BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034117
(103 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449521910|ref|XP_004167972.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 112
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/104 (75%), Positives = 88/104 (84%), Gaps = 2/104 (1%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MKG+KGKG +RVS+EALKP +DRKVGKRKA K D G KR K++ KAKKDPNKPKRPP
Sbjct: 1 MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVV-KADKGIKRPTKKDLKAKKDPNKPKRPP 59
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVSI 103
SAFFVFLEEFRK +K+ENPNV AVSAVGKA G KWKS+S AVSI
Sbjct: 60 SAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHAVSI 103
>gi|449461783|ref|XP_004148621.1| PREDICTED: high mobility group B protein 1-like [Cucumis sativus]
Length = 169
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 76/101 (75%), Positives = 85/101 (84%), Gaps = 2/101 (1%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MKG+KGKG +RVS+EALKP +DRKVGKRKA K D G KR K++ KAKKDPNKPKRPP
Sbjct: 1 MKGSKGKGTSRVSKEALKPVDDRKVGKRKAVV-KADKGIKRPTKKDLKAKKDPNKPKRPP 59
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
SAFFVFLEEFRK +K+ENPNV AVSAVGKA G KWKS+S A
Sbjct: 60 SAFFVFLEEFRKEYKRENPNVKAVSAVGKAGGEKWKSLSHA 100
>gi|312281849|dbj|BAJ33790.1| unnamed protein product [Thellungiella halophila]
Length = 185
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/101 (70%), Positives = 82/101 (81%), Gaps = 4/101 (3%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MK AKGK + ++E LKP +DRKVGKRKA AK +KR+ ++EK+AKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTKETLKPVDDRKVGKRKAPAAK---ATKRETRKEKRAKKDPNKPKRAP 57
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
SAFFVFLE+FR+TFKKENPNV AVSAVGKA G KWKSMS A
Sbjct: 58 SAFFVFLEDFRQTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>gi|297819892|ref|XP_002877829.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
gi|297323667|gb|EFH54088.1| hypothetical protein ARALYDRAFT_323737 [Arabidopsis lyrata subsp.
lyrata]
Length = 185
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 81/101 (80%), Gaps = 4/101 (3%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MK AKGK + ++EALKP +DRKVGKRKA K +KR+ ++EKKAKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEK---ATKRETRKEKKAKKDPNKPKRAP 57
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
SAFFVFLE+FR TFKKENPNV AVSAVGKA G KWKSMS A
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>gi|42572635|ref|NP_974413.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|222423104|dbj|BAH19531.1| AT3G51880 [Arabidopsis thaliana]
gi|332645335|gb|AEE78856.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 185
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 81/101 (80%), Gaps = 4/101 (3%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MK AKGK + ++EALKP +DRKVGKRKA K +KR+ ++EKKAKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEK---PTKRETRKEKKAKKDPNKPKRAP 57
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
SAFFVFLE+FR TFKKENPNV AVSAVGKA G KWKSMS A
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>gi|255574381|ref|XP_002528104.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223532493|gb|EEF34283.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 171
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/101 (77%), Positives = 88/101 (87%), Gaps = 2/101 (1%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MK +KG GAA+ S++ALKP +DRKVGKRKAA A +D SK + KREKKAKKDPNKPKRPP
Sbjct: 1 MKNSKGTGAAKASKDALKPADDRKVGKRKAAAA-VDRSSKLKAKREKKAKKDPNKPKRPP 59
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
SAFFVFLEEFRKTFKKENP+VT+V+AVGKA G KWKSMS A
Sbjct: 60 SAFFVFLEEFRKTFKKENPSVTSVAAVGKAGGAKWKSMSSA 100
>gi|15231065|ref|NP_190756.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|145332807|ref|NP_001078269.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|75274976|sp|O49595.1|HMGB1_ARATH RecName: Full=High mobility group B protein 1; AltName: Full=High
mobility group protein A; Short=AtHMGalpha; Short=HMG
alpha; AltName: Full=Nucleosome/chromatin assembly
factor group D 01; Short=Nucleosome/chromatin assembly
factor group D 1
gi|2832357|emb|CAA74400.1| HMG protein [Arabidopsis thaliana]
gi|3068715|gb|AAC14415.1| unknown [Arabidopsis thaliana]
gi|15912191|gb|AAL08229.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|21360557|gb|AAM47475.1| At3g51880/ORF13 [Arabidopsis thaliana]
gi|332645334|gb|AEE78855.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645336|gb|AEE78857.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 178
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 81/101 (80%), Gaps = 4/101 (3%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MK AKGK + ++EALKP +DRKVGKRKA K +KR+ ++EKKAKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEK---PTKRETRKEKKAKKDPNKPKRAP 57
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
SAFFVFLE+FR TFKKENPNV AVSAVGKA G KWKSMS A
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>gi|334185909|ref|NP_001190062.1| high mobility group protein B1 [Arabidopsis thaliana]
gi|332645337|gb|AEE78858.1| high mobility group protein B1 [Arabidopsis thaliana]
Length = 161
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/101 (71%), Positives = 81/101 (80%), Gaps = 4/101 (3%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MK AKGK + ++EALKP +DRKVGKRKA K +KR+ ++EKKAKKDPNKPKR P
Sbjct: 1 MKTAKGKDKVKTTKEALKPVDDRKVGKRKAPAEK---PTKRETRKEKKAKKDPNKPKRAP 57
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
SAFFVFLE+FR TFKKENPNV AVSAVGKA G KWKSMS A
Sbjct: 58 SAFFVFLEDFRVTFKKENPNVKAVSAVGKAGGQKWKSMSQA 98
>gi|224112525|ref|XP_002316220.1| high mobility group family [Populus trichocarpa]
gi|222865260|gb|EEF02391.1| high mobility group family [Populus trichocarpa]
Length = 176
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/102 (68%), Positives = 80/102 (78%), Gaps = 3/102 (2%)
Query: 1 MKGAKGKGAARVSQ-EALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
MK AKGKG AR + E L P DRK+GKRKAA K + SK++ K+EK KKDPNKPKRP
Sbjct: 1 MKIAKGKGTARTEKKEVLLPVEDRKIGKRKAAL-KANESSKKRVKKEKITKKDPNKPKRP 59
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
PSAFFVFLEEFRK +K+E+PNV AVSAVGKA G KWKS+S A
Sbjct: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSAA 101
>gi|224098541|ref|XP_002311212.1| high mobility group family [Populus trichocarpa]
gi|222851032|gb|EEE88579.1| high mobility group family [Populus trichocarpa]
Length = 179
Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 78/102 (76%), Gaps = 3/102 (2%)
Query: 1 MKGAKGKGAARVSQE--ALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
MK AKGKGAAR ++ +L DRK+GKRKAA +S KR K EK KKDP+KPKRP
Sbjct: 1 MKTAKGKGAARTEKKEVSLPVEDRKIGKRKAALKATESSKKRAAK-EKITKKDPDKPKRP 59
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
PS+FFVFLEEFRK +K+E+PN+ AVSAVGKA G KWKSMS A
Sbjct: 60 PSSFFVFLEEFRKIYKQEHPNMKAVSAVGKAGGEKWKSMSAA 101
>gi|118484946|gb|ABK94338.1| unknown [Populus trichocarpa]
Length = 171
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/102 (65%), Positives = 78/102 (76%), Gaps = 3/102 (2%)
Query: 1 MKGAKGKGAARVSQE--ALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
MK AKGKGAAR ++ +L DRK+GKRKAA +S KR K EK KKDP+KPKRP
Sbjct: 1 MKTAKGKGAARTEKKEVSLPVEDRKIGKRKAALKATESSKKRAAK-EKITKKDPDKPKRP 59
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
PS+FFVFLEEFRK +K+E+PN+ AVSAVGKA G KWKSMS A
Sbjct: 60 PSSFFVFLEEFRKIYKQEHPNMKAVSAVGKAGGEKWKSMSAA 101
>gi|407971018|ref|NP_001238631.1| uncharacterized protein LOC100499704 [Glycine max]
gi|255625939|gb|ACU13314.1| unknown [Glycine max]
Length = 166
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/101 (74%), Positives = 81/101 (80%), Gaps = 4/101 (3%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MK AKGKGAAR S+E+LKP +DRKVGKRKA+ G K+EKKAKKDPNKPKRPP
Sbjct: 1 MKNAKGKGAARASKESLKPVDDRKVGKRKASGK---PGRSSAPKKEKKAKKDPNKPKRPP 57
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
SAFFVFLEEFRKTFK ENPNV AVS VGKA G KWKS+S A
Sbjct: 58 SAFFVFLEEFRKTFKAENPNVKAVSVVGKAGGEKWKSLSSA 98
>gi|351725417|ref|NP_001235556.1| uncharacterized protein LOC100305961 [Glycine max]
gi|255627113|gb|ACU13901.1| unknown [Glycine max]
Length = 169
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/101 (73%), Positives = 80/101 (79%), Gaps = 4/101 (3%)
Query: 1 MKGAKGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPP 59
MK AKGKGAAR S+E+LKP +DRKVGKRKA+ S R K+EKKAKKDPNKPKRPP
Sbjct: 1 MKTAKGKGAARPSKESLKPVDDRKVGKRKASGKPEKS---RAPKKEKKAKKDPNKPKRPP 57
Query: 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
SAF VFLEEFRKTFK ENP V AVS VGKA G KWKS+S A
Sbjct: 58 SAFLVFLEEFRKTFKAENPLVKAVSVVGKAGGEKWKSLSSA 98
>gi|388497798|gb|AFK36965.1| unknown [Medicago truncatula]
Length = 170
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/97 (74%), Positives = 82/97 (84%), Gaps = 4/97 (4%)
Query: 5 KGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFF 63
KGKG A+ S++ALKP +DRKVGKRKAA AK + K + +EKKAKKDPNKPKRPPSAFF
Sbjct: 3 KGKGTAKTSRDALKPVDDRKVGKRKAA-AKPEKVPKTK--KEKKAKKDPNKPKRPPSAFF 59
Query: 64 VFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
VFLE+FRKTFK ENPNV AVSAVGKA GGKWKS++ A
Sbjct: 60 VFLEDFRKTFKAENPNVKAVSAVGKAGGGKWKSLTKA 96
>gi|297736623|emb|CBI25494.3| unnamed protein product [Vitis vinifera]
Length = 128
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 83/105 (79%), Gaps = 3/105 (2%)
Query: 1 MKGAKGKGAARVSQ-EALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
MK KGK AAR + EALKP DR++GKRKAA K D +K+ K+EK AKKDPNKPKRP
Sbjct: 25 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAAL-KADKSTKKLAKKEKLAKKDPNKPKRP 83
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVSI 103
PSAFFVFLEEFRK +K+E+PNV AVSAVGKA G KWKS+S AV +
Sbjct: 84 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEAVLL 128
>gi|225448398|ref|XP_002269398.1| PREDICTED: high mobility group B protein 1 isoform 1 [Vitis
vinifera]
gi|147854340|emb|CAN83423.1| hypothetical protein VITISV_023376 [Vitis vinifera]
Length = 166
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 81/102 (79%), Gaps = 3/102 (2%)
Query: 1 MKGAKGKGAARVSQ-EALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
MK KGK AAR + EALKP DR++GKRKAA K D +K+ K+EK AKKDPNKPKRP
Sbjct: 1 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAAL-KADKSTKKLAKKEKLAKKDPNKPKRP 59
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
PSAFFVFLEEFRK +K+E+PNV AVSAVGKA G KWKS+S A
Sbjct: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEA 101
>gi|225448400|ref|XP_002270185.1| PREDICTED: high mobility group B protein 1 isoform 2 [Vitis
vinifera]
Length = 156
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 81/102 (79%), Gaps = 3/102 (2%)
Query: 1 MKGAKGKGAARVSQ-EALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
MK KGK AAR + EALKP DR++GKRKAA K D +K+ K+EK AKKDPNKPKRP
Sbjct: 1 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAAL-KADKSTKKLAKKEKLAKKDPNKPKRP 59
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
PSAFFVFLEEFRK +K+E+PNV AVSAVGKA G KWKS+S A
Sbjct: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSEA 101
>gi|357506009|ref|XP_003623293.1| HMG1/2-like protein [Medicago truncatula]
gi|355498308|gb|AES79511.1| HMG1/2-like protein [Medicago truncatula]
gi|388511215|gb|AFK43669.1| unknown [Medicago truncatula]
Length = 170
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/97 (73%), Positives = 81/97 (83%), Gaps = 4/97 (4%)
Query: 5 KGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFF 63
KGKG A+ S++ALKP +DRKVGKRKAA AK + K + +EKKAKKDPNKPKRPPSAFF
Sbjct: 3 KGKGTAKTSRDALKPVDDRKVGKRKAA-AKPEKVPKTK--KEKKAKKDPNKPKRPPSAFF 59
Query: 64 VFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
VFLE+FRKTFK ENPNV AVSAVGKA G KWKS++ A
Sbjct: 60 VFLEDFRKTFKAENPNVKAVSAVGKAGGEKWKSLTKA 96
>gi|359481661|ref|XP_002279947.2| PREDICTED: high mobility group B protein 1-like [Vitis vinifera]
gi|147815135|emb|CAN74566.1| hypothetical protein VITISV_023651 [Vitis vinifera]
gi|297740214|emb|CBI30396.3| unnamed protein product [Vitis vinifera]
Length = 168
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/102 (74%), Positives = 84/102 (82%), Gaps = 3/102 (2%)
Query: 1 MKGAKGKGAAR-VSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
MK AKGKGAAR ++EALKP DRK+GKRKAA K + SKR ++KKAKKDPNKPKRP
Sbjct: 1 MKAAKGKGAARRDTKEALKPAEDRKIGKRKAAV-KAEKSSKRATTKDKKAKKDPNKPKRP 59
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
PSAFFVFLEEFRK FKKENPNV AVSAVGKA G +WKS+S A
Sbjct: 60 PSAFFVFLEEFRKVFKKENPNVKAVSAVGKAGGERWKSLSEA 101
>gi|359386154|gb|AEV43366.1| group B HMG-box protein [Citrus sinensis]
Length = 165
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/102 (62%), Positives = 74/102 (72%), Gaps = 3/102 (2%)
Query: 1 MKGAKGKGAARVSQ-EALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
MK +GKGA + + E +KP DR GKRKA S +KR K K AKKDPNKPKRP
Sbjct: 1 MKVTRGKGAVKKDKNEVVKPVEDRAAGKRKAVLKASRSSNKRT-KNVKSAKKDPNKPKRP 59
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
PSAFFVFLEEFRK +K+E+PNV AVSAVGKA G KWKS++ A
Sbjct: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLTDA 101
>gi|116778852|gb|ABK21026.1| unknown [Picea sitchensis]
gi|116782574|gb|ABK22556.1| unknown [Picea sitchensis]
gi|116782678|gb|ABK22606.1| unknown [Picea sitchensis]
gi|116782786|gb|ABK22657.1| unknown [Picea sitchensis]
gi|116782898|gb|ABK22712.1| unknown [Picea sitchensis]
gi|116791878|gb|ABK26144.1| unknown [Picea sitchensis]
gi|148907501|gb|ABR16881.1| unknown [Picea sitchensis]
gi|224284566|gb|ACN40016.1| unknown [Picea sitchensis]
gi|224285212|gb|ACN40332.1| unknown [Picea sitchensis]
gi|224286734|gb|ACN41070.1| unknown [Picea sitchensis]
Length = 157
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKG K K A S K ++ +GKRK A AK S RQ K+ +KA KDPNKPKRP S
Sbjct: 1 MKGGKAKNEA--SSTLKKVEEKPIGKRKTA-AKESKVSSRQEKKGRKAAKDPNKPKRPAS 57
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
AFFVF+E+FRKT+K++NPNV +VS VGKA G KWKSMS A
Sbjct: 58 AFFVFMEDFRKTYKEKNPNVKSVSVVGKAGGDKWKSMSEA 97
>gi|255571919|ref|XP_002526902.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223533801|gb|EEF35533.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 190
Score = 97.4 bits (241), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 78/102 (76%), Gaps = 3/102 (2%)
Query: 1 MKGAKGKGAARVSQ-EALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
MK KGK A+ + E LKP DRK+GKR AA K + SK+ K++K AKKDPN+PKRP
Sbjct: 1 MKVGKGKETAKKDRKEVLKPVEDRKLGKRSAAL-KPNKNSKKVTKKDKPAKKDPNRPKRP 59
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
PSAFFVFLE+FRK +K+E+PNV AVSAVGKA G KWKSMS A
Sbjct: 60 PSAFFVFLEDFRKVYKQEHPNVKAVSAVGKAGGEKWKSMSNA 101
>gi|116790306|gb|ABK25570.1| unknown [Picea sitchensis]
gi|224286844|gb|ACN41125.1| unknown [Picea sitchensis]
gi|294461904|gb|ADE76508.1| unknown [Picea sitchensis]
Length = 151
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/100 (60%), Positives = 73/100 (73%), Gaps = 9/100 (9%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKG K K +++ D+K GKRK AT D+ KRQ K+EKKAKKDPNKPKRPPS
Sbjct: 1 MKGPKAKVEQKLA------GDKKTGKRKPAT---DTQVKRQIKKEKKAKKDPNKPKRPPS 51
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
AFFVFL+EFRK +K+ NPN +VSAVGKA G KW+++S A
Sbjct: 52 AFFVFLDEFRKEYKQANPNANSVSAVGKAGGEKWRALSDA 91
>gi|359486418|ref|XP_003633441.1| PREDICTED: high mobility group B protein 1 [Vitis vinifera]
Length = 151
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/87 (68%), Positives = 69/87 (79%), Gaps = 3/87 (3%)
Query: 1 MKGAKGKGAARVSQ-EALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
MK KGK AAR + EALKP DR++GKRKAA K D +K+ K+EK AKKDPNKPKRP
Sbjct: 1 MKVTKGKAAARKDKKEALKPVEDRRLGKRKAAL-KADKSTKKLAKKEKLAKKDPNKPKRP 59
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSA 85
PSAFFVFLEEFRK +K+E+PNV AVSA
Sbjct: 60 PSAFFVFLEEFRKVYKQEHPNVKAVSA 86
>gi|388522261|gb|AFK49192.1| unknown [Lotus japonicus]
Length = 173
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/97 (64%), Positives = 72/97 (74%), Gaps = 5/97 (5%)
Query: 5 KGKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFF 63
KGK A + S+E LKP +DRKVGKRKAA K D G+ + K+ KK KPKRPPSAFF
Sbjct: 3 KGKKAGKTSKEVLKPVDDRKVGKRKAAV-KPDKGTAGKAKKAKKDPN---KPKRPPSAFF 58
Query: 64 VFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
VFLE+FRKTFK ENPNV VSAVGKA G KWKS++ A
Sbjct: 59 VFLEDFRKTFKAENPNVKGVSAVGKAGGEKWKSLTKA 95
>gi|222642048|gb|EEE70180.1| hypothetical protein OsJ_30257 [Oryza sativa Japonica Group]
Length = 139
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%)
Query: 30 ATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKA 89
A ++ +G R R+ KA+KDPNKPKRPPSAFFVF+E+FRK +K+++PNV VS +GKA
Sbjct: 3 ARSRSSNGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKA 62
Query: 90 AGGKWKSMSPAV 101
G KWKSM+ A+
Sbjct: 63 GGDKWKSMTDAI 74
>gi|125564627|gb|EAZ10007.1| hypothetical protein OsI_32309 [Oryza sativa Indica Group]
Length = 139
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 56/72 (77%)
Query: 30 ATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKA 89
A ++ +G R R+ KA+KDPNKPKRPPSAFFVF+E+FRK +K+++PNV VS +GKA
Sbjct: 3 ARSRSSNGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKA 62
Query: 90 AGGKWKSMSPAV 101
G KWKSM+ A+
Sbjct: 63 GGDKWKSMTDAI 74
>gi|22135473|gb|AAM93217.1|AF527616_1 nucleasome/chromatin assembly factor D protein NFD101 [Zea mays]
gi|2196672|emb|CAA70045.1| HMGd1 [Zea mays]
gi|194698578|gb|ACF83373.1| unknown [Zea mays]
gi|414886616|tpg|DAA62630.1| TPA: HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 32 AKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
A+ +G R R+ KA+KDPNKPKRPPSAFFVF+EEFRK +K+++PNV VS +GKA G
Sbjct: 5 ARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGG 64
Query: 92 GKWKSMSPA 100
KWKS+S A
Sbjct: 65 DKWKSLSDA 73
>gi|414886617|tpg|DAA62631.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 119
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 32 AKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
A+ +G R R+ KA+KDPNKPKRPPSAFFVF+EEFRK +K+++PNV VS +GKA G
Sbjct: 5 ARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGG 64
Query: 92 GKWKSMSPA 100
KWKS+S A
Sbjct: 65 DKWKSLSDA 73
>gi|414886615|tpg|DAA62629.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 123
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 32 AKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
A+ +G R R+ KA+KDPNKPKRPPSAFFVF+EEFRK +K+++PNV VS +GKA G
Sbjct: 5 ARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGG 64
Query: 92 GKWKSMSPA 100
KWKS+S A
Sbjct: 65 DKWKSLSDA 73
>gi|162459697|ref|NP_001105649.1| HMG-like nucleosome/chromatin assembly factor D [Zea mays]
gi|17017392|gb|AAL33650.1|AF440221_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 126
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 32 AKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
A+ +G R R+ KA+KDPNKPKRPPSAFFVF+EEFRK +K+++PNV VS +GKA G
Sbjct: 5 ARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSLIGKAGG 64
Query: 92 GKWKSMSPA 100
KWKS+S A
Sbjct: 65 DKWKSLSDA 73
>gi|414886614|tpg|DAA62628.1| TPA: hypothetical protein ZEAMMB73_230922 [Zea mays]
Length = 118
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 54/69 (78%)
Query: 32 AKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
A+ +G R R+ KA+KDPNKPKRPPSAFFVF+EEFRK +K+++PNV VS +GKA G
Sbjct: 5 ARSTAGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGG 64
Query: 92 GKWKSMSPA 100
KWKS+S A
Sbjct: 65 DKWKSLSDA 73
>gi|2894109|emb|CAA05365.1| high mobility group protein [Solanum tuberosum]
Length = 141
Score = 90.9 bits (224), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 63/98 (64%), Gaps = 19/98 (19%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKGAK K A D K+G RK AT + K+ K A KDPNKPKRPPS
Sbjct: 1 MKGAKSKAKA----------DTKLGVRKKAT---------ESKKAKNAAKDPNKPKRPPS 41
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
AFFVF+EEFRKT+K+++PN +V+ VGKA G KWK +S
Sbjct: 42 AFFVFMEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLS 79
>gi|388497528|gb|AFK36830.1| unknown [Medicago truncatula]
Length = 155
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/100 (57%), Positives = 68/100 (68%), Gaps = 10/100 (10%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKGAK KG ++ + L V K+ AA K G ++ K K KDPNKPKRPPS
Sbjct: 1 MKGAKSKGESKKADAKLA-----VNKKGAAATK---GGRKPAKG--KEPKDPNKPKRPPS 50
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
AFFVF+E+FRK FKK+NP+ AVSAVGKAAG KWKS+S A
Sbjct: 51 AFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEA 90
>gi|115480551|ref|NP_001063869.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|50726318|dbj|BAD33893.1| putative HMGd1 [Oryza sativa Japonica Group]
gi|113632102|dbj|BAF25783.1| Os09g0551600 [Oryza sativa Japonica Group]
gi|213959176|gb|ACJ54922.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215694881|dbj|BAG90072.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 127
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 55/71 (77%)
Query: 30 ATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKA 89
A ++ +G R R+ KA+KDPNKPKRPPSAFFVF+E+FRK +K+++PNV VS +GKA
Sbjct: 3 ARSRSSNGDSRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKA 62
Query: 90 AGGKWKSMSPA 100
G KWKSM+ A
Sbjct: 63 GGDKWKSMTDA 73
>gi|388504718|gb|AFK40425.1| unknown [Lotus japonicus]
Length = 152
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 46/54 (85%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KA KDPNKPKRPPSAFFVF+E+FRK F KENP AVSAVGKAAG KWKSMS A
Sbjct: 36 KAAKDPNKPKRPPSAFFVFMEDFRKIFNKENPENKAVSAVGKAAGAKWKSMSEA 89
>gi|356508616|ref|XP_003523051.1| PREDICTED: HMG1/2-like protein-like [Glycine max]
Length = 152
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 47/54 (87%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KA KDPNKPKRPPSAFFVF+EEFRK F KE+P+ AVSAVGKAAG KWK+MS A
Sbjct: 36 KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPDNKAVSAVGKAAGAKWKTMSDA 89
>gi|388497036|gb|AFK36584.1| unknown [Medicago truncatula]
Length = 155
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 55/100 (55%), Positives = 65/100 (65%), Gaps = 10/100 (10%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKGAK KG ++ + L N +K A A +GK K DPNKPKRPPS
Sbjct: 1 MKGAKSKGESKKADAKLAVN------KKGAVATKGGRKPAKGKEPK----DPNKPKRPPS 50
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
AFFVF+E+FRK FKK+NP+ AVSAVGKAAG KWKS+S A
Sbjct: 51 AFFVFMEDFRKQFKKDNPDNKAVSAVGKAAGAKWKSLSEA 90
>gi|18419623|gb|AAL69379.1|AF462216_1 HMG-domain containing protein [Narcissus pseudonarcissus]
Length = 106
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 46/52 (88%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KA+KDPNKPKRPPSAFFVF+EEFRK FK++NPN VS VGKAAG KWKSMS
Sbjct: 38 KAEKDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 89
>gi|116781378|gb|ABK22074.1| unknown [Picea sitchensis]
gi|224284710|gb|ACN40086.1| unknown [Picea sitchensis]
Length = 154
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 52/63 (82%), Gaps = 2/63 (3%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+KRQ K KA KDPN+PKRPP+AFFV+LEEFRKTFK+++P+V V+AVGKA G KWK M
Sbjct: 33 NKRQAK--PKAVKDPNQPKRPPTAFFVYLEEFRKTFKQKHPDVKGVTAVGKACGDKWKEM 90
Query: 98 SPA 100
S A
Sbjct: 91 SEA 93
>gi|351725567|ref|NP_001236841.1| HMG1/2-like protein [Glycine max]
gi|123379|sp|P26585.1|HMGL_SOYBN RecName: Full=HMG1/2-like protein; AltName: Full=Protein SB11
gi|18645|emb|CAA41200.1| HMG-1 like protein gene [Glycine max]
Length = 152
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 46/54 (85%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KA KDPNKPKRPPSAFFVF+EEFRK F KE+P AVSAVGKAAG KWK+MS A
Sbjct: 36 KAAKDPNKPKRPPSAFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDA 89
>gi|414590133|tpg|DAA40704.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 140
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 42/77 (54%), Positives = 54/77 (70%)
Query: 24 VGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
VG + A+ G R R+ K +KDPNKPKRPP+AFFVF+EEFRK +K+++PNV V
Sbjct: 17 VGLEMKSRARSGGGDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQV 76
Query: 84 SAVGKAAGGKWKSMSPA 100
S +GKA G WKS+S A
Sbjct: 77 SVIGKAGGDMWKSLSDA 93
>gi|2832355|emb|CAA74403.1| HMG protein [Arabidopsis thaliana]
Length = 138
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 57/98 (58%), Gaps = 20/98 (20%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKG + K A + + LK RK GK K KKDPN+PKRPPS
Sbjct: 1 MKGGESKAGATSTDQRLKTRGRKAGK--------------------KTKKDPNQPKRPPS 40
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
AFFVFLE+FRK F NPN +V+ VGKAAG +WKSM+
Sbjct: 41 AFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKSMT 78
>gi|449455609|ref|XP_004145545.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449511984|ref|XP_004164108.1| PREDICTED: HMG1/2-like protein-like isoform 1 [Cucumis sativus]
gi|449511988|ref|XP_004164109.1| PREDICTED: HMG1/2-like protein-like isoform 2 [Cucumis sativus]
Length = 146
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/50 (82%), Positives = 43/50 (86%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRP SAFFVF+EEFRK F +ENPN AVSAVGKAAG KWKSMS A
Sbjct: 35 DPNKPKRPASAFFVFMEEFRKKFNEENPNNKAVSAVGKAAGQKWKSMSDA 84
>gi|295913700|gb|ADG58091.1| transcription factor [Lycoris longituba]
Length = 162
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 43/49 (87%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPNKPKRPPSAFFVF+EEFRK FK++NPN VS VGKAAG KWKSMS
Sbjct: 41 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 89
>gi|295913475|gb|ADG57987.1| transcription factor [Lycoris longituba]
Length = 162
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 43/49 (87%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPNKPKRPPSAFFVF+EEFRK FK++NPN VS VGKAAG KWKSMS
Sbjct: 41 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 89
>gi|295913526|gb|ADG58011.1| transcription factor [Lycoris longituba]
Length = 171
