Query 034114
Match_columns 103
No_of_seqs 160 out of 1170
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 16:52:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034114.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034114hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3glv_A Lipopolysaccharide core 99.7 1.6E-18 5.4E-23 117.5 5.8 80 21-102 2-98 (143)
2 3elb_A Ethanolamine-phosphate 99.7 6.6E-18 2.3E-22 129.3 7.3 82 19-102 5-104 (341)
3 1coz_A Protein (glycerol-3-pho 99.7 4.9E-17 1.7E-21 107.5 6.6 78 21-100 1-96 (129)
4 2b7l_A Glycerol-3-phosphate cy 99.7 6.1E-17 2.1E-21 107.6 6.9 78 21-100 1-96 (132)
5 3hl4_A Choline-phosphate cytid 99.7 5E-17 1.7E-21 119.1 6.8 85 16-101 71-174 (236)
6 3k9w_A Phosphopantetheine aden 99.6 8.2E-16 2.8E-20 109.1 9.5 77 19-102 20-119 (187)
7 3elb_A Ethanolamine-phosphate 99.6 4.2E-16 1.4E-20 119.3 7.6 85 16-101 193-298 (341)
8 3do8_A Phosphopantetheine aden 99.6 4.2E-16 1.4E-20 106.8 6.6 74 23-98 2-76 (148)
9 1qjc_A Phosphopantetheine aden 99.6 2.5E-15 8.4E-20 101.9 9.4 75 21-102 1-94 (158)
10 3op1_A Macrolide-efflux protei 99.6 1.7E-15 5.9E-20 114.6 8.5 82 20-101 19-134 (308)
11 1o6b_A Phosphopantetheine aden 99.6 6.8E-15 2.3E-19 101.2 10.3 75 21-102 2-95 (169)
12 3nv7_A Phosphopantetheine aden 99.6 4.3E-15 1.5E-19 102.7 9.0 73 21-100 2-97 (157)
13 2x0k_A Riboflavin biosynthesis 99.6 4E-15 1.4E-19 113.6 8.1 81 21-101 15-128 (338)
14 1mrz_A Riboflavin kinase/FMN a 99.6 2.6E-15 8.8E-20 112.8 6.5 78 23-101 1-104 (293)
15 3nbk_A Phosphopantetheine aden 99.6 9.5E-15 3.2E-19 103.0 9.0 71 19-96 19-108 (177)
16 4f3r_A Phosphopantetheine aden 99.6 6.3E-15 2.2E-19 102.3 6.9 69 21-96 5-91 (162)
17 3nd5_A Phosphopantetheine aden 99.5 3.6E-14 1.2E-18 99.3 8.5 66 21-94 2-67 (171)
18 3f3m_A Phosphopantetheine aden 99.5 4.3E-14 1.5E-18 98.6 7.8 70 21-97 3-91 (168)
19 1od6_A PPAT, phosphopantethein 99.5 1.9E-13 6.6E-18 92.8 9.1 57 24-85 3-59 (160)
20 1ej2_A Nicotinamide mononucleo 99.5 1.9E-13 6.7E-18 95.2 8.6 74 22-100 4-81 (181)
21 1vlh_A Phosphopantetheine aden 99.5 1.8E-13 6.3E-18 95.2 8.4 70 20-97 11-80 (173)
22 1f9a_A Hypothetical protein MJ 99.4 3.6E-13 1.2E-17 92.9 8.1 71 23-98 2-73 (168)
23 2qtr_A Nicotinate (nicotinamid 99.4 5.4E-13 1.8E-17 92.8 7.2 62 22-86 3-65 (189)
24 1kam_A Deamido-NAD(+), nicotin 99.4 7.9E-13 2.7E-17 92.8 8.2 62 22-86 8-70 (194)
25 2qjt_B Nicotinamide-nucleotide 99.4 7.3E-13 2.5E-17 99.2 8.0 75 21-99 7-85 (352)
26 2qjo_A Bifunctional NMN adenyl 99.4 9.7E-13 3.3E-17 97.8 7.6 67 17-87 2-69 (341)
27 2h29_A Probable nicotinate-nuc 99.4 1.3E-12 4.4E-17 91.4 7.3 63 22-87 3-66 (189)
28 1lw7_A Transcriptional regulat 99.4 6.7E-13 2.3E-17 100.6 6.2 75 21-97 2-81 (365)
29 1k4m_A NAMN adenylyltransferas 99.3 2.9E-12 1E-16 91.1 8.2 56 23-82 4-61 (213)
30 1yum_A 'probable nicotinate-nu 99.3 6.4E-12 2.2E-16 91.7 9.2 70 21-95 23-93 (242)
31 3h05_A Uncharacterized protein 99.3 6.6E-12 2.2E-16 88.0 6.1 67 22-95 3-70 (177)
32 1nup_A FKSG76; NAD biosynthesi 99.3 1.5E-11 5E-16 90.0 7.8 74 20-95 5-81 (252)
33 1kqn_A Nmnat, nicotinamide mon 99.1 7.4E-11 2.5E-15 87.8 6.7 75 19-95 6-83 (279)
34 3gmi_A UPF0348 protein MJ0951; 99.0 3.6E-09 1.2E-13 81.4 9.4 75 19-97 50-151 (357)
35 2ejc_A Pantoate--beta-alanine 98.8 1.9E-08 6.6E-13 75.1 8.4 68 22-94 22-91 (280)
36 1jhd_A Sulfate adenylyltransfe 98.3 3.3E-06 1.1E-10 65.6 9.7 71 22-98 193-266 (396)
37 1v47_A ATP sulfurylase; produc 98.1 1.2E-05 4.1E-10 61.5 8.5 60 22-88 156-215 (349)
38 1v8f_A Pantoate-beta-alanine l 97.7 0.00015 5.1E-09 54.0 7.4 57 21-81 19-77 (276)
39 3cov_A Pantothenate synthetase 97.4 0.00045 1.5E-08 52.0 6.7 58 22-80 33-93 (301)
40 3ag6_A Pantothenate synthetase 97.3 0.00072 2.5E-08 50.4 6.8 50 24-79 28-81 (283)
41 3uk2_A Pantothenate synthetase 97.2 0.00067 2.3E-08 50.6 5.8 60 21-81 21-82 (283)
42 3inn_A Pantothenate synthetase 96.5 0.015 5E-07 44.0 8.2 54 22-79 44-101 (314)
43 1r6x_A ATP:sulfate adenylyltra 96.2 0.016 5.4E-07 45.0 7.5 61 22-88 188-248 (395)
44 1g8f_A Sulfate adenylyltransfe 96.1 0.029 1E-06 44.6 8.6 61 22-88 189-249 (511)
45 3q12_A Pantoate--beta-alanine 96.0 0.016 5.4E-07 43.3 6.1 37 21-61 25-63 (287)
46 2gks_A Bifunctional SAT/APS ki 95.3 0.045 1.6E-06 43.6 6.7 61 22-88 164-224 (546)
47 1m8p_A Sulfate adenylyltransfe 95.0 0.043 1.5E-06 44.1 5.9 61 22-88 191-251 (573)
48 3n8h_A Pantothenate synthetase 94.3 0.076 2.6E-06 39.2 5.3 38 22-60 24-61 (264)
49 3mxt_A Pantothenate synthetase 93.2 0.27 9.1E-06 36.6 6.6 34 25-60 28-61 (285)
50 3cr8_A Sulfate adenylyltranfer 91.1 0.61 2.1E-05 37.3 6.9 61 22-88 164-224 (552)
51 1x6v_B Bifunctional 3'-phospho 89.8 1.3 4.6E-05 36.0 7.9 59 22-86 413-477 (630)
52 3h3e_A Uncharacterized protein 47.8 50 0.0017 23.6 6.0 61 24-96 175-235 (267)
53 1yi8_B Tryptophanyl-tRNA synth 46.8 27 0.00092 26.1 4.6 26 33-58 35-62 (351)
54 3out_A Glutamate racemase; str 33.1 87 0.003 22.3 5.3 64 27-97 10-77 (268)
55 2l8k_A NSP7, non-structural pr 32.0 20 0.00068 23.3 1.5 31 3-36 65-95 (123)
56 2qlc_A DNA repair protein RADC 31.9 84 0.0029 20.0 4.6 71 23-101 42-118 (126)
57 1iv0_A Hypothetical protein; r 31.8 65 0.0022 19.5 3.9 26 73-98 35-60 (98)
58 2zp1_A Tyrosyl-tRNA synthetase 31.0 78 0.0027 23.1 4.8 28 32-59 40-69 (314)
59 2cya_A Tyrosyl-tRNA synthetase 30.7 58 0.002 24.4 4.1 27 32-58 47-75 (364)
60 4f1h_A Tyrosyl-DNA phosphodies 29.7 61 0.0021 20.6 3.7 23 73-95 18-40 (250)
61 4fva_A 5'-tyrosyl-DNA phosphod 29.5 60 0.0021 21.1 3.7 23 73-95 28-50 (256)
62 2f9f_A First mannosyl transfer 28.9 92 0.0031 19.6 4.5 35 12-47 14-48 (177)
63 4gz1_A Tyrosyl-DNA phosphodies 27.8 67 0.0023 20.8 3.7 23 73-95 24-46 (256)
64 4dlp_A Aminoacyl-tRNA syntheta 23.0 53 0.0018 25.5 2.8 18 22-39 26-46 (536)
65 1li5_A Cysrs, cysteinyl-tRNA s 22.7 31 0.0011 26.6 1.4 18 22-39 23-42 (461)
66 2dlc_X Tyrosyl-tRNA synthetase 22.1 91 0.0031 23.5 3.8 29 30-58 46-79 (394)
67 3cex_A Uncharacterized protein 21.8 34 0.0012 22.2 1.3 13 33-45 157-169 (172)
68 3c8z_A Cysteinyl-tRNA syntheta 20.7 67 0.0023 24.2 2.9 18 22-39 40-59 (414)
69 3l1w_A Uncharacterized protein 20.4 1.1E+02 0.0038 20.2 3.7 24 72-95 18-41 (257)
No 1
>3glv_A Lipopolysaccharide core biosynthesis protein; structural GEN PSI, MCSG, protein structure initiative; HET: AMP; 1.99A {Thermoplasma volcanium GSS1}
Probab=99.74 E-value=1.6e-18 Score=117.54 Aligned_cols=80 Identities=25% Similarity=0.243 Sum_probs=64.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH-----------------HH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV-----------------EA 83 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~-----------------~~ 83 (103)
|++++++|+|||+|.||+.++++|.+.++ .++|++++++.... +...++.|.++|.+.+ .+
T Consensus 2 m~~v~~~G~FD~vH~GH~~li~~a~~~~~-~~~v~v~~~~~~~~-~~~~~l~~~~eR~~~l~~~~~vd~v~~~~~~~f~~ 79 (143)
T 3glv_A 2 MIRVMATGVFDILHLGHIHYLKESKKLGD-ELVVVVARDSTARN-NGKIPIFDENSRLALISELKVVDRAILGHEGDMMK 79 (143)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTSS-EEEEEECCHHHHHH-TTCCCSSCHHHHHHHHTTBTTCSEEEECCTTCHHH
T ss_pred ceEEEEEeecCCCCHHHHHHHHHHHHhCC-CcEEEEECCcchhh-cCCCCCCCHHHHHHHHHhcCCCCEEEEcCchhHHH
Confidence 78999999999999999999999999984 79999999853211 2235789999998632 23
Q ss_pred HHHhcCCCEEEEeeCceee
Q 034114 84 YIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 84 fi~~~~~~~~V~G~d~~f~ 102 (103)
++++++++++|+|+||+|+
T Consensus 80 ~~~~l~~~~iv~G~d~~f~ 98 (143)
T 3glv_A 80 TVIEVKPDIITLGYDQKFD 98 (143)
T ss_dssp HHHHHCCSEEEECTTCHHH
T ss_pred HHHhcCCCEEEECCCCCCC
Confidence 5568899999999999884
No 2
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.72 E-value=6.6e-18 Score=129.29 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=69.6
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHH------------------
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRN------------------ 80 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~------------------ 80 (103)
+++++|++.|+||++|.||+.+|++|++++ ++++||+++|+.+... +..++.|.++|.+.
