCHHHHHhc----CCCCHHHHHHHHHHHhCCCCcEEEEEEECCH
Confidence 588999999854 322 12466666666666653 2123455666553
No 114
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show
Probab=22.22 E-value=98 Score=21.66 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=13.2
Q ss_pred HHHHHHhcCCCEEEEeeCce-ee
Q 034114 81 VEAYIKVLGKWMHVLFFGSY-FQ 102 (103)
Q Consensus 81 ~~~fi~~~~~~~~V~G~d~~-f~ 102 (103)
..+++++.+||+ ++|+|-. ||
T Consensus 63 F~~~i~~~dpdi-ivgyN~~~FD 84 (195)
T cd05780 63 FIEIVKEKDPDV-IYTYNGDNFD 84 (195)
T ss_pred HHHHHHHcCCCE-EEecCCCCCc
Confidence 344455667885 7788743 65
No 115
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=21.84 E-value=37 Score=27.53 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=23.4
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEec
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCD 58 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~ 58 (103)
.++++||||++ +-|| ++|+-|..-. -++.|...
T Consensus 319 diAFVGGSlv~-~GGH-N~LEpa~~~~--pvi~Gp~~ 351 (419)
T COG1519 319 DIAFVGGSLVP-IGGH-NPLEPAAFGT--PVIFGPYT 351 (419)
T ss_pred cEEEECCcccC-CCCC-ChhhHHHcCC--CEEeCCcc
Confidence 57999999999 6665 7777765332 56666654
No 116
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=21.13 E-value=3.4e+02 Score=23.45 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=21.5
Q ss_pred CCcc-EEEEecc-cCCCCHHHHHHHHHHHHHhc
Q 034114 19 NSYG-AVVLGGT-FDRLHDGHRLFLKASAELAR 49 (103)
Q Consensus 19 ~~~~-~v~~~Gt-FD~lH~GH~~ll~~a~~~~~ 49 (103)
..++ +-++-++ =|.+|+||-.....+++...
T Consensus 578 ~kYP~~LITTs~~DDRVHPaHarKfaa~L~e~~ 610 (648)
T COG1505 578 QKYPPTLITTSLHDDRVHPAHARKFAAKLQEVG 610 (648)
T ss_pred ccCCCeEEEcccccccccchHHHHHHHHHHhcC
Confidence 4444 3444444 57999999998888887764
No 117
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique
Probab=20.45 E-value=1.1e+02 Score=22.00 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCCEEEEeeCce-ee
Q 034114 80 NVEAYIKVLGKWMHVLFFGSY-FQ 102 (103)
Q Consensus 80 ~~~~fi~~~~~~~~V~G~d~~-f~ 102 (103)
...+++++.+|++ ++|||.. ||
T Consensus 79 ~f~~~i~~~~Pd~-i~gyN~~~FD 101 (204)
T cd05779 79 RFFEHIREVKPHI-IVTYNGDFFD 101 (204)
T ss_pred HHHHHHHHhCCCE-EEecCccccC
Confidence 3445566778887 6677654 55
No 118
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic
Probab=20.37 E-value=1.1e+02 Score=21.95 Aligned_cols=21 Identities=5% Similarity=0.186 Sum_probs=14.0
Q ss_pred HHHHHHhcCCCEEEEeeCce-ee
Q 034114 81 VEAYIKVLGKWMHVLFFGSY-FQ 102 (103)
Q Consensus 81 ~~~fi~~~~~~~~V~G~d~~-f~ 102 (103)
..+++++.+||+ ++|||-. ||
T Consensus 78 f~~~i~~~DPDi-i~GyN~~~FD 99 (230)
T cd05777 78 WRDFVQEVDPDI-ITGYNICNFD 99 (230)
T ss_pred HHHHHHhcCCCE-EEEecCCCCC
Confidence 445556788998 6788733 55
Done!