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 43/49 (87%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPNKPKRPPSAFFVF+EEFRK FK++NPN VS VGKAAG KWKSMS
Sbjct: 54 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 102
>gi|351725757|ref|NP_001235312.1| uncharacterized protein LOC100499992 [Glycine max]
gi|255628371|gb|ACU14530.1| unknown [Glycine max]
Length = 139
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 54/71 (76%), Gaps = 5/71 (7%)
Query: 35 DSGSKRQG-----KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKA 89
DS KR+G K+ +KA KDPNKPKRPPSAFFVF+ EFR+ FKKE+PN +V+ VGKA
Sbjct: 12 DSRLKRKGAGAGRKQSRKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKA 71
Query: 90 AGGKWKSMSPA 100
G KWKS+S A
Sbjct: 72 GGEKWKSLSDA 82
>gi|238013344|gb|ACR37707.1| unknown [Zea mays]
gi|414590135|tpg|DAA40706.1| TPA: HMG1/2-like protein [Zea mays]
Length = 127
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G R R+ K +KDPNKPKRPP+AFFVF+EEFRK +K+++PNV VS +GKA G WKS
Sbjct: 10 GDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKS 69
Query: 97 MSPA 100
+S A
Sbjct: 70 LSDA 73
>gi|295913458|gb|ADG57979.1| transcription factor [Lycoris longituba]
Length = 179
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 43/49 (87%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPNKPKRPPSAFFVF+EEFRK FK++NPN VS VGKAAG KWKSMS
Sbjct: 59 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 107
>gi|414590134|tpg|DAA40705.1| TPA: hypothetical protein ZEAMMB73_374315 [Zea mays]
Length = 120
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 49/64 (76%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G R R+ K +KDPNKPKRPP+AFFVF+EEFRK +K+++PNV VS +GKA G WKS
Sbjct: 10 GDSRLSVRKTKVEKDPNKPKRPPTAFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKS 69
Query: 97 MSPA 100
+S A
Sbjct: 70 LSDA 73
>gi|297836478|ref|XP_002886121.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
gi|297331961|gb|EFH62380.1| hypothetical protein ARALYDRAFT_480649 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 55/77 (71%), Gaps = 1/77 (1%)
Query: 23 KVGKRKAATAKLDSGSKRQGKRE-KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT 81
K G+ KA D K +G++ KK KKDPN+PKRPPSAFFVFLE+FRK F NPN
Sbjct: 2 KGGESKAEATSTDQRLKTRGRKPGKKTKKDPNQPKRPPSAFFVFLEDFRKEFNLANPNNK 61
Query: 82 AVSAVGKAAGGKWKSMS 98
+V+ VGKAAG +WKSM+
Sbjct: 62 SVATVGKAAGARWKSMT 78
>gi|295913708|gb|ADG58095.1| transcription factor [Lycoris longituba]
Length = 190
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/49 (81%), Positives = 43/49 (87%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPNKPKRPPSAFFVF+EEFRK FK++NPN VS VGKAAG KWKSMS
Sbjct: 69 KDPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMS 117
>gi|13877775|gb|AAK43965.1|AF370150_1 putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 57/98 (58%), Gaps = 20/98 (20%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKG + K A + + LK RK GK K KKDPN+PKRPPS
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGK--------------------KTKKDPNQPKRPPS 40
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
AFFVFLE+FRK F NPN +V+ VGKAAG +WK+M+
Sbjct: 41 AFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMT 78
>gi|15227862|ref|NP_179347.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|145323080|ref|NP_001031364.2| high mobility group B4 protein [Arabidopsis thaliana]
gi|310947092|sp|Q42344.1|HMGB4_ARATH RecName: Full=High mobility group B protein 4; AltName: Full=High
mobility group protein G; Short=AtHMGgamma; Short=HMG
gamma; AltName: Full=Nucleosome/chromatin assembly
factor group D 04; Short=Nucleosome/chromatin assembly
factor group D 4
gi|13926177|gb|AAK49570.1|AF370562_1 putative HMG protein [Arabidopsis thaliana]
gi|4914377|gb|AAD32913.1| putative HMG protein [Arabidopsis thaliana]
gi|23297615|gb|AAN12992.1| putative HMG protein [Arabidopsis thaliana]
gi|330251557|gb|AEC06651.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|330251558|gb|AEC06652.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 138
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 57/98 (58%), Gaps = 20/98 (20%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKG + K A + + LK RK GK K KKDPN+PKRPPS
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGK--------------------KTKKDPNQPKRPPS 40
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
AFFVFLE+FRK F NPN +V+ VGKAAG +WK+M+
Sbjct: 41 AFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMT 78
>gi|21592453|gb|AAM64404.1| putative HMG protein [Arabidopsis thaliana]
Length = 138
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 56/98 (57%), Gaps = 20/98 (20%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKG + K A + + LK RK G K KKDPN+PKRPPS
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGN--------------------KTKKDPNQPKRPPS 40
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
AFFVFLE+FRK F NPN +V+ VGKAAG +WKSM+
Sbjct: 41 AFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKSMT 78
>gi|145328748|ref|NP_001077909.1| high mobility group B4 protein [Arabidopsis thaliana]
gi|222423535|dbj|BAH19737.1| AT2G17560 [Arabidopsis thaliana]
gi|330251559|gb|AEC06653.1| high mobility group B4 protein [Arabidopsis thaliana]
Length = 134
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 57/98 (58%), Gaps = 20/98 (20%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKG + K A + + LK RK GK K KKDPN+PKRPPS
Sbjct: 1 MKGGESKAEATSTDQRLKTRGRKAGK--------------------KTKKDPNQPKRPPS 40
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
AFFVFLE+FRK F NPN +V+ VGKAAG +WK+M+
Sbjct: 41 AFFVFLEDFRKEFNLANPNNKSVATVGKAAGARWKAMT 78
>gi|168032698|ref|XP_001768855.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168032700|ref|XP_001768856.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679967|gb|EDQ66408.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679968|gb|EDQ66409.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 43/51 (84%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KDPN PKRPP+AFF+FL EFR+ FK+ENPNV V+AVGKA G KWKSMS A
Sbjct: 7 KDPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEA 57
>gi|148250187|gb|ABQ53545.1| HMG1 protein [Arachis diogoi]
Length = 141
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/53 (77%), Positives = 44/53 (83%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
A KDPNKPKRPPSAFFVF+EEFRK F K++P AVSAVGKAAG KWK MS A
Sbjct: 26 AAKDPNKPKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDA 78
>gi|295913393|gb|ADG57949.1| transcription factor [Lycoris longituba]
Length = 162
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 43/50 (86%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRPPSAFFVF+EEFRK FK++NPN VS VGKAAG KWKSMS A
Sbjct: 42 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAA 91
>gi|295913696|gb|ADG58089.1| transcription factor [Lycoris longituba]
Length = 183
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 43/50 (86%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRPPSAFFVF+EEFRK FK++NPN VS VGKAAG KWKSMS A
Sbjct: 63 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAA 112
>gi|413935042|gb|AFW69593.1| high mobility group protein1 [Zea mays]
Length = 220
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 64/102 (62%), Gaps = 22/102 (21%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGK----REKKAKKDPNKPK 56
MKGAK KGAA+ A AKL SK K R+ KA KDPNKPK
Sbjct: 1 MKGAKSKGAAK------------------ADAKLAVKSKGAEKPAKGRKGKAGKDPNKPK 42
Query: 57 RPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R PSAFFVF+EEFRK FK++NP +V+AVGKAAG +WKS+S
Sbjct: 43 RAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLS 84
>gi|106879575|emb|CAJ38371.1| HMG-protein [Plantago major]
Length = 212
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 76/96 (79%), Gaps = 3/96 (3%)
Query: 6 GKGAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFV 64
G+ A V +E LKP +DRKVGKRKAA A K K++KKAKKDPNKPKRPPSAFFV
Sbjct: 51 GRSKAAVRKETLKPVDDRKVGKRKAAAAP--KVKKPAAKKDKKAKKDPNKPKRPPSAFFV 108
Query: 65 FLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
FLEEFR+TFKKENPN+ AVSAVGKA G KWKS++ A
Sbjct: 109 FLEEFRQTFKKENPNIKAVSAVGKAGGEKWKSLTDA 144
>gi|226505018|ref|NP_001151148.1| LOC100284781 [Zea mays]
gi|195644628|gb|ACG41782.1| HMG1/2-like protein [Zea mays]
Length = 127
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 48/64 (75%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G R R+ K +KDPNKPKRPP+ FFVF+EEFRK +K+++PNV VS +GKA G WKS
Sbjct: 10 GDSRLSVRKTKVEKDPNKPKRPPTTFFVFMEEFRKDYKEKHPNVKQVSVIGKAGGDMWKS 69
Query: 97 MSPA 100
+S A
Sbjct: 70 LSDA 73
>gi|218198917|gb|EEC81344.1| hypothetical protein OsI_24530 [Oryza sativa Indica Group]
Length = 163
Score = 84.7 bits (208), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 65/100 (65%), Gaps = 13/100 (13%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKGAK KGAA KP+ + K K A G R+ KA KDPNKPKR PS
Sbjct: 1 MKGAKSKGAA-------KPDAKLAVKSKGAEKPAAKG------RKGKAGKDPNKPKRAPS 47
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
AFFVF+EEFRK FK++NP +V+AVGKAAG +WKS++ A
Sbjct: 48 AFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEA 87
>gi|194466163|gb|ACF74312.1| high mobility group protein 1 [Arachis hypogaea]
Length = 139
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 53/73 (72%)
Query: 28 KAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVG 87
KAA +L G+++ K KDPNKPKRPPSAFFVF+ EFR+ +KKE+PN +V+ VG
Sbjct: 9 KAADNRLKRKGAGTGRKQAKKAKDPNKPKRPPSAFFVFMSEFREQYKKEHPNNKSVAVVG 68
Query: 88 KAAGGKWKSMSPA 100
KA G +WKSMS A
Sbjct: 69 KAGGDRWKSMSDA 81
>gi|312281681|dbj|BAJ33706.1| unnamed protein product [Thellungiella halophila]
Length = 144
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 48/57 (84%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
R K A KDPNKPKRP SAFFVF+E+FR+TFKKE+P +V+AVGKAAG KWKS+S A
Sbjct: 27 RSKAAAKDPNKPKRPASAFFVFMEDFRETFKKEHPKNKSVAAVGKAAGDKWKSLSDA 83
>gi|295913307|gb|ADG57910.1| transcription factor [Lycoris longituba]
Length = 138
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 43/50 (86%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRPPSAFFVF+EEFRK FK++NPN VS VGKAAG KWKSMS A
Sbjct: 18 DPNKPKRPPSAFFVFMEEFRKQFKEKNPNNKQVSVVGKAAGDKWKSMSAA 67
>gi|1052956|gb|AAC50019.1| high mobility group protein 2 HMG2 [Ipomoea nil]
Length = 146
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 51/60 (85%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
+ K+ KK+ KDPNKPKRPPSAFFVF+E+FRKT+K+++PN +V+AVGKA G KWK ++ A
Sbjct: 22 ETKKSKKSVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAAVGKAGGDKWKQLTDA 81
>gi|413935044|gb|AFW69595.1| high mobility group protein1 [Zea mays]
Length = 97
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 52/101 (51%), Positives = 65/101 (64%), Gaps = 14/101 (13%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKGAK KGAA+ D K+ + K G R+ KA KDPNKPKR PS
Sbjct: 1 MKGAKSKGAAKA--------DAKLAVKSKGAEKPAKG------RKGKAGKDPNKPKRAPS 46
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
AFFVF+EEFRK FK++NP +V+AVGKAAG +WKS+S ++
Sbjct: 47 AFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLSESI 87
>gi|351723773|ref|NP_001235499.1| uncharacterized protein LOC100305957 [Glycine max]
gi|255627099|gb|ACU13894.1| unknown [Glycine max]
Length = 142
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/71 (63%), Positives = 53/71 (74%), Gaps = 5/71 (7%)
Query: 35 DSGSKRQG-----KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKA 89
DS KR+G K+ KKA KDPNKPK PPSAFFVF+ EFR+ FKKE+PN +V+ VGKA
Sbjct: 12 DSRLKRKGAGAGRKQSKKAAKDPNKPKGPPSAFFVFMSEFREQFKKEHPNNKSVAVVGKA 71
Query: 90 AGGKWKSMSPA 100
G KWKS+S A
Sbjct: 72 GGDKWKSLSDA 82
>gi|115470082|ref|NP_001058640.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|3885888|gb|AAC78104.1| high mobility group protein [Oryza sativa Japonica Group]
gi|23345287|gb|AAN28722.1| HMG1 protein [Oryza sativa Indica Group]
gi|30267833|gb|AAP21609.1| HMGB1 [Oryza sativa Indica Group]
gi|54291150|dbj|BAD61823.1| HMGB1 [Oryza sativa Japonica Group]
gi|113596680|dbj|BAF20554.1| Os06g0728000 [Oryza sativa Japonica Group]
gi|213959190|gb|ACJ54929.1| HMG protein [Oryza sativa Japonica Group]
gi|215692803|dbj|BAG88247.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222636260|gb|EEE66392.1| hypothetical protein OsJ_22728 [Oryza sativa Japonica Group]
Length = 157
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 54/100 (54%), Positives = 65/100 (65%), Gaps = 13/100 (13%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKGAK KGAA KP+ + K K A G R+ KA KDPNKPKR PS
Sbjct: 1 MKGAKSKGAA-------KPDAKLAVKSKGAEKPAAKG------RKGKAGKDPNKPKRAPS 47
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
AFFVF+EEFRK FK++NP +V+AVGKAAG +WKS++ A
Sbjct: 48 AFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLTEA 87
>gi|157382900|gb|ABV48885.1| high mobility group protein B3 [Physcomitrella patens]
Length = 158
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 37/50 (74%), Positives = 42/50 (84%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPN PKRPP+AFF+FL EFR+ FK+ENPNV V+AVGKA G KWKSMS A
Sbjct: 49 DPNAPKRPPTAFFIFLNEFREVFKRENPNVKGVTAVGKAGGEKWKSMSEA 98
>gi|302796105|ref|XP_002979815.1| hypothetical protein SELMODRAFT_18312 [Selaginella
moellendorffii]
gi|302807533|ref|XP_002985461.1| hypothetical protein SELMODRAFT_18313 [Selaginella
moellendorffii]
gi|300146924|gb|EFJ13591.1| hypothetical protein SELMODRAFT_18313 [Selaginella
moellendorffii]
gi|300152575|gb|EFJ19217.1| hypothetical protein SELMODRAFT_18312 [Selaginella
moellendorffii]
Length = 84
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 47/56 (83%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+EKKA KDPN PKRPP+AFFVFLE FR+ +K+++P+V V+AVGKAAG KW MS
Sbjct: 1 KKEKKASKDPNLPKRPPTAFFVFLESFRQQYKEDHPDVKGVAAVGKAAGDKWSKMS 56
>gi|357159916|ref|XP_003578598.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 128
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 50/64 (78%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G R R+ KA+KDPN+PKRPPSAFFVF+E FRK +K+++P+V VS VGKA G +WKS
Sbjct: 10 GDSRLSVRKTKAEKDPNQPKRPPSAFFVFMEGFRKDYKEKHPDVKQVSVVGKAGGAEWKS 69
Query: 97 MSPA 100
+S A
Sbjct: 70 LSDA 73
>gi|397396|emb|CAA46876.1| DNA-binding protein [Zea mays]
Length = 168
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 64/102 (62%), Gaps = 22/102 (21%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGK----REKKAKKDPNKPK 56
MKGAK KGAA+ A AKL SK K R+ KA KDPNKPK
Sbjct: 12 MKGAKSKGAAK------------------ADAKLAVKSKGAEKPAKGRKGKAGKDPNKPK 53
Query: 57 RPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R PSAFFVF+EEFRK FK++NP +V+AVGKAAG +WKS+S
Sbjct: 54 RAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLS 95
>gi|729736|sp|P40619.1|HMGL_IPONI RecName: Full=HMG1/2-like protein
Length = 144
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 49/58 (84%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
K+ KKA KDPNKPKRPPSAFFVF+E+FRKT+K+++PN +V+ VGKA G KWK ++ A
Sbjct: 24 KKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAA 81
>gi|79318286|ref|NP_001031074.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|297845040|ref|XP_002890401.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|297336243|gb|EFH66660.1| hypothetical protein ARALYDRAFT_472301 [Arabidopsis lyrata subsp.
lyrata]
gi|332191886|gb|AEE30007.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 142
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 46/55 (83%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R K A KDPNKPKRP SAFFVF+E+FR+TFKKENP +V+ VGKAAG KWKS+S
Sbjct: 27 RGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLS 81
>gi|293335943|ref|NP_001167650.1| high mobility group protein1 [Zea mays]
gi|123378|sp|P27347.1|MNB1B_MAIZE RecName: Full=DNA-binding protein MNB1B; AltName: Full=HMG1-like
protein
gi|22329|emb|CAA41220.1| high mobility group protein [Zea mays]
gi|5441502|emb|CAB46752.1| HMGa protein [Zea mays]
gi|22347617|gb|AAM95942.1| nucleosome/chromatin assembly factor group D protein [Zea mays]
gi|194701148|gb|ACF84658.1| unknown [Zea mays]
gi|194702316|gb|ACF85242.1| unknown [Zea mays]
gi|194703290|gb|ACF85729.1| unknown [Zea mays]
gi|195606194|gb|ACG24927.1| DNA-binding protein MNB1B [Zea mays]
gi|195612638|gb|ACG28149.1| DNA-binding protein MNB1B [Zea mays]
gi|195618138|gb|ACG30899.1| DNA-binding protein MNB1B [Zea mays]
gi|195618904|gb|ACG31282.1| DNA-binding protein MNB1B [Zea mays]
gi|195619012|gb|ACG31336.1| DNA-binding protein MNB1B [Zea mays]
gi|195619124|gb|ACG31392.1| DNA-binding protein MNB1B [Zea mays]
gi|195638824|gb|ACG38880.1| DNA-binding protein MNB1B [Zea mays]
gi|195642004|gb|ACG40470.1| DNA-binding protein MNB1B [Zea mays]
gi|223972731|gb|ACN30553.1| unknown [Zea mays]
gi|223972797|gb|ACN30586.1| unknown [Zea mays]
gi|223973279|gb|ACN30827.1| unknown [Zea mays]
gi|223974975|gb|ACN31675.1| unknown [Zea mays]
gi|413935043|gb|AFW69594.1| high mobility group protein1 [Zea mays]
Length = 157
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/102 (53%), Positives = 64/102 (62%), Gaps = 22/102 (21%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGK----REKKAKKDPNKPK 56
MKGAK KGAA+ A AKL SK K R+ KA KDPNKPK
Sbjct: 1 MKGAKSKGAAK------------------ADAKLAVKSKGAEKPAKGRKGKAGKDPNKPK 42
Query: 57 RPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R PSAFFVF+EEFRK FK++NP +V+AVGKAAG +WKS+S
Sbjct: 43 RAPSAFFVFMEEFRKEFKEKNPKNKSVAAVGKAAGDRWKSLS 84
>gi|217075707|gb|ACJ86213.1| unknown [Medicago truncatula]
gi|388513073|gb|AFK44598.1| unknown [Medicago truncatula]
Length = 142
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 5/78 (6%)
Query: 26 KRKAATAKLDSGSKRQG-----KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV 80
K KA + D+ KR+G K+ KKA KDPNKPKRPPSAFFVF+ +FR+ +KK++PN
Sbjct: 3 KVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNN 62
Query: 81 TAVSAVGKAAGGKWKSMS 98
+V+AVGKA G WKSMS
Sbjct: 63 KSVAAVGKACGEAWKSMS 80
>gi|224081483|ref|XP_002306429.1| high mobility group family [Populus trichocarpa]
gi|222855878|gb|EEE93425.1| high mobility group family [Populus trichocarpa]
Length = 144
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
Query: 23 KVGKRKAATAKLDSGSKRQG-----KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKEN 77
K G+ K+ + D+ KR+G K KKA KDPNKPKRP SAFFVF+E+FRK +K+ +
Sbjct: 2 KGGRSKSDSRNNDAKLKRKGAGAGTKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKESH 61
Query: 78 PNVTAVSAVGKAAGGKWKSMSPA 100
PN +V+AVGKA G KWKS+S A
Sbjct: 62 PNNKSVAAVGKAGGDKWKSLSEA 84
>gi|168028752|ref|XP_001766891.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681870|gb|EDQ68293.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 160
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 63/102 (61%), Gaps = 7/102 (6%)
Query: 2 KGAKGKGAA---RVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
KG KG GA V ++ K D+ + KRK + K + + K KDPN PKRP
Sbjct: 5 KGKKGVGAVAKRDVKEKVTKVQDKDIKKRKGPVKE----PKGRKAKSAKKAKDPNAPKRP 60
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
+AFF+FL EFR+ FKKENPNV V+AVGKA G KWKSMS A
Sbjct: 61 ATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEA 102
>gi|312282031|dbj|BAJ33881.1| unnamed protein product [Thellungiella halophila]
Length = 141
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 45/51 (88%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
A KDPNKPKRP SAFFVF+EEFR+T+KKE+PN +V+AVGKA G KWKS+S
Sbjct: 28 AAKDPNKPKRPASAFFVFMEEFRETYKKEHPNNKSVAAVGKAGGQKWKSLS 78
>gi|308569654|gb|ADO34793.1| high mobility group box 2 protein [Gossypium hirsutum]
Length = 146
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Query: 26 KRKAATAKLDSGSK---RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA 82
K A +AKL K + GK+ KA KDPNKPKRP SAFFVF+EEFR+ +KKE+P +
Sbjct: 7 KSDAKSAKLSVNKKSTTKAGKKSGKAAKDPNKPKRPASAFFVFMEEFREQYKKEHPKNKS 66
Query: 83 VSAVGKAAGGKWKSMSPA 100
V+AVGKA G KWKS+S A
Sbjct: 67 VAAVGKAGGDKWKSLSEA 84
>gi|8886929|gb|AAF80615.1|AC069251_8 F2D10.18 [Arabidopsis thaliana]
Length = 662
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 46/55 (83%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R K A KDPNKPKRP SAFFVF+E+FR+TFKKENP +V+ VGKAAG KWKS+S
Sbjct: 404 RGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLS 458
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/91 (51%), Positives = 61/91 (67%), Gaps = 4/91 (4%)
Query: 8 GAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLE 67
G+ VS+ +K K R + KL S +K+ K K A KDPNKPKRP SAFFVF+E
Sbjct: 513 GSEEVSESIMKGAKSKAETR---STKL-SVTKKPAKGAKGAAKDPNKPKRPSSAFFVFME 568
Query: 68 EFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+FR T+K+E+P +V+AVGKA G KWKS+S
Sbjct: 569 DFRVTYKEEHPKNKSVAAVGKAGGEKWKSLS 599
>gi|118484838|gb|ABK94286.1| unknown [Populus trichocarpa]
Length = 144
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/83 (55%), Positives = 59/83 (71%), Gaps = 5/83 (6%)
Query: 23 KVGKRKAATAKLDSGSKRQG-----KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKEN 77
K G+ K+ + D+ KR+G K KKA KDPNKPKRP SAFFVF+E+FRK +K+ +
Sbjct: 2 KGGRSKSDSRNNDAKLKRKGAGAGTKASKKAAKDPNKPKRPASAFFVFMEDFRKQYKESH 61
Query: 78 PNVTAVSAVGKAAGGKWKSMSPA 100
PN +V+AVGKA G KWKS+S A
Sbjct: 62 PNNKSVAAVGKAGGDKWKSLSEA 84
>gi|436424|emb|CAA54168.1| HMG 1 protein [Pisum sativum]
Length = 154
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/51 (78%), Positives = 44/51 (86%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KDPNKPKRPPSAFFVF+E+FRK FKK N + AVSAVGKAAG KWKSM+ A
Sbjct: 40 KDPNKPKRPPSAFFVFMEDFRKQFKKGNADNKAVSAVGKAAGAKWKSMTEA 90
>gi|18394898|ref|NP_564123.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|75219648|sp|O49596.1|HMGB2_ARATH RecName: Full=High mobility group B protein 2; AltName: Full=High
mobility group protein B 1; Short=AtHMGbeta1; Short=HMG
beta 1; AltName: Full=Nucleosome/chromatin assembly
factor group D 02; Short=Nucleosome/chromatin assembly
factor group D 2
gi|13877971|gb|AAK44063.1|AF370248_1 unknown protein [Arabidopsis thaliana]
gi|2832359|emb|CAA74401.1| HMG protein [Arabidopsis thaliana]
gi|17104699|gb|AAL34238.1| unknown protein [Arabidopsis thaliana]
gi|21536964|gb|AAM61305.1| unknown [Arabidopsis thaliana]
gi|26452113|dbj|BAC43146.1| unknown protein [Arabidopsis thaliana]
gi|225897948|dbj|BAH30306.1| hypothetical protein [Arabidopsis thaliana]
gi|332191885|gb|AEE30006.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 144
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 46/55 (83%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R K A KDPNKPKRP SAFFVF+E+FR+TFKKENP +V+ VGKAAG KWKS+S
Sbjct: 27 RGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLS 81
>gi|145323960|ref|NP_001077569.1| high mobility group B2 protein [Arabidopsis thaliana]
gi|332191887|gb|AEE30008.1| high mobility group B2 protein [Arabidopsis thaliana]
Length = 143
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/55 (72%), Positives = 46/55 (83%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R K A KDPNKPKRP SAFFVF+E+FR+TFKKENP +V+ VGKAAG KWKS+S
Sbjct: 27 RGKAAAKDPNKPKRPASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLS 81
>gi|1813329|dbj|BAA19156.1| HMG-1 [Canavalia gladiata]
Length = 141
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 53/71 (74%), Gaps = 5/71 (7%)
Query: 35 DSGSKRQG-----KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKA 89
D+ KR+G K+ KKA KDPNKPKRPPSAFFVF+ EFR+ +KKE+P +V+ VGKA
Sbjct: 12 DNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQYKKEHPTNKSVAVVGKA 71
Query: 90 AGGKWKSMSPA 100
G KWKS+S A
Sbjct: 72 GGDKWKSLSDA 82
>gi|47027098|gb|AAT08762.1| HMG transcription factor [Hyacinthus orientalis]
Length = 158
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/51 (74%), Positives = 43/51 (84%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KDPNKPKRPPSAFFVF+E+FRK FK++NPN VS VGKA GKWK+MS A
Sbjct: 38 KDPNKPKRPPSAFFVFMEDFRKQFKEKNPNNKQVSVVGKACWGKWKTMSAA 88
>gi|449456873|ref|XP_004146173.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449495123|ref|XP_004159740.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|63020536|gb|AAY26151.1| high mobility group protein [Cucumis sativus]
Length = 146
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 43/50 (86%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRP SAFFVF+EEFRK +KKE+PN +V+AVGKA G KWKSMS A
Sbjct: 34 DPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDA 83
>gi|357484153|ref|XP_003612363.1| HMG1/2-like protein [Medicago truncatula]
gi|355513698|gb|AES95321.1| HMG1/2-like protein [Medicago truncatula]
Length = 94
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 58/86 (67%), Gaps = 10/86 (11%)
Query: 18 KPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKEN 77
KP D ++ ++ A T G ++ K KDPNKPKRPPSAFFVF+ EFR+ FKKEN
Sbjct: 9 KPADNRLKRKGAGT----------GTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKEN 58
Query: 78 PNVTAVSAVGKAAGGKWKSMSPAVSI 103
P+ +V+ VGKA G +WK++S AV I
Sbjct: 59 PSNKSVAVVGKAGGKEWKALSDAVRI 84
>gi|194466165|gb|ACF74313.1| high mobility group protein 2 [Arachis hypogaea]
Length = 153
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 43/53 (81%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
A KDPNK KRPPSAFFVF+EEFRK F K++P AVSAVGKAAG KWK MS A
Sbjct: 38 AAKDPNKLKRPPSAFFVFMEEFRKQFNKDHPENKAVSAVGKAAGAKWKQMSDA 90
>gi|157382898|gb|ABV48884.1| high mobility group protein B2 [Physcomitrella patens]
Length = 165
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 62/102 (60%), Gaps = 7/102 (6%)
Query: 2 KGAKGKGAA---RVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRP 58
KG KG GA V ++ K D+ + KRK + K + K KDPN PKRP
Sbjct: 5 KGKKGVGAVAKRDVKEKVTKVQDKDIKKRKGPVKE----PKGGKAKSAKKAKDPNAPKRP 60
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
+AFF+FL EFR+ FKKENPNV V+AVGKA G KWKSMS A
Sbjct: 61 ATAFFIFLNEFREVFKKENPNVKGVAAVGKAGGEKWKSMSEA 102
>gi|297845042|ref|XP_002890402.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
gi|297336244|gb|EFH66661.1| hypothetical protein ARALYDRAFT_472304 [Arabidopsis lyrata subsp.