T Consensus 5 ~~~~~v~~~G~FD~lH~GH~~lL~~A~~l~-d~LiVgV~~d~~v~~~-K~~pi~s~eER~~~l~~l~~VD~Vv~f~~~~~ 82 (341)
T 3elb_A 5 RRAVRVWCDGCYDMVHYGHSNQLRQARAMG-DYLIVGVHTDEEIAKH-KGPPVFTQEERYKMVQAIKWVDEVVPAAPYVT 82 (341)
T ss_dssp CCCCEEEEEECCCSCCHHHHHHHHHHHHTS-SEEEEEECCHHHHHHH-SSCCSSCHHHHHHHHHHBTTCCEEEETCCSSC
T ss_pred CCceEEEEEeeCCCCCHHHHHHHHHHHHhC-CcCEEEeecCHHHhcc-CCCCCCCHHHHHHHHHHcCCCCEEEecCCCCC
Confidence 567899999999999999999999999999 5899999999643221 12489999999862
Q ss_pred HHHHHHhcCCCEEEEeeCceee
Q 034114 81 VEAYIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 81 ~~~fi~~~~~~~~V~G~d~~f~ 102 (103)
..+|+++++++++|+|+||+|.
T Consensus 83 ~~efi~~~~~d~vV~G~D~~~g 104 (341)
T 3elb_A 83 TLETLDKYNCDFCVHGNDITLT 104 (341)
T ss_dssp CHHHHHHTTCSEEEECSCCCBC
T ss_pred HHHHHHHhCCCEEEECCCCCCC
Confidence 2689999999999999999984
No 3
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=99.68 E-value=4.9e-17 Score=107.51 Aligned_cols=78 Identities=26% Similarity=0.214 Sum_probs=61.4
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH---------------H---
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV---------------E--- 82 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~---------------~--- 82 (103)
|++++++|+|||+|.||+.++++|.+.+ +.++|++++++....+. ..++.++++|.+++ +
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~-d~~~v~v~~~~~~~~~~-~~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~~ 78 (129)
T 1coz_A 1 MKKVITYGTFDLLHWGHIKLLERAKQLG-DYLVVAISTDEFNLQKQ-KKAYHSYEHRKLILETIRYVDEVIPEKNWEQKK 78 (129)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHTTS-SEEEEEEECHHHHHHHT-CCCSSCHHHHHHHHTTBTTCCEEEEECCSTTHH
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHHhC-CCeEEEEECCHHHhcCC-CCCCCCHHHHHHHHHhcCCCCEEEeCCCHHHHH
Confidence 4689999999999999999999999998 58999999985211122 24688999998632 2
Q ss_pred HHHHhcCCCEEEEeeCce
Q 034114 83 AYIKVLGKWMHVLFFGSY 100 (103)
Q Consensus 83 ~fi~~~~~~~~V~G~d~~ 100 (103)
+.+++++++++|+|+||.
T Consensus 79 ~~l~~~~~~~iv~G~D~~ 96 (129)
T 1coz_A 79 QDIIDHNIDVFVMGDDWE 96 (129)
T ss_dssp HHHHHTTCSEEEEEGGGT
T ss_pred HHHHHhCCcEEEECCCCC
Confidence 335577899999999985
No 4
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=99.68 E-value=6.1e-17 Score=107.57 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=61.1
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH---------------HHH-
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV---------------EAY- 84 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~---------------~~f- 84 (103)
|++++++|+|||+|.||+.++++|.+.++ .++|++++++....+.+ .++.+.++|.+++ .+|
T Consensus 1 m~~~~~~G~FDp~H~GH~~li~~a~~~~~-~~~v~v~~~~~~~~~~~-~~l~~~~eR~~~l~~~~~~d~v~~~~~~~~~~ 78 (132)
T 2b7l_A 1 MKRVITYGTYDLLHYGHIELLRRAREMGD-YLIVALSTDEFNQIKHK-KSYYDYEQRKMMLESIRYVDLVIPEKGWGQKE 78 (132)
T ss_dssp CCEEEEEECCCSCCHHHHHHHHHHHHTSS-EEEEEEECHHHHHHTTC-CCSSCHHHHHHHHHTBTTCCEEEEECCGGGHH
T ss_pred CeEEEEeeecCcCCHHHHHHHHHHHHhCC-cEEEEEECCHHHhccCC-CCCCCHHHHHHHHHhcCCCCEEEECCChHHHH
Confidence 46899999999999999999999999984 79999999863211222 4688999998632 223
Q ss_pred --HHhcCCCEEEEeeCce
Q 034114 85 --IKVLGKWMHVLFFGSY 100 (103)
Q Consensus 85 --i~~~~~~~~V~G~d~~ 100 (103)
+++++++++|+|+||.
T Consensus 79 ~~~~~~~~~~iv~G~D~~ 96 (132)
T 2b7l_A 79 DDVEKFDVDVFVMGHDWE 96 (132)
T ss_dssp HHHHHTTCCEEEECGGGT
T ss_pred HHHHHcCCCEEEECCCCc
Confidence 4567899999999984
No 5
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=99.68 E-value=5e-17 Score=119.06 Aligned_cols=85 Identities=22% Similarity=0.248 Sum_probs=69.1
Q ss_pred CCCCCccEEEEecccCCCCHHHHHHHHHHHHHh-cCcEEEEEecCCCCCcccccCCCCCHHHHHHHH-------------
Q 034114 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELA-RDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV------------- 81 (103)
Q Consensus 16 ~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~-~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~------------- 81 (103)
.|..++.+|++.|+||++|.||+.+|++|++++ .++++|||++|+.+...+ ..++.+.++|.+.+
T Consensus 71 ~~~~~~~~V~~~GtFD~~H~GHl~iL~rAk~lf~gD~LIVgV~~D~~v~~~K-g~pi~s~eER~e~v~~~k~VD~Vvv~~ 149 (236)
T 3hl4_A 71 TPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFK-GFTVMNENERYDAVQHCRYVDEVVRNA 149 (236)
T ss_dssp CCTTSCEEEEEEECCTTCCHHHHHHHHHHHTSSSSEEEEEEECCHHHHHHHT-CCCSSCHHHHHHHHHTBTTCSEEESSC
T ss_pred CCCCCCeEEEEeccCCCCCHHHHHHHHHHHHhcCCCeEEEEEcccHHHhhcC-CCCCCCHHHHHHHHHHhCCCCeEEECC
Confidence 344677889999999999999999999999996 258999999996442211 24689999998643
Q ss_pred -----HHHHHhcCCCEEEEeeCcee
Q 034114 82 -----EAYIKVLGKWMHVLFFGSYF 101 (103)
Q Consensus 82 -----~~fi~~~~~~~~V~G~d~~f 101 (103)
.+|+++++++++|.|+|+.+
T Consensus 150 p~~l~~d~i~~~~~d~Vv~GDd~~~ 174 (236)
T 3hl4_A 150 PWTLTPEFLAEHRIDFVAHDDIPYS 174 (236)
T ss_dssp CSSCCHHHHHHTTCCEEEEESSCCC
T ss_pred cCcCcHHHHHHcCCCEEEECCcccc
Confidence 58899999999999998654
No 6
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, coenzyme A, COA; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei} PDB: 3ikz_A* 3pxu_A*
Probab=99.64 E-value=8.2e-16 Score=109.05 Aligned_cols=77 Identities=25% Similarity=0.385 Sum_probs=63.0
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHH----------------
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE---------------- 82 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~---------------- 82 (103)
+.|++++++|+|||+|.||+.++++|++++ +.++++++.+ +.| .++.+.++|++.++
T Consensus 20 ~~mki~v~~GsFDpiH~GHl~li~~A~~~~-d~viv~v~~~---p~K---~~l~s~eeR~~ml~~~~~~v~~v~v~~f~~ 92 (187)
T 3k9w_A 20 GSMVVAVYPGTFDPLTRGHEDLVRRASSIF-DTLVVGVADS---RAK---KPFFSLEERLKIANEVLGHYPNVKVMGFTG 92 (187)
T ss_dssp CCCCEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEEECC---GGG---CCSSCHHHHHHHHHHHHTTCTTEEEEEESS
T ss_pred CCcEEEEEEEeCCcCcHHHHHHHHHHHHHC-CcEEEEEecC---Ccc---CCCCCHHHHHHHHHHHhccCCcEEEEechh
Confidence 347899999999999999999999999999 5899999986 222 46889999987443
Q ss_pred ---HHHHhcCCCEEEEe----eCceee
Q 034114 83 ---AYIKVLGKWMHVLF----FGSYFQ 102 (103)
Q Consensus 83 ---~fi~~~~~~~~V~G----~d~~f~ 102 (103)
+++++++++++|.| .||.|+
T Consensus 93 ~~~d~l~~l~~~~iv~G~r~~~Df~~E 119 (187)
T 3k9w_A 93 LLKDFVRANDARVIVRGLRAVSDFEYE 119 (187)
T ss_dssp CHHHHHHHTTCSEEEEECCTTSCHHHH
T ss_pred hHHHHHHHcCCCEEEECCCcccccchH
Confidence 45667889999999 777653
No 7
>3elb_A Ethanolamine-phosphate cytidylyltransferase; kennedy pathway, CMP, CTP, phosphoethanolamine, cytidylyltra SGC, structural genomics consortium; HET: C5P; 2.00A {Homo sapiens}
Probab=99.63 E-value=4.2e-16 Score=119.30 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=70.9
Q ss_pred CCCCCccEEEEecccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCCCCC-cccccCCCCCHHHHHHHH-----------
Q 034114 16 SPDNSYGAVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGPMLT-NKQFAELIQPVDERMRNV----------- 81 (103)
Q Consensus 16 ~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~~l~-~k~~~~~i~~f~~R~~~~----------- 81 (103)
.|....++|+++|+||++|.||+.+|++|++++ + +++|||+.|+.++ .|.+..++.++++|.+.+
T Consensus 193 ~~~~~~~iv~~~GsFD~~h~GHl~~L~rA~~l~-D~~~LiVgV~~d~~v~~~Kg~~~pi~~~~ER~~~v~~~~~vd~V~v 271 (341)
T 3elb_A 193 EPQPGETVIYVAGAFDLFHIGHVDFLEKVHRLA-ERPYIIAGLHFDQEVNHYKGKNYPIMNLHERTLSVLACRYVSEVVI 271 (341)
T ss_dssp CCCTTCEEEEEEECCTTCCHHHHHHHHHHHTTS-SSEEEEEEEECHHHHHHHHCTTCCSSCHHHHHHHHHTBTTCCEEEE
T ss_pred CCCCCCEEEEEecccCCCCHHHHHHHHHHHHhC-CCCEEEEEEccCHhhHhhcCCCCCCCCHHHHHHHHHHcCCCCCEEE
Confidence 344567789999999999999999999999998 6 9999999996553 333336899999998632
Q ss_pred -------HHHHHhcCCCEEEEeeCcee
Q 034114 82 -------EAYIKVLGKWMHVLFFGSYF 101 (103)
Q Consensus 82 -------~~fi~~~~~~~~V~G~d~~f 101 (103)
.+|+++++++++|.|.|+..
