BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034116
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P53305|RT27_YEAST Mitochondral 37S ribosomal protein S27 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RSM27 PE=1
SV=1
Length = 110
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 19 LTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWY--PYDIKK--------DDPLVM 68
+ E AKIF NP+G R+ KIL ++L G VA +Y P DI K D +
Sbjct: 11 VAELSAKIFDQNFNPSGIRTGSKILNERLKGPSVASYYGNP-DILKFRHLKTLYPDIEFV 69
Query: 69 ARQQQERLSKLEMLKRRGKGPPKK 92
++Q RLS +E KRRGKG PKK
Sbjct: 70 DLEEQYRLSMVEAKKRRGKGAPKK 93
>sp|Q01146|VG16_BPP22 DNA transfer protein gp16 OS=Enterobacteria phage P22 GN=16 PE=1
SV=1
Length = 609
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 28 GHVLNPAGQRSPHKILRKKLIG---DKVAGWYPYDIKKD-DPLVMARQQQERLSKLEMLK 83
G +L G+R+ +R KL+G D+V G+ P DI K V R+ + E++
Sbjct: 233 GALLGTGGKRAEQYAIRSKLLGDYFDRVGGYNPDDIVKSMTSTVGGRKNAAGAVRDEIVN 292
Query: 84 RRGKGP 89
R G P
Sbjct: 293 RMGSAP 298
>sp|A1B3P3|SYM_PARDP Methionine--tRNA ligase OS=Paracoccus denitrificans (strain Pd
1222) GN=metG PE=3 SV=1
Length = 572
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 2 ATGGRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYDIK 61
A G + +N + T L E R+ I G N + + H LR++ + D++A W D K
Sbjct: 151 ARGDQCENCTKQLDPTDLIEPRSAISGST-NLEVRATKHLYLRQRSLKDRIAAW--IDSK 207
Query: 62 KDDPLVMARQQQERLSKLEMLKRRG 86
D P++ ++ L+ + L+ RG
Sbjct: 208 TDWPILTTSIARKWLNDGDGLQDRG 232
>sp|P82926|RT33_BOVIN 28S ribosomal protein S33, mitochondrial OS=Bos taurus GN=MRPS33
PE=1 SV=2
Length = 106
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 19 LTEARAKIFGHVLNPAGQRSPHKILRKKLIGDK-------VAGWYPYD--------IKKD 63
++ A++F V P +S + KL ++ WYP I +
Sbjct: 11 MSRLSARLFSEVARPTDSKSMKVV---KLFSEQPLAKRKETYDWYPNHNTYFALMGILRS 67
Query: 64 DPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKRAAKR 101
L Q + +L + K RGK P+KG+GKRAAK+
Sbjct: 68 VGLYRDEHQDFKDEQLRLKKLRGKVKPRKGEGKRAAKK 105
>sp|Q9D2R8|RT33_MOUSE 28S ribosomal protein S33, mitochondrial OS=Mus musculus GN=Mrps33
PE=2 SV=1
Length = 106
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 5/32 (15%)
Query: 70 RQQQERLSKLEMLKRRGKGPPKKGQGKRAAKR 101
+ +Q RL KL RGKG P+KG+GKRA K+
Sbjct: 79 KDEQRRLKKL-----RGKGKPRKGEGKRATKK 105
>sp|Q8TZY2|SMC_PYRFU Chromosome partition protein Smc OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=smc PE=1 SV=2
Length = 1177
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 43 LRKKLIGDKVAGWYPYDIKKDDPLVMARQQQERLSKLEMLKRRGKGPPKKGQGKR 97
L ++L+ D ++G YD KK+ L +Q +E L+++++L + K K + +R
Sbjct: 157 LERRLLIDDISGIAEYDSKKEKALEELKQAEENLARVDLLIKEVKKQLDKLEKER 211
>sp|Q8TYP4|HDRA1_METKA CoB--CoM heterodisulfide reductase iron-sulfur subunit A 1
OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM
9639 / NBRC 100938) GN=hdrA1 PE=3 SV=3
Length = 669
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 5 GRLKNILATVVTTGLTEARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAG 54
G+ N++ T+ + GHV+ P+ + PH+I+ +G + G
Sbjct: 349 GKYDNVITTLELERMINPAGPTEGHVIRPSDGKEPHRIVFIHCVGSRCPG 398
>sp|Q8ZU97|ASSY_PYRAE Argininosuccinate synthase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=argG
PE=3 SV=2
Length = 397
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 21 EARAKIFGHVLNPAGQRSPHKILRKKLIGDKVAGWYPYD 59
E R K++ L G+ SP+ K+L D AGWYP D
Sbjct: 338 EVRVKLYKGSLWVVGRESPYGGYSKEL-ADYSAGWYPSD 375
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,830,324
Number of Sequences: 539616
Number of extensions: 1499946
Number of successful extensions: 3538
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3529
Number of HSP's gapped (non-prelim): 15
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)