lyrata]
Length = 141
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 57/76 (75%), Gaps = 3/76 (3%)
Query: 25 GKRKAAT--AKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA 82
GK K T AKL S +K+ K K A KDPNKPKRP SAFFVF+E+FR+T+KKE+P +
Sbjct: 6 GKSKTETRNAKL-SVTKKPAKGGKGAAKDPNKPKRPSSAFFVFMEDFRETYKKEHPKNKS 64
Query: 83 VSAVGKAAGGKWKSMS 98
V+AVGKA G KWKS+S
Sbjct: 65 VAAVGKAGGEKWKSLS 80
>gi|224083306|ref|XP_002306980.1| high mobility group family [Populus trichocarpa]
gi|222856429|gb|EEE93976.1| high mobility group family [Populus trichocarpa]
Length = 160
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 45/54 (83%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KA KDPNKPKRP SAFFVF+EEFR+ +K+E+P +V+AVGKA G KWKS+S A
Sbjct: 36 KAAKDPNKPKRPASAFFVFMEEFREQYKREHPKNKSVAAVGKAGGDKWKSLSEA 89
>gi|2196548|gb|AAB61215.1| DNA-binding protein [Nicotiana tabacum]
Length = 142
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRPPSAFFVF+EEFRKT+K+++PN +V+AVGKA G WK +S A
Sbjct: 32 DPNKPKRPPSAFFVFMEEFRKTYKEKHPNNKSVAAVGKAGGDAWKKLSEA 81
>gi|304651500|gb|ADM47612.1| high mobility group protein [Hevea brasiliensis]
Length = 146
Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 45/54 (83%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KA KDPNKPKRP SAFFVF+EEFR+ +KKE+P +V+AVGKA G KWKS+S A
Sbjct: 31 KAAKDPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSEA 84
>gi|296088654|emb|CBI37645.3| unnamed protein product [Vitis vinifera]
Length = 154
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/100 (51%), Positives = 64/100 (64%), Gaps = 10/100 (10%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKG K K A +K D K+ +K A + K+ K+EK A KDPNKPKRP S
Sbjct: 1 MKGGKSKAAE------VKRADSKLSVKKKGAAAV---GKKTAKKEK-AVKDPNKPKRPAS 50
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
AFFVF+EEFRK +K+++P +VS VGKA G KWKS+S A
Sbjct: 51 AFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEA 90
>gi|346467547|gb|AEO33618.1| hypothetical protein [Amblyomma maculatum]
Length = 146
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 56/79 (70%), Gaps = 5/79 (6%)
Query: 22 RKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT 81
+ G KAA KL + ++GK KA KDPNKPKR PSAFFVFL+EFRK FK++NP
Sbjct: 14 KNAGSAKAADTKL---AVKKGKT--KAAKDPNKPKRAPSAFFVFLDEFRKEFKEKNPENK 68
Query: 82 AVSAVGKAAGGKWKSMSPA 100
+V+AV KA G +WKSMS A
Sbjct: 69 SVAAVTKAGGARWKSMSDA 87
>gi|357484151|ref|XP_003612362.1| HMG1/2-like protein [Medicago truncatula]
gi|355513697|gb|AES95320.1| HMG1/2-like protein [Medicago truncatula]
Length = 140
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 10/83 (12%)
Query: 18 KPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKEN 77
KP D ++ ++ A T G ++ K KDPNKPKRPPSAFFVF+ EFR+ FKKEN
Sbjct: 9 KPADNRLKRKGAGT----------GTKQSKKAKDPNKPKRPPSAFFVFMSEFRERFKKEN 58
Query: 78 PNVTAVSAVGKAAGGKWKSMSPA 100
P+ +V+ VGKA G +WK++S A
Sbjct: 59 PSNKSVAVVGKAGGKEWKALSDA 81
>gi|309243128|gb|ADD74180.2| high mobility group box 3 protein [Gossypium hirsutum]
Length = 139
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/50 (72%), Positives = 42/50 (84%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRP SAFFVF+EEFRK +K+ NP+ +VSAVGKA G KWKSM+ A
Sbjct: 34 DPNKPKRPASAFFVFMEEFRKQYKEANPDNRSVSAVGKAGGEKWKSMTDA 83
>gi|295913099|gb|ADG57812.1| transcription factor [Lycoris longituba]
Length = 120
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 45/54 (83%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KA KDPNKPKR PSAFFVF+E+FRK FK++NP +V+AVGKA G +WKSMS A
Sbjct: 2 KAGKDPNKPKRAPSAFFVFMEDFRKEFKEKNPKNKSVAAVGKAGGERWKSMSDA 55
>gi|357123079|ref|XP_003563240.1| PREDICTED: DNA-binding protein MNB1B-like [Brachypodium
distachyon]
Length = 160
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 63/98 (64%), Gaps = 13/98 (13%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPS 60
MKGAK KGA +K + + K K A G R+ KA KDPNKPKR PS
Sbjct: 1 MKGAKSKGA-------VKADTKLAVKSKGAEKPAAKG------RKGKAGKDPNKPKRAPS 47
Query: 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
AFFVF++EFRK FK++NP +V+AVGKAAG +WK++S
Sbjct: 48 AFFVFMDEFRKEFKEKNPKNKSVAAVGKAAGERWKTLS 85
>gi|295913196|gb|ADG57857.1| transcription factor [Lycoris longituba]
Length = 143
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 43/52 (82%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KA KDPNKPKRPPSAFFVF+E FRK FK +NP +++AVGKA G +WKSMS
Sbjct: 25 KAGKDPNKPKRPPSAFFVFMEGFRKEFKDKNPKNKSIAAVGKAGGERWKSMS 76
>gi|359476973|ref|XP_002280084.2| PREDICTED: high mobility group B2 protein-like isoform 1 [Vitis
vinifera]
Length = 156
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 39 KRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+ K+EK A KDPNKPKRP SAFFVF+EEFRK +K+++P +VS VGKA G KWKS+S
Sbjct: 32 KKTAKKEK-AVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLS 90
Query: 99 PA 100
A
Sbjct: 91 EA 92
>gi|359476975|ref|XP_003631923.1| PREDICTED: high mobility group B2 protein-like isoform 2 [Vitis
vinifera]
Length = 125
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 49/62 (79%), Gaps = 1/62 (1%)
Query: 39 KRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+ K+EK A KDPNKPKRP SAFFVF+EEFRK +K+++P +VS VGKA G KWKS+S
Sbjct: 32 KKTAKKEK-AVKDPNKPKRPASAFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLS 90
Query: 99 PA 100
A
Sbjct: 91 EA 92
>gi|357640485|gb|AET87126.1| high mobility group B2 protein [Brassica napus]
Length = 145
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 43/48 (89%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPNKPKRP SAFFVF+E+FR+T+KK++PN +V+AVGKA G KWKS+S
Sbjct: 34 DPNKPKRPASAFFVFMEDFRQTYKKDHPNNKSVAAVGKAGGEKWKSLS 81
>gi|225457566|ref|XP_002272299.1| PREDICTED: high mobility group-like isoform 1 [Vitis vinifera]
gi|359491843|ref|XP_003634333.1| PREDICTED: high mobility group-like isoform 2 [Vitis vinifera]
gi|297745562|emb|CBI40727.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 42/50 (84%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRP SAFFVF+EEFRK +K+++P+ +VS VGKA G KWKSMS A
Sbjct: 40 DPNKPKRPASAFFVFMEEFRKQYKEKHPSNKSVSVVGKAGGDKWKSMSEA 89
>gi|79318295|ref|NP_001031075.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191889|gb|AEE30010.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 147
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
S +K+ K K A KDPNKPKRP SAFFVF+E+FR T+K+E+P +V+AVGKA G KWK
Sbjct: 16 SVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWK 75
Query: 96 SMS 98
S+S
Sbjct: 76 SLS 78
>gi|729737|sp|P40620.1|HMGL_VICFA RecName: Full=HMG1/2-like protein
Length = 149
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPNKPKRPPSAFFVF+ +FR+ +KK++PN +V+AVGKA G +WKS+S
Sbjct: 40 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLS 88
>gi|145323962|ref|NP_001077570.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|332191890|gb|AEE30011.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 140
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
S +K+ K K A KDPNKPKRP SAFFVF+E+FR T+K+E+P +V+AVGKA G KWK
Sbjct: 16 SVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWK 75
Query: 96 SMS 98
S+S
Sbjct: 76 SLS 78
>gi|18394900|ref|NP_564124.1| high mobility group B3 protein [Arabidopsis thaliana]
gi|75220405|sp|P93047.1|HMGB3_ARATH RecName: Full=High mobility group B protein 3; AltName: Full=High
mobility group protein B 2; Short=AtHMGbeta2; Short=HMG
beta 2; AltName: Full=Nucleosome/chromatin assembly
factor group D 03; Short=Nucleosome/chromatin assembly
factor group D 3
gi|15724174|gb|AAL06479.1|AF411789_1 At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|1694976|emb|CAA70691.1| HMG1 [Arabidopsis thaliana]
gi|2832361|emb|CAA74402.1| HMG protein [Arabidopsis thaliana]
gi|20453325|gb|AAM19901.1| At1g20690/F2D10_15 [Arabidopsis thaliana]
gi|21537072|gb|AAM61413.1| unknown [Arabidopsis thaliana]
gi|22530942|gb|AAM96975.1| expressed protein [Arabidopsis thaliana]
gi|23198424|gb|AAN15739.1| expressed protein [Arabidopsis thaliana]
gi|332191888|gb|AEE30009.1| high mobility group B3 protein [Arabidopsis thaliana]
Length = 141
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 49/63 (77%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
S +K+ K K A KDPNKPKRP SAFFVF+E+FR T+K+E+P +V+AVGKA G KWK
Sbjct: 16 SVTKKPAKGAKGAAKDPNKPKRPSSAFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWK 75
Query: 96 SMS 98
S+S
Sbjct: 76 SLS 78
>gi|224065681|ref|XP_002301918.1| high mobility group family [Populus trichocarpa]
gi|222843644|gb|EEE81191.1| high mobility group family [Populus trichocarpa]
Length = 152
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 42/50 (84%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRP SAFFVF+EEFR+ +KKE+P +V+AVGKA G KWKS+S A
Sbjct: 39 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAA 88
>gi|4468042|emb|CAB37859.1| unnamed protein product [Vicia faba var. minor]
Length = 74
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 43/49 (87%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPNKPKRPPSAFFVF+ +FR+ +KK++PN +V+AVGKA G +WKS+S
Sbjct: 1 KDPNKPKRPPSAFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLS 49
>gi|302754440|ref|XP_002960644.1| hypothetical protein SELMODRAFT_75453 [Selaginella
moellendorffii]
gi|300171583|gb|EFJ38183.1| hypothetical protein SELMODRAFT_75453 [Selaginella
moellendorffii]
Length = 134
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 42/48 (87%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN+PK+P +AFF+FLEEFR+T+KK++P+V V+A+GKA G WKS+S
Sbjct: 32 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLS 79
>gi|118488125|gb|ABK95882.1| unknown [Populus trichocarpa]
Length = 151
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 42/50 (84%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRP SAFFVF+EEFR+ +KKE+P +V+AVGKA G KWKS+S A
Sbjct: 39 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAA 88
>gi|302803281|ref|XP_002983394.1| hypothetical protein SELMODRAFT_117986 [Selaginella
moellendorffii]
gi|300149079|gb|EFJ15736.1| hypothetical protein SELMODRAFT_117986 [Selaginella
moellendorffii]
Length = 123
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 42/48 (87%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN+PK+P +AFF+FLEEFR+T+KK++P+V V+A+GKA G WKS+S
Sbjct: 18 DPNQPKKPATAFFIFLEEFRQTYKKDHPDVKGVAAIGKAGGDMWKSLS 65
>gi|308569658|gb|ADO34794.1| high mobility group box 4 protein [Gossypium hirsutum]
Length = 148
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 42/50 (84%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRP SAFFVF+EEFR+ +KKE+P +V+AVGKA G KWKS+S A
Sbjct: 35 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGEKWKSLSDA 84
>gi|308569660|gb|ADO34795.1| high mobility group box 1 protein [Gossypium hirsutum]
Length = 142
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 42/50 (84%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPNKPKRP SAFFVF+EEFR+ +KK++P +V+AVGKA G KWKS+S A
Sbjct: 31 DPNKPKRPASAFFVFMEEFREQYKKDHPKNKSVAAVGKAGGDKWKSLSEA 80
>gi|255539248|ref|XP_002510689.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223551390|gb|EEF52876.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 145
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 41/48 (85%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPNKPKRP SAFFVF+EEFR+ +KKE+P +V+AVGKA G +WKSMS
Sbjct: 34 DPNKPKRPASAFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDRWKSMS 81
>gi|302790391|ref|XP_002976963.1| hypothetical protein SELMODRAFT_175895 [Selaginella
moellendorffii]
gi|300155441|gb|EFJ22073.1| hypothetical protein SELMODRAFT_175895 [Selaginella
moellendorffii]
Length = 156
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN+PKRP +AFFVFLEE+RKTFK ++PN+ V+AVGKA G WK ++
Sbjct: 51 DPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLT 98
>gi|302797885|ref|XP_002980703.1| hypothetical protein SELMODRAFT_38818 [Selaginella
moellendorffii]
gi|300151709|gb|EFJ18354.1| hypothetical protein SELMODRAFT_38818 [Selaginella
moellendorffii]
Length = 83
Score = 75.1 bits (183), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN+PKRP +AFFVFLEE+RKTFK ++PN+ V+AVGKA G WK ++
Sbjct: 7 DPNQPKRPATAFFVFLEEYRKTFKDKHPNIKGVAAVGKAGGDAWKRLT 54
>gi|295913113|gb|ADG57819.1| transcription factor [Lycoris longituba]
Length = 108
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 54/73 (73%), Gaps = 2/73 (2%)
Query: 30 ATAKL--DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVG 87
AT KL G+ ++ +++ KA KDPNKPKR SAFFVF+E FRK FK++NP +V+AVG
Sbjct: 13 ATDKLAVKKGAPKKTEKKVKAGKDPNKPKRAASAFFVFMEGFRKEFKEKNPKNKSVAAVG 72
Query: 88 KAAGGKWKSMSPA 100
KA G KWKSMS A
Sbjct: 73 KAGGEKWKSMSDA 85
>gi|351722065|ref|NP_001236719.1| uncharacterized protein LOC100306558 [Glycine max]
gi|255628875|gb|ACU14782.1| unknown [Glycine max]
Length = 209
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 39/48 (81%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPP+AFFVFL++FRK+FK+ NP+ V VGK AG KW+SM+
Sbjct: 99 DPNMPKRPPTAFFVFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMT 146
>gi|357508231|ref|XP_003624404.1| High mobility group protein [Medicago truncatula]
gi|355499419|gb|AES80622.1| High mobility group protein [Medicago truncatula]
Length = 144
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 42/53 (79%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKAK DP+KPKRP S FF+F+ +FR F+KENP+ VS VGKAAG KW+SMS
Sbjct: 4 KKAKSDPSKPKRPQSPFFLFMSDFRVRFRKENPDNKYVSVVGKAAGEKWRSMS 56
>gi|116785888|gb|ABK23898.1| unknown [Picea sitchensis]
Length = 220
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 45/55 (81%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
REKKA+ DPN+PK+P +AFFVF+++FRKT+K+ NP+V + VGK G KWK+MS
Sbjct: 98 REKKAR-DPNQPKKPATAFFVFMDDFRKTYKETNPDVKGAAQVGKEGGLKWKAMS 151
>gi|371721822|gb|AEX55234.1| HMG transcription factor [Allium sativum]
Length = 115
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 40/46 (86%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
PKRPPSAFFVF+E+FRK FK++NP+ VSAVGKAAG KWKS++ A
Sbjct: 2 PKRPPSAFFVFMEDFRKIFKEKNPDNKQVSAVGKAAGDKWKSLTAA 47
>gi|729738|sp|P40621.1|HMGL_WHEAT RecName: Full=HMG1/2-like protein
gi|21803|emb|CAA77641.1| high mobility group protein [Triticum aestivum]
gi|114145392|dbj|BAF30985.1| high mobility globular protein [Triticum aestivum]
Length = 161
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/103 (50%), Positives = 63/103 (61%), Gaps = 23/103 (22%)
Query: 1 MKGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGK-----REKKAKKDPNKP 55
MKGAK KGAA+ A AKL SK K ++ KA KDPNKP
Sbjct: 1 MKGAKSKGAAK------------------ADAKLAVKSKGAEKPAAKGKKGKAGKDPNKP 42
Query: 56 KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR PSAFFVF+ EFR+ FK++NP +V+AVGKAAG +WKS+S
Sbjct: 43 KRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLS 85
>gi|225463454|ref|XP_002275908.1| PREDICTED: high mobility group B protein 14 [Vitis vinifera]
gi|297740668|emb|CBI30850.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 36 SGSKRQGKREKKAKK-DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
SG+K + K +K++++ D KPK+PP+AFF FLE+FRK F+++NP+V ++ +GKA G KW
Sbjct: 68 SGNKAKAKTKKRSQRVDSKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKW 127
Query: 95 KSMS 98
K+M+
Sbjct: 128 KTMT 131
>gi|950053|emb|CAA90679.1| HMG1/2-like protein [Hordeum vulgare subsp. vulgare]
Length = 160
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 41/48 (85%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPNKPKR PSAFFVF+ EFR+ FK++NP +V+AVGKAAG +WKS+S
Sbjct: 38 DPNKPKRAPSAFFVFMGEFREEFKQKNPKNKSVAAVGKAAGERWKSLS 85
>gi|346467231|gb|AEO33460.1| hypothetical protein [Amblyomma maculatum]
Length = 115
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
E K +KDPNKPKRPP+ FFVF+E FRK +K+ +P +V+ VGKA G KWKS+S +
Sbjct: 1 EEGKGEKDPNKPKRPPTGFFVFMEGFRKQYKEAHPKNKSVAVVGKAGGEKWKSLSES 57
>gi|255557355|ref|XP_002519708.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223541125|gb|EEF42681.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 198
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 40/51 (78%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
AK D KPK+PP+AFF FLE+FRK F+K+NP+V ++ +GKA G KWK M+
Sbjct: 103 AKLDSKKPKKPPTAFFYFLEDFRKDFQKQNPDVKSMREIGKACGEKWKMMT 153
>gi|223942599|gb|ACN25383.1| unknown [Zea mays]
gi|414881085|tpg|DAA58216.1| TPA: hypothetical protein ZEAMMB73_949955 [Zea mays]
Length = 118
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 51/77 (66%)
Query: 27 RKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAV 86
+ A A S +KR+ + + K DP PK+PP+AFF F+E+FRK +K+E P+V ++ +
Sbjct: 13 KTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEI 72
Query: 87 GKAAGGKWKSMSPAVSI 103
GKA G KW +M+ VSI
Sbjct: 73 GKACGEKWNTMTFEVSI 89
>gi|449468356|ref|XP_004151887.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
gi|449517965|ref|XP_004166014.1| PREDICTED: HMG1/2-like protein-like [Cucumis sativus]
Length = 142
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 51/83 (61%), Gaps = 11/83 (13%)
Query: 18 KPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKEN 77
KPN +K+ +RKA + K K KKD N PKRP + FFVF+EEFRKT+K++
Sbjct: 13 KPNPQKLKQRKA-----------EMKSTKSKKKDQNAPKRPATTFFVFMEEFRKTYKEQF 61
Query: 78 PNVTAVSAVGKAAGGKWKSMSPA 100
P+ A VGK G KWKSMS A
Sbjct: 62 PDAKAGPVVGKVGGEKWKSMSDA 84
>gi|356536465|ref|XP_003536758.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 200
Score = 71.6 bits (174), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 38/48 (79%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPP+AFF FL++FRK+FK+ NP+ V VGK AG KW+SM+
Sbjct: 99 DPNMPKRPPTAFFAFLDDFRKSFKEANPDSKDVKRVGKEAGEKWRSMT 146
>gi|15237040|ref|NP_195282.1| high mobility group B5 protein [Arabidopsis thaliana]
gi|75219649|sp|O49597.1|HMGB5_ARATH RecName: Full=High mobility group B protein 5; AltName: Full=High
mobility group protein D; Short=AtHMGdelta; Short=HMG
delta; AltName: Full=Nucleosome/chromatin assembly
factor group D 05; Short=Nucleosome/chromatin assembly
factor group D 5
gi|2832363|emb|CAA74404.1| HMG protein [Arabidopsis thaliana]
gi|3367575|emb|CAA20027.1| HMG delta protein [Arabidopsis thaliana]
gi|7270508|emb|CAB80273.1| HMG delta protein [Arabidopsis thaliana]
gi|21553743|gb|AAM62836.1| HMG delta protein [Arabidopsis thaliana]
gi|98961063|gb|ABF59015.1| At4g35570 [Arabidopsis thaliana]
gi|222423786|dbj|BAH19859.1| AT4G35570 [Arabidopsis thaliana]
gi|332661132|gb|AEE86532.1| high mobility group B5 protein [Arabidopsis thaliana]
Length = 125
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D K +G + K KDPN+PK+PPS FFVFL++FRK F NP+ +V VG+AAG KW
Sbjct: 14 DDRLKVRGNKVGKKTKDPNRPKKPPSPFFVFLDDFRKEFNLANPDNKSVGNVGRAAGKKW 73
Query: 95 KSMS 98
K+M+
Sbjct: 74 KTMT 77
>gi|388501678|gb|AFK38905.1| unknown [Medicago truncatula]
Length = 152
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K K D KPK+PP+AFF FLE+FRK FK +NP+V ++ +GKA G KWK+M+
Sbjct: 56 KQKIDAKKPKKPPTAFFYFLEDFRKEFKDQNPDVKSMRDIGKACGEKWKTMT 107
>gi|359484115|ref|XP_002267697.2| PREDICTED: high mobility group B protein 7-like [Vitis vinifera]
gi|147815109|emb|CAN61363.1| hypothetical protein VITISV_034306 [Vitis vinifera]
gi|297742725|emb|CBI35359.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 70.9 bits (172), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN PKRPP+AFF+F+++FRK +K+ NP+ VS V K G KWKSM+
Sbjct: 94 KDPNMPKRPPTAFFLFMDDFRKEYKESNPDSKNVSVVAKEGGEKWKSMT 142
>gi|255566393|ref|XP_002524182.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223536551|gb|EEF38197.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 155
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 44/57 (77%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+++K KD + PKRP SAFF+F++EFRK FK++ P+ AVSAVGKA G KWKS+S
Sbjct: 35 SRKKKNVSKDTDAPKRPASAFFIFMDEFRKYFKEKYPDNKAVSAVGKAGGEKWKSLS 91
>gi|449464956|ref|XP_004150195.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
gi|449531370|ref|XP_004172659.1| PREDICTED: high mobility group B protein 7-like [Cucumis sativus]
Length = 207
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%), Gaps = 2/61 (3%)
Query: 40 RQGKREKKAKKD--PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
++ + EKK KKD PN PKRPP+AFF+F+++FRK++K+ NP+ V V K G KWKSM
Sbjct: 94 KKSRTEKKGKKDKDPNAPKRPPTAFFIFMDDFRKSYKEANPDSKGVKEVAKEGGEKWKSM 153
Query: 98 S 98
+
Sbjct: 154 T 154
>gi|449433698|ref|XP_004134634.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
gi|449505924|ref|XP_004162605.1| PREDICTED: high mobility group B protein 14-like [Cucumis sativus]
Length = 161
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 39/48 (81%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
D NKPK+PP+AFF FL++FRK F+++NP+V + VGKA G KWK+M+
Sbjct: 69 DVNKPKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTMT 116
>gi|388495062|gb|AFK35597.1| unknown [Lotus japonicus]
Length = 162
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 40/52 (76%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K + D NKPK+PP+AFF FLE+FRK F+ +NP+V + +GK+ G KWK+M+
Sbjct: 62 KQRIDANKPKKPPTAFFYFLEDFRKEFQVQNPDVKTMRDIGKSCGEKWKTMT 113
>gi|168050181|ref|XP_001777538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671023|gb|EDQ57581.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 314
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 37/51 (72%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
A KD + PKRPPSA+F+F+E FRK FK NP+V V+A KA G KW SMS
Sbjct: 186 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMS 236
>gi|157382896|gb|ABV48883.1| high mobility group protein B1 [Physcomitrella patens]
Length = 215
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 37/51 (72%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
A KD + PKRPPSA+F+F+E FRK FK NP+V V+A KA G KW SMS
Sbjct: 130 AAKDSDMPKRPPSAYFIFMETFRKEFKAANPDVKGVTASAKAGGEKWLSMS 180
>gi|388499756|gb|AFK37944.1| unknown [Lotus japonicus]
Length = 197
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%), Gaps = 2/55 (3%)
Query: 46 KKAKK--DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+KAKK DPN+PKRPP+AFFVFL++FRK FK+ NP V VGK G KW++M+
Sbjct: 91 EKAKKVEDPNQPKRPPTAFFVFLDDFRKEFKEANPGSKDVKRVGKEGGEKWRAMT 145
>gi|297597325|ref|NP_001043799.2| Os01g0666200 [Oryza sativa Japonica Group]
gi|56202161|dbj|BAD73639.1| HMG protein-like [Oryza sativa Japonica Group]
gi|125527174|gb|EAY75288.1| hypothetical protein OsI_03176 [Oryza sativa Indica Group]
gi|215693961|dbj|BAG89148.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255673529|dbj|BAF05713.2| Os01g0666200 [Oryza sativa Japonica Group]
Length = 133
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 39/48 (81%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
D +PK+PP+AFF F+E+FRKT+K+ENP+V ++ VGKA G KW +M+
Sbjct: 45 DRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMT 92
>gi|356524949|ref|XP_003531090.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 148
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 39/48 (81%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
D KPK+PP+AFF FLE+FRK F+++NP+V ++ +GKA G KWK+M+
Sbjct: 56 DAMKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMT 103
>gi|125527178|gb|EAY75292.1| hypothetical protein OsI_03182 [Oryza sativa Indica Group]
Length = 133
Score = 68.9 bits (167), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 39/48 (81%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
D +PK+PP+AFF F+E+FRKT+K+ENP+V ++ VGKA G KW +M+
Sbjct: 45 DRRRPKKPPTAFFYFMEDFRKTYKEENPSVKSMQEVGKACGEKWNTMT 92
>gi|226503761|ref|NP_001151622.1| HMG1/2-like protein [Zea mays]
gi|195648164|gb|ACG43550.1| HMG1/2-like protein [Zea mays]
gi|414881086|tpg|DAA58217.1| TPA: HMG1/2-like protein [Zea mays]
Length = 115
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%)
Query: 29 AATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGK 88
A A S +KR+ + + K DP PK+PP+AFF F+E+FRK +K+E P+V ++ +GK
Sbjct: 15 VAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGK 74
Query: 89 AAGGKWKSMS 98
A G KW +M+
Sbjct: 75 ACGEKWNTMT 84
>gi|351724833|ref|NP_001237839.1| uncharacterized protein LOC100305607 [Glycine max]
gi|255626057|gb|ACU13373.1| unknown [Glycine max]
Length = 150
Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 39/48 (81%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
D KP++PP+AFF FLE+FRK F+++NP+V ++ +GKA G KWK+M+
Sbjct: 58 DAMKPRKPPTAFFYFLEDFRKEFQEQNPDVRSMRDIGKACGEKWKTMT 105
>gi|194700664|gb|ACF84416.1| unknown [Zea mays]
gi|194701704|gb|ACF84936.1| unknown [Zea mays]
gi|413923412|gb|AFW63344.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
gi|413923413|gb|AFW63345.1| hypothetical protein ZEAMMB73_127996 [Zea mays]
Length = 139
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 37/45 (82%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KPKRPPSAFFVF+ EFR+ ++ ++P +V+AV KAAG KW+SMS
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMS 77
>gi|162460809|ref|NP_001105483.1| high mobility group protein3 [Zea mays]
gi|1845197|emb|CAA69606.1| HMGc2 [Zea mays]
gi|223947405|gb|ACN27786.1| unknown [Zea mays]
gi|413923414|gb|AFW63346.1| HMGc2 protein [Zea mays]
Length = 138
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 37/45 (82%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KPKRPPSAFFVF+ EFR+ ++ ++P +V+AV KAAG KW+SMS
Sbjct: 33 KPKRPPSAFFVFMSEFRQEYQAQHPGNKSVAAVSKAAGEKWRSMS 77
>gi|125583208|gb|EAZ24139.1| hypothetical protein OsJ_07880 [Oryza sativa Japonica Group]
Length = 170
Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GKR+K A KPKRPPSAFFVF+ EFR+ ++ +P+ +V+AV KAAG KW++MS
Sbjct: 47 GKRKKAAA--SGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMS 101
>gi|224097317|ref|XP_002310906.1| high mobility group family [Populus trichocarpa]
gi|118483462|gb|ABK93630.1| unknown [Populus trichocarpa]
gi|222853809|gb|EEE91356.1| high mobility group family [Populus trichocarpa]
Length = 201
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+DPN PKRPP+AFF+F+++FRK +K+ NP+ V V K G +WKSM+
Sbjct: 100 RDPNAPKRPPTAFFLFMDDFRKEYKEANPDSKDVKKVAKEGGVRWKSMT 148
>gi|115447831|ref|NP_001047695.1| Os02g0670400 [Oryza sativa Japonica Group]
gi|50251344|dbj|BAD28320.1| putative high mobility group protein [Oryza sativa Japonica
Group]
gi|50252158|dbj|BAD28154.1| putative high mobility group protein [Oryza sativa Japonica
Group]
gi|113537226|dbj|BAF09609.1| Os02g0670400 [Oryza sativa Japonica Group]
Length = 145
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 43/57 (75%), Gaps = 2/57 (3%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GKR+K A KPKRPPSAFFVF+ EFR+ ++ +P+ +V+AV KAAG KW++MS
Sbjct: 22 GKRKKAAA--SGKPKRPPSAFFVFMSEFRQEYQAAHPDNKSVAAVSKAAGEKWRAMS 76
>gi|357517687|ref|XP_003629132.1| HMG1/2-like protein [Medicago truncatula]
gi|355523154|gb|AET03608.1| HMG1/2-like protein [Medicago truncatula]
Length = 75
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 48/66 (72%), Gaps = 5/66 (7%)