T Consensus 272 ~~~~~l~~~~~~~~~~~~iv~G~d~~~ 298 (341)
T 3elb_A 272 GAPYAVTAELLSHFKVDLVCHGKTEII 298 (341)
T ss_dssp EECSSCCHHHHHHTTCSEEEECSSCCC
T ss_pred CCCCcchHHHHHhcCCcEEEECCCCcc
Confidence 58899999999999998864
No 8
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=99.63 E-value=4.2e-16 Score=106.75 Aligned_cols=74 Identities=28% Similarity=0.520 Sum_probs=61.4
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHH-HhcCCCEEEEeeC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI-KVLGKWMHVLFFG 98 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi-~~~~~~~~V~G~d 98 (103)
+|+++|||||+|.||+.++++|.+++.+.++|++++++.++++ ..++.|+++|+++++.++ +.+.+++.|..-+
T Consensus 2 ~~i~gGtFDPiH~GHl~l~~~a~~~~~d~viv~v~~~~~~~k~--~~~~~~~~~R~~ml~~a~~~~~~~~~~i~~i~ 76 (148)
T 3do8_A 2 KVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARAR--IRSVLPFAIRAENVKRYVMRKYGFEPEIVKIT 76 (148)
T ss_dssp CEEEEECCSSCCHHHHHHHHHHHHHHTTCEEEEEECHHHHHHH--SCCCSCHHHHHHHHHHHHHHHHSSCCEEEEEC
T ss_pred EEEEEeeCCCCCHHHHHHHHHHHHhCCCEEEEEECCCcccccc--CCCCCCHHHHHHHHHHHHhcccCCcEEEEeec
Confidence 5899999999999999999999999746999999999654222 357899999999999999 8776666666543
No 9
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=99.62 E-value=2.5e-15 Score=101.93 Aligned_cols=75 Identities=15% Similarity=0.306 Sum_probs=59.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHH------------------
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE------------------ 82 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~------------------ 82 (103)
+++++++|||||+|.||+.++++|.+.+ +.+++++++++ .| ..+.|+++|+++++
T Consensus 1 ~~i~i~~GsFDpvH~GH~~l~~~a~~~~-d~v~v~~~~~p---~k---~~~~~~~~R~~ml~~a~~~~~~v~v~~~~~~~ 73 (158)
T 1qjc_A 1 QKRAIYPGTFDPITNGHIDIVTRATQMF-DHVILAIAASP---SK---KPMFTLEERVALAQQATAHLGNVEVVGFSDLM 73 (158)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS-SEEEEEEESCC---SS---CCSSCHHHHHHHHHHHTTTCTTEEEEEECSCH
T ss_pred CCEEEEEecCCCCCHHHHHHHHHHHHhC-CEEEEEECCCC---CC---CCCCCHHHHHHHHHHHHhcCCCeEEcccchHH
Confidence 4689999999999999999999999998 58999999974 22 25789999987543
Q ss_pred -HHHHhcCCCEEEEeeCceee
Q 034114 83 -AYIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 83 -~fi~~~~~~~~V~G~d~~f~ 102 (103)
+++++++++++|+|+|+.|+
T Consensus 74 ~~~l~~l~~~~~v~G~d~~~~ 94 (158)
T 1qjc_A 74 ANFARNQHATVLIRGLRAVAD 94 (158)
T ss_dssp HHHHHHTTCCEEEEECCTTCC
T ss_pred HHHHHHcCCCEEEEeccchhh
Confidence 34556778888888877654
No 10
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=99.61 E-value=1.7e-15 Score=114.57 Aligned_cols=82 Identities=23% Similarity=0.298 Sum_probs=63.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCC----CCCc--ccccCCCCCHHHHHH------------
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGP----MLTN--KQFAELIQPVDERMR------------ 79 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~----~l~~--k~~~~~i~~f~~R~~------------ 79 (103)
..+.|++.|+||++|.||+.||++|.+.|++ ..++++||++ ++.+ ......+.+.++|.+
T Consensus 19 ~~~~vvtiG~FDGvH~GHq~li~~a~~~a~~~~~~~vV~TFdphP~~v~~~~~~~~~~~Lt~~~eK~~ll~~lGVD~v~~ 98 (308)
T 3op1_A 19 PSDSVVVLGYFDGIHKGHQELFRVANKAARKDLLPIVVMTFNESPKIALEPYHPDLFLHILNPAERERKLKREGVEELYL 98 (308)
T ss_dssp CSCEEEEESCCSSCCHHHHHHHHHHHHHSSTTCCCEEEEEESSCTHHHHSCCCGGGGCBSSCHHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEEecCCcccHHHHHHHHHHHHHHHhcCCceEEEEecCCHHHHhCccccCCcccCCCHHHHHHHHHHcCCCEEEE
Confidence 3468999999999999999999999999853 4688999996 2322 122346777777653
Q ss_pred ----------HHHHHHH----hcCCCEEEEeeCcee
Q 034114 80 ----------NVEAYIK----VLGKWMHVLFFGSYF 101 (103)
Q Consensus 80 ----------~~~~fi~----~~~~~~~V~G~d~~f 101 (103)
++++|++ +++++.+|+|+||+|
T Consensus 99 ~~F~~~~a~ls~e~Fv~~ll~~l~~~~ivvG~DfrF 134 (308)
T 3op1_A 99 LDFSSQFASLTAQEFFATYIKAMNAKIIVAGFDYTF 134 (308)
T ss_dssp ECCCHHHHTCCHHHHHHHHHHHHTEEEEEEETTCCB
T ss_pred ecCCHHHHcCCHHHHHHHHHHHcCCCEEEECcCCCC
Confidence 3567766 679999999999998
No 11
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=99.60 E-value=6.8e-15 Score=101.23 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=59.6
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHH-----------------
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEA----------------- 83 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~----------------- 83 (103)
+++++++|+|||+|.||+.++++|.+.+ +.++|+++.++ .| ..+.|+++|+++++.
T Consensus 2 ~~i~i~~GsFDpvH~GH~~li~~a~~~~-d~v~v~~~~~p---~k---~~l~~~~~R~~ml~~a~~~~~~v~v~~~e~~~ 74 (169)
T 1o6b_A 2 ASIAVCPGSFDPVTYGHLDIIKRGAHIF-EQVYVCVLNNS---SK---KPLFSVEERCELLREVTKDIPNITVETSQGLL 74 (169)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEECCCC---SS---CCSSCHHHHHHHHHHHHTTCTTEEEEECSSCH
T ss_pred CcEEEEEEeeCCCCHHHHHHHHHHHHhC-CEEEEEECCCC---cc---CCCCCHHHHHHHHHHHHhcCCCEEEcccchHH
Confidence 3689999999999999999999999998 57777777542 22 357899999987654
Q ss_pred --HHHhcCCCEEEEeeCceee
Q 034114 84 --YIKVLGKWMHVLFFGSYFQ 102 (103)
Q Consensus 84 --fi~~~~~~~~V~G~d~~f~ 102 (103)
.+++++++++|+|.|+.|+
T Consensus 75 ~~~l~~l~~~~~i~G~d~~~~ 95 (169)
T 1o6b_A 75 IDYARRKNAKAILRGLRAVSD 95 (169)
T ss_dssp HHHHHHTTCSEEEEEECSGGG
T ss_pred HHHHHHcCCCEEEEcCccccc
Confidence 3456778899999998764
No 12
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=99.60 E-value=4.3e-15 Score=102.73 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=58.4
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHH------------------
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE------------------ 82 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~------------------ 82 (103)
|++++++|||||+|.||+.++++|++++ +.++|+++.++ .| .++.++++|+++++
T Consensus 2 m~i~i~~GsFDPiH~GHl~ii~~A~~~~-D~viv~v~~~~---~K---~~~~~~~eR~~ml~~a~~~~~~v~v~~~~~l~ 74 (157)
T 3nv7_A 2 QKVGIYPGTFDPVTNGHIDIIHRSSELF-EKLIVAVAHSS---AK---NPMFSLDERLKMIQLATKSFKNVECVAFEGLL 74 (157)
T ss_dssp -CEEEEEECCTTCCHHHHHHHHHHHTTS-SEEEEEEECCG---GG---CCSSCHHHHHHHHHHHHTTSTTEEEEEECSCH
T ss_pred CEEEEEEEEcCCCCHHHHHHHHHHHHhC-CceEEEEccCC---CC---CCCCCHHHHHHHHHHHhcCCCcEEEEecCchH
Confidence 5789999999999999999999999998 58999998873 33 46889999987554
Q ss_pred -HHHHhcCCCEEEEe----eCce
Q 034114 83 -AYIKVLGKWMHVLF----FGSY 100 (103)
Q Consensus 83 -~fi~~~~~~~~V~G----~d~~ 100 (103)
+++++++|+++|.| .||.
T Consensus 75 ~~~~~~~~~~~ivrG~r~~~D~~ 97 (157)
T 3nv7_A 75 AYLAKEYHCKVLVRGLRVVSDFE 97 (157)
T ss_dssp HHHHHHTTCCCBCCCCSCCCCHH
T ss_pred HHHHHHcCCCEEEECCcccchhh
Confidence 45556677777777 5654
No 13
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=99.58 E-value=4e-15 Score=113.63 Aligned_cols=81 Identities=26% Similarity=0.326 Sum_probs=64.1
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCC----CCCcccccCCCCCHHHHHH---------------
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGP----MLTNKQFAELIQPVDERMR--------------- 79 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~----~l~~k~~~~~i~~f~~R~~--------------- 79 (103)
.++|++.|+||++|.||+.||++|++.++. ..++++||++ +++.+.....+.|+++|++
T Consensus 15 ~~~vvtiG~FDGvH~GHq~Li~~a~~~a~~~~~~~vvvtFdphP~~v~~~~~~~~~L~~~~eR~~ll~~~gVD~v~v~~F 94 (338)
T 2x0k_A 15 DNSAVTIGVFDGVHRGHQKLINATVEKAREVGAKAIMVTFDPHPVSVFLPRRAPLGITTLAERFALAESFGIDGVLVIDF 94 (338)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHHHTCEEEEEEESSCHHHHHSTTCSCCBSSCHHHHHHHHHHTTCSEEEEECT
T ss_pred CCeEEEEEeCCcccHHHHHHHHHHHHHHHHcCCcEEEEEecCCHHHHcCCccCCCCCCCHHHHHHHHHhcCCCEEEEccc
Confidence 458999999999999999999999998842 5789999996 2333222345788888875
Q ss_pred -------HHHHHHHh-----cCCCEEEEeeCcee
Q 034114 80 -------NVEAYIKV-----LGKWMHVLFFGSYF 101 (103)
Q Consensus 80 -------~~~~fi~~-----~~~~~~V~G~d~~f 101 (103)
++++|++. ++++.+|+|+||+|
T Consensus 95 ~~~~a~ls~e~Fi~~il~~~l~~~~ivvG~Df~F 128 (338)
T 2x0k_A 95 TRELSGTSPEKYVEFLLEDTLHASHVVVGANFTF 128 (338)
T ss_dssp TTSSSSCCHHHHHHHCCCCCTCEEEEEEETTCEE
T ss_pred cHHHHhCCHHHHHHHHHHhhcCCCEEEEeecCCC
Confidence 24778875 57899999999998
No 14
>1mrz_A Riboflavin kinase/FMN adenylyltransferase; rossmann fold, flavin binding domain, 6-stranded beta barrel nucleotide binding domain; HET: CIT; 1.90A {Thermotoga maritima} SCOP: b.43.5.1 c.26.1.3 PDB: 1s4m_A* 1t6x_A* 1t6y_A* 1t6z_A* 2i1l_A
Probab=99.57 E-value=2.6e-15 Score=112.79 Aligned_cols=78 Identities=24% Similarity=0.238 Sum_probs=60.2
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcC--cEEEEEecCC---CCCcccccCCCCCHHHHHH------------------
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARD--RIVVGVCDGP---MLTNKQFAELIQPVDERMR------------------ 79 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~--~viV~vt~d~---~l~~k~~~~~i~~f~~R~~------------------ 79 (103)
.|++.|+||++|.||+.+|++|.+.|+. ...+++|+|+ +++.+ ...++.|+++|.+
T Consensus 1 ~vvtiG~FDgvH~GH~~ll~~a~~~a~~~~~~~vVvtFdphP~~l~~~-~~~~l~~~~eR~~ll~~lg~~~v~~F~~~a~ 79 (293)
T 1mrz_A 1 MVVSIGVFDGVHIGHQKVLRTMKEIAFFRKDDSLIYTISYPPEYFLPD-FPGLLMTVESRVEMLSRYARTVVLDFFRIKD 79 (293)
T ss_dssp -CEEEECCTTCCHHHHHHHHHHHHHHHHHTCCCEEEEESSCGGGGSTT-CCCBSSCHHHHHHHHTTTSCEEEECHHHHTT
T ss_pred CEEEEeeCccccHHHHHHHHHHHHHHHHcCCeEEEEEecCCHHHhCCC-CCCCCCCHHHHHHHHHhCCCEEEEEhHHhhc
Confidence 3689999999999999999999999842 3668899884 33332 2244666666653
Q ss_pred -HHHHHHHh--cCCCEEEEeeCcee
Q 034114 80 -NVEAYIKV--LGKWMHVLFFGSYF 101 (103)
Q Consensus 80 -~~~~fi~~--~~~~~~V~G~d~~f 101 (103)
++++|++. ++++++|+|+||+|
T Consensus 80 ls~~~Fi~~ill~~~~iVvG~Df~f 104 (293)
T 1mrz_A 80 LTPEGFVERYLSGVSAVVVGRDFRF 104 (293)
T ss_dssp CCHHHHHHHHCTTCCEEEEETTCCB
T ss_pred CCHHHHHHHHhcCCCEEEECCCCCC
Confidence 35788888 89999999999998
No 15
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3pnb_A* 4e1a_A 3lcj_A 3rba_A* 1tfu_A* 3rff_A 3rhs_A* 3uc5_A*
Probab=99.57 E-value=9.5e-15 Score=102.99 Aligned_cols=71 Identities=25% Similarity=0.323 Sum_probs=57.3
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHH----------------
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE---------------- 82 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~---------------- 82 (103)
+.|++++++|||||+|.||+.++++|.+++ ++++|+++.++ .| .++.|+++|+++++
T Consensus 19 ~~mki~i~~GsFDPiH~GHl~ii~~A~~~~-D~Viv~v~~np---~K---~~~~s~eeR~~mv~~a~~~~~~v~V~~~e~ 91 (177)
T 3nbk_A 19 SHMTGAVCPGSFDPVTLGHVDIFERAAAQF-DEVVVAILVNP---AK---TGMFDLDERIAMVKESTTHLPNLRVQVGHG 91 (177)
T ss_dssp -CCCEEEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEECCCT---TS---CCSSCHHHHHHHHHHHCTTCTTEEEEECCS
T ss_pred CCCEEEEEEEeeCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC---CC---CCCCCHHHHHHHHHHHhCCCCCEEEEecCc
Confidence 568899999999999999999999999999 69999999873 33 35789999998654
Q ss_pred ---HHHHhcCCCEEEEe
Q 034114 83 ---AYIKVLGKWMHVLF 96 (103)
Q Consensus 83 ---~fi~~~~~~~~V~G 96 (103)
+++++++++++|.|
T Consensus 92 l~vd~~~~~~a~~ivrG 108 (177)
T 3nbk_A 92 LVVDFVRSCGMTAIVKG 108 (177)
T ss_dssp CHHHHHHHTTCCEEEEE
T ss_pred hHHHHHHHcCCCEEEEC
Confidence 44445666666666
No 16
>4f3r_A Phosphopantetheine adenylyltransferase; phosphopantetheine adenylyltranferase; 2.25A {Coxiella burnetii}
Probab=99.56 E-value=6.3e-15 Score=102.27 Aligned_cols=69 Identities=20% Similarity=0.275 Sum_probs=55.1
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHH------------------H
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNV------------------E 82 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~------------------~ 82 (103)
|++++++|||||+|.||+.++++|.+++ +.++|+++.++ .| .++.|+++|++++ .