Query: 26 KRKAATAKLDSGSKRQG-----KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV 80
K KA + D+ KR+G K+ KKA KDPNKPKRPPSAFFVF+ +FR+ +KK++PN
Sbjct: 3 KVKADSKPADNRLKRKGAGAGRKQTKKAAKDPNKPKRPPSAFFVFMSDFREQYKKDHPNN 62
Query: 81 TAVSAV 86
+V+A+
Sbjct: 63 KSVAAL 68
>gi|357135842|ref|XP_003569517.1| PREDICTED: high mobility group B protein 14-like [Brachypodium
distachyon]
Length = 127
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 36/48 (75%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP +PK+PP+AFF F+E+FR FK ENP+V ++ +G+A G KW M+
Sbjct: 39 DPRRPKKPPTAFFYFMEDFRDKFKAENPSVKSMQDIGRACGEKWNKMA 86
>gi|18700443|dbj|BAB85204.1| high mobility group box protein 2 [Oryza sativa Japonica Group]
gi|125540625|gb|EAY87020.1| hypothetical protein OsI_08417 [Oryza sativa Indica Group]
Length = 145
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 42/57 (73%), Gaps = 2/57 (3%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GKR+K A KPKRPPSAFFVF+ EFR+ ++ +P +V+AV KAAG KW++MS
Sbjct: 22 GKRKKAAA--SGKPKRPPSAFFVFMSEFRQEYQAAHPGNKSVAAVSKAAGEKWRAMS 76
>gi|357136925|ref|XP_003570053.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 144
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 57 RPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
RPPSAFFVF+ EFR+ ++ E+PN +V+ V KAAG KW+SMS A
Sbjct: 36 RPPSAFFVFMSEFRQEYQAEHPNNKSVANVSKAAGEKWRSMSDA 79
>gi|242053921|ref|XP_002456106.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
gi|241928081|gb|EES01226.1| hypothetical protein SORBIDRAFT_03g030540 [Sorghum bicolor]
Length = 109
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 43/63 (68%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
S KR+ + + K D PK+PP+AFF F+E+FRK +K+E P+V ++ +GKA G KW
Sbjct: 6 SSPKRKSRPKPAGKGDRRAPKKPPTAFFYFMEDFRKVYKQEKPSVKSMQEIGKACGEKWN 65
Query: 96 SMS 98
+M+
Sbjct: 66 TMA 68
>gi|326525246|dbj|BAK07893.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 215
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 36/45 (80%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KRPP+AFF+F+++FR FK +P+ V+AVGKAAG KW+SM+
Sbjct: 100 KAKRPPTAFFLFMKDFRVEFKTSHPDEKGVAAVGKAAGEKWRSMT 144
>gi|357144307|ref|XP_003573245.1| PREDICTED: high mobility group B protein 7-like [Brachypodium
distachyon]
Length = 218
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 36/46 (78%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
N KRPP+AFF+F+++FR FK +P+ VSAVGKAAG KWK+M+
Sbjct: 99 NGKKRPPTAFFIFMKDFRLEFKASHPDEKGVSAVGKAAGVKWKAMT 144
>gi|356528116|ref|XP_003532651.1| PREDICTED: high mobility group protein B2-like [Glycine max]
Length = 234
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%), Gaps = 4/52 (7%)
Query: 51 DPNKPKRPPSAFF----VFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
D KPK+ PSAFF +F+E+FRK F+++NP++ ++ +GKA G KWK+M+
Sbjct: 41 DAMKPKKSPSAFFPLFSLFMEDFRKEFQEQNPDIKSMYDIGKACGEKWKTMT 92
>gi|195619220|gb|ACG31440.1| HMG1/2-like protein [Zea mays]
Length = 139
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KPKRPPSAFFVF+ EFR+ ++ +P +V+ V KAAG KW++MS
Sbjct: 32 KPKRPPSAFFVFMSEFRQQYQALHPGNKSVATVSKAAGEKWRAMS 76
>gi|125559825|gb|EAZ05273.1| hypothetical protein OsI_27476 [Oryza sativa Indica Group]
gi|125559834|gb|EAZ05282.1| hypothetical protein OsI_27485 [Oryza sativa Indica Group]
Length = 204
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KRPP+AFF+F+ +FRK +K E+P+ +VSAV K G +WKSMS
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMS 135
>gi|1845195|emb|CAA69605.1| HMGc1 [Zea mays]
gi|5441504|emb|CAB46753.1| HMGc1 protein [Zea mays]
gi|194690322|gb|ACF79245.1| unknown [Zea mays]
gi|194704052|gb|ACF86110.1| unknown [Zea mays]
gi|219885481|gb|ACL53115.1| unknown [Zea mays]
gi|413938184|gb|AFW72735.1| HMG-like nucleosome/chromatin assembly factor D isoform 1 [Zea
mays]
gi|413938185|gb|AFW72736.1| HMG-like nucleosome/chromatin assembly factor D isoform 2 [Zea
mays]
Length = 139
Score = 61.2 bits (147), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KPKRPPSAFFVF+ EFR+ ++ +P +V+ V KAAG KW++MS
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMS 76
>gi|115474323|ref|NP_001060758.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|38637289|dbj|BAD03552.1| putative HMG type nucleosome/chromatin assembly factor D [Oryza
sativa Japonica Group]
gi|113622727|dbj|BAF22672.1| Os08g0101100 [Oryza sativa Japonica Group]
gi|125601889|gb|EAZ41214.1| hypothetical protein OsJ_25719 [Oryza sativa Japonica Group]
gi|213959174|gb|ACJ54921.1| HMG type nucleosome/chromatin assembly factor [Oryza sativa
Japonica Group]
gi|215697671|dbj|BAG91665.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 203
Score = 61.2 bits (147), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KRPP+AFF+F+ +FRK +K E+P+ +VSAV K G +WKSMS
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMS 135
>gi|293333310|ref|NP_001168929.1| uncharacterized protein LOC100382741 [Zea mays]
gi|223973791|gb|ACN31083.1| unknown [Zea mays]
Length = 204
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KPKRPPSAFFVF+ EFR+ ++ +P +V+ V KAAG KW++MS
Sbjct: 32 KPKRPPSAFFVFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMS 76
>gi|18403553|ref|NP_565788.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|75219838|sp|O64702.2|HMG14_ARATH RecName: Full=High mobility group B protein 14; AltName:
Full=Nucleosome/chromatin assembly factor group D 14
gi|20197083|gb|AAC26692.2| putative HMG protein [Arabidopsis thaliana]
gi|20197160|gb|AAM14948.1| putative HMG protein [Arabidopsis thaliana]
gi|21536857|gb|AAM61189.1| putative HMG protein [Arabidopsis thaliana]
gi|26452914|dbj|BAC43535.1| putative HMG protein [Arabidopsis thaliana]
gi|28973511|gb|AAO64080.1| putative HMG protein [Arabidopsis thaliana]
gi|330253881|gb|AEC08975.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 151
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 35/44 (79%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
PK+P +AFF FL++FRK +++ENP+V ++ +GK G KWK+M+
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREIGKTCGEKWKTMT 106
>gi|297826905|ref|XP_002881335.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297327174|gb|EFH57594.1| high mobility group family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 152
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAV-SAVGKAAGGKWKSMS 98
PK+PP+AFF FLE+FRK +++ENP V ++ +GK G KWK+M+
Sbjct: 64 PKKPPTAFFFFLEDFRKQYQEENPEVKSMREVIGKTCGEKWKTMT 108
>gi|339716048|gb|AEJ88271.1| putative HMG DNA-binding protein [Wolffia arrhiza]
Length = 148
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/48 (72%), Positives = 43/48 (89%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPNKPKR PSAFFVFLEEFRK +K+++P+ +V+AVGKAAG KW+SMS
Sbjct: 37 DPNKPKRAPSAFFVFLEEFRKEYKEKHPDNKSVAAVGKAAGAKWRSMS 84
>gi|413943061|gb|AFW75710.1| hypothetical protein ZEAMMB73_996127 [Zea mays]
Length = 95
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVSI 103
R+ KA KDPNKPKR P+AFFV + EFRK FK++NP + +V+AV G WKS V I
Sbjct: 35 RKAKAGKDPNKPKRAPNAFFVLMGEFRKEFKEKNPKIKSVAAVELNFPG-WKSCRRQVEI 93
>gi|162461550|ref|NP_001105075.1| high mobility group box protein2 [Zea mays]
gi|17017394|gb|AAL33651.1|AF440222_1 HMG-like nucleosome/chromatin assembly factor D [Zea mays]
Length = 139
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KPKRPPSAFF F+ EFR+ ++ +P +V+ V KAAG KW++MS
Sbjct: 32 KPKRPPSAFFAFMSEFRQEYQALHPGNKSVATVSKAAGEKWRAMS 76
>gi|52219178|ref|NP_001004674.1| high-mobility group box 2b [Danio rerio]
gi|51858850|gb|AAH81415.1| High-mobility group box 2 [Danio rerio]
gi|182889482|gb|AAI65150.1| Hmgb2 protein [Danio rerio]
Length = 214
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKRPPSAFFVF E+R T K E+PN+T + + K G W S
Sbjct: 91 KKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNLT-IGEIAKKLGELWSKQS 139
>gi|213982973|ref|NP_001135648.1| uncharacterized protein LOC100216207 [Xenopus (Silurana)
tropicalis]
gi|156914901|gb|AAI52619.1| Hmgb2 protein [Danio rerio]
gi|197245630|gb|AAI68534.1| Unknown (protein for MGC:181066) [Xenopus (Silurana) tropicalis]
Length = 214
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKRPPSAFFVF E+R T K E+PN+T + + K G W S
Sbjct: 91 KKDPNAPKRPPSAFFVFCSEYRPTVKSEHPNLT-IGEIAKKLGELWSKQS 139
>gi|346472777|gb|AEO36233.1| hypothetical protein [Amblyomma maculatum]
Length = 208
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 37/46 (80%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
NKPKR P+AFF+F+++FRK +K+ +P+ +V++V K G +W+SM+
Sbjct: 102 NKPKRAPTAFFLFMDDFRKEYKELHPDNKSVASVAKEGGERWRSMT 147
>gi|357513707|ref|XP_003627142.1| HMG1/2-like protein [Medicago truncatula]
gi|355521164|gb|AET01618.1| HMG1/2-like protein [Medicago truncatula]
Length = 248
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
GKREK KD N KR P+ FFVF++EFRKTFK+ N + V VGK G KW+
Sbjct: 195 GKREKV--KDSNAAKRSPTDFFVFMDEFRKTFKEANLDSKDVKRVGKEDGEKWR 246
>gi|224080027|ref|XP_002305996.1| high mobility group family [Populus trichocarpa]
gi|222848960|gb|EEE86507.1| high mobility group family [Populus trichocarpa]
Length = 165
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 33/40 (82%)
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
P+AFF FLE+FRK F+++NP+V ++ VGKA G KWK+M+
Sbjct: 81 PTAFFYFLEDFRKEFQEQNPDVKSMREVGKACGEKWKTMT 120
>gi|79324303|ref|NP_001031480.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
gi|330253882|gb|AEC08976.1| high mobility group (HMG1/2) domain-containing protein [Arabidopsis
thaliana]
Length = 152
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAV-SAVGKAAGGKWKSMS 98
PK+P +AFF FL++FRK +++ENP+V ++ +GK G KWK+M+
Sbjct: 63 PKKPATAFFFFLDDFRKQYQEENPDVKSMREVIGKTCGEKWKTMT 107
>gi|335892928|gb|AEH59759.1| high mobility group box 1 [Lethenteron camtschaticum]
Length = 208
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
+G+R + KKDPN PKRPPSAFF++ E+R + ENP +T + ++ K G W
Sbjct: 82 KGERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENPGLT-IGSIAKKLGEMW 134
>gi|1419611|emb|CAA67363.1| HMG [Lampetra fluviatilis]
Length = 208
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
+G+R + KKDPN PKRPPSAFF++ E+R + ENP +T + ++ K G W
Sbjct: 82 KGERGSRKKKDPNAPKRPPSAFFIYCAEYRSKVRAENPGLT-IGSIAKKLGEMW 134
>gi|357165293|ref|XP_003580334.1| PREDICTED: HMG1/2-like protein-like [Brachypodium distachyon]
Length = 135
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D+ K GKR KKA KPKR P+ FF FL EFR + +++P V+AV KAAG KW
Sbjct: 8 DASFKASGKR-KKATGGVAKPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKW 66
Query: 95 KSMS 98
+SMS
Sbjct: 67 RSMS 70
>gi|18420676|ref|NP_568431.1| high-mobility group B6 protein [Arabidopsis thaliana]
gi|75245985|sp|Q8LDF9.1|HMGB7_ARATH RecName: Full=High mobility group B protein 7; AltName:
Full=Nucleosome/chromatin assembly factor group D 07;
Short=Nucleosome/chromatin assembly factor group D 7
gi|21554154|gb|AAM63233.1| unknown [Arabidopsis thaliana]
gi|26452394|dbj|BAC43282.1| unknown protein [Arabidopsis thaliana]
gi|332005781|gb|AED93164.1| high-mobility group B6 protein [Arabidopsis thaliana]
Length = 241
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
EKK+ NKPKRP +AFF+F+ +FRKTFK E+ A A K G KWKS++
Sbjct: 105 EKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEHNGSLAKDA-AKIGGEKWKSLT 157
>gi|62955511|ref|NP_001017769.1| high mobility group protein B3 [Danio rerio]
gi|62202670|gb|AAH93186.1| High-mobility group box 3b [Danio rerio]
gi|182890656|gb|AAI64996.1| Hmgb3b protein [Danio rerio]
Length = 198
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GK+ +K KKDPN P+RPPS FF+F E R K +NP++ + V K GG W ++S
Sbjct: 81 GKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSL-GIGDVAKKLGGMWNNLS 136
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSP 99
AK DP KPK SA+ F++ R+ K+NP VT S K +WK+MSP
Sbjct: 2 AKGDPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSP 54
>gi|51858856|gb|AAH81424.1| Hmgb3b protein [Danio rerio]
Length = 166
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GK+ +K KKDPN P+RPPS FF+F E R K +NP++ + V K GG W ++S
Sbjct: 81 GKKGRKQKKDPNAPRRPPSGFFLFCAEQRPIIKAQNPSL-GIGDVAKKLGGMWNNLS 136
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSP 99
AK DP KPK SA+ F++ R+ K+NP VT S K +WK+MSP
Sbjct: 2 AKGDPGKPKGKMSAYAYFVKTCREEHNKKNPGVTVNFSEFSKKCSERWKTMSP 54
>gi|297812491|ref|XP_002874129.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
gi|297319966|gb|EFH50388.1| hypothetical protein ARALYDRAFT_910356 [Arabidopsis lyrata subsp.
lyrata]
Length = 193
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
EKK+ NKPKRP +AFF+F+ +FRKTFK E+ A A K G KWKS++
Sbjct: 105 EKKSSSTSNKPKRPLTAFFIFMNDFRKTFKTEHNGSLAKDA-AKIGGEKWKSLT 157
>gi|9759080|dbj|BAB09558.1| unnamed protein product [Arabidopsis thaliana]
Length = 226
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
EKK+ NKPKRP +AFF+F+ +FRKTFK E+ N + K G KWKS++
Sbjct: 90 EKKSSSTSNKPKRPLTAFFIFMSDFRKTFKSEH-NGSLAKDAAKIGGEKWKSLT 142
>gi|356510782|ref|XP_003524113.1| PREDICTED: high mobility group B protein 14-like [Glycine max]
Length = 165
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K K D K K+P S FF FLE+FRK F+ NP+V + +GKA+ KWK+M+
Sbjct: 59 KQKFDAMKQKKPLSGFFYFLEDFRKEFQVRNPDVKSKRDIGKASAKKWKTMT 110
>gi|297665615|ref|XP_002811141.1| PREDICTED: high mobility group protein B4 [Pongo abelii]
Length = 189
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GK +K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYVGKTKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKW 94
V KA G W
Sbjct: 122 Q-VAKATGKMW 131
>gi|71027705|ref|XP_763496.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350449|gb|EAN31213.1| high mobility group protein, putative [Theileria parva]
Length = 94
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKS 96
SK GK+ K+AKKDPN PKR S++ F +E R +ENP++ V+AVGK G W S
Sbjct: 6 SKSAGKKSKRAKKDPNAPKRALSSYMFFAKEKRAELVRENPDLARDVAAVGKLVGAAWNS 65
Query: 97 M 97
+
Sbjct: 66 L 66
>gi|356494961|ref|XP_003516349.1| PREDICTED: high mobility group B protein 7-like [Glycine max]
Length = 178
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA 90
DPN PKRPP+ FFVFL++FRK+FK+ NP+ VGK A
Sbjct: 99 DPNMPKRPPTTFFVFLDDFRKSFKEANPDSKDAKRVGKEA 138
>gi|225715078|gb|ACO13385.1| High mobility group protein B3 [Esox lucius]
Length = 204
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GKR KKAKKDPN PKRPPS FFVF E R K ++P+ + V K G W +++
Sbjct: 82 GKRGKKAKKDPNAPKRPPSGFFVFCAEQRPKIKAQHPSF-GIGDVAKKLGEAWNNLT 137
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSP 99
AK D KPK SA+ F++ R+ KK+NP + S K G+WK+MSP
Sbjct: 2 AKGDARKPKGKMSAYAYFVQTCREEHKKKNPEIPVNFSEFSKKCAGRWKTMSP 54
>gi|221220328|gb|ACM08825.1| High mobility group protein B3 [Salmo salar]
Length = 203
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GKR KKA KDPN PKRPPS FFVF E R K ++PN + V K G W +++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF-GIGDVAKKLGEMWNNLT 137
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSP 99
AK D KPK SA+ F++ R+ K +NP + S K G+WK+MSP
Sbjct: 2 AKGDARKPKGKMSAYAYFVQTCREEHKNKNPEIPVNFSEFSKKCSGRWKTMSP 54
>gi|221220618|gb|ACM08970.1| High mobility group protein B3 [Salmo salar]
gi|223646914|gb|ACN10215.1| High mobility group protein B3 [Salmo salar]
gi|223672777|gb|ACN12570.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GKR KKA KDPN PKRPPS FFVF E R K ++PN + V K G W +++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF-GIGDVAKKLGEMWNNLT 137
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSP 99
AK D KPK SA+ F++ R+ K +NP + S K G+WK+MSP
Sbjct: 2 AKGDARKPKGKMSAYAYFVQTCREEHKNKNPEIPVNFSEFSKKCSGRWKTMSP 54
>gi|221219912|gb|ACM08617.1| High mobility group protein B3 [Salmo salar]
Length = 201
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GKR KKA KDPN PKRPPS FFVF E R K ++PN + V K G W +++
Sbjct: 82 GKRGKKALKDPNAPKRPPSGFFVFCAEQRPKIKAQHPNF-GIGDVAKKLGEMWNNLT 137
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSP 99
AK D KPK SA+ F++ R+ K +NP + S K G+WK+MSP
Sbjct: 2 AKGDARKPKGKMSAYAYFVQTCREEHKNKNPEIPVNFSEFSKKCSGRWKTMSP 54
>gi|414869181|tpg|DAA47738.1| TPA: hypothetical protein ZEAMMB73_864709 [Zea mays]
Length = 198
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
GKR+K KPKRPPSAFFVF+ EFR+ ++ ++P ++ V K AG KW +
Sbjct: 143 GKRKKVIMS--GKPKRPPSAFFVFMSEFRQEYQVQHPGNKSIVVVSKTAGEKWHA 195
>gi|242080163|ref|XP_002444850.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
gi|241941200|gb|EES14345.1| hypothetical protein SORBIDRAFT_07g000230 [Sorghum bicolor]
Length = 221
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KR P+AFF+F+++FRK FK +P+ +V+ V K G KWKSM+
Sbjct: 96 KRKRSPTAFFLFMDDFRKEFKAAHPDNKSVATVAKEGGEKWKSMT 140
>gi|432895946|ref|XP_004076239.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 206
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN PKRPPSAFF+F EFR K E+P +T + V K G W S S
Sbjct: 89 KDPNAPKRPPSAFFIFCSEFRPKVKGESPGLT-IGDVAKRLGEMWNSTS 136
>gi|346468357|gb|AEO34023.1| hypothetical protein [Amblyomma maculatum]
Length = 734
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G K + R +K ++D NKPKRPPSA+F++L E R KK+NP+ +++ V K AG WK
Sbjct: 543 GMKERKPRRQKKERDANKPKRPPSAYFLWLAENRDKIKKDNPSF-SITDVTKRAGELWKE 601
Query: 97 MS 98
++
Sbjct: 602 VT 603
>gi|401885246|gb|EJT49369.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 2479]
gi|406694772|gb|EKC98094.1| nonhistone protein 6 [Trichosporon asahii var. asahii CBS 8904]
Length = 108
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+ KKDPNKPKR SA+ F++++R+ K ENP+ +VG+ G KW+ MS
Sbjct: 14 KRGKKDPNKPKRALSAYMFFVQDWRERIKSENPDAD-FGSVGRLLGAKWQEMS 65
>gi|58268918|ref|XP_571615.1| nonhistone protein 6 [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112618|ref|XP_774852.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818300|sp|P0CO25.1|NHP6_CRYNB RecName: Full=Non-histone chromosomal protein 6
gi|338818301|sp|P0CO24.1|NHP6_CRYNJ RecName: Full=Non-histone chromosomal protein 6
gi|50257500|gb|EAL20205.1| hypothetical protein CNBF0170 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227850|gb|AAW44308.1| nonhistone protein 6, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 116
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+ KKDPNKPKR SA+ F++++R+ K ENP T VGK G KW+ M+
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKTENPEAT-FGDVGKLLGIKWREMN 70
>gi|443684506|gb|ELT88434.1| hypothetical protein CAPTEDRAFT_172235 [Capitella teleta]
Length = 734
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPNKPKRP SA+F++L E R+ K ENP+ V+ + K AG +WK ++
Sbjct: 546 DPNKPKRPQSAYFLWLNEMREEIKAENPD-AGVTDIAKLAGQRWKEVT 592
>gi|213514690|ref|NP_001133170.1| high-mobility group box 2 [Salmo salar]
gi|197632301|gb|ACH70874.1| high-mobility group box 2 [Salmo salar]
gi|221219834|gb|ACM08578.1| High mobility group protein B2 [Salmo salar]
gi|221220870|gb|ACM09096.1| High mobility group protein B2 [Salmo salar]
gi|223646276|gb|ACN09896.1| High mobility group protein B2 [Salmo salar]
gi|223646962|gb|ACN10239.1| High mobility group protein B2 [Salmo salar]
gi|223672123|gb|ACN12243.1| High mobility group protein B2 [Salmo salar]
gi|223672825|gb|ACN12594.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
GSK GKR KKDPN PKRPPSAFFVF E R K +NP + + + K G W
Sbjct: 83 GSKAAGKR----KKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM-GIGDIAKQLGLLWGK 137
Query: 97 MSP 99
+P
Sbjct: 138 QTP 140
>gi|225709792|gb|ACO10742.1| High mobility group protein B2 [Caligus rogercresseyi]
Length = 215
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
GSK GKR KKDPN PKRPPSAFFVF E R K +NP + + + K G W
Sbjct: 83 GSKAAGKR----KKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM-GIGDIAKQLGLLWGK 137
Query: 97 MSP 99
+P
Sbjct: 138 QTP 140
>gi|405121060|gb|AFR95829.1| nonhistone protein 6 [Cryptococcus neoformans var. grubii H99]
Length = 116
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+ KKDPNKPKR SA+ F++++R+ K ENP T VGK G KW+ M+
Sbjct: 19 KRTKKDPNKPKRALSAYMFFVQDYRERIKAENPEAT-FGDVGKLLGIKWREMN 70
>gi|66840992|emb|CAI64395.1| putative high mobility group protein [Triticum aestivum]
Length = 112
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 32/45 (71%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KPKR P+ FF FL EFR + +++P V+AV KAAG KW+SMS
Sbjct: 22 KPKRAPTPFFAFLAEFRPQYMEKHPEAKGVAAVTKAAGEKWRSMS 66
>gi|342319487|gb|EGU11435.1| Non-histone chromosomal protein [Rhodotorula glutinis ATCC
204091]
Length = 142
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 6/57 (10%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT------AVSAVGKAAGGKWKSM 97
+AKKDPN PKRP SA+ F ++ R K+ENP+VT ++ +GK G KWK +
Sbjct: 17 RAKKDPNAPKRPLSAYMHFSQDQRSVVKEENPDVTFVGHCESIGEIGKILGAKWKEL 73
>gi|609553|gb|AAA74556.1| HMG-T2 [Oncorhynchus mykiss]
Length = 215
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
GSK GKR KKDPN PKRPPSAFFVF E R K +NP + + + K G W
Sbjct: 83 GSKAAGKR----KKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM-GIGDIAKQLGLLWGK 137
Query: 97 MSP 99
+P
Sbjct: 138 QTP 140
>gi|221221606|gb|ACM09464.1| High mobility group protein B2 [Salmo salar]
gi|223646184|gb|ACN09850.1| High mobility group protein B2 [Salmo salar]
gi|223646756|gb|ACN10136.1| High mobility group protein B2 [Salmo salar]
gi|223672031|gb|ACN12197.1| High mobility group protein B2 [Salmo salar]
gi|223672611|gb|ACN12487.1| High mobility group protein B2 [Salmo salar]
Length = 214
Score = 54.3 bits (129), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
GSK GKR KKDPN PKRPPSAFFVF E R K +NP + + + K G W
Sbjct: 83 GSKAAGKR----KKDPNAPKRPPSAFFVFCAEHRGRIKADNPGM-GIGDIAKQLGLLWGK 137
Query: 97 MSP 99
+P
Sbjct: 138 QTP 140
>gi|195618458|gb|ACG31059.1| HMG1/2-like protein [Zea mays]
gi|195640852|gb|ACG39894.1| HMG1/2-like protein [Zea mays]
gi|223975443|gb|ACN31909.1| unknown [Zea mays]
gi|413925109|gb|AFW65041.1| HMG type nucleosome/chromatin assembly factor DNucleasome/chromatin
assembly factor D protein NFD106 [Zea mays]
Length = 212
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KR P+AFF+F+++FRK FK +P+ +V+ V K G +WKSM+
Sbjct: 91 KRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKSMT 135
>gi|148235321|ref|NP_001089163.1| high mobility group box 3 [Xenopus laevis]
gi|55824420|gb|AAV66347.1| high mobility group B3b protein [Xenopus laevis]
gi|114108280|gb|AAI23148.1| LOC734200 protein [Xenopus laevis]
Length = 201
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G ++GKR K DPN PKRPPS FF+F EFR K NP ++ + + K G W
Sbjct: 77 DFGPVKKGKRNK----DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDIAKKLGEMW 131
Query: 95 KSMS 98
++S
Sbjct: 132 NNLS 135
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMS 98
AK+DP KPK SA+ F++ R+ KK+NP + + K +W+SMS
Sbjct: 2 AKRDPKKPKGKMSAYAYFVQTCREEHKKKNPEIPVNFAEFSKKCSERWRSMS 53
>gi|349604600|gb|AEQ00107.1| High mobility group protein B3-like protein, partial [Equus
caballus]
Length = 118
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KKDPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 2 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 52
>gi|410917315|ref|XP_003972132.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 214
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
+K KKDPN PKRPPSAFFVF + R K++NP ++ + + K G W + P
Sbjct: 86 RKKKKDPNAPKRPPSAFFVFCSDHRPKIKEDNPGIS-IGDIAKKLGELWSTQGP 138
>gi|384246550|gb|EIE20040.1| hypothetical protein COCSUDRAFT_83556 [Coccomyxa subellipsoidea
C-169]
Length = 140
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
++AKK + P+RP SA+ F+ EFR+ +K ++P V VS VG AAG W+S++P
Sbjct: 11 RRAKKPKDAPRRPKSAYMFFMAEFREKWKVDHPEVNRVSDVGVAAGEAWRSLTP 64
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 20 NDRKVGKRKAATAKLDSGSKRQGKREKKAKK--DPNKPKRPPSAFFVFLEEFRKTFKKEN 77
++ VG + A++ + K KK ++ +P + +RP SA+F FL FR FK++N
Sbjct: 71 EEQSVGSKATYAAEIAEYASAHPKPPKKRQRSREPGQLRRPTSAYFFFLNTFRDAFKEDN 130
Query: 78 P 78
P
Sbjct: 131 P 131
>gi|162462896|ref|NP_001105076.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|17017396|gb|AAL33652.1|AF440223_1 HMG type nucleosome/chromatin assembly factor D [Zea mays]
gi|22135475|gb|AAM93218.1|AF527617_1 nucleasome/chromatin assembly factor D protein NFD106 [Zea mays]
Length = 154
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KR P+AFF+F+++FRK FK +P+ +V+ V K G +WKSM+
Sbjct: 33 KRKRSPTAFFLFMDDFRKEFKATHPDNKSVATVAKEGGERWKSMT 77
>gi|348543650|ref|XP_003459296.1| PREDICTED: high mobility group protein B2-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 10/91 (10%)
Query: 16 ALKPNDRKVGKRKAATAKLDSGSKRQ--------GKREKKAKKDPNKPKRPPSAFFVFLE 67
AL P+D+K + A K+ + + GKR +K +KDPN PKRPPSAFFVF
Sbjct: 51 ALSPSDKKCFEDMAKADKVRYNREMKDYVPPKGFGKRGRK-RKDPNAPKRPPSAFFVFCS 109
Query: 68 EFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E+R + K++ P ++ + K G W +S
Sbjct: 110 EYRPSVKQQYPGLS-IGDCAKKLGEMWSKLS 139
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPA 100
+KD NKPK SA+ F++ R+ +K+NP + + K +WK++SP+
Sbjct: 3 RKDINKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSPS 55
>gi|321259756|ref|XP_003194598.1| nonhistone protein 6 [Cryptococcus gattii WM276]
gi|317461070|gb|ADV22811.1| Nonhistone protein 6, putative [Cryptococcus gattii WM276]
Length = 110
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+++KKDPNKPKR SA+ F++++R+ K ENP T VGK G KW+ M+
Sbjct: 19 RRSKKDPNKPKRALSAYMFFVQDYRERIKAENPEAT-FGDVGKLLGIKWREMN 70
>gi|221219844|gb|ACM08583.1| High mobility group protein B2 [Salmo salar]
Length = 211
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KKDPN PKRPPSAFFVF EFR T K+E P + + K G W +P
Sbjct: 91 KKDPNAPKRPPSAFFVFSAEFRPTVKQEFPGCS-IGQCAKKLGIMWGQQTPT 141
>gi|355565174|gb|EHH21663.1| hypothetical protein EGK_04785, partial [Macaca mulatta]
Length = 201
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 43 KREKKAK-KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KRE K K KDPN PKRPPSAFF+F E+R K E+P ++ + VGK G W
Sbjct: 82 KRETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVGKKPGEMW 133
>gi|440912073|gb|ELR61675.1| Putative high mobility group protein B3-like protein, partial [Bos
grunniens mutus]
Length = 190
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D GS + GK KKDPN PKRPPS FF+F EF K NP ++ + V K G W
Sbjct: 76 DYGSAKGGK-----KKDPNAPKRPPSGFFLFFSEFCSKIKSTNPGIS-IGDVAKKLGEMW 129
Query: 95 KSMS 98
++S
Sbjct: 130 NNLS 133
>gi|336272321|ref|XP_003350917.1| hypothetical protein SMAC_04223 [Sordaria macrospora k-hell]
gi|380090684|emb|CCC04854.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 103
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 38 SKRQGKREKK-AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
SK GK EK+ AKKDPN PKR SA+ F E R+ ++ENP VT VGK G +WK+
Sbjct: 8 SKTTGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGVT-FGQVGKILGERWKA 66
Query: 97 MS 98
+S
Sbjct: 67 LS 68
>gi|297812105|ref|XP_002873936.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
gi|297319773|gb|EFH50195.1| hypothetical protein ARALYDRAFT_488801 [Arabidopsis lyrata subsp.
lyrata]
Length = 224
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
EKK+ NKPKRP +AFF+F+ +FRKTFK E+ A A K G KW S++
Sbjct: 102 EKKSSSTSNKPKRPLTAFFIFMNDFRKTFKTEHNGSFAKDA-AKIGGEKWMSLT 154
>gi|344252855|gb|EGW08959.1| TRAF family member-associated NF-kappa-B activator [Cricetulus
griseus]
Length = 427
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+R FK E+P + ++ V K G W + +
Sbjct: 299 KKKFKDPNAPKRPPSAFFLFCSEYRPKFKGEHPGL-SIGDVAKKLGEMWNNTA 350
>gi|296810682|ref|XP_002845679.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
gi|238843067|gb|EEQ32729.1| non-histone chromosomal protein 6 [Arthroderma otae CBS 113480]
Length = 103
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K KKDPN PKR SA+ +F E R ++ENPN+T VGK G +WK++S
Sbjct: 17 EKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNIT-FGQVGKVLGERWKALS 68
>gi|255544145|ref|XP_002513135.1| DNA-binding protein MNB1B, putative [Ricinus communis]
gi|223548146|gb|EEF49638.1| DNA-binding protein MNB1B, putative [Ricinus communis]
Length = 196
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 32/41 (78%)
Query: 58 PPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
PP+AFF+FL+EFRKTFK+ NP+ V V K AG KWK+M+
Sbjct: 103 PPTAFFIFLDEFRKTFKEANPDSKDVKRVAKEAGEKWKAMT 143
>gi|302497713|ref|XP_003010856.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
gi|291174401|gb|EFE30216.1| hypothetical protein ARB_02895 [Arthroderma benhamiae CBS 112371]
Length = 106
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K KKDPN PKR SA+ +F E R ++ENPN+T VGK G +WK++S
Sbjct: 15 EKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNIT-FGQVGKVLGERWKALS 66
>gi|432953329|ref|XP_004085352.1| PREDICTED: high mobility group protein B2-like isoform 1 [Oryzias
latipes]
Length = 200
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 16 ALKPNDRKVGKRKAATAKLDSGSKRQ--------GKREKKAKKDPNKPKRPPSAFFVFLE 67
AL P+D+K + A K+ + GKR +K +KDPN PKRPPSAFFVF
Sbjct: 51 ALSPSDKKCFEDMAKADKVRYNREMCDYVPPKGFGKRGRK-RKDPNAPKRPPSAFFVFCS 109
Query: 68 EFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E+R + K++ P ++ + K G W +S
Sbjct: 110 EYRPSVKQQYPGLS-IGDCAKKLGEMWSKLS 139
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPA 100
+KD NKPK SA+ F++ R+ +K+NP + + K +WK++SP+
Sbjct: 3 RKDVNKPKGKTSAYAFFVQTCREEHRKKNPEQSVNFAEFSKKCSERWKALSPS 55
>gi|118344004|ref|NP_001071827.1| FACT complex subunit SSRP1 [Ciona intestinalis]
gi|110287972|sp|Q4H2R2.1|SSRP1_CIOIN RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Structure-specific recognition protein 1
gi|70571284|dbj|BAE06715.1| transcription factor protein [Ciona intestinalis]
Length = 704
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
K+ KKDPN PKRP SA+F++L E R FK EN + +V+ + K AG +WK + P
Sbjct: 545 KRKKKDPNAPKRPQSAYFLWLNENRGRFKAENKGI-SVTELTKLAGKEWKKIDP 597
>gi|327296079|ref|XP_003232734.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS
118892]
gi|326465045|gb|EGD90498.1| non-histone chromosomal protein 6 [Trichophyton rubrum CBS
118892]
Length = 102
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K KKDPN PKR SA+ +F E R ++ENPN+T VGK G +WK++S
Sbjct: 16 EKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNIT-FGQVGKVLGERWKALS 67
>gi|326475470|gb|EGD99479.1| nucleosome binding protein [Trichophyton tonsurans CBS 112818]
Length = 102
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K KKDPN PKR SA+ +F E R ++ENPN+T VGK G +WK++S
Sbjct: 16 EKKKKDPNAPKRGLSAYMIFANEQRAAVREENPNIT-FGQVGKVLGERWKALS 67
>gi|47227840|emb|CAG09003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 199
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
KK KDPN PKRPPSAFF+F EFR K ENP +T + K G W S
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCAEFRPKVKSENPGLT-IGDTAKKLGEMWNS 134
>gi|392333067|ref|XP_003752781.1| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
gi|392353165|ref|XP_001067503.2| PREDICTED: high mobility group protein B3-like [Rattus norvegicus]
Length = 212
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KKDPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 99 KKKKDPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IEDVVKKLGEMWNNLS 149
>gi|336373128|gb|EGO01466.1| hypothetical protein SERLA73DRAFT_131740 [Serpula lacrymans var.
lacrymans S7.3]
Length = 165
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 14 QEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTF 73
QE L K+GKRKA + D G + KR K K DPN PKRP SA+ +F E R
Sbjct: 59 QELLGDAPIKIGKRKA---RDDDGDGTKRKRVTKPK-DPNAPKRPASAYILFQNEVRAKL 114
Query: 74 KKENPNVTAVSAVGKAAGGKWKSMS 98
K++NP + S + G +W SMS
Sbjct: 115 KEQNPELPQ-SELLSLIGRRWTSMS 138
>gi|28279681|gb|AAH45917.1| High-mobility group box 1 [Danio rerio]
gi|182891806|gb|AAI65307.1| Hmgb1 protein [Danio rerio]
Length = 205
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F EFR K+E P ++ + V K G W +S
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGLS-IGDVAKRLGEMWNKIS 136
>gi|42476233|ref|NP_955849.2| high mobility group protein B1 [Danio rerio]
gi|37681827|gb|AAQ97791.1| high-mobility group box 1 [Danio rerio]
gi|45595607|gb|AAH67193.1| High-mobility group box 1 [Danio rerio]
Length = 205
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F EFR K+E P ++ + V K G W +S
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGLS-IGDVAKRLGEMWNKIS 136
>gi|395844161|ref|XP_003794831.1| PREDICTED: uncharacterized protein LOC100953571 [Otolemur
garnettii]
Length = 357
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PK PPS FF+F EFR K NP ++ + V K G W S+S
Sbjct: 253 KKDPNAPKTPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNSLS 301
Score = 34.3 bits (77), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGK 93
D G + + K AK+DP KPK A+ F++ R+ KK+NP V ++ K +
Sbjct: 156 DRGPEGENNSVKIAKRDPKKPKGKMPAYAFFVQTCREEHKKKNPEVPVNLAEFSKKCSER 215
Query: 94 WKSMS 98
WK+ S
Sbjct: 216 WKATS 220
>gi|85000895|ref|XP_955166.1| high-mobility-group (HMG) protein [Theileria annulata strain
Ankara]
gi|65303312|emb|CAI75690.1| high-mobility-group (HMG) protein, putative [Theileria annulata]
Length = 94
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKS 96
+K GK+ K+AKKDPN PKR S++ F +E R ++NP++ V+AVGK G W S
Sbjct: 6 AKSAGKKSKRAKKDPNAPKRALSSYMFFAKEKRAELVRDNPDLARDVAAVGKLVGAAWNS 65
Query: 97 M 97
+
Sbjct: 66 L 66
>gi|347921933|ref|NP_990626.2| high mobility group protein B3 [Gallus gallus]
Length = 217
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFF+F EFR K NP ++ + V K G W ++S
Sbjct: 104 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 150
>gi|403217000|emb|CCK71495.1| hypothetical protein KNAG_0H00800 [Kazachstania naganishii CBS
8797]
Length = 118
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + KKDPN PKR SA+ F E R K ENPN T +GK G KWK+MS
Sbjct: 33 KRVTRKKKDPNAPKRSMSAYMFFANENRDIVKSENPNAT-FGQLGKLLGEKWKNMS 87
>gi|339715208|ref|NP_001092721.2| high-mobility group box 1b [Danio rerio]
Length = 197
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
KK KDPN PKRPPSAFF+F ++R K ENP ++ + + K G W S S V
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCGDYRPKIKGENPGLS-IGDIAKKLGEMWNSSSAEV 139
>gi|388582419|gb|EIM22724.1| hypothetical protein WALSEDRAFT_53977 [Wallemia sebi CBS 633.66]
Length = 137
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 33 KLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGG 92
K D+ + K+ K KKD N PKR SA+ +E R KKENPN++ VGK G
Sbjct: 3 KADTKPRANTKKAAKPKKDENAPKRALSAYMYMSQEHRAEVKKENPNIS-FGEVGKVLGA 61
Query: 93 KWKSMS 98
KWK MS
Sbjct: 62 KWKEMS 67
>gi|296470699|tpg|DAA12814.1| TPA: high mobility group box 3-like [Bos taurus]
Length = 197
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D GS + GK KDPN PKRPPS FF+F EF K NP ++ + V K G W
Sbjct: 76 DYGSAKGGK------KDPNAPKRPPSGFFLFFSEFCSEIKSTNPGIS-IGDVAKKLGEMW 128
Query: 95 KSMS 98
++S
Sbjct: 129 NNLS 132
>gi|148707462|gb|EDL39409.1| mCG8212 [Mus musculus]
Length = 145
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKRPPS FF+F EF K NP ++ + V K G WK++S
Sbjct: 35 KKDPNAPKRPPSGFFLFCSEFHPKIKFTNPGIS-IGDVAKKLGEMWKNLS 83
>gi|148229870|ref|NP_001080585.1| high mobility group box 3 [Xenopus laevis]
gi|27882654|gb|AAH44009.1| Hmgb3-prov protein [Xenopus laevis]
Length = 202
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP +T + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIT-IGDVAKKLGEMWNNLS 135
>gi|322517988|gb|ADX06860.1| high mobility group protein B1 [Sciaenops ocellatus]
Length = 206
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F EFR K E P +T + V K G W
Sbjct: 85 KKKYKDPNAPKRPPSAFFIFCSEFRPKVKGEAPGLT-IGEVAKRLGEMW 132
>gi|320091041|gb|ADW08807.1| high mobility group box X [Lethenteron camtschaticum]
Length = 225
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
++ KKDPN PKRPPSAFF+F +FR K +NP + + + K G W
Sbjct: 90 QRKKKDPNAPKRPPSAFFIFCADFRPQIKADNPGMV-IGTIAKRLGEMW 137
>gi|729728|sp|P40618.2|HMGB3_CHICK RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|63494|emb|CAA45065.1| HMG2a [Gallus gallus]
Length = 202
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSAFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|47190944|emb|CAF93003.1| unnamed protein product [Tetraodon nigroviridis]
Length = 204
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GKR +K +KDPN PKRPPSAFFVF E+R + K++ P ++ + K G W +S
Sbjct: 88 GKRGRK-RKDPNAPKRPPSAFFVFCSEYRPSVKQQFPGLS-IGDCAKKLGEMWSKLS 142
>gi|328856362|gb|EGG05484.1| hypothetical protein MELLADRAFT_31192 [Melampsora larici-populina
98AG31]
Length = 82
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
KR K +KDPN PKRP SA+ F +++R+ K ENP V+ +G+ G KWKS+
Sbjct: 1 KRRVKREKDPNAPKRPLSAYMFFSQDWRERIKTENPEVS-FGEIGRLLGLKWKSL 54
>gi|145536343|ref|XP_001453899.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421632|emb|CAK86502.1| unnamed protein product [Paramecium tetraurelia]
Length = 236
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
EKK ++DPN PK+P +AFF+F +++R+ + NP + ++ + + AG KW SMS
Sbjct: 42 EKKKERDPNAPKKPLTAFFLFNQKYRQKVVERNPEI-KLTQISQMAGNKWTSMS 94
>gi|170097113|ref|XP_001879776.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645179|gb|EDR09427.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 114
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 47/87 (54%), Gaps = 14/87 (16%)
Query: 12 VSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRK 71
+ +EA KP KRKAA K D + R+GK KDPNKPKR SA+ F +++R
Sbjct: 1 MPKEATKP------KRKAAE-KADKATSRKGK------KDPNKPKRALSAYMFFSQDWRD 47
Query: 72 TFKKENPNVTAVSAVGKAAGGKWKSMS 98
K ENP+ VGK G KWK +
Sbjct: 48 RIKAENPDA-GFGEVGKLLGAKWKELD 73
>gi|115459940|ref|NP_001053570.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|38345400|emb|CAE03091.2| OSJNBa0017B10.6 [Oryza sativa Japonica Group]
gi|113565141|dbj|BAF15484.1| Os04g0564600 [Oryza sativa Japonica Group]
gi|116309704|emb|CAH66751.1| H0409D10.9 [Oryza sativa Indica Group]
gi|116309707|emb|CAH66753.1| OSIGBa0158F05.2 [Oryza sativa Indica Group]
gi|125549359|gb|EAY95181.1| hypothetical protein OsI_16998 [Oryza sativa Indica Group]
gi|149391231|gb|ABR25633.1| hmg1/2-like protein [Oryza sativa Indica Group]
gi|213959192|gb|ACJ54930.1| HMG protein [Oryza sativa Japonica Group]
gi|215767864|dbj|BAH00093.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222629376|gb|EEE61508.1| hypothetical protein OsJ_15798 [Oryza sativa Japonica Group]
gi|323388963|gb|ADX60286.1| HMG transcription factor [Oryza sativa Japonica Group]
Length = 132
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 32 AKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
A D+ K GKR+K KPKR + FF FL EFR + +++PN V+AV KAAG
Sbjct: 4 ADADAEFKAAGKRKKAGG--AGKPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAG 61
Query: 92 GKWKSMS 98
KW++MS
Sbjct: 62 EKWRAMS 68
>gi|62362190|gb|AAX81532.1| amphiHMG1/2-like protein [Adineta ricciae]
Length = 142
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
KKA KDPN PKRP SAFF+F ++ R KK++P+++ V + K G +WK +S V
Sbjct: 9 KKASKDPNAPKRPLSAFFLFSQDERPDIKKKSPSLS-VGDISKEIGSRWKKVSDDV 63
>gi|145480005|ref|XP_001426025.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393097|emb|CAK58627.1| unnamed protein product [Paramecium tetraurelia]
Length = 223
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA--------VSAVGKAAGGKWKS 96
EKK ++DPN PKRP +AFF+F +++R+ + NP + + + + AG KW+S
Sbjct: 23 EKKKERDPNAPKRPLTAFFLFSQKYREKVLERNPGIDLSDYQLEVKLIQISQMAGQKWQS 82
Query: 97 MS 98
MS
Sbjct: 83 MS 84
>gi|367020358|ref|XP_003659464.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila
ATCC 42464]
gi|347006731|gb|AEO54219.1| hypothetical protein MYCTH_2296547 [Myceliophthora thermophila
ATCC 42464]
Length = 101
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 40 RQGKREKK-AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R GK EKK +KKDPN PKR SA+ F E R+ ++ENP V+ VGK G +WK++S
Sbjct: 8 RSGKAEKKRSKKDPNAPKRGLSAYMFFANEQRENVREENPGVS-FGQVGKILGERWKALS 66
>gi|366988547|ref|XP_003674040.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS
4309]
gi|342299903|emb|CCC67659.1| hypothetical protein NCAS_0A11010 [Naumovozyma castellii CBS
4309]
Length = 101
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+R ++ KKDPN PKR SA+ F E R K ENPN+T VGK G KWK+++
Sbjct: 8 RRTQRRKKDPNAPKRGLSAYMFFANENRDIVKAENPNIT-FGQVGKVLGEKWKALT 62
>gi|213959194|gb|ACJ54931.1| HMG protein [Oryza sativa Japonica Group]
Length = 131
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KPKR + FF FL EFR + +++PN V+AV KAAG KW++MS
Sbjct: 24 KPKRGLTPFFAFLAEFRPQYMEKHPNTKGVAAVTKAAGEKWRAMS 68
>gi|74628491|sp|Q7S045.1|NHP6_NEUCR RecName: Full=Non-histone chromosomal protein 6
gi|336464617|gb|EGO52857.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2508]
gi|350296712|gb|EGZ77689.1| Non-histone chromosomal protein 6 [Neurospora tetrasperma FGSC
2509]
Length = 103
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 38 SKRQGKREKK-AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
SK GK EK+ AKKDPN PKR SA+ F E R+ ++ENP V+ VGK G +WK+
Sbjct: 8 SKTTGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGVS-FGQVGKILGERWKA 66
Query: 97 MS 98
+S
Sbjct: 67 LS 68
>gi|331220978|ref|XP_003323164.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309302154|gb|EFP78745.1| high mobility group protein B1 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 106
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 33 KLDS-GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
KLD G+ + KR KK +KDPN PKRP SA+ F +++R+ K ENP+V+ +G+ G
Sbjct: 14 KLDCDGNPVKTKRVKK-EKDPNAPKRPLSAYMYFSQDWRERIKTENPDVS-FGEIGRLLG 71
Query: 92 GKWKSMS 98
KWK +S
Sbjct: 72 LKWKGLS 78
>gi|410930542|ref|XP_003978657.1| PREDICTED: high mobility group protein B2-like [Takifugu rubripes]
Length = 201
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GKR +K +KDPN PKRPPSAFFVF E+R + K++ P ++ + K G W ++
Sbjct: 85 GKRGRK-RKDPNAPKRPPSAFFVFCSEYRPSVKQQYPGLS-IGDCAKKLGEMWSKLT 139
>gi|444323521|ref|XP_004182401.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS
6284]
gi|387515448|emb|CCH62882.1| hypothetical protein TBLA_0I02240 [Tetrapisispora blattae CBS
6284]
Length = 94
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + KKDPN PKR SA+ F E R + ENP+VT VGK G +WK++S
Sbjct: 9 KRSTRRKKDPNAPKRALSAYMFFANETRDIVRSENPDVT-FGQVGKILGERWKALS 63
>gi|225708606|gb|ACO10149.1| High mobility group protein B2 [Osmerus mordax]
Length = 216
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
+G + K KKDPN PKRPPSAFFVF + R K E+P ++ + + K G W +P
Sbjct: 82 KGTKVGKRKKDPNAPKRPPSAFFVFCSDHRARIKGEHPGIS-IGDIAKKLGELWSKQTP 139
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMS 98
KDPNKP+ S++ F++ R+ KK++P + S K +WK+MS
Sbjct: 4 KDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMS 53
>gi|164422576|ref|XP_957906.2| hypothetical protein NCU09995 [Neurospora crassa OR74A]
gi|157069727|gb|EAA28670.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 95
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 38 SKRQGKREKK-AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
SK GK EK+ AKKDPN PKR SA+ F E R+ ++ENP V+ VGK G +WK+
Sbjct: 8 SKTTGKVEKRRAKKDPNAPKRGLSAYMFFANEQRENVREENPGVS-FGQVGKILGERWKA 66
Query: 97 MS 98
+S
Sbjct: 67 LS 68
>gi|148223673|ref|NP_001079576.1| HMG-X protein [Xenopus laevis]
gi|639691|dbj|BAA06440.1| HMG-X protein [Xenopus laevis]
Length = 212
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
+G+ + K KKDPN PKRPPSAFF+F E R K E P ++ + K G W +P
Sbjct: 82 KGETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETPGLS-IGDTAKKLGELWAEQTP 139
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMS 98
DPNKP+ S++ F++ R+ KK++P+ + S K +WKSMS
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSDFSKKCSERWKSMS 53
>gi|225195617|gb|ACN82086.1| high-mobility group box 1 [Carassius auratus]
gi|225195619|gb|ACN82087.1| high-mobility group box 1 [Megalobrama amblycephala]
gi|225195623|gb|ACN82089.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F EFR K+E P ++ + V K G W S
Sbjct: 74 KKRFKDPNAPKRPPSAFFIFCSEFRPKVKEETPGLS-IGDVAKKLGEMWNKTS 125
>gi|431920081|gb|ELK18129.1| High mobility group protein B3 [Pteropus alecto]
Length = 255
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 141 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 187
>gi|71012570|ref|XP_758511.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
gi|46098169|gb|EAK83402.1| hypothetical protein UM02364.1 [Ustilago maydis 521]
Length = 125
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 22 RKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT 81
R + K A K S + Q KR KAKKDP+ PKRP SA+ F ++ R+ K NP
Sbjct: 22 RAIVKMAKADTKTKSSTSTQ-KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPEA- 79
Query: 82 AVSAVGKAAGGKWKSMSPA 100
VG+ G KWK MS A
Sbjct: 80 GFGEVGRLLGAKWKEMSEA 98
>gi|339234763|ref|XP_003378936.1| thymus high mobility group box protein TOX [Trichinella spiralis]
gi|316978470|gb|EFV61455.1| thymus high mobility group box protein TOX [Trichinella spiralis]
Length = 328
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 16 ALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKK 75
L N + + + T+K+ R KR + +KDPN+P++P SA+ +F + + T K
Sbjct: 144 GLLSNHKNLTYENSPTSKMTVVKSRTPKRRQNKRKDPNEPQKPVSAYALFFRDTQATIKG 203
Query: 76 ENPNVTAVSAVGKAAGGKWKSMS 98
+NPN T V K W +++
Sbjct: 204 QNPNAT-FGEVSKIVAAMWDNLA 225
>gi|27881711|gb|AAH44715.1| MGC52578 protein [Xenopus laevis]
Length = 212
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
+G+ + K KKDPN PKRPPSAFF+F E R K E P ++ + K G W +P
Sbjct: 82 KGETKGKRKKDPNAPKRPPSAFFIFCSEHRPQIKSETPGLS-IGDTAKKLGELWAEQTP 139
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMS 98
DPNKP+ S++ F++ R+ KK++P+ + S K +WKSMS
Sbjct: 5 DPNKPRGKMSSYAYFVQTCREEHKKKHPDTSVNFSEFSKKCSERWKSMS 53
>gi|427788863|gb|JAA59883.1| Putative nucleosome-binding factor spn pob3 subunit [Rhipicephalus
pulchellus]
Length = 734
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R K ++D NKPKRPPSA+F++L E R+ KK+NP +++ V K AG WK ++
Sbjct: 550 RRPKKERDANKPKRPPSAYFLWLAENREKIKKDNPGF-SITDVTKRAGELWKEVT 603
>gi|183212219|gb|ACC54772.1| high mobility group box 3 [Xenopus borealis]
Length = 152
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PKRPPS FF+F EFR K NP +T + V K G W ++
Sbjct: 97 DPNAPKRPPSGFFLFCSEFRPNIKSTNPGIT-IGDVAKKLGEMWNNL 142
>gi|49258306|pdb|1J3C|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 79
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKRPPSAFF+F E+R K E+P ++ + K G W S
Sbjct: 3 KKDPNAPKRPPSAFFLFCSEYRPKIKSEHPGLS-IGDTAKKLGEMWSEQS 51
>gi|168056739|ref|XP_001780376.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668218|gb|EDQ54830.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 207
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRP S F VF+E FRKT+K NP V+A KA G KWK M+
Sbjct: 107 DPNAPKRPASGFLVFMESFRKTYKDANPESKGVAAAAKAGGEKWKQMT 154
>gi|225195621|gb|ACN82088.1| high-mobility group box 1 [Carassius auratus x Megalobrama
amblycephala]
Length = 193
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F EFR K+E P ++ + V K G W S
Sbjct: 74 KKRFKDPNAPKRPPSAFFIFCAEFRPKVKEETPGLS-IGDVAKKLGEMWNKTS 125
>gi|410932269|ref|XP_003979516.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
gi|410933007|ref|XP_003979884.1| PREDICTED: high mobility group-T protein-like [Takifugu rubripes]
Length = 209
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
DPN PKRPPSAFF+F EFR K E+P +T + V K G W
Sbjct: 95 DPNAPKRPPSAFFIFCSEFRPKVKGEHPGLT-IGEVAKKLGELW 137
>gi|119187239|ref|XP_001244226.1| hypothetical protein CIMG_03667 [Coccidioides immitis RS]
gi|303317166|ref|XP_003068585.1| Nonhistone chromosomal protein 6B, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240108266|gb|EER26440.1| Nonhistone chromosomal protein 6B, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320038503|gb|EFW20438.1| nucleosome binding protein Nhp6a [Coccidioides posadasii str.