T Consensus 5 m~i~i~~GsFDPiH~GHl~li~~A~~~~-d~viv~v~~~~---~K---~~~~~~~~R~~m~~~~~~~~~v~V~~~~~l~~ 77 (162)
T 4f3r_A 5 KPIAIYPGTFDPLTNGHVDIIERALPLF-NKIIVACAPTS---RK---DPHLKLEERVNLIADVLTDERVEVLPLTGLLV 77 (162)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGC-SEEEEEECCC------------CCHHHHHHHHHHHCCCTTEEEEECCSCHH
T ss_pred eEEEEEEEEcCCCCHHHHHHHHHHHHHC-CcEEEEEecCC---cc---CCCCCHHHHHHHHHHhhCCCCEEEEeccchHH
Confidence 5789999999999999999999999999 69999999773 23 4678999998754 3
Q ss_pred HHHHhcCCCEEEEe
Q 034114 83 AYIKVLGKWMHVLF 96 (103)
Q Consensus 83 ~fi~~~~~~~~V~G 96 (103)
+++++++++++|.|
T Consensus 78 ~~~~~~~~~~~v~G 91 (162)
T 4f3r_A 78 DFAKTHQANFILRG 91 (162)
T ss_dssp HHHHHTTCCEEEEE
T ss_pred HHHHHcCCCEEEEC
Confidence 56667788888888
No 17
>3nd5_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway; 2.30A {Enterococcus faecalis} SCOP: c.26.1.0 PDB: 3nd6_A* 3nd7_A*
Probab=99.52 E-value=3.6e-14 Score=99.28 Aligned_cols=66 Identities=24% Similarity=0.395 Sum_probs=49.6
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHV 94 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V 94 (103)
|++++++|||||+|.||+.++++|.+.+ +.++|+++.++ .| .++.|+++|+++++..++.. +.+.|
T Consensus 2 m~i~i~~GsFDPiH~GHl~i~~~a~~~~-D~viv~v~~~~---~K---~~~~~~~~R~~ml~~a~~~~-~~v~v 67 (171)
T 3nd5_A 2 RKIALFPGSFDPMTNGHLNLIERSAKLF-DEVIIGVFINT---SK---QTLFTPEEKKYLIEEATKEM-PNVRV 67 (171)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHTTC-SEEEEEEEC------------CCCHHHHHHHHHHHHTTC-TTEEE
T ss_pred CeEEEEEEEccccCHHHHHHHHHHHHHC-CCeEEEEecCC---CC---CCCCCHHHHHHHHHHHHccC-CCEEE
Confidence 4789999999999999999999999998 68999997652 23 36789999998776655432 34444
No 18
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=99.51 E-value=4.3e-14 Score=98.63 Aligned_cols=70 Identities=27% Similarity=0.330 Sum_probs=54.9
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHH------------------
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE------------------ 82 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~------------------ 82 (103)
+++++++|||||+|.||+.++++|.+.+ +.++|+++.++ .| .++.|+++|+++++
T Consensus 3 ~ki~i~~GsFDPiH~GHl~i~~~a~~~~-d~viv~v~~~p---~K---~~~~~~~~R~~ml~~a~~~~~~v~v~~~e~~t 75 (168)
T 3f3m_A 3 HTIAVIPGSFDPITYGHLDIIERSTDRF-DEIHVCVLKNS---KK---EGTFSLEERMDLIEQSVKHLPNVKVHQFSGLL 75 (168)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHGGGS-SEEEEEECC-----------CCSCHHHHHHHHHHHTTTCTTEEEEECCSCH
T ss_pred ceEEEEEEEcCcCCHHHHHHHHHHHHhC-CEEEEEEcCCC---CC---CCCCCHHHHHHhHHHHhcCCCCEEEEEcCCCH
Confidence 4689999999999999999999999998 68999999763 23 46789999997654
Q ss_pred -HHHHhcCCCEEEEee
Q 034114 83 -AYIKVLGKWMHVLFF 97 (103)
Q Consensus 83 -~fi~~~~~~~~V~G~ 97 (103)
++++++++++.|.|.
T Consensus 76 vd~~~~l~~~~~I~G~ 91 (168)
T 3f3m_A 76 VDYCEQVGAKTIIRGL 91 (168)
T ss_dssp HHHHHHHTCCEEEEEE
T ss_pred HHHHHHcCCCEEEEcC
Confidence 445566777777773
No 19
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=99.48 E-value=1.9e-13 Score=92.81 Aligned_cols=57 Identities=26% Similarity=0.504 Sum_probs=45.0
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHH
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYI 85 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi 85 (103)
++++|+|||+|.||+.++++|.+.+ +.++++++.++ . |. ...+.|+++|+++++..+
T Consensus 3 ~v~~GsFdp~H~GH~~l~~~a~~~~-d~v~v~~~~~p-~--k~-~~~~~~~~~R~~ml~~a~ 59 (160)
T 1od6_A 3 VVYPGSFDPLTNGHLDVIQRASRLF-EKVTVAVLENP-S--KR-GQYLFSAEERLAIIREAT 59 (160)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHS-SEEEEEEECC---------CCSSCHHHHHHHHHHHT
T ss_pred EEEEeeeCCCCHHHHHHHHHHHHHC-CEEEEEEcCCC-C--CC-CCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999999998 58899999663 2 21 125789999998765544
No 20
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=99.47 E-value=1.9e-13 Score=95.23 Aligned_cols=74 Identities=15% Similarity=0.142 Sum_probs=59.2
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEE-ecCCCCCcccccCCCCCHHHHHHHHHHHHHhcC---CCEEEEee
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGV-CDGPMLTNKQFAELIQPVDERMRNVEAYIKVLG---KWMHVLFF 97 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~v-t~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~---~~~~V~G~ 97 (103)
++++++|+|||+|.||+.++++|.+.+ +.+++++ ++++..+ + ..+.++++|.++++..+.... +.+.|+|+
T Consensus 4 ~~~i~~G~Fdp~H~GH~~l~~~a~~~~-d~v~v~v~~~~~p~~--~--~~~~~~~~R~~~~~~a~~~~~~~~~~v~v~~~ 78 (181)
T 1ej2_A 4 MRGLLVGRMQPFHRGHLQVIKSILEEV-DELIICIGSAQLSHS--I--RDPFTAGERVMMLTKALSENGIPASRYYIIPV 78 (181)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHTTTC-SEEEEEECSTTCCSS--S--SSCSCHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred eEEEEEEEcCCcCHHHHHHHHHHHHhC-CeeEEEECCCCCCcC--C--CCCCCHHHHHHHHHHHHhhCCCCCCcEEEEec
Confidence 479999999999999999999999997 5788887 6654332 1 235699999999999887653 57888998
Q ss_pred Cce
Q 034114 98 GSY 100 (103)
Q Consensus 98 d~~ 100 (103)
|..
T Consensus 79 d~~ 81 (181)
T 1ej2_A 79 QDI 81 (181)
T ss_dssp CCC
T ss_pred Ccc
Confidence 743
No 21
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=99.47 E-value=1.8e-13 Score=95.21 Aligned_cols=70 Identities=26% Similarity=0.347 Sum_probs=56.3
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEee
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFF 97 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~ 97 (103)
...+++++|||||+|.||+.++++|.+++ +.++|+++.++ .+ +++.|+++|+++++..++.. +.+.|..+
T Consensus 11 ~~~i~i~~GsFdP~H~GHl~l~~~A~~~~-D~viv~v~~~~---~k---k~~~~~~~R~~ml~~a~~~~-~~v~v~~~ 80 (173)
T 1vlh_A 11 HHMKAVYPGSFDPITLGHVDIIKRALSIF-DELVVLVTENP---RK---KCMFTLEERKKLIEEVLSDL-DGVKVDVH 80 (173)
T ss_dssp --CEEEEEECCTTCCHHHHHHHHHHHTTC-SEEEEEEECCT---TC---CCSSCHHHHHHHHHHHTTTC-TTEEEEEE
T ss_pred cceEEEEEEEECcCcHHHHHHHHHHHHHC-CEEEEEEeCCC---CC---CCCCCHHHHHHHHHHHhcCC-CCEEEecC
Confidence 45689999999999999999999999998 69999999973 33 25789999999888777654 55665544
No 22
>1f9a_A Hypothetical protein MJ0541; alpha/beta, transferase, structural genomics; HET: ATP; 2.00A {Methanocaldococcus jannaschii} SCOP: c.26.1.3
Probab=99.44 E-value=3.6e-13 Score=92.89 Aligned_cols=71 Identities=23% Similarity=0.217 Sum_probs=56.2
Q ss_pred EEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEE-ecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEeeC
Q 034114 23 AVVLGGTFDRLHDGHRLFLKASAELARDRIVVGV-CDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLFFG 98 (103)
Q Consensus 23 ~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~v-t~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G~d 98 (103)
+++++|+|||+|.||+.++++|.+.+ +.+++++ ++++..+. ....++++|+++++..++....++.+.+.|
T Consensus 2 i~i~~GsFdp~H~GH~~l~~~a~~~~-d~v~v~v~~~~~p~~~----~~~~~~~~R~~m~~~~~~~~~~~v~v~~~d 73 (168)
T 1f9a_A 2 RGFIIGRFQPFHKGHLEVIKKIAEEV-DEIIIGIGSAQKSHTL----ENPFTAGERILMITQSLKDYDLTYYPIPIK 73 (168)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHTTTC-SEEEEEECSTTCCSSS----SCCSCHHHHHHHHHHHHTTSSCEEEEEECC
T ss_pred EEEEEEecCCcCHHHHHHHHHHHHhC-CeEEEEEcCCCCCCCC----CCCCCHHHHHHHHHHHHhcCCCceEEEeeC
Confidence 68999999999999999999999997 5788887 77653321 224699999999999998762266666654
No 23
>2qtr_A Nicotinate (nicotinamide) nucleotide adenylyltran; NAD, nucleotidyltransferase, pyridine nucleotide biosynthesi transferase; HET: NXX; 1.70A {Bacillus anthracis} PDB: 3dv2_A 3mla_A* 3hfj_A* 3mlb_A* 3mmx_A* 3e27_A* 2qtn_A* 2qtm_A*
Probab=99.40 E-value=5.4e-13 Score=92.78 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=48.6
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
++++++|+|||+|.||+.++++|.+.+. +.++++++.++..+.. ..+.++++|+++++..++
T Consensus 3 ~i~i~~GsFDPvH~GH~~li~~a~~~~~~d~v~~~~~~~~~~k~~---~~~~~~~~R~~ml~~~~~ 65 (189)
T 2qtr_A 3 KIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQG---RNITSVESRLQMLELATE 65 (189)
T ss_dssp EEEEEEECCSSCCHHHHC-CHHHHHHTTCSEEEEEECSSCTTCTT---SCCCCHHHHHHHHHHHHT
T ss_pred eEEEEecCcccccHHHHHHHHHHHHHcCCCEEEEEECCCCCCccC---CCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999999999872 3788888877655321 347899999987766554
No 24
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=99.40 E-value=7.9e-13 Score=92.81 Aligned_cols=62 Identities=26% Similarity=0.251 Sum_probs=45.2
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
++++++|+|||+|.||+.++++|.+.+. +.+++++++++..+.. ..+.++++|+++++..++
T Consensus 8 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~~---~~~~~~~~R~~ml~~a~~ 70 (194)
T 1kam_A 8 KIGIFGGTFDPPHNGHLLMANEVLYQAGLDEIWFMPNQIPPHKQN---EDYTDSFHRVEMLKLAIQ 70 (194)
T ss_dssp EEEEEEECCSSCCHHHHHHHHHHHHHTTCSEEEEEECCCC------------CHHHHHHHHHHHHT
T ss_pred EEEEEEeccccccHHHHHHHHHHHHHhCCCEEEEEECCCCCCcCC---cCCCCHHHHHHHHHHHHc
Confidence 6899999999999999999999999872 4788889987643211 347899999987765543
No 25
>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B
Probab=99.40 E-value=7.3e-13 Score=99.16 Aligned_cols=75 Identities=15% Similarity=0.194 Sum_probs=58.7
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc---CCCEEEE-e
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL---GKWMHVL-F 96 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~---~~~~~V~-G 96 (103)
+++++++|||||+|.||+.++++|.+.+ +.++|++++++..+.+ ....|+++|+++++..++.. .+++.++ |
T Consensus 7 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~-d~~~~~v~~~~~~~~~---~~~~~~~~R~~m~~~~~~~~~~~~~~~~~~~~ 82 (352)
T 2qjt_B 7 YDISVFIGRFQPFHKGHLHNIIIALQNS-KKVIINIGSCFNTPNI---KNPFSFEQRKQMIESDLQVAGIDLDTVVIEPL 82 (352)
T ss_dssp EEEEEEEECCTTCCHHHHHHHHHHHHSE-EEEEEEEEEESCCCCS---SSCSCHHHHHHHHHHHHHHTTCCGGGEEEEEE
T ss_pred ccEEEEEEecCCCChHHHHHHHHHHHhC-CcEEEEECCCCCCccc---CCCCCHHHHHHHHHHHhccccCccceEEEEEc
Confidence 4789999999999999999999999998 5889999987543322 34579999999999999754 2455444 4
Q ss_pred eCc
Q 034114 97 FGS 99 (103)
Q Consensus 97 ~d~ 99 (103)
.|+
T Consensus 83 ~d~ 85 (352)
T 2qjt_B 83 ADY 85 (352)
T ss_dssp ECC
T ss_pred CCC
Confidence 453
No 26
>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}
Probab=99.38 E-value=9.7e-13 Score=97.84 Aligned_cols=67 Identities=22% Similarity=0.284 Sum_probs=50.9
Q ss_pred CCCC-ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 17 PDNS-YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 17 ~~~~-~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
|.++ |++++++|+|||+|.||+.++++|.+.+ +.+++++++++.-..+ ....++++|+++++..+..