Silveira]
gi|392870942|gb|EAS32789.2| non-histone chromosomal protein 6 [Coccidioides immitis RS]
Length = 102
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 38 SKRQ--GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
S RQ G+R +K KKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK
Sbjct: 6 STRQTKGRRAEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKLLGERWK 64
Query: 96 SMS 98
++S
Sbjct: 65 ALS 67
>gi|395857208|ref|XP_003800997.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 225
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ V V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-VGDVAKKLGEMWNNLS 135
>gi|156837652|ref|XP_001642846.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113421|gb|EDO14988.1| hypothetical protein Kpol_376p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
KR + KKDPN PKR SA+ F E R + ENP+V+ VG+ G KWK+++P
Sbjct: 9 KRTTRRKKDPNAPKRALSAYMFFANETRDIVRAENPDVS-FGQVGRILGEKWKALTP 64
>gi|301763549|ref|XP_002917185.1| PREDICTED: high mobility group protein B4-like [Ailuropoda
melanoleuca]
Length = 193
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GK++K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 64 ALAKLDKARYQEEMMNYVGKKKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 123
Query: 84 SAVGKAAGGKWKSMSPA 100
V KA+G W + + A
Sbjct: 124 Q-VAKASGKMWSATTDA 139
>gi|281349442|gb|EFB25026.1| hypothetical protein PANDA_005395 [Ailuropoda melanoleuca]
Length = 181
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GK++K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYVGKKKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKWKSMSPA 100
V KA+G W + + A
Sbjct: 122 Q-VAKASGKMWSATTDA 137
>gi|444707322|gb|ELW48604.1| High mobility group protein B4 [Tupaia chinensis]
Length = 189
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ G+R K+ K+DP P+RPPS+F +F ++ K+ENP+ T V
Sbjct: 64 ALAKLDKARYQEEMMNYVGRRRKRRKRDPQAPRRPPSSFILFCQDHYAQLKRENPSWTVV 123
Query: 84 SAVGKAAGGKWKSMS 98
V KA+G W M+
Sbjct: 124 Q-VAKASGKMWTVMT 137
>gi|148694630|gb|EDL26577.1| mCG10155, isoform CRA_d [Mus musculus]
Length = 220
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 155
>gi|449269673|gb|EMC80424.1| High mobility group protein B1 [Columba livia]
Length = 209
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F EFR K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|426258242|ref|XP_004022724.1| PREDICTED: high mobility group protein B3 [Ovis aries]
Length = 248
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 160 DPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLS 206
>gi|346986304|ref|NP_001069753.2| high mobility group protein B3 isoform 1 [Bos taurus]
Length = 274
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 163 DPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLS 209
>gi|410910282|ref|XP_003968619.1| PREDICTED: high mobility group-T protein-like isoform 1 [Takifugu
rubripes]
Length = 196
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
KK KDPN PKRPPSAFF+F E R K ENP +T + K G W S
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCAELRPKVKSENPGLT-IGDTAKKLGEMWNS 134
>gi|81673590|gb|AAI09794.1| High-mobility group box 3 [Bos taurus]
gi|296471156|tpg|DAA13271.1| TPA: high mobility group protein B3 isoform 1 [Bos taurus]
Length = 236
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLS 171
>gi|392575401|gb|EIW68534.1| hypothetical protein TREMEDRAFT_32029 [Tremella mesenterica DSM
1558]
Length = 116
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KR K KKDPN PKR SA+ F++++R K ++P+V+ GK G KWK+MS A
Sbjct: 19 KRAPKEKKDPNAPKRGLSAYMFFVQDYRPKIKNDHPDVS-FGETGKLLGEKWKAMSAA 75
>gi|387016392|gb|AFJ50315.1| High mobility group protein B1 [Crotalus adamanteus]
Length = 215
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + S
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTS 137
>gi|148694627|gb|EDL26574.1| mCG10155, isoform CRA_b [Mus musculus]
Length = 206
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 95 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 141
>gi|392354293|ref|XP_003751730.1| PREDICTED: high mobility group protein B3-like isoform 1 [Rattus
norvegicus]
Length = 241
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 130 DPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLS 176
>gi|444510285|gb|ELV09567.1| High mobility group protein B3 [Tupaia chinensis]
Length = 197
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 77 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 123
>gi|395821450|ref|XP_003784053.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 221
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNVPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGEVAKKLGEMW 133
>gi|348551110|ref|XP_003461373.1| PREDICTED: high mobility group protein B3-like [Cavia porcellus]
Length = 202
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|354495940|ref|XP_003510086.1| PREDICTED: high mobility group protein B3-like [Cricetulus griseus]
gi|344249016|gb|EGW05120.1| High mobility group protein B3 [Cricetulus griseus]
Length = 200
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|229367676|gb|ACQ58818.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
++KK KDPN PKRPPSAFF+F +FR K E+P +T + K G W S S
Sbjct: 83 QKKKRFKDPNAPKRPPSAFFLFCGDFRPKVKSEHPGLT-IGDTAKKLGEMWNSSS 136
>gi|82658290|ref|NP_001032501.1| high mobility group protein B2 [Danio rerio]
gi|81294190|gb|AAI07992.1| Zgc:123215 [Danio rerio]
Length = 213
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKRPPSAFFVF + R K +NP ++ + + K G W +SP
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKVKGDNPGIS-IGDIAKKLGEMWSKLSP 138
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMS 98
KDPNKP+ S++ F++ R+ KK+NP + S K +W++MS
Sbjct: 3 KDPNKPRGKTSSYAFFVQTCREEHKKKNPGTSVNFSEFSKKCSERWRTMS 52
>gi|118344422|ref|NP_001072036.1| transcription factor protein [Ciona intestinalis]
gi|70570508|dbj|BAE06614.1| transcription factor protein [Ciona intestinalis]
Length = 447
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFK-KENPNVTAVSAVGKAAGGKWKSMSPA 100
+K +DPN+PKRPPSA+F+FL +FRK + K +P + K AG W S+S A
Sbjct: 258 EKKPRDPNRPKRPPSAYFLFLADFRKNYPGKSDP----AKEITKKAGEAWNSLSDA 309
>gi|311277128|ref|XP_003135516.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 202
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|291410190|ref|XP_002721383.1| PREDICTED: high-mobility group box 3 [Oryctolagus cuniculus]
Length = 215
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 104 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 150
>gi|193787044|dbj|BAG51867.1| unnamed protein product [Homo sapiens]
Length = 176
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 47 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 94
>gi|395850201|ref|XP_003797684.1| PREDICTED: high mobility group protein B1 [Otolemur garnettii]
Length = 289
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|5815432|gb|AAD52670.1|AF178849_1 high mobility group protein HMG1 [Gallus gallus]
Length = 214
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F EFR K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|380083124|gb|AFD33645.1| high mobility group box 1, partial [Gallus gallus]
Length = 185
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F EFR K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|355694844|gb|AER99804.1| high-mobility group box 3 [Mustela putorius furo]
Length = 197
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 91 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 137
>gi|224043266|ref|XP_002194652.1| PREDICTED: high mobility group protein B1 [Taeniopygia guttata]
Length = 215
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F EFR K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|397482786|ref|XP_003812597.1| PREDICTED: high mobility group protein B4 [Pan paniscus]
Length = 177
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKWKSMS 98
V KA G W +++
Sbjct: 122 Q-VAKATGKMWSTVT 135
>gi|45382473|ref|NP_990233.1| high mobility group protein B1 [Gallus gallus]
gi|326914268|ref|XP_003203448.1| PREDICTED: high mobility group protein B1-like [Meleagris
gallopavo]
gi|4140289|emb|CAA76978.1| high mobility group 1 protein [Gallus gallus]
gi|60098903|emb|CAH65282.1| hypothetical protein RCJMB04_15a21 [Gallus gallus]
Length = 215
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F EFR K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|440910877|gb|ELR60625.1| High mobility group protein B3 [Bos grunniens mutus]
Length = 236
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 125 DPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLS 171
>gi|6680231|ref|NP_032279.1| high mobility group protein B3 [Mus musculus]
gi|20138160|sp|O54879.3|HMGB3_MOUSE RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|2738989|gb|AAC16925.1| high mobility group protein homolog HMG4 [Mus musculus]
gi|15030059|gb|AAH11276.1| Hmgb3 protein [Mus musculus]
gi|26327985|dbj|BAC27733.1| unnamed protein product [Mus musculus]
gi|54035419|gb|AAH83352.1| High mobility group box 3 [Mus musculus]
gi|74146994|dbj|BAE27437.1| unnamed protein product [Mus musculus]
gi|74186760|dbj|BAE34835.1| unnamed protein product [Mus musculus]
gi|74192972|dbj|BAE34988.1| unnamed protein product [Mus musculus]
gi|74194280|dbj|BAE24671.1| unnamed protein product [Mus musculus]
gi|148694626|gb|EDL26573.1| mCG10155, isoform CRA_a [Mus musculus]
gi|148694628|gb|EDL26575.1| mCG10155, isoform CRA_a [Mus musculus]
gi|187957408|gb|AAI58038.1| High mobility group box 3 [Mus musculus]
Length = 200
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|410989557|ref|XP_004001438.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Felis catus]
Length = 201
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|358410870|ref|XP_003581858.1| PREDICTED: high mobility group protein B3-like [Bos taurus]
Length = 197
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLS 135
>gi|229365968|gb|ACQ57964.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 197
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
++KK KDPN PKRPPSAFF+F +FR K E+P +T + K G W S S
Sbjct: 83 QKKKRFKDPNAPKRPPSAFFLFCGDFRPKVKSEHPGLT-IGDTAKKLGEMWNSSS 136
>gi|57112857|ref|XP_538194.1| PREDICTED: high mobility group protein B3 [Canis lupus familiaris]
gi|338729649|ref|XP_001505130.3| PREDICTED: high mobility group protein B3-like isoform 1 [Equus
caballus]
Length = 201
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|417396975|gb|JAA45521.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 200
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|332808386|ref|XP_513298.3| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4 [Pan
troglodytes]
Length = 186
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKWKSMS 98
V KA G W +++
Sbjct: 122 Q-VAKATGKMWSTVT 135
>gi|301778413|ref|XP_002924621.1| PREDICTED: high mobility group protein B3-like [Ailuropoda
melanoleuca]
Length = 201
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|344299188|ref|XP_003421269.1| PREDICTED: high mobility group protein B3-like [Loxodonta africana]
Length = 200
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|359062996|ref|XP_003585778.1| PREDICTED: high mobility group protein B3-like, partial [Bos
taurus]
Length = 186
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLS 135
>gi|350588033|ref|XP_003482539.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
gi|350588037|ref|XP_003482541.1| PREDICTED: high mobility group protein B3-like [Sus scrofa]
Length = 196
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|253756810|gb|ACT35162.1| HmgB3y, partial [Monodelphis domestica]
Length = 193
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 86 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 132
>gi|164450473|ref|NP_001106728.1| high mobility group protein B3 isoform 2 [Bos taurus]
gi|146324910|sp|Q32L31.2|HMGB3_BOVIN RecName: Full=High mobility group protein B3
gi|296471157|tpg|DAA13272.1| TPA: high mobility group protein B3 isoform 2 [Bos taurus]
gi|399227521|gb|AFP36466.1| HMGB3 transcript variant 1/2 [Bos taurus]
gi|399227522|gb|AFP36467.1| HMGB3 transcript variant 3 [Bos taurus]
Length = 200
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLS 135
>gi|302684321|ref|XP_003031841.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune
H4-8]
gi|300105534|gb|EFI96938.1| hypothetical protein SCHCODRAFT_76744 [Schizophyllum commune
H4-8]
Length = 114
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 42/73 (57%), Gaps = 9/73 (12%)
Query: 26 KRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSA 85
+RKAAT + K +KAKKDPN PKR SA+ F +++R+ K ENP+ +
Sbjct: 10 RRKAAT--------KSEKTPRKAKKDPNAPKRALSAYMFFSQDWRERVKAENPDAS-FGE 60
Query: 86 VGKAAGGKWKSMS 98
+GK G KWK M
Sbjct: 61 LGKILGAKWKEMD 73
>gi|90103305|gb|ABD85497.1| high mobility group box 1-like [Ictalurus punctatus]
Length = 182
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+R K+E P ++ + V K G W S
Sbjct: 66 KKRFKDPNAPKRPPSAFFIFCAEYRPKVKEETPGLS-IGDVAKKLGEMWNKTS 117
>gi|148682307|gb|EDL14254.1| mCG114640 [Mus musculus]
Length = 200
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|57232750|ref|NP_660206.2| high mobility group protein B4 [Homo sapiens]
gi|387912835|sp|Q8WW32.2|HMGB4_HUMAN RecName: Full=High mobility group protein B4
gi|189065201|dbj|BAG34924.1| unnamed protein product [Homo sapiens]
gi|208968483|dbj|BAG74080.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP +P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQEPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKWKS 96
V KA G W +
Sbjct: 122 Q-VAKATGKMWST 133
>gi|449269345|gb|EMC80131.1| High mobility group protein B3 [Columba livia]
Length = 202
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|300677966|gb|ADK27290.1| high-mobility-group B1a [Gekko japonicus]
Length = 215
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F EFR K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|110287688|sp|Q4PBZ9.2|NHP6_USTMA RecName: Full=Non-histone chromosomal protein 6
Length = 99
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KR KAKKDP+ PKRP SA+ F ++ R+ K NP VG+ G KWK MS A
Sbjct: 16 KRTTKAKKDPDAPKRPLSAYMFFSQDQRERVKNANPEA-GFGEVGRLLGAKWKEMSEA 72
>gi|281338637|gb|EFB14221.1| hypothetical protein PANDA_014002 [Ailuropoda melanoleuca]
Length = 168
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|67484144|ref|XP_657292.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|56474548|gb|EAL51913.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
Length = 114
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
PN+PKRPP+ +F++L E R + K+E+P++ + + K A +WK++
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDIR-FTEISKVASEQWKAL 70
>gi|224098124|ref|XP_002198052.1| PREDICTED: high mobility group protein B3 isoform 1 [Taeniopygia
guttata]
gi|326924638|ref|XP_003208532.1| PREDICTED: high mobility group protein B3-like [Meleagris
gallopavo]
gi|449498655|ref|XP_004177286.1| PREDICTED: high mobility group protein B3 isoform 2 [Taeniopygia
guttata]
Length = 202
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|547652|sp|P36194.2|HMGB1_CHICK RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|391636|dbj|BAA03260.1| HMG-1 [Gallus gallus]
Length = 201
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 88 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 134
>gi|167536391|ref|XP_001749867.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771582|gb|EDQ85246.1| predicted protein [Monosiga brevicollis MX1]
Length = 197
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%), Gaps = 1/57 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
R+K+AKKDPNKPK SA+ F ++ R F K+NP+ ++ V K G W+ MS A
Sbjct: 27 RQKRAKKDPNKPKNAQSAYMFFSQKVRPQFSKDNPD-KKMTDVSKLIGAAWREMSDA 82
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
GKR K+ +KDP+ PK+P +A+F++ + R + +N N T V+ + K G +WK +S AV
Sbjct: 114 GKRGKR-RKDPDAPKKPLTAYFLYAADRRAALRAQNRNAT-VADIAKIIGAEWKDLSDAV 171
>gi|290560936|ref|NP_001166812.1| high mobility group box 3 [Rattus norvegicus]
gi|392354295|ref|XP_003751731.1| PREDICTED: high mobility group protein B3-like isoform 2 [Rattus
norvegicus]
gi|149027076|gb|EDL82825.1| rCG56793 [Rattus norvegicus]
gi|165971283|gb|AAI58740.1| Hmgb3 protein [Rattus norvegicus]
Length = 200
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSANPGIS-IGDVAKKLGEMWNNLS 135
>gi|395545985|ref|XP_003774876.1| PREDICTED: high mobility group protein B3-like [Sarcophilus
harrisii]
Length = 201
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|149410917|ref|XP_001509199.1| PREDICTED: high mobility group protein B3-like isoform 1
[Ornithorhynchus anatinus]
gi|345306624|ref|XP_003428488.1| PREDICTED: high mobility group protein B3-like isoform 2
[Ornithorhynchus anatinus]
Length = 201
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|254826706|ref|NP_001157151.1| high mobility group protein B3 [Monodelphis domestica]
gi|253756818|gb|ACT35166.1| HmgB3x [Monodelphis domestica]
Length = 201
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|56384901|gb|AAV85889.1| high mobility group 1 protein [Pelodiscus sinensis]
Length = 202
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|315051466|ref|XP_003175107.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS
118893]
gi|311340422|gb|EFQ99624.1| non-histone chromosomal protein 6 [Arthroderma gypseum CBS
118893]
Length = 102
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K KKDPN PKR SA+ +F E R + ++ENP++T VGK G +WK+++
Sbjct: 16 EKKKKDPNAPKRGLSAYMIFANEQRASVREENPSIT-FGQVGKVLGERWKALT 67
>gi|388511193|gb|AFK43658.1| unknown [Lotus japonicus]
Length = 92
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 28/35 (80%)
Query: 66 LEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
+ EFR FKK+NPN +V+AVGKAAG KWKSM+ A
Sbjct: 1 MSEFRTQFKKDNPNNKSVAAVGKAAGSKWKSMTDA 35
>gi|148234528|ref|NP_001080836.1| high mobility group box 1 [Xenopus laevis]
gi|32450384|gb|AAH54148.1| Hmgb1-prov protein [Xenopus laevis]
Length = 211
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F EFR K E+P T + + K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGST-IGDIAKKLGEMW 133
>gi|67475910|ref|XP_653586.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|56470556|gb|EAL48200.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica HM-1:IMSS]
gi|449703217|gb|EMD43706.1| high mobility group (HMG) box domain containing protein
[Entamoeba histolytica KU27]
Length = 111
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
PN+PKRPP+ +F++L E R + K+E+P+ V+ + K A +WK++
Sbjct: 23 PNRPKRPPTPYFLYLNEHRASIKEEHPDA-KVTEIAKIASEQWKAL 67
>gi|118343940|ref|NP_001071792.1| transcription factor protein [Ciona intestinalis]
gi|70570753|dbj|BAE06615.1| transcription factor protein [Ciona intestinalis]
Length = 310
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFK-KENPNVTAVSAVGKAAGGKWKSMSPA 100
+K +DPN+PKRPPSA+F+FL +FRK + K +P + K AG W S+S A
Sbjct: 121 EKKPRDPNRPKRPPSAYFLFLADFRKNYPGKSDP----AKEITKKAGEAWNSLSDA 172
>gi|116206850|ref|XP_001229234.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183315|gb|EAQ90783.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 96
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 40 RQGKREKKA--KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
R GK EKK KKDPN PKR SA+ F E R ++ENP V+ VGK G +WK++
Sbjct: 8 RSGKAEKKTRQKKDPNAPKRGLSAYMFFANEQRDNVREENPGVS-FGQVGKILGERWKAL 66
Query: 98 S 98
S
Sbjct: 67 S 67
>gi|444721192|gb|ELW61941.1| High mobility group protein B1 [Tupaia chinensis]
Length = 300
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|440900657|gb|ELR51738.1| High mobility group protein B1 [Bos grunniens mutus]
Length = 224
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|225706046|gb|ACO08869.1| High mobility group-T protein [Osmerus mordax]
Length = 204
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F +FR K E P +T + V K G W
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCADFRAKVKGETPGLT-IGDVAKKLGEMW 132
>gi|226443200|ref|NP_001140081.1| High mobility group-T protein [Salmo salar]
gi|223649418|gb|ACN11467.1| High mobility group-T protein [Salmo salar]
Length = 345
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P + ++ V K G KW +++
Sbjct: 227 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGL-SIGDVAKKLGEKWNNLT 278
>gi|392337480|ref|XP_003753270.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343959|ref|XP_003748829.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|348541671|ref|XP_003458310.1| PREDICTED: high mobility group-T protein-like [Oreochromis
niloticus]
Length = 206
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
DPN PKRPPSAFF+F EFR K E+P ++ + V K G W S
Sbjct: 91 DPNAPKRPPSAFFIFCSEFRPKVKGESPGLS-IGDVAKRLGEMWNS 135
>gi|45361297|ref|NP_989226.1| high mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|38969943|gb|AAH63332.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89267209|emb|CAJ81415.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
gi|89272910|emb|CAJ82928.1| high-mobility group box 1 [Xenopus (Silurana) tropicalis]
Length = 211
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F EFR K E+P T + + K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEFRPKIKGEHPGST-IGDIAKKLGEMW 133
>gi|303304752|emb|CBD77423.1| high mobility group box 2 protein [Plecoglossus altivelis]
Length = 215
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKRPPSAFFVF + R K ENP ++ + + K G W +P
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRARIKGENPGIS-IGDIAKKLGELWSKQTP 139
Score = 35.0 bits (79), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMS 98
KDPNKP+ S++ F++ R+ KK++P + S K +WK+MS
Sbjct: 4 KDPNKPRGKTSSYAFFVQTCREEHKKKHPGTSVNFSEFSKKCSERWKTMS 53
>gi|444518140|gb|ELV11977.1| High mobility group protein B3 [Tupaia chinensis]
Length = 198
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G + G+ EK KDPN PKR PS FF+F EFR K NP ++ + V K G W
Sbjct: 77 DYGPAKGGEEEKG--KDPNAPKRRPSVFFLFCSEFRLKIKSTNPGIS-IGDVAKKLGDVW 133
Query: 95 KSMS 98
++S
Sbjct: 134 NNLS 137
>gi|400599237|gb|EJP66941.1| HMG box protein [Beauveria bassiana ARSEF 2860]
Length = 96
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+AKKDPN PKR SA+ F E R+ ++ENP V+ VGK G +WK++S
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGVS-FGQVGKILGERWKALS 68
>gi|361127235|gb|EHK99210.1| putative Non-histone chromosomal protein 6 [Glarea lozoyensis
74030]
Length = 100
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
++ KR +K KKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK++S
Sbjct: 8 KRAKRTEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKVLGERWKALS 65
>gi|118343822|ref|NP_001071733.1| transcription factor protein [Ciona intestinalis]
gi|70569841|dbj|BAE06487.1| transcription factor protein [Ciona intestinalis]
Length = 204
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKRP SAFF+F + R K ENP T V + KA G KW + SP
Sbjct: 94 DPNAPKRPQSAFFLFCADRRAPLKAENPGWT-VGEIAKALGKKWAAASP 141
>gi|432102789|gb|ELK30264.1| High mobility group protein B1 [Myotis davidii]
Length = 245
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|403300479|ref|XP_003940964.1| PREDICTED: high mobility group protein B1-like [Saimiri boliviensis
boliviensis]
Length = 215
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKLKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGKMW 133
>gi|335308835|ref|XP_003361389.1| PREDICTED: high mobility group protein B4-like [Sus scrofa]
Length = 198
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 7/75 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ G + K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 64 ALAKLDKARYQEEMRNYVGGKRKRRKRDPQAPRRPPSSFLLFCQDNYAQLKRENPNWS-V 122
Query: 84 SAVGKAAGGKWKSMS 98
+ V KA+ W + +
Sbjct: 123 AQVAKASARMWSTTT 137
>gi|412985385|emb|CCO18831.1| CG4797 [Bathycoccus prasinos]
Length = 669
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK +KDPN PKRP S + +F E R K+ENP+ + ++ V K G +WKS++
Sbjct: 571 KKKEKDPNAPKRPLSTYMIFSAEMRAKVKEENPDFS-ITDVAKELGVRWKSVT 622
>gi|432951224|ref|XP_004084757.1| PREDICTED: high mobility group protein B2-like [Oryzias latipes]
Length = 221
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFFVF + R K++NP ++ + + K G W + S
Sbjct: 114 DPNAPKRPPSAFFVFCSDHRPKIKEDNPGIS-IGDIAKKLGELWATQS 160
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMS 98
KDPNKP+ SA+ F+ R+ KK++P + + K +WK+MS
Sbjct: 26 KDPNKPRGKTSAYAYFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMS 75
>gi|426232480|ref|XP_004010250.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ V V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-VGDVAKKLGQMW 133
>gi|378727181|gb|EHY53640.1| non-histone chromosomal protein 6 [Exophiala dermatitidis
NIH/UT8656]
Length = 102
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
SK +G+ EKK KKDPN PKR SA+ F E R++ ++ENP ++ VGK G +WK++
Sbjct: 8 SKTKGRGEKK-KKDPNAPKRGLSAYMFFANEQRESVREENPGIS-FGQVGKVLGDRWKAL 65
Query: 98 S 98
+
Sbjct: 66 N 66
>gi|148673911|gb|EDL05858.1| mCG144566 [Mus musculus]
Length = 240
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + +
Sbjct: 111 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTA 162
>gi|291403518|ref|XP_002718101.1| PREDICTED: high mobility group box 3-like [Oryctolagus cuniculus]
Length = 197
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPPSRFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|444729655|gb|ELW70064.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
+G+ EKK K DPN PKRPP AFF+F E+ K+E+P+++ + V K G W
Sbjct: 82 KGETEKKFK-DPNVPKRPPLAFFLFCSEYHPKIKEEHPDLS-IGDVAKILGEMW 133
>gi|221045048|dbj|BAH14201.1| unnamed protein product [Homo sapiens]
Length = 174
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|62087576|dbj|BAD92235.1| high-mobility group box 1 variant [Homo sapiens]
Length = 176
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 88 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 135
>gi|148682766|gb|EDL14713.1| mCG116825 [Mus musculus]
Length = 162
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + +
Sbjct: 37 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTA 88
>gi|410057418|ref|XP_003954213.1| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 210
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ V V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-VGDVAKKLGEMW 133
>gi|410081503|ref|XP_003958331.1| hypothetical protein KAFR_0G01620 [Kazachstania africana CBS
2517]
gi|372464919|emb|CCF59196.1| hypothetical protein KAFR_0G01620 [Kazachstania africana CBS
2517]
Length = 95
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+K KR ++ KKDPN PKR SA+ F E R + ENP+VT +G+ G +WK++
Sbjct: 4 TKDTKKRTQRRKKDPNAPKRALSAYMFFANENRDIVRSENPDVT-FGQIGRILGERWKAL 62
Query: 98 S 98
+
Sbjct: 63 N 63
>gi|164661201|ref|XP_001731723.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
gi|159105624|gb|EDP44509.1| hypothetical protein MGL_0991 [Malassezia globosa CBS 7966]
Length = 97
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
G R KAKKDP PKRP SA+ F +++R K +V VG+ G KWK MS
Sbjct: 12 GTRRTKAKKDPAAPKRPLSAYMFFSQDWRDASKPRTLTQDSVCDVGRLLGTKWKEMS 68
>gi|443895134|dbj|GAC72480.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 99
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KR K+KKDP PKRP SA+ F ++ R+ K+ NP VG+ G KWK MS A
Sbjct: 16 KRTTKSKKDPAAPKRPLSAYMFFSQDHRERVKQANPEA-GFGDVGRLLGAKWKEMSEA 72
>gi|146218567|gb|AAI40014.1| High-mobility group box 1 [synthetic construct]
gi|146218571|gb|AAI40019.1| High-mobility group box 1 [synthetic construct]
gi|146327050|gb|AAI41845.1| High-mobility group box 1 [Homo sapiens]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|403293162|ref|XP_003937591.1| PREDICTED: high mobility group protein B4 [Saimiri boliviensis
boliviensis]
Length = 254
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 125 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 184
Query: 84 SAVGKAAGGKW 94
V KA G W
Sbjct: 185 Q-VAKATGKMW 194
>gi|426244704|ref|XP_004016160.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 203
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGQMW 133
>gi|109098276|ref|XP_001102554.1| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|148709727|gb|EDL41673.1| mCG9102 [Mus musculus]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|112491006|pdb|2GZK|A Chain A, Structure Of A Complex Of Tandem Hmg Boxes And Dna
Length = 159
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
R+G+ +KK K DPN PKRPPSAFF+F E+R K E+P ++ + V K G W +
Sbjct: 75 RKGETKKKFK-DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNN 129
>gi|301757910|ref|XP_002914802.1| PREDICTED: high mobility group protein B1-like [Ailuropoda
melanoleuca]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|332260744|ref|XP_003279440.1| PREDICTED: uncharacterized protein LOC100604184 [Nomascus
leucogenys]
Length = 414
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA---GGKWKSMS 98
K KKDPN P+RP S FF+F EFR K NP T + G A G WK+++
Sbjct: 85 KKKKDPNAPQRPLSGFFLFCSEFRPKIKSTNPGKTGIFGFGDVAKKLGEMWKNLN 139
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMS 98
AK DP KPK SA+ F++ R+ KK+NP V + K +WK++S
Sbjct: 2 AKGDPTKPKGKMSAYAFFVQTCREEHKKKNPKVPVNFAEFSKKCSERWKTIS 53
>gi|225704132|gb|ACO07912.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
++KK KDPN PKRPPSAFF+F +FR K E+P ++ + K G W S
Sbjct: 83 QKKKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGLS-IGDTAKKLGVMWNS 134
>gi|56788496|gb|AAW29969.1| unknown [Sus scrofa]
gi|56792880|gb|AAW30632.1| unknown [Sus scrofa]
Length = 193
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|18088957|gb|AAH21180.1| High-mobility group box 4 [Homo sapiens]
gi|312150396|gb|ADQ31710.1| high-mobility group box 4 [synthetic construct]
Length = 186
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKWKS 96
V KA G W +
Sbjct: 122 Q-VAKATGKMWST 133
>gi|30584163|gb|AAP36330.1| Homo sapiens high-mobility group box 1 [synthetic construct]
gi|54697182|gb|AAV38963.1| high-mobility group box 1 [synthetic construct]
gi|54697184|gb|AAV38964.1| high-mobility group box 1 [synthetic construct]
gi|61367269|gb|AAX42974.1| high-mobility group box 1 [synthetic construct]
gi|61367275|gb|AAX42975.1| high-mobility group box 1 [synthetic construct]
gi|61371572|gb|AAX43692.1| high-mobility group box 1 [synthetic construct]
Length = 216
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|417397281|gb|JAA45674.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 216
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 87 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 134
>gi|302411796|ref|XP_003003731.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|261357636|gb|EEY20064.1| nucleosome binding protein [Verticillium albo-atrum VaMs.102]
gi|346978438|gb|EGY21890.1| nucleosome binding protein [Verticillium dahliae VdLs.17]
Length = 102
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+ K+AKKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++
Sbjct: 13 KKAKRAKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKLLGERWKALN 67
>gi|242219402|ref|XP_002475481.1| predicted protein [Postia placenta Mad-698-R]
gi|220725340|gb|EED79332.1| predicted protein [Postia placenta Mad-698-R]
Length = 261
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
GKR++K KDPN PKRP S++ +F + R KKE+PN++ + A W++M
Sbjct: 67 GKRKRKPPKDPNAPKRPASSYLIFQNDVRNELKKEHPNLSNNELLSMIA-ALWQNM 121
>gi|109469394|ref|XP_001076232.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392338825|ref|XP_003753645.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 214
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|225703866|gb|ACO07779.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 194
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
++KK KDPN PKRPPSAFF+F +FR K E+P ++ + K G W S
Sbjct: 83 QKKKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGLS-IGDTAKKLGVMWNS 134
>gi|221221922|gb|ACM09622.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
++KK KDPN PKRPPSAFF+F +FR K E+P ++ + K G W S
Sbjct: 83 QKKKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGLS-IGDTAKKLGVMWNS 134
>gi|221219434|gb|ACM08378.1| High mobility group protein B1 [Salmo salar]
Length = 196
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
++KK KDPN PKRPPSAFF+F +FR K E+P ++ + K G W S
Sbjct: 83 QKKKRFKDPNAPKRPPSAFFIFCADFRAKIKSEHPGLS-IGDTAKKLGVMWNS 134
>gi|51592117|ref|NP_001004034.1| high mobility group protein B1 [Sus scrofa]
gi|123371|sp|P12682.3|HMGB1_PIG RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|164490|gb|AAA31050.1| non-histone protein HMG1 [Sus scrofa]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|426236473|ref|XP_004012193.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 201
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGQMW 133
>gi|148673204|gb|EDL05151.1| mCG5336 [Mus musculus]
Length = 216
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|149691739|ref|XP_001488130.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 212
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|334323271|ref|XP_003340370.1| PREDICTED: high mobility group protein B1-like [Monodelphis
domestica]
Length = 216
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|426328852|ref|XP_004065350.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B4
[Gorilla gorilla gorilla]
Length = 186
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKWKS 96
V KA G W +
Sbjct: 122 Q-VAKATGKMWST 133
>gi|968888|dbj|BAA09924.1| HMG-1 [Homo sapiens]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMS 98
K DP KP+R S++ F++ R+ KK++P+ + S K +WK+MS
Sbjct: 3 KGDPKKPRRKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 53
>gi|3342573|gb|AAC27651.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|395520861|ref|XP_003764541.1| PREDICTED: high mobility group protein B1 [Sarcophilus harrisii]
Length = 230
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 100 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 147
>gi|110808604|gb|ABB22048.1| HMBG4 [Homo sapiens]
gi|119627858|gb|EAX07453.1| high-mobility group box 4 [Homo sapiens]
Length = 186
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 7/73 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKWKS 96
V KA G W +
Sbjct: 122 Q-VAKATGKMWST 133
>gi|74181373|dbj|BAE29962.1| unnamed protein product [Mus musculus]
Length = 215
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|291399740|ref|XP_002716281.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 243
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|26350077|dbj|BAC38678.1| unnamed protein product [Mus musculus]
Length = 181
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|403217833|emb|CCK72326.1| hypothetical protein KNAG_0J02470 [Kazachstania naganishii CBS
8797]
Length = 92
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR+ + KKDPN PKR SA+ F E R + ENP+VT +G+ G +WK++
Sbjct: 8 KRQTRRKKDPNAPKRALSAYMFFANENRDIVRSENPDVT-FGQIGRLLGERWKALD 62
>gi|380793129|gb|AFE68440.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|380793127|gb|AFE68439.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 195
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|346324407|gb|EGX94004.1| nucleosome binding protein [Cordyceps militaris CM01]
Length = 96
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+AKKDPN PKR SA+ F E R ++ENP V+ VGK G +WK++S
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRDNVREENPGVS-FGQVGKILGERWKALS 68
>gi|119628863|gb|EAX08458.1| high-mobility group box 1, isoform CRA_b [Homo sapiens]
Length = 206
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|26341410|dbj|BAC34367.1| unnamed protein product [Mus musculus]
Length = 178
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|5764680|gb|AAC27653.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|156083745|ref|XP_001609356.1| high mobility group protein-like protein NHP1 [Babesia bovis
T2Bo]
gi|730136|sp|P40632.1|NHP1_BABBO RecName: Full=High mobility group protein homolog NHP1
gi|344189439|pdb|2LHJ|A Chain A, Nmr Structure Of The High Mobility Group Protein-Like
Protein Nhp1 From Babesia Bovis T2bo (Baboa.00841.A)
gi|155890|gb|AAA27799.1| non-histone protein [Babesia bovis]
gi|154796607|gb|EDO05788.1| high mobility group protein-like protein NHP1 [Babesia bovis]
Length = 97
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 37 GSKRQG-KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKW 94
S R G +R +KAKKDPN PKR S++ F +E R ENP + V+A+GK G W
Sbjct: 4 ASDRTGVRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAW 63
Query: 95 KSMS 98
++S
Sbjct: 64 NALS 67
>gi|3342575|gb|AAC27652.1| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|83014391|ref|XP_918585.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|354468511|ref|XP_003496696.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
gi|344237248|gb|EGV93351.1| High mobility group protein B1 [Cricetulus griseus]
Length = 220
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|332863449|ref|XP_001169802.2| PREDICTED: high mobility group protein B1-like, partial [Pan
troglodytes]
Length = 174
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|444707034|gb|ELW48343.1| High mobility group protein B1 [Tupaia chinensis]
Length = 203
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 74 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 121
>gi|431920962|gb|ELK18731.1| High mobility group protein B1 [Pteropus alecto]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|55639639|ref|XP_509611.1| PREDICTED: high mobility group protein B1 isoform 15 [Pan
troglodytes]
gi|114649261|ref|XP_001140156.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan
troglodytes]
gi|114649265|ref|XP_001140328.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan
troglodytes]
gi|114649269|ref|XP_001140491.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan
troglodytes]
gi|332841128|ref|XP_003314147.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|332841133|ref|XP_003314149.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|397513185|ref|XP_003826902.1| PREDICTED: high mobility group protein B1 isoform 1 [Pan paniscus]
gi|397513187|ref|XP_003826903.1| PREDICTED: high mobility group protein B1 isoform 2 [Pan paniscus]
gi|397513189|ref|XP_003826904.1| PREDICTED: high mobility group protein B1 isoform 3 [Pan paniscus]
gi|397513191|ref|XP_003826905.1| PREDICTED: high mobility group protein B1 isoform 4 [Pan paniscus]
gi|397513193|ref|XP_003826906.1| PREDICTED: high mobility group protein B1 isoform 5 [Pan paniscus]
gi|397513195|ref|XP_003826907.1| PREDICTED: high mobility group protein B1 isoform 6 [Pan paniscus]
gi|397513197|ref|XP_003826908.1| PREDICTED: high mobility group protein B1 isoform 7 [Pan paniscus]
gi|410047671|ref|XP_003952424.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047673|ref|XP_003952425.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047675|ref|XP_003952426.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047677|ref|XP_003952427.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047679|ref|XP_003952428.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047682|ref|XP_003952429.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047686|ref|XP_003952430.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
gi|410047688|ref|XP_003952431.1| PREDICTED: high mobility group protein B1 [Pan troglodytes]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|48145843|emb|CAG33144.1| HMGB1 [Homo sapiens]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|620098|emb|CAA56631.1| high mobility group protein [Mus musculus]
gi|71681313|gb|AAI00313.1| High mobility group box 1 [Mus musculus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|4504425|ref|NP_002119.1| high mobility group protein B1 [Homo sapiens]
gi|50950133|ref|NP_001002937.1| high mobility group protein B1 [Canis lupus familiaris]
gi|126352708|ref|NP_001075304.1| high mobility group protein B1 [Equus caballus]
gi|281182655|ref|NP_001162380.1| high mobility group protein B1 [Papio anubis]
gi|284005385|ref|NP_001164752.1| high mobility group protein B1 [Oryctolagus cuniculus]
gi|388453289|ref|NP_001252735.1| high mobility group protein B1 [Macaca mulatta]
gi|291397530|ref|XP_002715999.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|291399645|ref|XP_002716268.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
gi|296203653|ref|XP_002748994.1| PREDICTED: high mobility group protein B1 isoform 2 [Callithrix
jacchus]
gi|297714815|ref|XP_002833818.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
gi|332242218|ref|XP_003270282.1| PREDICTED: high mobility group protein B1-like isoform 1 [Nomascus
leucogenys]
gi|332242222|ref|XP_003270284.1| PREDICTED: high mobility group protein B1-like isoform 3 [Nomascus
leucogenys]
gi|332242226|ref|XP_003270286.1| PREDICTED: high mobility group protein B1-like isoform 5 [Nomascus
leucogenys]
gi|332242228|ref|XP_003270287.1| PREDICTED: high mobility group protein B1-like isoform 6 [Nomascus
leucogenys]
gi|332242230|ref|XP_003270288.1| PREDICTED: high mobility group protein B1-like isoform 7 [Nomascus
leucogenys]
gi|332242232|ref|XP_003270289.1| PREDICTED: high mobility group protein B1-like isoform 8 [Nomascus
leucogenys]
gi|344284506|ref|XP_003414007.1| PREDICTED: high mobility group protein B1-like [Loxodonta africana]
gi|348583405|ref|XP_003477463.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
gi|426375079|ref|XP_004054375.1| PREDICTED: high mobility group protein B1-like isoform 1 [Gorilla
gorilla gorilla]
gi|426375081|ref|XP_004054376.1| PREDICTED: high mobility group protein B1-like isoform 2 [Gorilla
gorilla gorilla]
gi|426375083|ref|XP_004054377.1| PREDICTED: high mobility group protein B1-like isoform 3 [Gorilla
gorilla gorilla]
gi|426375085|ref|XP_004054378.1| PREDICTED: high mobility group protein B1-like isoform 4 [Gorilla
gorilla gorilla]
gi|426375087|ref|XP_004054379.1| PREDICTED: high mobility group protein B1-like isoform 5 [Gorilla
gorilla gorilla]
gi|426375089|ref|XP_004054380.1| PREDICTED: high mobility group protein B1-like isoform 6 [Gorilla
gorilla gorilla]
gi|426375091|ref|XP_004054381.1| PREDICTED: high mobility group protein B1-like isoform 7 [Gorilla
gorilla gorilla]
gi|426375093|ref|XP_004054382.1| PREDICTED: high mobility group protein B1-like isoform 8 [Gorilla
gorilla gorilla]
gi|441624073|ref|XP_004088962.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624077|ref|XP_004088963.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624084|ref|XP_004088964.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624090|ref|XP_004088965.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|441624094|ref|XP_004088966.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
gi|123369|sp|P09429.3|HMGB1_HUMAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|61213476|sp|Q6YKA4.3|HMGB1_CANFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|75076928|sp|Q4R844.3|HMGB1_MACFA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|119370722|sp|Q08IE6.3|HMGB1_HORSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028296|sp|B0CM99.1|HMGB1_CALJA RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028297|sp|B1MTB0.1|HMGB1_CALMO RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|189028298|sp|A9RA84.1|HMGB1_PAPAN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|32327|emb|CAA31110.1| unnamed protein product [Homo sapiens]
gi|1435197|gb|AAB08987.1| non-histone chromatin protein HMG1 [Homo sapiens]
gi|13097234|gb|AAH03378.1| High-mobility group box 1 [Homo sapiens]
gi|21410205|gb|AAH30981.1| High-mobility group box 1 [Homo sapiens]
gi|30582719|gb|AAP35586.1| high-mobility group box 1 [Homo sapiens]
gi|37380997|gb|AAQ91389.1| high mobility group protein 1 [Homo sapiens]
gi|37548602|gb|AAN11296.1| high mobility group protein B1 [Canis lupus familiaris]
gi|37722533|gb|AAN11319.1| high mobility group B1 protein [Canis lupus familiaris]
gi|44890726|gb|AAH66889.1| High-mobility group box 1 [Homo sapiens]
gi|45709178|gb|AAH67732.1| High-mobility group box 1 [Homo sapiens]
gi|51476884|emb|CAH18408.1| hypothetical protein [Homo sapiens]
gi|54697178|gb|AAV38961.1| high-mobility group box 1 [Homo sapiens]
gi|60654989|gb|AAX32058.1| high mobility group box 1 [synthetic construct]
gi|61357252|gb|AAX41359.1| high-mobility group box 1 [synthetic construct]
gi|67968740|dbj|BAE00728.1| unnamed protein product [Macaca fascicularis]
gi|115354285|dbj|BAF33339.1| high-mobility group box 1 [Equus caballus]
gi|119628862|gb|EAX08457.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628864|gb|EAX08459.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628865|gb|EAX08460.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628866|gb|EAX08461.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|119628867|gb|EAX08462.1| high-mobility group box 1, isoform CRA_a [Homo sapiens]
gi|121073803|gb|ABM47301.1| high mobility group box 1 protein [Homo sapiens]
gi|152112978|gb|ABS29271.1| high-mobility group box 1 [Homo sapiens]
gi|158256420|dbj|BAF84183.1| unnamed protein product [Homo sapiens]
gi|162415900|gb|ABX89266.1| high-mobility group box 1 (predicted) [Papio anubis]
gi|165934066|gb|ABY74560.1| high-mobility group box 1 (predicted) [Callithrix jacchus]
gi|169402702|gb|ACA53510.1| high-mobility group box 1 (predicted) [Callicebus moloch]
gi|183396417|gb|ACC62098.1| high-mobility group box 1 (predicted) [Rhinolophus ferrumequinum]
gi|193783763|dbj|BAG53745.1| unnamed protein product [Homo sapiens]
gi|196050399|gb|ACG64310.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
gi|216397586|gb|ACJ72830.1| high-mobility group box 1 (predicted) [Oryctolagus cuniculus]
gi|261858262|dbj|BAI45653.1| high-mobility group box 1 [synthetic construct]
gi|335775462|gb|AEH58580.1| high mobility group protein B1-like protein [Equus caballus]
gi|351700460|gb|EHB03379.1| High mobility group protein B1 [Heterocephalus glaber]
gi|387542840|gb|AFJ72047.1| high mobility group protein B1 [Macaca mulatta]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|402854944|ref|XP_003892110.1| PREDICTED: high mobility group protein B1-like isoform 1 [Papio
anubis]
gi|402854946|ref|XP_003892111.1| PREDICTED: high mobility group protein B1-like isoform 2 [Papio
anubis]
Length = 214
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|397495503|ref|XP_003818592.1| PREDICTED: high mobility group protein B1-like [Pan paniscus]
Length = 209
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|355705241|gb|EHH31166.1| hypothetical protein EGK_21042 [Macaca mulatta]
Length = 200
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKLKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|348551709|ref|XP_003461672.1| PREDICTED: high mobility group protein B1-like [Cavia porcellus]
Length = 214
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|390463605|ref|XP_003733066.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|149030113|gb|EDL85190.1| rCG63106 [Rattus norvegicus]
Length = 201
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 74 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 121
>gi|109510563|ref|XP_001059688.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392343404|ref|XP_003754879.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 213
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|41386729|ref|NP_788785.1| high mobility group protein B1 [Bos taurus]
gi|410947173|ref|XP_003980327.1| PREDICTED: high mobility group protein B1 [Felis catus]
gi|123367|sp|P10103.3|HMGB1_BOVIN RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|417|emb|CAA31284.1| unnamed protein product [Bos taurus]
gi|73586656|gb|AAI02930.1| HMGB1 protein [Bos taurus]
gi|146231904|gb|ABQ13027.1| high-mobility group box 1 [Bos taurus]
gi|296481787|tpg|DAA23902.1| TPA: high mobility group protein B1 [Bos taurus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|6754208|ref|NP_034569.1| high mobility group protein B1 [Mus musculus]
gi|6981026|ref|NP_037095.1| high mobility group protein B1 [Rattus norvegicus]
gi|407262920|ref|XP_003945388.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
gi|52783618|sp|P63159.2|HMGB1_RAT RecName: Full=High mobility group protein B1; AltName:
Full=Amphoterin; AltName: Full=Heparin-binding protein
p30; AltName: Full=High mobility group protein 1;
Short=HMG-1
gi|52783747|sp|P63158.2|HMGB1_MOUSE RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|9082303|gb|AAF82799.1|AF275734_1 amphoterin [Rattus norvegicus]
gi|53382|emb|CAA78042.1| non-histone chromosomal high-mobility group 1 protein [Mus
musculus]
gi|56365|emb|CAA68526.1| unnamed protein product [Rattus norvegicus]
gi|202885|gb|AAA40729.1| Amphoterin [Rattus norvegicus]
gi|208488|gb|AAA73006.1| high mobility group 1 protein [synthetic construct]
gi|437102|gb|AAA20508.1| HMG-1 [Mus musculus]
gi|13879238|gb|AAH06586.1| High mobility group box 1 [Mus musculus]
gi|14250281|gb|AAH08565.1| High mobility group box 1 [Mus musculus]
gi|26332344|dbj|BAC29902.1| unnamed protein product [Mus musculus]
gi|26351305|dbj|BAC39289.1| unnamed protein product [Mus musculus]
gi|38512146|gb|AAH61779.1| High mobility group box 1 [Rattus norvegicus]
gi|51859468|gb|AAH81839.1| High mobility group box 1 [Rattus norvegicus]
gi|52789475|gb|AAH83067.1| High mobility group box 1 [Mus musculus]
gi|54648288|gb|AAH85090.1| High mobility group box 1 [Mus musculus]
gi|56788766|gb|AAH88402.1| High mobility group box 1 [Rattus norvegicus]
gi|61403558|gb|AAH91741.1| High mobility group box 1 [Mus musculus]
gi|62739258|gb|AAH94030.1| High mobility group box 1 [Mus musculus]
gi|74186113|dbj|BAE34226.1| unnamed protein product [Mus musculus]
gi|84040262|gb|AAI10668.1| Hmgb1 protein [Mus musculus]
gi|84105496|gb|AAI11469.1| High mobility group box 1 [Mus musculus]
gi|149034811|gb|EDL89531.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034812|gb|EDL89532.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|149034813|gb|EDL89533.1| rCG42800, isoform CRA_a [Rattus norvegicus]
gi|195539712|gb|AAI68143.1| High mobility group box 1 [Rattus norvegicus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|281350894|gb|EFB26478.1| hypothetical protein PANDA_002732 [Ailuropoda melanoleuca]
Length = 157
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|190195542|gb|ACE73639.1| high-mobility group box 1 (predicted) [Sorex araneus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|149635755|ref|XP_001508702.1| PREDICTED: high mobility group protein B1-like [Ornithorhynchus
anatinus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|600761|gb|AAA57042.1| high mobility group 1 protein [Mus musculus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|296479353|tpg|DAA21468.1| TPA: high-mobility group box 1-like [Bos taurus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|380792505|gb|AFE68128.1| high mobility group protein B1, partial [Macaca mulatta]
Length = 183
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|126327421|ref|XP_001367294.1| PREDICTED: high mobility group protein B1-like isoform 2
[Monodelphis domestica]
Length = 216
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|148680486|gb|EDL12433.1| mCG1219 [Mus musculus]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + +
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTA 137
>gi|167744990|pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human
High Mobility Group Protein B1
Length = 173
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 93 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 140
>gi|5764678|gb|AAC27650.2| high mobility group protein [Nannospalax ehrenbergi]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|410256410|gb|JAA16172.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|351698285|gb|EHB01204.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|355754606|gb|EHH58507.1| hypothetical protein EGM_08375 [Macaca fascicularis]
Length = 263
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|49258307|pdb|1J3D|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2
Length = 78
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKRPPSAFF+F E R K E+P ++ + K G W S
Sbjct: 2 KKDPNAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQS 50
>gi|351706443|gb|EHB09362.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 226
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K P +T + V K G W ++S
Sbjct: 108 DPNAPKRPPSGFFLFCSEFRPKIKSTKPGIT-IGDVAKKLGEMWNNLS 154
>gi|157820087|ref|NP_001102843.1| high mobility group box 1 like [Rattus norvegicus]
gi|149043247|gb|EDL96779.1| rCG50935 [Rattus norvegicus]
Length = 214
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|444729709|gb|ELW70116.1| High mobility group protein B1 [Tupaia chinensis]
Length = 215
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|410966739|ref|XP_003989887.1| PREDICTED: high mobility group protein B4 [Felis catus]
Length = 193
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 7/77 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GK++K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 64 ALAKLDKARYQEEMMNYGGKKKKRRKRDPYAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 123
Query: 84 SAVGKAAGGKWKSMSPA 100
V KA+G W + + A
Sbjct: 124 Q-VAKASGKMWSATTGA 139
>gi|355700906|gb|EHH28927.1| hypothetical protein EGK_09214, partial [Macaca mulatta]
Length = 263
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|402865885|ref|XP_003897133.1| PREDICTED: high mobility group protein B1-like [Papio anubis]
Length = 221
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 92 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 139
>gi|343427561|emb|CBQ71088.1| probable NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 99
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KR K+KKDP PKRP SA+ F ++ R+ K NP S VG+ G KW MS A
Sbjct: 16 KRTTKSKKDPAAPKRPLSAYMFFSQDHRERVKTANPEA-GFSDVGRLLGAKWNEMSDA 72
>gi|395754558|ref|XP_002832281.2| PREDICTED: high mobility group protein B3 isoform 2 [Pongo abelii]
Length = 199
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|426236471|ref|XP_004012192.1| PREDICTED: high mobility group protein B1-like [Ovis aries]
Length = 213
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGNVAKKLGEMW 133
>gi|123368|sp|P07156.1|HMGB1_CRIGR RecName: Full=High mobility group protein B1; AltName: Full=High
mobility group protein 1; Short=HMG-1
gi|49483|emb|CAA68441.1| high mobility group protein [Cricetulus griseus]
Length = 180
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + +
Sbjct: 51 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTA 102
>gi|392352276|ref|XP_003751165.1| PREDICTED: high mobility group protein B1 [Rattus norvegicus]
Length = 187
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|358337037|dbj|GAA55457.1| structure-specific recognition protein 1 [Clonorchis sinensis]
Length = 723
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
KK KDPN P RPP+A+ ++ E R K N T+V+ V KAAG +W+++
Sbjct: 570 KKRVKDPNAPSRPPTAYIMWFNEHRDEISKSIGNPTSVAEVAKAAGERWRNI 621
>gi|229367846|gb|ACQ58903.1| High mobility group protein B2 [Anoplopoma fimbria]
Length = 213
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFFVF + R K+ENP ++ + + K G W + +
Sbjct: 92 DPNAPKRPPSAFFVFCSDHRPRIKEENPGIS-IGDIAKKLGEFWSTQT 138
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMS 98
KDPNKP+ S++ F+ R+ KK++P V+ + K +WK+MS
Sbjct: 3 KDPNKPRGKTSSYAFFVATCREEHKKKHPGVSVGFAEFSKKCSERWKTMS 52
>gi|52345682|ref|NP_001004888.1| high mobility group box 3 [Xenopus (Silurana) tropicalis]
gi|49522962|gb|AAH75290.1| MGC88931 protein [Xenopus (Silurana) tropicalis]
gi|89267024|emb|CAJ81774.1| high-mobility group box 3 [Xenopus (Silurana) tropicalis]
Length = 202
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|403305854|ref|XP_003943467.1| PREDICTED: high mobility group protein B3 [Saimiri boliviensis
boliviensis]
Length = 202
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|145541886|ref|XP_001456631.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424443|emb|CAK89234.1| unnamed protein product [Paramecium tetraurelia]
Length = 235
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
EKK ++DPN PK+P + FF+F +++R+ NP + ++ + + AG KW SMS
Sbjct: 41 EKKKERDPNAPKKPLTPFFLFNQKYREKVVDRNPEI-KLTQISQMAGNKWSSMS 93
>gi|397466921|ref|XP_003805186.1| PREDICTED: high mobility group protein B3 [Pan paniscus]
gi|410057106|ref|XP_001135676.3| PREDICTED: high mobility group protein B3 isoform 1 [Pan
troglodytes]
gi|426397737|ref|XP_004065063.1| PREDICTED: high mobility group protein B3 isoform 2 [Gorilla
gorilla gorilla]
gi|119619804|gb|EAW99398.1| high-mobility group box 3, isoform CRA_b [Homo sapiens]
Length = 220
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 109 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 155
>gi|229368114|gb|ACQ59037.1| High mobility group protein B1 [Anoplopoma fimbria]
Length = 206
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E P T + V K G W
Sbjct: 85 KKKFKDPNAPKRPPSAFFIFCAEYRPKVKGETPGAT-IGDVAKRLGEMW 132
>gi|410219302|gb|JAA06870.1| high mobility group box 3 [Pan troglodytes]
Length = 199
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|296236643|ref|XP_002763412.1| PREDICTED: high mobility group protein B3-like [Callithrix jacchus]
Length = 203
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|167773205|gb|ABZ92037.1| high-mobility group box 3 [synthetic construct]
Length = 198
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|109132602|ref|XP_001091672.1| PREDICTED: high mobility group protein B3-like isoform 3 [Macaca
mulatta]
gi|109132606|ref|XP_001091441.1| PREDICTED: high mobility group protein B3-like isoform 1 [Macaca
mulatta]
gi|402911729|ref|XP_003918461.1| PREDICTED: high mobility group protein B3 isoform 1 [Papio anubis]
gi|402911731|ref|XP_003918462.1| PREDICTED: high mobility group protein B3 isoform 2 [Papio anubis]
Length = 201
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|2285963|emb|CAA71143.1| high mobility group protein 2a [Homo sapiens]
Length = 200
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|71143137|ref|NP_005333.2| high mobility group protein B3 [Homo sapiens]
gi|426397735|ref|XP_004065062.1| PREDICTED: high mobility group protein B3 isoform 1 [Gorilla
gorilla gorilla]
gi|426397739|ref|XP_004065064.1| PREDICTED: high mobility group protein B3 isoform 3 [Gorilla
gorilla gorilla]
gi|85701353|sp|O15347.4|HMGB3_HUMAN RecName: Full=High mobility group protein B3; AltName: Full=High
mobility group protein 2a; Short=HMG-2a; AltName:
Full=High mobility group protein 4; Short=HMG-4
gi|47124341|gb|AAH70482.1| HMGB3 protein [Homo sapiens]
gi|117645316|emb|CAL38124.1| hypothetical protein [synthetic construct]
gi|117646384|emb|CAL38659.1| hypothetical protein [synthetic construct]
gi|119619803|gb|EAW99397.1| high-mobility group box 3, isoform CRA_a [Homo sapiens]
gi|410351655|gb|JAA42431.1| high mobility group box 3 [Pan troglodytes]
gi|410351657|gb|JAA42432.1| high mobility group box 3 [Pan troglodytes]
Length = 200
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|406862701|gb|EKD15750.1| nucleosome binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 102
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R +K KKDPN PKR SA+ F E R+ ++ENP +T VGK G +WK+++
Sbjct: 14 RTEKKKKDPNAPKRGLSAYMFFANEQRENVREENPGIT-FGQVGKVLGERWKALN 67
>gi|348538096|ref|XP_003456528.1| PREDICTED: high mobility group protein B2-like [Oreochromis
niloticus]
Length = 196
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFFVF + R K++NP ++ + + K G W + S
Sbjct: 91 DPNAPKRPPSAFFVFCSDHRPKIKEDNPGIS-IGDIAKKLGEMWATQS 137
Score = 35.0 bits (79), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSP 99
KDPNKP+ S++ F+ R+ KK++P + + K +WK+MSP
Sbjct: 3 KDPNKPRGKTSSYAFFVATCREEHKKKHPGTSVNFAEFSKKCSERWKTMSP 53
>gi|145540136|ref|XP_001455758.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124423566|emb|CAK88361.1| unnamed protein product [Paramecium tetraurelia]
Length = 226
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 8/62 (12%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA--------VSAVGKAAGGKWKS 96
EKK ++DPN PKRP + FF+F +++R + NP + ++ + + AG KW S
Sbjct: 23 EKKKERDPNAPKRPLTPFFLFSQKYRDKVLERNPGIDQRDYSLEVKLTQISQMAGQKWNS 82
Query: 97 MS 98
MS
Sbjct: 83 MS 84
>gi|335892930|gb|AEH59760.1| high mobility group box 2 [Lethenteron camtschaticum]
Length = 194
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
K+ KDPN PKRPPSAFFVF E R K ++P + + + K G W ++P
Sbjct: 84 KRKTKDPNAPKRPPSAFFVFCSEHRPKVKADHPGL-GIGEIAKRLGEMWGLLTP 136
>gi|196005089|ref|XP_002112411.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
gi|190584452|gb|EDV24521.1| hypothetical protein TRIADDRAFT_56397 [Trichoplax adhaerens]
Length = 253
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%), Gaps = 10/56 (17%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKK----ENPNVTAVSAVGKAAGGKWKSMSPA 100
K DP+KPKRP +A+F FL EFRK K E +T++S G KW++M+PA
Sbjct: 133 KADPDKPKRPQTAYFYFLAEFRKAMKAKGVIEGKKLTSLS------GEKWRAMTPA 182
>gi|444729656|gb|ELW70065.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
+G+ EKK K DPN PKRPP AFF+F E+ K+E+P+++ + V K G W
Sbjct: 82 KGETEKKFK-DPNVPKRPPLAFFLFCSEYHPKIKEEHPDLS-IGDVAKKLGEMW 133
>gi|395857899|ref|XP_003801318.1| PREDICTED: high mobility group protein B4 [Otolemur garnettii]
Length = 187
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ KKDP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKLDKARYQEEMMHYDGKRKKRRKKDPQAPRRPPSSFLLFCKDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKW 94
V KA+G W
Sbjct: 122 Q-VAKASGKMW 131
>gi|255715687|ref|XP_002554125.1| KLTH0E14850p [Lachancea thermotolerans]
gi|238935507|emb|CAR23688.1| KLTH0E14850p [Lachancea thermotolerans CBS 6340]
Length = 93
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + KKDPN PKR SA+ F E R + ENP VT VG+ G KWK+++
Sbjct: 9 KRTTRRKKDPNAPKRALSAYMFFANENRDIVRAENPGVT-FGQVGRLLGDKWKALT 63
>gi|449706835|gb|EMD46595.1| high mobility group (HMG) box domain containing protein, partial
[Entamoeba histolytica KU27]
Length = 76
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
PN+PKRPP+ +F++L E R + K+E+P++ + + K A +WK++
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDI-RFTEISKVASEQWKAL 70
>gi|221221758|gb|ACM09540.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKVETPGLS-IGDVAKKLGEKWNNLT 136
>gi|444732714|gb|ELW72989.1| Enkurin [Tupaia chinensis]
Length = 362
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + K G W
Sbjct: 86 KKKSKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDAAKKLGEMW 133
>gi|256080078|ref|XP_002576310.1| structure specific recognition protein [Schistosoma mansoni]
gi|350646026|emb|CCD59303.1| structure specific recognition protein,putative [Schistosoma
mansoni]
Length = 632
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
SKRQ K++KK K DPN P RP SA+F++ E R+ K +V+ V KAAG W++M
Sbjct: 530 SKRQTKKQKKPK-DPNAPTRPLSAYFLWFNENREKIAKNLGGQNSVAEVAKAAGEIWRNM 588
>gi|221221148|gb|ACM09235.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLT 136
>gi|349802605|gb|AEQ16775.1| putative high mobility group box 3 [Pipa carvalhoi]
Length = 149
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 64 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 110
>gi|351715334|gb|EHB18253.1| High mobility group protein B3, partial [Heterocephalus glaber]
Length = 151
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPP FF+F EFR K NP ++ + V K G W ++S
Sbjct: 40 DPNAPKRPPPGFFLFFSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 86
>gi|365982187|ref|XP_003667927.1| hypothetical protein NDAI_0A05290 [Naumovozyma dairenensis CBS
421]
gi|343766693|emb|CCD22684.1| hypothetical protein NDAI_0A05290 [Naumovozyma dairenensis CBS
421]
Length = 93
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKR SA+ F + R K ENPN+T +GK G KWK ++
Sbjct: 15 KKDPNAPKRGLSAYMFFANDNRDIVKAENPNIT-FGQIGKVLGAKWKELN 63
>gi|223649496|gb|ACN11506.1| High mobility group protein B3 [Salmo salar]
Length = 207
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
KKDPN PKRPPS FF+F + R K ++P++ + V K G +W +++ A
Sbjct: 87 KKDPNAPKRPPSGFFIFCADHRPKIKAQHPSL-GIGDVAKKLGEQWNNLTDAT 138
>gi|148238271|ref|NP_001081794.1| high mobility group protein-1 [Xenopus laevis]
gi|709959|gb|AAC59859.1| high mobility group protein-1 [Xenopus laevis]
Length = 210
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F +FR K E+P T + + K G W
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCSDFRPKIKGEHPGST-IGDIAKKLGEMW 132
>gi|221221482|gb|ACM09402.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLT 136
>gi|221220042|gb|ACM08682.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKVETPGLS-IGDVAKKLGEKWNNLT 136
>gi|49115548|gb|AAH73449.1| HMG-1 protein [Xenopus laevis]
Length = 210
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F +FR K E+P T + + K G W
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCSDFRPKIKGEHPGST-IGDIAKKLGEMW 132
>gi|310793467|gb|EFQ28928.1| HMG box protein [Glomerella graminicola M1.001]
Length = 103
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+AKKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKILGERWKALN 68
>gi|444731734|gb|ELW72082.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P + + V K G W
Sbjct: 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-PIGDVAKKLGEMW 127
>gi|159162414|pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
gi|159162415|pdb|1HMF|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1
Length = 77
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN PKRPPSAFF+F E+R K E+P ++ + V K G W + +
Sbjct: 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTA 49
>gi|1085210|pir||S48708 high-mobility-group-1 protein - trout
Length = 204
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLT 136
>gi|409050062|gb|EKM59539.1| hypothetical protein PHACADRAFT_250106 [Phanerochaete carnosa
HHB-10118-sp]
Length = 256
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 25 GKRKAATAKLDSGSKRQGKREKKAK-KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
GKRKA D G +GKR++K K KDPN PKRPPS++ +F E R+ K ++PN+
Sbjct: 73 GKRKARGD--DEG---EGKRKRKTKPKDPNAPKRPPSSYLLFQNEVRQELKAKHPNIPNN 127
Query: 84 SAVGKAAGGKWKSM 97
+ K A W M
Sbjct: 128 ELLAKIAKA-WGDM 140
>gi|349576469|dbj|GAA21640.1| K7_Nhp6bp [Saccharomyces cerevisiae Kyokai no. 7]
Length = 99
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + KKDPN PKR SA+ F E R + ENP+VT VG+ G KWK+++
Sbjct: 15 KRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVT-FGQVGRILGEKWKALT 69
>gi|238486744|ref|XP_002374610.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
gi|317144043|ref|XP_003189559.1| non-histone chromosomal protein 6 [Aspergillus oryzae RIB40]
gi|220699489|gb|EED55828.1| nucleosome binding protein (Nhp6a), putative [Aspergillus flavus
NRRL3357]
Length = 104
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 39 KRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K +G R ++ KKDPN PKR SA+ F + R+ ++ENP ++ VGK G KWK++S
Sbjct: 9 KTKGTRVERKKKDPNAPKRGLSAYMFFANDNREKVREENPGIS-FGQVGKMLGEKWKALS 67
Query: 99 PA 100
A
Sbjct: 68 EA 69
>gi|89475586|gb|ABD73318.1| high-mobility group box 1 [Oncorhynchus mykiss]
Length = 154
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLT 136
>gi|223646906|gb|ACN10211.1| High mobility group-T protein [Salmo salar]
gi|223672769|gb|ACN12566.1| High mobility group-T protein [Salmo salar]
Length = 203
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLT 136
>gi|358391632|gb|EHK41036.1| hypothetical protein TRIATDRAFT_259074 [Trichoderma atroviride
IMI 206040]
Length = 101
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+AKKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++
Sbjct: 16 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKLLGERWKALN 67
>gi|170585494|ref|XP_001897518.1| HMG box family protein [Brugia malayi]
gi|158595065|gb|EDP33640.1| HMG box family protein [Brugia malayi]
Length = 364
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 31 TAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA 90
T ++ S + R+ R+K+ KKDPN+P++P SA+ +F + + T K +PN + V K
Sbjct: 80 TNQVTSRTSRRTIRKKRPKKDPNEPQKPVSAYALFFRDTQATIKGRSPNAS-FGEVSKIV 138
Query: 91 GGKWKSM 97
W S+
Sbjct: 139 ASMWDSL 145
>gi|609551|gb|AAA58771.1| HMG-1 [Oncorhynchus mykiss]
Length = 204
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLT 136
>gi|213513415|ref|NP_001133101.1| high mobility group protein B1 [Salmo salar]
gi|197631937|gb|ACH70692.1| high-mobility group box 1 [Salmo salar]
Length = 203
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLT 136
>gi|444722008|gb|ELW62714.1| High mobility group protein B1 [Tupaia chinensis]
Length = 224
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFFFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|432889764|ref|XP_004075350.1| PREDICTED: high mobility group-T protein-like [Oryzias latipes]
Length = 194
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
++KK KDPN PKRPPSAFF+F +FR K E+P ++ + K G W S S
Sbjct: 83 QKKKRFKDPNAPKRPPSAFFLFCADFRPKIKSESPGLS-IGDTAKKLGEMWNSSS 136
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSP 99
KDP KP+ S++ F++ R+ KK++P+ + S K +WK+MSP
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSP 53
>gi|328769557|gb|EGF79601.1| hypothetical protein BATDEDRAFT_89692 [Batrachochytrium
dendrobatidis JAM81]
Length = 99
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
++G +KK++KDP+ PKRP SAF +F +E R ++ENP+ + +GK G W+ ++
Sbjct: 14 KRGDDKKKSRKDPDAPKRPLSAFMIFSKENRPRIREENPDAS-FGDLGKLLGAAWRELN 71
>gi|46105649|ref|XP_380561.1| hypothetical protein FG00385.1 [Gibberella zeae PH-1]
gi|110287687|sp|Q4IQX3.1|NHP6_GIBZE RecName: Full=Non-histone chromosomal protein 6
gi|408400690|gb|EKJ79767.1| hypothetical protein FPSE_00047 [Fusarium pseudograminearum
CS3096]
Length = 101
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+AKKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++
Sbjct: 15 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKLLGERWKALN 66
>gi|185135647|ref|NP_001118186.1| high mobility group-T protein [Oncorhynchus mykiss]
gi|123382|sp|P07746.2|HMGT_ONCMY RecName: Full=High mobility group-T protein; Short=HMG-T; AltName:
Full=HMG-T1; Short=HMG-1
gi|64328|emb|CAA26500.1| unnamed protein product [Oncorhynchus mykiss]
Length = 204
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRP SAFF+F +FR K E P ++ + V K G KW +++
Sbjct: 85 KKRFKDPNAPKRPSSAFFIFCADFRPQVKGETPGLS-IGDVAKKLGEKWNNLT 136
>gi|118343938|ref|NP_001071793.1| transcription factor protein [Ciona intestinalis]
gi|70570759|dbj|BAE06616.1| transcription factor protein [Ciona intestinalis]
Length = 164
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+KR + K +KD N PK+P +A+F+F+ + R+ KENP++ +++ + K G KW+
Sbjct: 4 TKRSSLKTLKFRKDKNAPKKPLTAYFIFMNDCRQKVIKENPSL-SITEISKLVGKKWRET 62
Query: 98 S 98
S
Sbjct: 63 S 63
>gi|365762037|gb|EHN03653.1| Nhp6bp [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
gi|401841847|gb|EJT44170.1| NHP6B-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 102
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + KKDPN PKR SA+ F E R + ENP+VT VG+ G KWK+++
Sbjct: 18 KRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVT-FGQVGRILGEKWKALT 72
>gi|348525338|ref|XP_003450179.1| PREDICTED: high mobility group-T protein-like isoform 1
[Oreochromis niloticus]
Length = 200
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
++KK KDPN PKRPPSAFF+F +FR K E P ++ + K G W S S
Sbjct: 83 QKKKRFKDPNAPKRPPSAFFLFCADFRPKIKSEYPGLS-IGDTAKKLGEMWNSSS 136
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSP 99
KDP KP+ S++ F++ R+ KK++P+ + S K +WK+MSP
Sbjct: 3 KDPKKPRGKMSSYAYFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSP 53
>gi|401626897|gb|EJS44815.1| nhp6bp [Saccharomyces arboricola H-6]
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + KKDPN PKR SA+ F E R + ENP+VT VG+ G +WK+++
Sbjct: 15 KRTTRRKKDPNAPKRGLSAYMFFANETRDIVRSENPDVT-FGQVGRILGERWKALT 69
>gi|205539816|sp|P0C6E5.1|HG3BL_HUMAN RecName: Full=Putative high mobility group protein B3-like protein
Length = 187
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 28 KAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVG 87
KA D K G + KKDPN PKRPPS FF+F EF K NP + + V
Sbjct: 65 KADKVHYDQEIKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI-PIGDVA 123
Query: 88 KAAGGKWKSMS 98
K G WK+++
Sbjct: 124 KKLGEMWKNLN 134
>gi|380476672|emb|CCF44585.1| non-histone chromosomal protein 6 [Colletotrichum higginsianum]
Length = 96
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+AKKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++
Sbjct: 17 KRAKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKILGERWKALN 68
>gi|294463267|gb|ADE77169.1| unknown [Picea sitchensis]
Length = 482
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 11/97 (11%)
Query: 8 GAARVSQEALKP-NDRKVGKRKAATAKLDSGSKRQGKRE-----KKAKKDPNKPKRPPSA 61
G R EALK +D + K+K A L+ + Q E K+ +KDP+KPK P +A
Sbjct: 202 GQERRETEALKLLHDEQ--KQKTALELLEQYLQYQKDAEGKEKSKRKEKDPSKPKHPVTA 259
Query: 62 FFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
FF F E R +EN NV + K G +WK+M+
Sbjct: 260 FFAFTNERRAALLEENHNVL---QIAKILGEEWKNMT 293
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPN+PK+PP++F +F +E RK +E P V + + KWK + A
Sbjct: 377 DPNRPKKPPTSFLLFSKETRKKLVQERPGVNNTT-INALISLKWKDLGTA 425
>gi|365759088|gb|EHN00901.1| Abf2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 185
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
PKRP SA+F+FL++ R F KENP + S + K AG KW+++
Sbjct: 45 PKRPTSAYFLFLQDHRSQFAKENPTLRP-SEISKIAGEKWQTL 86
>gi|444723313|gb|ELW63971.1| High mobility group protein B1 [Tupaia chinensis]
Length = 171
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPP FF+F E+R K+E P +T + V K G W
Sbjct: 77 KKKFKDPNAPKRPPLVFFLFCSEYRPKIKREQPGLT-IDDVAKKLGEMW 124
>gi|409075359|gb|EKM75740.1| hypothetical protein AGABI1DRAFT_116212 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198009|gb|EKV47935.1| hypothetical protein AGABI2DRAFT_191645 [Agaricus bisporus var.