T Consensus 2 ~~~~~~~~~i~~G~FdP~H~GH~~li~~a~~~~-d~v~v~v~~~~~p~~~---~~~~~~~~R~~m~~~~~~~ 69 (341)
T 2qjo_A 2 PMQTKYQYGIYIGRFQPFHLGHLRTLNLALEKA-EQVIIILGSHRVAADT---RNPWRSPERMAMIEACLSP 69 (341)
T ss_dssp CCSSSEEEEEEEECCTTCCHHHHHHHHHHHHHE-EEEEEEEEEETCCCCS---SSCSCHHHHHHHHHTTSCH
T ss_pred CccceeeEEEEEEEeCCCCHHHHHHHHHHHHhC-CeEEEEECCcccCCCC---CCCCCHHHHHHHHHHHhhh
Confidence 4444 5789999999999999999999999998 5888888887422112 2247899999887765543
No 27
>2h29_A Probable nicotinate-nucleotide adenylyltransferase; NADD, namnat, nmnat; HET: DND; 2.00A {Staphylococcus aureus} PDB: 2h2a_A*
Probab=99.37 E-value=1.3e-12 Score=91.39 Aligned_cols=63 Identities=17% Similarity=0.213 Sum_probs=49.7
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHh
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKV 87 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~ 87 (103)
++++++|+|||+|.||+.++++|.+.+. +.+++.++.++..+.+ ..+.++++|+++++..++.
T Consensus 3 ~~~v~~GsFdp~H~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~~---~~~~~~~~R~~m~~~a~~~ 66 (189)
T 2h29_A 3 KIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKH---HDFIDVQHRLTMIQMIIDE 66 (189)
T ss_dssp EEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEEEECSBCTTSCC---CSSCCCHHHHHHHHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEECCCCCCCcC---CCCCCHHHHHHHHHHHHcC
Confidence 6799999999999999999999999872 4677777777655432 3578999999887766654
No 28
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.37 E-value=6.7e-13 Score=100.57 Aligned_cols=75 Identities=20% Similarity=0.255 Sum_probs=58.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCc---ccc-cCCCCCHHHHHHHHHHHHHhcCCC-EEEE
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTN---KQF-AELIQPVDERMRNVEAYIKVLGKW-MHVL 95 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~---k~~-~~~i~~f~~R~~~~~~fi~~~~~~-~~V~ 95 (103)
+++++++|||||+|.||+.++++|.+.+ +.++|+++.++..+. +.. .....|+++|+++++..++.. +. +.|.
T Consensus 2 ~~~~i~~GtFdP~h~GHl~~~~~a~~~~-d~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~R~~m~~~~~~~~-~~~~~v~ 79 (365)
T 1lw7_A 2 KKVGVIFGKFYPVHTGHINMIYEAFSKV-DELHVIVCSDTVRDLKLFYDSKMKRMPTVQDRLRWMQQIFKYQ-KNQIFIH 79 (365)
T ss_dssp CCEEEEEECCSSCCHHHHHHHHHHHTTC-SEEEEEEEECHHHHHHHHHHTTCSSCCCHHHHHHHHHHHTSTT-TTTEEEE
T ss_pred CcEEEEEEeeCCCCHHHHHHHHHHHHHC-CEEEEEECCCCccccccccccccCCCCCHHHHHHHHHHHhhcC-CCcEEEE
Confidence 4689999999999999999999999998 699999999853210 111 022489999999999998764 55 7776
Q ss_pred ee
Q 034114 96 FF 97 (103)
Q Consensus 96 G~ 97 (103)
.+
T Consensus 80 ~~ 81 (365)
T 1lw7_A 80 HL 81 (365)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 29
>1k4m_A NAMN adenylyltransferase; nucleotidyltransferase; HET: NAD CIT; 1.90A {Escherichia coli} SCOP: c.26.1.3 PDB: 1k4k_A*
Probab=99.35 E-value=2.9e-12 Score=91.15 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=44.9
Q ss_pred E-EEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHH
Q 034114 23 A-VVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVE 82 (103)
Q Consensus 23 ~-v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~ 82 (103)
+ ++++|||||+|.||+.++++|.+.+. +.++++++.++..+. ..+.++++|+++++
T Consensus 4 i~~i~~GsFdPiH~GH~~l~~~a~~~~~~d~v~~~~~~~~~~k~----~~~~~~~~R~~ml~ 61 (213)
T 1k4m_A 4 LQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRP----QPEANSVQRKHMLE 61 (213)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHHHTCSCEEEEECSSCTTSC----CCSSCHHHHHHHHH
T ss_pred EEEEEEeCcCCCCHHHHHHHHHHHHHcCCCEEEEEECCCCCCCC----CCCCCHHHHHHHHH
Confidence 5 89999999999999999999999872 478888887755532 24788899986544
No 30
>1yum_A 'probable nicotinate-nucleotide adenylyltransferase; alpha/beta domain; HET: CIT NCN; 1.70A {Pseudomonas aeruginosa} PDB: 1yul_A* 1yun_A*
Probab=99.33 E-value=6.4e-12 Score=91.67 Aligned_cols=70 Identities=23% Similarity=0.203 Sum_probs=55.1
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
+++++++|||||+|.||+.++++|.+.+. +.+++++++++.. | ...+.++++|+++++..++.. +.+.|.
T Consensus 23 ~~i~i~~GsFdPiH~GHl~li~~a~~~~~ld~v~v~~~~~~p~--K--~~~~~~~~~R~~ml~~a~~~~-~~v~v~ 93 (242)
T 1yum_A 23 KRIGLFGGTFDPVHIGHMRSAVEMAEQFALDELRLLPNARPPH--R--ETPQVSAAQRLAMVERAVAGV-ERLTVD 93 (242)
T ss_dssp CEEEEEEECCTTCCHHHHHHHHHHHHHHTCSEEEEEECCCCGG--G--SCTTCCHHHHHHHHHHHHTTC-TTEEEC
T ss_pred ceEEEEEeeCcHhhHHHHHHHHHHHHHcCCCEEEEEEcCCCCC--C--CCCCCCHHHHHHHHHHHhcCC-CeEEEe
Confidence 45799999999999999999999999872 4899999998533 2 135789999999888777553 445444
No 31
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=99.27 E-value=6.6e-12 Score=87.99 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=49.9
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcC-CCEEEE
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLG-KWMHVL 95 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~-~~~~V~ 95 (103)
+++++||||||+|.||+.+++ |.+.. +.++++++.+.. .+ ..+.|+++|+++++..++... +.+.|.
T Consensus 3 ~igi~gGsFdPih~GHl~i~~-a~~~~-d~v~~~p~~~~~--~k---~~~~~~~~R~~m~~~a~~~~~~~~~~v~ 70 (177)
T 3h05_A 3 KIAIFGSAFNPPSLGHKSVIE-SLSHF-DLVLLEPSIAHA--WG---KNMLDYPIRCKLVDAFIKDMGLSNVQRS 70 (177)
T ss_dssp EEEEEEECCSSCCHHHHHHHT-TCTTS-SEEEEEECC------------CCCHHHHHHHHHHHHHHHCCTTEEEC
T ss_pred EEEEEEeccchhhHHHHHHHH-HHHHC-CEEEEEECCCCC--CC---CCCCCHHHHHHHHHHHHhcCCCCcEEEE
Confidence 579999999999999999998 76665 689999988621 12 347899999999988887653 455553
No 32
>1nup_A FKSG76; NAD biosynthesis, mitochondria, pyridine adenylyltransferase catalysis, transferase; HET: NMN; 1.90A {Homo sapiens} SCOP: c.26.1.3 PDB: 1nuq_A* 1nur_A 1nus_A* 1nut_A* 1nuu_A*
Probab=99.26 E-value=1.5e-11 Score=90.00 Aligned_cols=74 Identities=11% Similarity=0.151 Sum_probs=54.2
Q ss_pred CccEEEEecccCCCCHHHHHHHHHHHHHhcC-c--EEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 20 SYGAVVLGGTFDRLHDGHRLFLKASAELARD-R--IVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 20 ~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~-~--viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
.+++++++|||||+|.||+.++++|.+.++. . .+|++++.+...+..+ ..+.++++|+++++..++.. +.+.|.
T Consensus 5 ~~~i~i~~GsFdPiH~GHl~l~~~a~~~~~~~~~~~vv~~~~~p~~~~~~k-~~~~~~~~R~~m~~~ai~~~-~~~~v~ 81 (252)
T 1nup_A 5 IPVVLLACGSFNPITNMHLRMFEVARDHLHQTGMYQVIQGIISPVNDTYGK-KDLAASHHRVAMARLALQTS-DWIRVD 81 (252)
T ss_dssp EEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTTSEEEEEEEEEECCTTCSS-SCCCCHHHHHHHHHHHGGGC-SSEEEC
T ss_pred CceEEEEEecCcHhhHHHHHHHHHHHHHhcccCCceEEEEEEeCCCCcccC-CCCCCHHHHHHHHHHHhcCC-CceEee
Confidence 3678999999999999999999999998732 1 5555665543222111 34789999999999988764 666553
No 33
>1kqn_A Nmnat, nicotinamide mononucleotide adenylyl transferase; nucleotidyltransferase superfamily; HET: NAD; 2.20A {Homo sapiens} SCOP: c.26.1.3 PDB: 1kqo_A* 1kr2_A* 1kku_A 1gzu_A*
Probab=99.14 E-value=7.4e-11 Score=87.76 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=51.9
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhc-Cc--EEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELAR-DR--IVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~--viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
...++++++|||||+|.||+.++++|.+.++ +. .++++++.+.-.+..+ ..+.++++|+++++..++.. +.+.|.
T Consensus 6 ~~~~i~i~gGsFDPiH~GHl~l~~~a~~~~~~d~~~~vvv~~f~P~~~~~~K-~~l~s~~~R~~ml~~ai~~~-~~~~v~ 83 (279)
T 1kqn_A 6 KTEVVLLACGSFNPITNMHLRLFELAKDYMNGTGRYTVVKGIISPVGDAYKK-KGLIPAYHRVIMAELATKNS-KWVEVD 83 (279)
T ss_dssp CEEEEEEEEECCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEEEEECCGGGCC-TTCCCHHHHHHHHHHHTTTC-SSEEEC
T ss_pred CCceEEEEEeeecHhhHHHHHHHHHHHHHhcccCCceEEEEEEcCCCCCccc-cCCCCHHHHHHHHHHHhcCC-CcEEEe
Confidence 4467899999999999999999999998863 22 2333233221111111 34789999999999988764 566664
No 34
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural genomics, PSI, MCS protein structure initiative; 1.91A {Methanocaldococcus jannaschii}
Probab=98.95 E-value=3.6e-09 Score=81.37 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=53.0
Q ss_pred CCccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC-CCcccccCCCCCHHHHHH------------------
Q 034114 19 NSYGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM-LTNKQFAELIQPVDERMR------------------ 79 (103)
Q Consensus 19 ~~~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~-l~~k~~~~~i~~f~~R~~------------------ 79 (103)
..+++|++.|.|||+|.||+.++++|++ . +.+++++|.+-. +... ...+.+..+|.+
T Consensus 50 ~~~~~v~~lG~FDg~H~GHq~lI~~a~~-~-~~~~~Vms~~~~~vqrg--~~~l~~~~~R~~~~~~~GvD~vielpF~~~ 125 (357)
T 3gmi_A 50 NKDKIVCDFTEYNPLHKGHKYALEKGKE-H-GIFISVLPGPLERSGRG--IPYFLNRYIRAEMAIRAGADIVVEGPPMGI 125 (357)
T ss_dssp TCCCEEEEECCCTTCCHHHHHHHHHHHT-S-SEEEEEECCTTSBCTTS--SBCSSCHHHHHHHHHHHTCSEEEECCCGGG
T ss_pred CCCCEEEEEEecCccCHHHHHHHHHHHH-c-CCeEEEEcCchHHhcCC--CCcCCCHHHHHHHHHHCCCCEEEEcCchhh
Confidence 4567999999999999999999999998 4 466666765420 2211 234566666653
Q ss_pred -HHHHHHH-------hcCCCEEEEee
Q 034114 80 -NVEAYIK-------VLGKWMHVLFF 97 (103)
Q Consensus 80 -~~~~fi~-------~~~~~~~V~G~ 97 (103)
++++|++ +++++.+|+|+
T Consensus 126 ~s~~~Fv~~~v~ll~~l~~~~iv~G~ 151 (357)
T 3gmi_A 126 MGSGQYMRCLIKMFYSLGAEIIPRGY 151 (357)
T ss_dssp SCHHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 2345554 57999999998
No 35
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=98.80 E-value=1.9e-08 Score=75.13 Aligned_cols=68 Identities=15% Similarity=0.204 Sum_probs=43.8
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC--CCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHV 94 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~--~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V 94 (103)
+++.+.||||++|.||+.|+++|++.+ +.++|.+..+| +.+++.....+.+++++.+. ++..+.|+++
T Consensus 22 ~~V~~vgtfdgLH~GH~sLI~~A~~~a-d~vVVSffvnP~qf~~~ed~~~yp~tle~d~~l----L~~~GVD~vf 91 (280)
T 2ejc_A 22 KTIGFVPTMGYLHEGHLSLVRRARAEN-DVVVVSIFVNPTQFGPNEDYERYPRDFERDRKL----LEKENVDCIF 91 (280)
T ss_dssp CCEEEEEECSCCCHHHHHHHHHHHHHS-SEEEEEECCCGGGCCTTSCGGGSCCCHHHHHHH----HHTTTCSEEE
T ss_pred CEEEEEcCCccccHHHHHHHHHHHHhC-CEEEEEEeCChHHhcCCcccccCCCCHHHHHHH----HHHCCCCEEE
Confidence 346666999999999999999999998 45555554454 34443222335677777643 3344444443
No 36
>1jhd_A Sulfate adenylyltransferase; sulfurylase, APS, chemoautotroph, bromide; 1.70A {Sulfur-oxidizing endosymbiont ofriftia pachyptila} SCOP: b.122.1.3 c.26.1.5
Probab=98.33 E-value=3.3e-06 Score=65.62 Aligned_cols=71 Identities=23% Similarity=0.205 Sum_probs=53.2
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhc-CcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc-C-CCEEEEeeC
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELAR-DRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL-G-KWMHVLFFG 98 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~-~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~-~-~~~~V~G~d 98 (103)
++|+.+|||||+|.||..++++|.+... +.+++.++..+ .+ .-..|.+.|+++.+.+++.+ . ..+.+..++
T Consensus 193 ~~VvafqTrNPiHrgH~~l~~~Ale~~~~D~vll~P~~g~-~K-----~~di~~~~R~~~~~~~~~~~~p~~~v~l~~~p 266 (396)
T 1jhd_A 193 SKVVAFQTRNPMHRAHEELCRMAMESLDADGVVVHMLLGK-LK-----KGDIPAPVRDAAIRTMAEVYFPPNTVMVTGYG 266 (396)
T ss_dssp SSEEEEEESSCCCHHHHHHHHHHHHHHTCSEEEEEEEECC-CC-----TTCCCHHHHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred ceEEEeccCCCCchHHHHHHHHHHHHcCCCeEEEEECCCC-CC-----CCCCCHHHHHHHHHHHHHhcCCCcceEEEech
Confidence 5788899999999999999999999873 36777777763 22 23478899999988888874 2 234444443
No 37
>1v47_A ATP sulfurylase; product binding complex, zinc, riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; HET: ADX; 2.49A {Thermus thermophilus} SCOP: b.122.1.3 c.26.1.5
Probab=98.11 E-value=1.2e-05 Score=61.53 Aligned_cols=60 Identities=25% Similarity=0.235 Sum_probs=47.0
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
++|+..|||||+|.||..+.++|.+.. +.+++.++..+ . | .-..|.+.|+++.+.+++.+
T Consensus 156 ~~VvafqTrNPiHrgH~~l~~~ale~~-d~vll~P~~g~-~--K---~~d~~~~~R~~~~~~~i~~~ 215 (349)
T 1v47_A 156 RKVVAFQTRNAPHRAHEYLIRLGLELA-DGVLVHPILGA-K--K---PDDFPTEVIVEAYQALIRDF 215 (349)
T ss_dssp CSEEEEEESSCCCHHHHHHHHHHHHHS-SEEEEEEBCSC-C--C---TTSCCHHHHHHHHHHHHHHH
T ss_pred CeEEEeecCCCCchHHHHHHHHHHHhC-CcEEEEECCCC-C--C---CCCCCHHHHHHHHHHHHhhc
Confidence 578889999999999999999999985 57777777653 1 2 23478888888877777754
No 38
>1v8f_A Pantoate-beta-alanine ligase; rossmann fold, dimer, structural genomics, riken STR genomics/proteomics initiative, RSGI; HET: P6G; 1.90A {Thermus thermophilus} SCOP: c.26.1.4 PDB: 1ufv_A
Probab=97.66 E-value=0.00015 Score=53.96 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=39.8
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC--CCCcccccCCCCCHHHHHHHH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRNV 81 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~--~l~~k~~~~~i~~f~~R~~~~ 81 (103)
...|.+.|+ +|.||+.|+++|.+.+ +.++|.+..+| +.+++.....+.+++++.+.+
T Consensus 19 i~~VpTmG~---lH~GH~~Li~~A~~~a-~~vVvsff~nP~qf~~~ed~~~yp~tle~d~~ll 77 (276)
T 1v8f_A 19 VGFVPTMGY---LHRGHLALVERARREN-PFVVVSVFVNPLQFGPGEDYHRYPRDLERDRALL 77 (276)
T ss_dssp EEEEEECSS---CCHHHHHHHHHHHHHC-SEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHH
T ss_pred ceEEEeCCC---ccHHHHHHHHHHHHhC-CEEEEEEECCHHHhCCCcccCCCCcCHHHHHHHH
Confidence 346778888 9999999999999998 45555555554 334433234567888887644
No 39
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=97.37 E-value=0.00045 Score=51.96 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=35.9
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHH-HhcCcEEEEEecCC--CCCcccccCCCCCHHHHHHH
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAE-LARDRIVVGVCDGP--MLTNKQFAELIQPVDERMRN 80 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~-~~~~~viV~vt~d~--~l~~k~~~~~i~~f~~R~~~ 80 (103)
+++.+..|+..+|.||+.|+++|.+ .+ +.++|.+--+| +.+++.....+.+++++.+.
T Consensus 33 ~~vg~VpTmG~LH~GH~sLI~~A~~~~a-~~vVvSffvnP~qF~~~ed~~~yprtle~d~~l 93 (301)
T 3cov_A 33 RRVMLVPTMGALHEGHLALVRAAKRVPG-SVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQ 93 (301)
T ss_dssp CEEEEEEECSCCCHHHHHHHHHHHTSTT-EEEEEEECCCGGGCCSSSHHHHSCCCHHHHHHH
T ss_pred CcEEEEecCCcccHHHHHHHHHHHHhcC-CEEEEEEcCChhhcCCccccccCCCCHHHHHHH
Confidence 4455666777799999999999998 77 34443333333 33433222335677776643
No 40
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=97.27 E-value=0.00072 Score=50.45 Aligned_cols=50 Identities=24% Similarity=0.377 Sum_probs=33.2
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecC--C--CCCcccccCCCCCHHHHHH
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDG--P--MLTNKQFAELIQPVDERMR 79 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d--~--~l~~k~~~~~i~~f~~R~~ 79 (103)
|.+.|. +|.||+.|+++|.+.++ .|++|+. | +.+++.....+.+++++.+
T Consensus 28 VpTmG~---lH~GH~~LI~~a~~~a~---~vVvsffvnP~qf~~~ed~~~yprtle~d~~ 81 (283)
T 3ag6_A 28 IPTMGA---LHDGHLTMVRESVSTND---ITIVSVFVNPLQFGPNEDFDAYPRQIDKDLE 81 (283)
T ss_dssp EEECSS---CCHHHHHHHHHHHTTSS---EEEEEECCCGGGCCTTSSTTTSCCCHHHHHH
T ss_pred EECCcc---ccHHHHHHHHHHHHhCC---EEEEEEeCChhhcCCccccccCCCCHHHHHH
Confidence 448886 99999999999999983 4555554 3 3343322234566766654
No 41
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=97.17 E-value=0.00067 Score=50.64 Aligned_cols=60 Identities=17% Similarity=0.337 Sum_probs=41.3
Q ss_pred ccEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC--CCcccccCCCCCHHHHHHHH
Q 034114 21 YGAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMRNV 81 (103)
Q Consensus 21 ~~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~--l~~k~~~~~i~~f~~R~~~~ 81 (103)
.+++.+..|..++|.||+.|+++|.+.+ +.++|.+.-+|. .+++.......+++++.+.+
T Consensus 21 g~~ig~VPTMG~LH~GH~sLi~~A~~~~-d~vVvSifvnP~qf~~~ed~~~yprt~e~d~~ll 82 (283)
T 3uk2_A 21 QNRTAFVPTMGNLHEGHLSLMRLARQHG-DPVVASIFVNRLQFGPNEDFDKYPRTLQEDIEKL 82 (283)
T ss_dssp CSSCEEEEECSSCCHHHHHHHHHHHTTC-SSEEEEECCCGGGSCTTSCTTTSCCCHHHHHHHH
T ss_pred CCeEEEECCCCcccHHHHHHHHHHHHhC-CEEEEEEcCCHHHcCCcccccccCCCHHHHHHHH
Confidence 4457778899999999999999999998 465555554542 23333344556777776543
No 42
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=96.45 E-value=0.015 Score=44.00 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=35.5
Q ss_pred cEEE--EecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC--CCcccccCCCCCHHHHHH
Q 034114 22 GAVV--LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM--LTNKQFAELIQPVDERMR 79 (103)
Q Consensus 22 ~~v~--~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~--l~~k~~~~~i~~f~~R~~ 79 (103)
++++ +.| .+|.||+.|+++|.+.+ +.++|.+--||. -+++.....-.+++...+
T Consensus 44 ~IgfVPTMG---~LH~GHlsLi~~A~~~~-d~vVVSIFVNP~QF~~~EDl~~YPRtle~D~~ 101 (314)
T 3inn_A 44 KIGFVPTMG---YLHKGHLELVRRARVEN-DVTLVSIFVNPLQFGANEDLGRYPRDLERDAG 101 (314)
T ss_dssp CEEEEEECS---SCCHHHHHHHHHHHHHC-SEEEEEECCCGGGSCTTSSTTTCCCCHHHHHH
T ss_pred eEEEEcCCC---ccCHHHHHHHHHHHHhC-CEEEEEECCChhhcCCCccccccCCCHHHHHH
Confidence 4455 555 69999999999999998 577777776653 233332233345555543
No 43
>1r6x_A ATP:sulfate adenylyltransferase; APS kinase-like domain; 1.40A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5
Probab=96.24 E-value=0.016 Score=45.00 Aligned_cols=61 Identities=23% Similarity=0.181 Sum_probs=38.7
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
++|+...|++|+|.||..++.++.....+.+.+-.... ..| .--.|.+.|++..+.+++.+
T Consensus 188 ~~VvafqtrNP~HraH~e~~~r~a~e~~~~lllhPlvG---~tK---~~Dip~~vR~~~~~~~l~~y 248 (395)
T 1r6x_A 188 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVG---LTK---PGDIDHHTRVRVYQEIIKRY 248 (395)
T ss_dssp CCEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCBCS---BCC---TTCCCHHHHHHHHHHHGGGS
T ss_pred CcEEEeccCCCcchhhHHHHHHHHHHcCCcEEEEECCC---CCC---CCCCCHHHHHHHHHHHHHhC
Confidence 57888999999999997777776655333333332222 111 12367777777776666655
No 44
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.10 E-value=0.029 Score=44.65 Aligned_cols=61 Identities=23% Similarity=0.176 Sum_probs=40.0
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
++|+...|++|+|.||..++.++.....+.+.+-+.... .| .--.|.+.|++..+.+++.+
T Consensus 189 ~~v~afqtrnP~HraH~e~~~~~a~e~~~~lll~pl~g~---~k---~~di~~~~r~~~~~~~~~~y 249 (511)
T 1g8f_A 189 DRVVAFQTRNPMHRAHRELTVRAAREANAKVLIHPVVGL---TK---PGDIDHHTRVRVYQEIIKRY 249 (511)
T ss_dssp CCEEEEEESSCCCHHHHHHHHHHHHHHTCEEEEEEBCSB---CS---TTCCCHHHHHHHHHHHGGGS
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHcCCcEEEEECCCC---CC---CCCCCHHHHHHHHHHHHHhC
Confidence 568889999999999977666665553345555544431 11 12267777777777777666
No 45
>3q12_A Pantoate--beta-alanine ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: PAF; 1.58A {Yersinia pestis} SCOP: c.26.1.4 PDB: 3q10_A* 3mue_A 1iho_A 3guz_A*
Probab=95.96 E-value=0.016 Score=43.29 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=29.5
Q ss_pred ccEEE--EecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 034114 21 YGAVV--LGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPM 61 (103)
Q Consensus 21 ~~~v~--~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~ 61 (103)
.++++ +.|. +|.||+.|+++|.+.+ +.++|.+--||.
T Consensus 25 ~~IgfVPTMG~---LH~GHlsLv~~Ar~~~-d~vVVSIFVNP~ 63 (287)
T 3q12_A 25 KRIALVPTMGN---LHEGHMTLVDEAKTRA-DVVVVTIFVNPL 63 (287)
T ss_dssp CCEEEEEECSS---CCHHHHHHHHHHHTTS-SEEEEEECCCGG
T ss_pred CeEEEEcCCCc---ccHHHHHHHHHHHHhC-CEEEEEeccCcc
Confidence 34555 6674 9999999999999998 588888877753
No 46
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.26 E-value=0.045 Score=43.63 Aligned_cols=61 Identities=20% Similarity=0.114 Sum_probs=41.6
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
++|+..=|++|+|.||..++++|+....+.+.|-+... ..| .--.|.+.|++..+.+++.+
T Consensus 164 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~p~~g---~~k---~~di~~~~R~~~~~~~~~~~ 224 (546)
T 2gks_A 164 DKIVAFQTRNPMHRVHEELTKRAMEKVGGGLLLHPVVG---LTK---PGDVDVYTRMRIYKVLYEKY 224 (546)
T ss_dssp SCEEEECCSSCCCHHHHHHHHHHHHHHTSEEEECCBCS---BCC---TTSCCHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHhcCCcEEEEeCcC---CCC---CCCCCHHHHHHHHHHHHHhc
Confidence 57888899999999999999999974224454433322 111 12357788887777777654
No 47
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.00 E-value=0.043 Score=44.07 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=39.0
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
++|+..=|++|+|.||..++++|++...+.+.|-+... ..| .--.|.+.|++..+.+++.+
T Consensus 191 ~~v~afqtrnP~Hr~H~~l~~~a~~~~~~~llv~pl~g---~~k---~~di~~~~R~~~~~~~~~~~ 251 (573)
T 1m8p_A 191 SRVVAFQTRNPMHRAHRELTVRAARSRQANVLIHPVVG---LTK---PGDIDHFTRVRAYQALLPRY 251 (573)
T ss_dssp CSEEEECCSSCCCHHHHHHHHHHHHHTTCEEEECCBCC---CCC---TTCHHHHHHHHHHHHHGGGS
T ss_pred CeEEEEeeCCCcchhhHHHHHHHHHhcCCcEEEEeCCC---CCC---CCCCCHHHHHHHHHHHHHhC
Confidence 56788889999999999999999977324444433222 111 11245666666666666655
No 48
>3n8h_A Pantothenate synthetase; alpha-beta sandwich, ligase, structural genomics, structural of infectious diseases; HET: MSE AMP GOL; 2.00A {Francisella tularensis subsp} PDB: 3qtt_A*
Probab=94.28 E-value=0.076 Score=39.21 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=30.1
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~ 60 (103)
+++-+.-|--.+|-||+.|+++|.+.+ +.++|.+--||
T Consensus 24 ~~ig~VPTMGaLH~GHlsLv~~Ar~~~-d~vVVSIFVNP 61 (264)
T 3n8h_A 24 QKIGFVPTMGALHNGHISLIKKAKSEN-DVVIVSIFVNP 61 (264)
T ss_dssp SCEEEEEECSSCCHHHHHHHHHHHHHC-SEEEEEECCCG
T ss_pred CcEEEECCCcchhHHHHHHHHHHHHhC-CEEEEEEccCc
Confidence 345555677799999999999999998 57777777665
No 49
>3mxt_A Pantothenate synthetase; alpha-beta-alpha, structural genomics, center for structural of infectious diseases, csgid, ligase; HET: MSE; 1.85A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3uy4_A*
Probab=93.19 E-value=0.27 Score=36.63 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=26.1
Q ss_pred EEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCC
Q 034114 25 VLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGP 60 (103)
Q Consensus 25 ~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~ 60 (103)
-+.-|--.+|.||+.|+++|.+ + +.++|.+--||
T Consensus 28 g~VPTMGaLH~GHlsLv~~Ar~-~-d~VVVSIFVNP 61 (285)
T 3mxt_A 28 GYVPTMGFLHDGHLSLVKHAKT-Q-DKVIVSIFVNP 61 (285)
T ss_dssp EEEEECSSCCHHHHHHHHHHTT-S-SEEEEEECCCG
T ss_pred EEEcCCCcccHHHHHHHHHHHh-C-CEEEEEeccCc
Confidence 3333444699999999999999 7 58888877765
No 50
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=91.12 E-value=0.61 Score=37.27 Aligned_cols=61 Identities=11% Similarity=0.041 Sum_probs=39.8
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhc
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVL 88 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~ 88 (103)
++|+..=|-+|+|.||..+++++.....+.+.+ .+++-..+ .--.|.+-|++..+.+++.+
T Consensus 164 ~~v~afqtrnp~Hrah~~~~~~~~~~~~~~lll----~pl~g~~k--~~d~~~~~r~~~~~~~~~~~ 224 (552)
T 3cr8_A 164 RRIIAWQARQPMHRAQYEFCLKSAIENEANLLL----HPQVGGDI--TEAPAYFGLVRSFLAIRDRF 224 (552)
T ss_dssp CSEEEECCSSCCCHHHHHHHHHHHHHTTCEEEE----CCBCCCCT--TTCTTHHHHHHHHHHHGGGS
T ss_pred CceEEEecCCCCchHHHHHHHHHHHhcCCeEEE----EeccCCCC--CCCCCHHHHHHHHHHHHHhC
Confidence 467777999999999999999999544343333 23321111 22356777777777776666
No 51
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=89.78 E-value=1.3 Score=36.03 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=37.8
Q ss_pred cEEEEecccCCCCHHHHHHHHHHHHH-hcC-----cEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHH
Q 034114 22 GAVVLGGTFDRLHDGHRLFLKASAEL-ARD-----RIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIK 86 (103)
Q Consensus 22 ~~v~~~GtFD~lH~GH~~ll~~a~~~-~~~-----~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~ 86 (103)
++|+..=|-+|+|.||..|.+.|.+. ++. .+.+-+.-. ..| .--.|.+.|++..+.+++
T Consensus 413 ~~VvafqtrNP~HraHe~l~~~a~~~~~d~g~~~~~lll~pl~G---~tk---~~di~~~~r~~~~~~~~~ 477 (630)
T 1x6v_B 413 DAVSAFQLRNPVHNGHALLMQDTHKQLLERGYRRPVLLLHPLGG---WTK---DDDVPLMWRMKQHAAVLE 477 (630)
T ss_dssp SEEEEEEESSCCCHHHHHHHHHHHHHHHHHTCSSEEEEEEEBCS---CCC---TTSCCHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCcEEEEeCcC---CCC---CCCCCHHHHHHHHHHHHH
Confidence 57888889999999999999999874 321 233333322 111 123566777766666665
No 52
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima}
Probab=47.77 E-value=50 Score=23.63 Aligned_cols=61 Identities=26% Similarity=0.244 Sum_probs=41.2
Q ss_pred EEEecccCCCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 034114 24 VVLGGTFDRLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVDERMRNVEAYIKVLGKWMHVLF 96 (103)
Q Consensus 24 v~~~GtFD~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~~R~~~~~~fi~~~~~~~~V~G 96 (103)
|++.| .-|.|=.++++.|.+...+.+..++-.--+. .+-++|++...+++++++|+..+.+
T Consensus 175 vvitG---CsH~GI~Niv~~a~~~~g~~i~~viGGfHL~---------~~~~~~l~~tl~~l~~~~~~~i~~~ 235 (267)
T 3h3e_A 175 VVITG---CSHRGIDNILLDIAETFNERIKMVVGGFHLL---------KSSDDEIEKIVKAFNELGVETVVPC 235 (267)
T ss_dssp EEEES---CCTTCHHHHHHHHHTTCSSCEEEEEEECCCT---------TSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEeC---CCCcCHHHHHHHHHHHhCCCceEEEeccccC---------CCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 44445 3699999999999998644444444443222 1125788888888888888877654
No 53
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=46.84 E-value=27 Score=26.13 Aligned_cols=26 Identities=31% Similarity=0.429 Sum_probs=15.7
Q ss_pred CCHHHHH-HHHHHHHHhcC-cEEEEEec
Q 034114 33 LHDGHRL-FLKASAELARD-RIVVGVCD 58 (103)
Q Consensus 33 lH~GH~~-ll~~a~~~~~~-~viV~vt~ 58 (103)
+|+||.. .+.....+-+. .+++.+..
T Consensus 35 lHLGn~~g~l~~~~~lQ~~~~~~~~IaD 62 (351)
T 1yi8_B 35 LHLGHLAGSLQNRVRLQDEAELFVLLAD 62 (351)
T ss_dssp CBHHHHHHTHHHHHHHTSSSEEEEEECH
T ss_pred ccHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 9999977 66555444322 45555544
No 54
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=33.11 E-value=87 Score=22.27 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=36.7
Q ss_pred ecccC-CCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCCCCHH---HHHHHHHHHHHhcCCCEEEEee
Q 034114 27 GGTFD-RLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELIQPVD---ERMRNVEAYIKVLGKWMHVLFF 97 (103)
Q Consensus 27 ~GtFD-~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i~~f~---~R~~~~~~fi~~~~~~~~V~G~ 97 (103)
.|.|| |+ |=+..++...+.-...-++-+..+...+.- ..+.+ ++....-+++++.+++.+|+.=
T Consensus 10 IgvfDSGv--GGLtv~~~i~~~lp~~~~iy~~D~a~~PYG-----~~~~~~i~~~~~~~~~~L~~~g~~~iVIAC 77 (268)
T 3out_A 10 IGVFDSGI--GGLTIVKNLMSILPNEDIIYFGDIARIPYG-----TKSRATIQKFAAQTAKFLIDQEVKAIIIAC 77 (268)
T ss_dssp EEEEESSS--TTHHHHHHHHHHCTTCCEEEEECTTTCCCT-----TSCHHHHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred EEEEECCC--ChHHHHHHHHHHCCCCcEEEecCCCCCCCC-----CCCHHHHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 47788 54 778888888877533333334333222221 12333 3444556777778888888753
No 55
>2l8k_A NSP7, non-structural protein 7; viral protein; NMR {Equine arteritis virus}
Probab=32.01 E-value=20 Score=23.31 Aligned_cols=31 Identities=23% Similarity=0.099 Sum_probs=20.7
Q ss_pred cccccccccccCCCCCCCccEEEEecccCCCCHH
Q 034114 3 MAILDESVVNSNISPDNSYGAVVLGGTFDRLHDG 36 (103)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~v~~~GtFD~lH~G 36 (103)
||++++=+ ..+.+..-.+|+..|.||.+-.|
T Consensus 65 LAkL~~Fa---~~~~~~~GD~VV~LG~~d~~~vg 95 (123)
T 2l8k_A 65 MAKLADFA---VEQEVTAGDRVVVIDGLDRMAHF 95 (123)
T ss_dssp HHHHTTTT---CCCCCCTTSEEEESSCCSSCEEE
T ss_pred HHHHHHHh---hccCCCCCCEEEEecceeEEEec
Confidence 67777655 44555667788888889944333
No 56
>2qlc_A DNA repair protein RADC homolog; MCSG, structural genomics, PSI-2, structure initiative; HET: DNA; 2.30A {Chlorobium tepidum tls}
Probab=31.90 E-value=84 Score=20.01 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=40.4
Q ss_pred EEEEecccC--CCCHHHHHHHHHHHHHhcCcEEEEEecCCCCCcccccCCC---CCHHHHHHHHHHHHH-hcCCCEEEEe
Q 034114 23 AVVLGGTFD--RLHDGHRLFLKASAELARDRIVVGVCDGPMLTNKQFAELI---QPVDERMRNVEAYIK-VLGKWMHVLF 96 (103)
Q Consensus 23 ~v~~~GtFD--~lH~GH~~ll~~a~~~~~~~viV~vt~d~~l~~k~~~~~i---~~f~~R~~~~~~fi~-~~~~~~~V~G 96 (103)
..++.||-| .+|+ +.++++|..... ..+++..+- +....+|- ..+++|+..+.+.+. ++ -|.+|+|
T Consensus 42 ~~l~~Gt~~~~~v~p--Rei~~~Al~~~A--~~vIl~HNH---PSG~~~PS~~D~~~T~~l~~a~~ll~I~l-lDHiIig 113 (126)
T 2qlc_A 42 ETITIGTLTASLIHP--REIFKAAIRESA--HSIILVHNH---PSGDVQPSNADKQVTSILKKAGDLLQIEL-LDHVIVG 113 (126)
T ss_dssp EEEEESSCCGGGCCH--HHHHHHHHHTTC--SEEEEEEEC---SSSCCSCCHHHHHHHHHHHHHHHHHTCEE-EEEEEEC
T ss_pred EEecCCCCCcEeecH--HHHHHHHHHcCC--cEEEEEecC---CCCCCCCCHHHHHHHHHHHHHHHHCCCeE-eeeEEEe
Confidence 367788887 4566 788899988752 333333331 11111110 124455555666664 23 6888999
Q ss_pred eCcee
Q 034114 97 FGSYF 101 (103)
Q Consensus 97 ~d~~f 101 (103)
.+..|
T Consensus 114 ~~~~~ 118 (126)
T 2qlc_A 114 NNDWF 118 (126)
T ss_dssp SSCEE
T ss_pred CCcEE
Confidence 87655
No 57
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=31.82 E-value=65 Score=19.52 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeeC
Q 034114 73 PVDERMRNVEAYIKVLGKWMHVLFFG 98 (103)
Q Consensus 73 ~f~~R~~~~~~fi~~~~~~~~V~G~d 98 (103)
+++...+.+.+++++.+++.+|+|.-
T Consensus 35 ~~~~~~~~l~~li~e~~v~~iVvGlP 60 (98)
T 1iv0_A 35 TLEEDVEALLDFVRREGLGKLVVGLP 60 (98)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CcHHHHHHHHHHHHHcCCCEEEEeec
Confidence 66777788999999999999999964
No 58
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=30.96 E-value=78 Score=23.08 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHhcC--cEEEEEecC
Q 034114 32 RLHDGHRLFLKASAELARD--RIVVGVCDG 59 (103)
Q Consensus 32 ~lH~GH~~ll~~a~~~~~~--~viV~vt~d 59 (103)
.+|+||.--+...+.+-+. .+++.+...
T Consensus 40 ~lHlGhl~~l~~~~~lQ~~g~~~~~~i~D~ 69 (314)
T 2zp1_A 40 KIHLGHYLQIKKMIDLQNAGFDIIILLADL 69 (314)
T ss_dssp SCBHHHHHHHHHHHHHHHTTEEEEEEECHH
T ss_pred CcchhhHHHHHHHHHHHHCCCCEEEEEecc
Confidence 4999997777777665321 455666543
No 59
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=30.73 E-value=58 Score=24.38 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=17.5
Q ss_pred CCCHHHHHHHHHHHHHhc--CcEEEEEec
Q 034114 32 RLHDGHRLFLKASAELAR--DRIVVGVCD 58 (103)
Q Consensus 32 ~lH~GH~~ll~~a~~~~~--~~viV~vt~ 58 (103)
.+|+||+--+...+.+-+ -.+++.+..
T Consensus 47 ~lHlG~l~~l~~~~~lQ~~G~~~~~~iaD 75 (364)
T 2cya_A 47 VAHIGWLVWMYKVKDLVEAGVDFSVLEAT 75 (364)
T ss_dssp SCBTHHHHHHHHHHHHHHTTCEEEEEECH
T ss_pred CccHhHHHHHHHHHHHHHCCCCEEEEEeC
Confidence 399999777777766532 245555554
No 60
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=29.66 E-value=61 Score=20.57 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEE
Q 034114 73 PVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 73 ~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
+..+|...+.++|++.+||++++
T Consensus 18 ~~~~r~~~i~~~i~~~~pDIi~L 40 (250)
T 4f1h_A 18 NLADRARGLCSYLALYTPDVVFL 40 (250)
T ss_dssp THHHHHHHHHHHHHHHCCSEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEE
Confidence 45788888999999999998875
No 61
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=29.46 E-value=60 Score=21.12 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.8
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEE
Q 034114 73 PVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 73 ~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
+..+|...+.++|++.+||++++
T Consensus 28 ~~~~r~~~i~~~i~~~~pDIi~L 50 (256)
T 4fva_A 28 SLLTRMKAVAHIVKNVNPDILFL 50 (256)
T ss_dssp THHHHHHHHHHHHHHHCCSEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEE
Confidence 46788889999999999998875
No 62
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=28.89 E-value=92 Score=19.59 Aligned_cols=35 Identities=11% Similarity=-0.097 Sum_probs=25.3
Q ss_pred ccCCCCCCCccEEEEecccCCCCHHHHHHHHHHHHH
Q 034114 12 NSNISPDNSYGAVVLGGTFDRLHDGHRLFLKASAEL 47 (103)
Q Consensus 12 ~~~~~~~~~~~~v~~~GtFD~lH~GH~~ll~~a~~~ 47 (103)
......+....++++.|.++. +.|...+++.+.++
T Consensus 14 ~~~~~~~~~~~~i~~~G~~~~-~Kg~~~li~a~~~l 48 (177)
T 2f9f_A 14 TSKFKFKCYGDFWLSVNRIYP-EKRIELQLEVFKKL 48 (177)
T ss_dssp CTTCCCCCCCSCEEEECCSSG-GGTHHHHHHHHHHC
T ss_pred ccccccCCCCCEEEEEecccc-ccCHHHHHHHHHhC
Confidence 333344455667899999986 68988888877766
No 63
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=27.83 E-value=67 Score=20.82 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=19.6
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEE
Q 034114 73 PVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 73 ~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
...+|...+.++|++.+||++++
T Consensus 24 ~~~~r~~~i~~~i~~~~pDIi~L 46 (256)
T 4gz1_A 24 NLPERARGVCSCLALYSPDVVFL 46 (256)
T ss_dssp THHHHHHHHHHHHHHHCCSEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEE
Confidence 46788889999999999998875
No 64
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=23.04 E-value=53 Score=25.50 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=12.9
Q ss_pred cEEEEeccc---CCCCHHHHH
Q 034114 22 GAVVLGGTF---DRLHDGHRL 39 (103)
Q Consensus 22 ~~v~~~GtF---D~lH~GH~~ 39 (103)
+..+++.+. +++|+||..
T Consensus 26 ~~~i~~p~pypng~lHiGH~r 46 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAY 46 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhH
Confidence 445566654 799999984
No 65
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=22.72 E-value=31 Score=26.60 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=13.1
Q ss_pred cEEEEecc--cCCCCHHHHH
Q 034114 22 GAVVLGGT--FDRLHDGHRL 39 (103)
Q Consensus 22 ~~v~~~Gt--FD~lH~GH~~ 39 (103)
..+++.|- .+.+|+||..
T Consensus 23 v~~yv~gPt~y~~~HiGHar 42 (461)
T 1li5_A 23 VGMYVCGITVYDLCHIGHGR 42 (461)
T ss_dssp EEEEECCCBSSSCCBHHHHH
T ss_pred eeEEEcCCcCCCCCcccccH
Confidence 34555563 4999999986
No 66
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=22.11 E-value=91 Score=23.53 Aligned_cols=29 Identities=17% Similarity=0.093 Sum_probs=17.0
Q ss_pred cCC---CCHHHHHHHHHHHHHh--cCcEEEEEec
Q 034114 30 FDR---LHDGHRLFLKASAELA--RDRIVVGVCD 58 (103)
Q Consensus 30 FD~---lH~GH~~ll~~a~~~~--~~~viV~vt~ 58 (103)
||| +|+||..-+-...... .-.+++.+..
T Consensus 46 ~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D 79 (394)
T 2dlc_X 46 TAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLAD 79 (394)
T ss_dssp ECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECH
T ss_pred eCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 555 9999987554444332 1255666654
No 67
>3cex_A Uncharacterized protein; structural genomics, EF_3021, PSI-2, structure initiative, midwest center for structural genomic unknown function; 2.00A {Enterococcus faecalis}
Probab=21.83 E-value=34 Score=22.20 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHH
Q 034114 33 LHDGHRLFLKASA 45 (103)
Q Consensus 33 lH~GH~~ll~~a~ 45 (103)
=|.||..+|++..
T Consensus 157 ~H~Gqa~~lRe~~ 169 (172)
T 3cex_A 157 MHSGQAVYTRRLV 169 (172)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHh
Confidence 4889999988764
No 68
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=20.68 E-value=67 Score=24.21 Aligned_cols=18 Identities=28% Similarity=0.386 Sum_probs=13.4
Q ss_pred cEEEEeccc--CCCCHHHHH
Q 034114 22 GAVVLGGTF--DRLHDGHRL 39 (103)
Q Consensus 22 ~~v~~~GtF--D~lH~GH~~ 39 (103)
..+++.|-+ +++|+||..
T Consensus 40 v~~y~~gPt~yg~~HiGHar 59 (414)
T 3c8z_A 40 ATMYVCGITPYDATHLGHAA 59 (414)
T ss_dssp EEEEECCCCTTSCCBHHHHH
T ss_pred ceEEeCCCcCCCCcCccccH
Confidence 345666644 999999986
No 69
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=20.40 E-value=1.1e+02 Score=20.23 Aligned_cols=24 Identities=13% Similarity=-0.063 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEE
Q 034114 72 QPVDERMRNVEAYIKVLGKWMHVL 95 (103)
Q Consensus 72 ~~f~~R~~~~~~fi~~~~~~~~V~ 95 (103)
.+++.|...+.+.|+..+||++.+
T Consensus 18 ~~w~~r~~~i~~~i~~~~~DIv~L 41 (257)
T 3l1w_A 18 WQWSFRKEAVCQLINFHDWSLCCI 41 (257)
T ss_dssp GSHHHHHHHHHHHHHHHCCSEEEE
T ss_pred cChHHHHHHHHHHHHHcCCCEEEE
Confidence 467789889999999999999875
Done!