bisporus H97]
Length = 262
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 24 VGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
KRKA A D + ++ KR K K DPN PKRP S++ +F E RK K ++P +T
Sbjct: 51 THKRKADVALDDDEAPKKRKRNAKPK-DPNAPKRPASSYILFQNEIRKQLKDQHPELTNA 109
Query: 84 SAVGKAAGGKWKSMS 98
+ WK MS
Sbjct: 110 ELLN-MISDIWKKMS 123
>gi|401838192|gb|EJT41931.1| ABF2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 185
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
PKRP SA+F+FL++ R F KENP + S + K AG KW+++
Sbjct: 45 PKRPTSAYFLFLQDHRSQFAKENPTLRP-SEISKIAGEKWQTL 86
>gi|395850653|ref|XP_003797893.1| PREDICTED: uncharacterized protein LOC100942737 [Otolemur
garnettii]
Length = 633
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF F E+R K E+P ++ + V + G W
Sbjct: 509 KKKFKDPNAPKRPPSAFFWFCSEYRPKIKGEHPGLS-IGDVAEKLGEMW 556
>gi|367043490|ref|XP_003652125.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL
8126]
gi|346999387|gb|AEO65789.1| hypothetical protein THITE_126111 [Thielavia terrestris NRRL
8126]
Length = 103
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 42 GKREKK-AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GK EK+ KKDPN PKR SA+ F E R+ ++ENP V+ VGK G +WK++S
Sbjct: 10 GKVEKRRGKKDPNAPKRGLSAYMFFANEQRENVREENPGVS-FGQVGKILGERWKALS 66
>gi|302652822|ref|XP_003018251.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
gi|291181876|gb|EFE37606.1| hypothetical protein TRV_07738 [Trichophyton verrucosum HKI 0517]
Length = 132
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR SA+ +F E R ++ENPN+T VGK G +WK++S
Sbjct: 60 DPNAPKRGLSAYMIFANEQRAAVREENPNIT-FGQVGKVLGERWKALS 106
>gi|1870104|emb|CAA85042.1| NHP6B [Saccharomyces cerevisiae]
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + KKDPN PKR SA+ F E R + ENP+VT VG+ G +WK+++
Sbjct: 15 KRTTRRKKDPNAPKRRLSAYMFFANENRDIVRSENPDVT-FGQVGRILGERWKALT 69
>gi|366996751|ref|XP_003678138.1| hypothetical protein NCAS_0I01260 [Naumovozyma castellii CBS
4309]
gi|342304009|emb|CCC71794.1| hypothetical protein NCAS_0I01260 [Naumovozyma castellii CBS
4309]
Length = 94
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
+K KR + KKDPN PKR S++ F R + ENP+VT VGK G +WK+
Sbjct: 4 STKEPKKRTVRRKKDPNAPKRALSSYMFFANATRDIVRSENPDVT-FGQVGKLLGERWKA 62
Query: 97 MSP 99
++P
Sbjct: 63 LTP 65
>gi|297813579|ref|XP_002874673.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
gi|297320510|gb|EFH50932.1| hypothetical protein ARALYDRAFT_489947 [Arabidopsis lyrata subsp.
lyrata]
Length = 448
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 49/85 (57%), Gaps = 7/85 (8%)
Query: 14 QEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKK-DPNKPKRPPSAFFVFLEEFRKT 72
QEAL+ + K+K T + +K K +KK +K DPNKPK+P S++F+F +E RK+
Sbjct: 337 QEALQ-----LLKKKEKTDNIIKKTKEMTKNKKKNEKVDPNKPKKPASSYFLFCKEARKS 391
Query: 73 FKKENPNVTAVSAVGKAAGGKWKSM 97
+E+P + S V KWK +
Sbjct: 392 VLEEHPGINN-STVTAHISLKWKEL 415
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP KPK P SA+ ++ E R K EN +V V K G +WK++S
Sbjct: 244 DPLKPKHPISAYLIYANERRAALKGENKSVI---EVAKMTGEEWKNLS 288
>gi|332254661|ref|XP_003276450.1| PREDICTED: high mobility group protein B4 [Nomascus leucogenys]
Length = 189
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AK+D ++ GKR+K+ K+DP P+RPPS+F +F ++ K+ENPN + V
Sbjct: 62 ALAKVDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVV 121
Query: 84 SAVGKAAGGKWKSMS 98
V KA G W + +
Sbjct: 122 Q-VAKATGEMWSTTT 135
>gi|444725503|gb|ELW66067.1| Trem-like transcript 1 protein [Tupaia chinensis]
Length = 668
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR PS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 586 DPNAPKRRPSVFFLFCSEFRLKIKSTNPGIS-IGDVAKKLGEMWNNLS 632
>gi|296227498|ref|XP_002759405.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK +DPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFEDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGKMW 133
>gi|300677968|gb|ADK27291.1| high-mobility-group B1b [Gekko japonicus]
Length = 215
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK +DPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFEDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|444732719|gb|ELW72994.1| High mobility group protein B1 [Tupaia chinensis]
Length = 289
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
DPN PKRPPSAFF+F E+R K E+P ++ V V K G W
Sbjct: 91 DPNSPKRPPSAFFLFCSEYRPKIKGEHPGLS-VGDVTKKLGEMW 133
>gi|444720594|gb|ELW61376.1| High mobility group protein B3 [Tupaia chinensis]
Length = 124
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G ++GK+ KKD N PKRPPS FF+F EF K N ++ + V K G W
Sbjct: 3 DYGPAKEGKK----KKDSNAPKRPPSGFFLFFSEFHPKIKSSNHGIS-IRDVAKTLGEMW 57
Query: 95 KSMS 98
++S
Sbjct: 58 NNLS 61
>gi|367006853|ref|XP_003688157.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS
4417]
gi|357526464|emb|CCE65723.1| hypothetical protein TPHA_0M01480 [Tetrapisispora phaffii CBS
4417]
Length = 93
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
+G + KR + KKDPN PKR SA+ F E R + ENP+V+ +G+ G KW+
Sbjct: 2 AGPREIKKRTHRRKKDPNAPKRAMSAYMFFANETRDIVRAENPDVS-FGQIGRLLGEKWR 60
Query: 96 SMS 98
+++
Sbjct: 61 ALT 63
>gi|56756695|gb|AAW26520.1| SJCHGC07008 protein [Schistosoma japonicum]
Length = 213
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
SKRQ K++KK K DPN P RP SA+F++ E R+ K +V+ V KA G W++
Sbjct: 112 SSKRQTKKQKKPK-DPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRN 170
Query: 97 M 97
M
Sbjct: 171 M 171
>gi|393219482|gb|EJD04969.1| HMG-box [Fomitiporia mediterranea MF3/22]
Length = 114
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KKDPN PKR SA+ F +++R+ K ENP+ VGK G KWK M
Sbjct: 25 KGKKDPNAPKRALSAYMFFSQDWRERVKAENPDA-GFGEVGKLLGAKWKEMD 75
>gi|444726214|gb|ELW66754.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+G+ EKK K DPN PKRPPSAF +F E+R K E+P + + V K G W + +
Sbjct: 31 KGETEKKVK-DPNAPKRPPSAFLLFCSEYRPKIKGEHPGLF-IGDVAKKLGEMWNNTA 86
>gi|170784871|ref|NP_001116308.1| wu:fk52f12 [Danio rerio]
Length = 213
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
GKR KK KDPN PKRPPS FF+F E R K + P++ + V K G W ++ A
Sbjct: 81 GKRGKK--KDPNAPKRPPSGFFLFCSEHRPQIKAQYPSL-GIGDVAKKLGEMWNGLTDA 136
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMS 98
AK DP KPK SA+ F++ R+ KK++P + + S K G+WK+M+
Sbjct: 2 AKGDPRKPKGKMSAYAYFVQTCREEHKKKSPEIPVSFSEFSKRCSGRWKAMT 53
>gi|47124491|gb|AAH70148.1| High-mobility group box 4 [Homo sapiens]
Length = 112
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
GKR+K+ K+DP P+RPPS+F +F ++ K+ENPN + V V KA G W +
Sbjct: 6 GKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPNWSVVQ-VAKATGKMWST 59
>gi|403222987|dbj|BAM41118.1| high-mobility-group protein [Theileria orientalis strain
Shintoku]
Length = 93
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKW 94
S S ++GKR KKDPN PKR S++ F +E R KENP++ V+ VGK G W
Sbjct: 6 SKSAKKGKR---TKKDPNAPKRALSSYMFFAKEKRNELIKENPDLAKDVATVGKLVGAAW 62
Query: 95 KSMS 98
S+
Sbjct: 63 NSLD 66
>gi|350409390|ref|XP_003488719.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus impatiens]
Length = 736
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+KD NKPKRPP+AF ++L R+ K ENP + AV+ + K G W+ +
Sbjct: 543 EKDANKPKRPPTAFMIWLNSARERIKAENPGI-AVTEIAKKGGEMWREL 590
>gi|339046261|ref|NP_009647.2| Nhp6bp [Saccharomyces cerevisiae S288c]
gi|341942236|sp|P11633.3|NHP6B_YEAST RecName: Full=Non-histone chromosomal protein 6B
gi|4036|emb|CAA33378.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45271022|gb|AAS56892.1| YBR089C-A [Saccharomyces cerevisiae]
gi|151946484|gb|EDN64706.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190408749|gb|EDV12014.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256274037|gb|EEU08951.1| Nhp6bp [Saccharomyces cerevisiae JAY291]
gi|290878106|emb|CBK39165.1| Nhp6bp [Saccharomyces cerevisiae EC1118]
gi|333454471|tpg|DAA07210.2| TPA: Nhp6bp [Saccharomyces cerevisiae S288c]
Length = 99
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + KKDPN PKR SA+ F E R + ENP+VT VG+ G +WK+++
Sbjct: 15 KRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVT-FGQVGRILGERWKALT 69
>gi|241632349|ref|XP_002410341.1| structure-specific recognition protein, putative [Ixodes
scapularis]
gi|215503398|gb|EEC12892.1| structure-specific recognition protein, putative [Ixodes
scapularis]
Length = 730
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+R+ K ++D NKPKR PSA+F++L E R+ K++NP ++ + K AG WK+++
Sbjct: 543 RRKPKKERDENKPKRAPSAYFLWLAENREQIKRDNPGF-GITDITKRAGELWKTVT 597
>gi|340713595|ref|XP_003395326.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus terrestris]
Length = 735
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+KD NKPKRPP+AF ++L R+ K ENP + AV+ + K G W+ +
Sbjct: 543 EKDANKPKRPPTAFMIWLNSARERIKAENPGI-AVTEIAKKGGEMWREL 590
>gi|91088019|ref|XP_974107.1| PREDICTED: similar to GA18041-PA [Tribolium castaneum]
gi|270012067|gb|EFA08515.1| hypothetical protein TcasGA2_TC006168 [Tribolium castaneum]
Length = 240
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
SG R+ + K K PNKPK+P + +F F+++ R K+NPN+ V + A WK
Sbjct: 27 SGVSRKAADKLKELKIPNKPKKPLTPYFKFIQDHRPALLKQNPNLKVTQVVSQLAAD-WK 85
Query: 96 SMSPAV 101
++ P++
Sbjct: 86 TVDPSL 91
>gi|355762621|gb|EHH62030.1| hypothetical protein EGM_20207 [Macaca fascicularis]
Length = 201
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVPKKLGEMWNNLN 135
>gi|444728196|gb|ELW68660.1| High mobility group protein B1 [Tupaia chinensis]
Length = 221
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+R K E+P ++ V K G W + +
Sbjct: 101 KKKFKDPNAPKRPPSAFFLFCSEYRSKIKGEHPGLSN-GDVAKKLGEIWNNTA 152
>gi|148703464|gb|EDL35411.1| mCG50005 [Mus musculus]
Length = 206
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
DPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 91 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|222087985|gb|ACM41855.1| high mobility group box 2-like protein [Epinephelus coioides]
Length = 212
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFFVF E R K+E P ++ + K G W + S
Sbjct: 87 DPNAPKRPPSAFFVFCSEHRPRIKEECPGIS-IGDTAKKLGELWSTQS 133
>gi|388854657|emb|CCF51814.1| probable NHP6B-nonhistone chromosomal protein [Ustilago hordei]
Length = 99
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KR K+KKDP PKRP SA+ F ++ R+ K +NP VG+ G +WK MS A
Sbjct: 16 KRTTKSKKDPAAPKRPLSAYMFFSQDQRERVKADNPEA-GFGDVGRLLGARWKEMSDA 72
>gi|441669023|ref|XP_004092092.1| PREDICTED: high mobility group protein B1-like [Nomascus
leucogenys]
Length = 204
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 29/46 (63%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA 90
EKK KDPN PKRPP AFF+F E+R K E+P ++ V K A
Sbjct: 84 EKKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLA 129
>gi|444721179|gb|ELW61931.1| High mobility group protein B1 [Tupaia chinensis]
Length = 212
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+P ++ + + K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-MGDIAKKLGELW 133
>gi|392340368|ref|XP_003754052.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392347889|ref|XP_003749961.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 215
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|353351504|emb|CBX36444.1| high-mobility-group-1 protein [Plecoglossus altivelis]
Length = 204
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F +FR K E P T + V K G W
Sbjct: 85 KKRFKDPNAPKRPPSAFFIFCADFRAKVKGETPGPT-IGDVAKKLGEMW 132
>gi|205780950|sp|B2RPK0.1|HGB1A_HUMAN RecName: Full=Putative high mobility group protein B1-like 1;
AltName: Full=High mobility group protein B1 pseudogene
1; AltName: Full=Putative high mobility group protein
1-like 1; Short=HMG-1L1
gi|187950665|gb|AAI37483.1| High-mobility group box 1-like 1 [Homo sapiens]
gi|187953577|gb|AAI37484.1| High-mobility group box 1-like 1 [Homo sapiens]
Length = 211
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|167396118|ref|XP_001741910.1| non-histone chromosomal protein [Entamoeba dispar SAW760]
gi|165893321|gb|EDR21615.1| non-histone chromosomal protein, putative [Entamoeba dispar
SAW760]
Length = 111
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
PN+PK+P SA+F++L E R + K+E+P++ + + K A +WK++
Sbjct: 23 PNRPKKPQSAYFLYLNEHRASIKEEHPDIK-FTEISKVASEQWKAL 67
>gi|296202119|ref|XP_002748265.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390463329|ref|XP_003733013.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 214
Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK +DPN PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFEDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEIW 133
>gi|148701877|gb|EDL33824.1| mCG140646 [Mus musculus]
Length = 207
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+ K E+P + V V K G W + +
Sbjct: 87 KKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGL-CVGDVAKKLGELWNNTA 138
>gi|358379174|gb|EHK16855.1| hypothetical protein TRIVIDRAFT_217092 [Trichoderma virens
Gv29-8]
Length = 102
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G+K GK K+ KKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+
Sbjct: 10 GAKDGGK--KRTKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKLLGERWKA 66
Query: 97 MS 98
++
Sbjct: 67 LN 68
>gi|345780695|ref|XP_851529.2| PREDICTED: high mobility group protein B4 [Canis lupus familiaris]
Length = 193
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GK++K+ K+DP P+RPPS+F +F ++ K+ENP + V
Sbjct: 64 ALAKLDKARYQEEMMNYVGKKKKRRKRDPQAPRRPPSSFLIFCQDHYAQLKRENPTWSVV 123
Query: 84 SAVGKAAGGKWKSMSPA 100
V KA+G W S A
Sbjct: 124 Q-VAKASGRMWSVTSGA 139
>gi|444722397|gb|ELW63094.1| High mobility group protein B1 [Tupaia chinensis]
Length = 178
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEPPGLS-IGDVAKKLGEMW 133
>gi|351715817|gb|EHB18736.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 165
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
+G+ EKK K DPN PKRPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 82 KGETEKKFK-DPNAPKRPPSAFFLFYSEYCPQIKGEHPGLS-IGDVAKKLGEMW 133
>gi|448079731|ref|XP_004194450.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359375872|emb|CCE86454.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
S + KR + KKDP+ PKR SA+ F E R + ENP ++ VGK G KWK+M
Sbjct: 2 STTEKKRASRKKKDPDAPKRSLSAYMFFANENRDIVRAENPGIS-FGQVGKLLGEKWKAM 60
Query: 98 S 98
S
Sbjct: 61 S 61
>gi|402882719|ref|XP_003904882.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Papio anubis]
Length = 132
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 31 TAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA 90
T + D G + GK K DPN PKRP S FF+F EF K NP ++ + V K
Sbjct: 11 TERKDYGPAKGGK-----KNDPNAPKRPLSGFFLFCSEFHPKMKSTNPGIS-IGDVAKKL 64
Query: 91 GGKWKSMS 98
G WK+++
Sbjct: 65 GEMWKNLN 72
>gi|149726074|ref|XP_001503141.1| PREDICTED: high mobility group protein B1-like [Equus caballus]
Length = 215
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYHPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|342874398|gb|EGU76412.1| hypothetical protein FOXB_13090 [Fusarium oxysporum Fo5176]
Length = 102
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
+G + + ++ K+ KKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK
Sbjct: 6 AGKRGKAEKTKRGKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKLLGERWK 64
Query: 96 SMS 98
+++
Sbjct: 65 ALN 67
>gi|45360483|ref|NP_988904.1| high mobility group box 2 [Xenopus (Silurana) tropicalis]
gi|38181929|gb|AAH61601.1| high-mobility group box 2 [Xenopus (Silurana) tropicalis]
Length = 212
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKRPPSAFF+F E R K E+P ++ + K G W +P
Sbjct: 92 DPNAPKRPPSAFFLFCSEHRPQIKSESPGLS-IGDTAKKLGEMWSEQTP 139
>gi|167384542|ref|XP_001736998.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165900416|gb|EDR26737.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 112
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
PN+PKRP + +F++L E R + K+E+P+ V+ + K A +WK++
Sbjct: 23 PNRPKRPQTPYFLYLHEHRASIKEEHPDA-KVTEIAKIASEQWKAL 67
>gi|449706836|gb|EMD46596.1| HMG (high mobility group) box domain containing protein, putative
[Entamoeba histolytica KU27]
Length = 80
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
PN+PKRPP+ +F++L E R + K+E+P++ + + K A +WK
Sbjct: 26 PNRPKRPPTPYFIYLNEHRASIKEEHPDI-RFTEISKVASEQWK 68
>gi|429860623|gb|ELA35353.1| nucleosome binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 103
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 42 GKREKK-AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GK EKK KKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++
Sbjct: 12 GKVEKKRGKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKILGERWKALN 68
>gi|297798364|ref|XP_002867066.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297312902|gb|EFH43325.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 125
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 53/82 (64%), Gaps = 5/82 (6%)
Query: 17 LKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKE 76
+K N +V R D K +G + K KDPNKPK+PPS FFVFL++FR+ F
Sbjct: 1 MKDNQTEVESRST-----DDRLKVRGNKGGKKTKDPNKPKKPPSPFFVFLDDFRREFNLA 55
Query: 77 NPNVTAVSAVGKAAGGKWKSMS 98
NP+ +V++VGKAAG KWKSM+
Sbjct: 56 NPDNKSVASVGKAAGKKWKSMT 77
>gi|444706303|gb|ELW47646.1| Glycine/arginine-rich protein 1 [Tupaia chinensis]
Length = 485
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN PKRPPSAFF+F E+R KE+P ++ + + K G W S +
Sbjct: 35 KDPNAPKRPPSAFFLFCSEYRPKI-KEHPGLS-IGDIAKKLGELWTSTA 81
>gi|183212221|gb|ACC54773.1| high-mobility group box 1 beta [Xenopus borealis]
Length = 95
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F +FR K E P T + + K G W
Sbjct: 34 KKKFKDPNAPKRPPSAFFLFCSDFRPKIKGEYPGST-IGDIAKKLGEMW 81
>gi|407262070|ref|XP_003945989.1| PREDICTED: high mobility group protein B1-like [Mus musculus]
Length = 213
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 43 KREKKAK-KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KRE K K KDPN PKRPPSAFF+F +R K E+P ++ + V K G W
Sbjct: 82 KRETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGLS-IGDVAKKRGEMW 133
>gi|401624308|gb|EJS42370.1| abf2p [Saccharomyces arboricola H-6]
Length = 183
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
PKRP SA+F+FL++ R F KENP + + + K AG KW+++ +
Sbjct: 43 PKRPTSAYFLFLQDHRSQFVKENPTLRP-AEISKVAGEKWQTLDAGI 88
>gi|307204835|gb|EFN83393.1| FACT complex subunit Ssrp1 [Harpegnathos saltator]
Length = 737
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+KD NKPKRPP+AF ++L R++ K +NP + AV+ + K G W+ +
Sbjct: 543 EKDTNKPKRPPTAFMLWLNNARESIKADNPGI-AVTEIAKKGGEMWREL 590
>gi|296200444|ref|XP_002747606.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 210
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDP+ PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPSAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|3551257|dbj|BAA32827.1| 98b [Daucus carota]
Length = 502
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 14 QEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKK---DPNKPKRPPSAFFVFLEEFR 70
QEA++ + K+K T L +K + ++++K +K DPNKPKRP S+F +F +E R
Sbjct: 379 QEAMQ-----LLKKKEKTENLIKKTKEERQKKQKGEKKIVDPNKPKRPASSFLLFSKEAR 433
Query: 71 KTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KT +E P + S + KWK +S
Sbjct: 434 KTISEERPGINN-STLNALISVKWKEIS 460
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
P KPK P SAFF+F+ E R E NV VGK G +WK+M+
Sbjct: 287 PLKPKHPVSAFFLFMNERRADLVAEKKNVL---EVGKITGEEWKNMT 330
>gi|119491564|ref|XP_001263303.1| nucleosome binding protein (Nhp6a), putative [Neosartorya
fischeri NRRL 181]
gi|119411463|gb|EAW21406.1| nucleosome binding protein (Nhp6a), putative [Neosartorya
fischeri NRRL 181]
Length = 104
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
+ ++ + KR ++ KKDPN PKR SA+ F E R ++ENP ++ VGK G +WK
Sbjct: 6 TSTRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGIS-FGQVGKMLGERWK 64
Query: 96 SMS 98
++S
Sbjct: 65 ALS 67
>gi|71024155|ref|XP_762307.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
gi|46101812|gb|EAK87045.1| hypothetical protein UM06160.1 [Ustilago maydis 521]
Length = 534
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
SK Q ++EK+ + DP+ PKRPPSA+ +F E R+ +K++P + +GK + WK++
Sbjct: 281 SKLQKRKEKRLR-DPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKVSEA-WKAL 338
Query: 98 S 98
+
Sbjct: 339 T 339
>gi|82952271|ref|XP_889413.1| PREDICTED: high mobility group protein B1-like isoform 2 [Mus
musculus]
gi|407263905|ref|XP_003945567.1| PREDICTED: high mobility group protein B1-like isoform 1 [Mus
musculus]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 43 KREKKAK-KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KRE K K KDPN PKRPPSAFF+F +R K E+P ++ + V K G W
Sbjct: 82 KRETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGLS-IGDVAKKRGEMW 133
>gi|444728198|gb|ELW68662.1| High mobility group protein B1 [Tupaia chinensis]
Length = 132
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+R K E+P ++ V K G W + +
Sbjct: 12 KKKFKDPNAPKRPPSAFFLFCSEYRSKIKGEHPGLSN-GDVAKKLGEIWNNTA 63
>gi|356506416|ref|XP_003521979.1| PREDICTED: FACT complex subunit SSRP1-like [Glycine max]
Length = 614
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 35 DSGSKRQ--GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGG 92
DSG +++ K+E +KDPN PKR S F F + R+ KK NP + + + VG+ G
Sbjct: 508 DSGDEKEKPAKKESNKEKDPNAPKRAMSGFMFFSKLERENLKKTNPGI-SFTDVGRVLGE 566
Query: 93 KWKSMS 98
KWK +S
Sbjct: 567 KWKKLS 572
>gi|448530095|ref|XP_003869985.1| Nhp6a non-histone chromatin component [Candida orthopsilosis Co
90-125]
gi|354547725|emb|CCE44460.1| hypothetical protein CPAR2_402610 [Candida parapsilosis]
gi|380354339|emb|CCG23854.1| Nhp6a non-histone chromatin component [Candida orthopsilosis]
Length = 93
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G KR+ R+KK DP+ PKR SA+ F E R + ENP ++ VGKA G KWK+
Sbjct: 5 GEKRKVSRKKK---DPDAPKRSLSAYMFFANENRDIVRAENPGIS-FGQVGKALGDKWKA 60
Query: 97 MS 98
+S
Sbjct: 61 LS 62
>gi|302926833|ref|XP_003054372.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
gi|256735313|gb|EEU48659.1| HMG box-containing protein [Nectria haematococca mpVI 77-13-4]
Length = 101
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+ KKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++
Sbjct: 15 KRGKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKLLGERWKALN 66
>gi|349804477|gb|AEQ17711.1| putative high mobility group protein-1 [Hymenochirus curtipes]
Length = 143
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F +FR K E+P +T + V K G W
Sbjct: 84 KKKFKDPNAPKRPPSAFFLFCSDFR--IKGEHPGLT-IGDVAKKLGEMW 129
>gi|389626627|ref|XP_003710967.1| non-histone chromosomal protein 6 [Magnaporthe oryzae 70-15]
gi|78192124|gb|ABB30152.1| nonhistone protein 6 [Magnaporthe grisea]
gi|291195731|gb|ADD84582.1| nonhistone chromosomal protein 6B [Magnaporthe oryzae]
gi|351650496|gb|EHA58355.1| non-histone chromosomal protein 6 [Magnaporthe oryzae 70-15]
gi|440463464|gb|ELQ33044.1| nucleosome binding protein [Magnaporthe oryzae Y34]
gi|440481294|gb|ELQ61893.1| nucleosome binding protein [Magnaporthe oryzae P131]
Length = 101
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
++AKKDP PKR SA+ F E R ++ENP VT VGK G +WK++S
Sbjct: 15 RRAKKDPMAPKRGLSAYMFFANEQRDNVREENPGVT-FGQVGKILGERWKALS 66
>gi|326437020|gb|EGD82590.1| hypothetical protein PTSG_03243 [Salpingoeca sp. ATCC 50818]
Length = 210
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+G R +K KKDPN PK+P SA+FVF E R + + P VS K G +W+ M+
Sbjct: 124 EGGRRRKKKKDPNAPKKPKSAYFVFAETRRDALRAQYPE-DRVSDTAKRTGEEWRGMT 180
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPNKP+ + + F +E R +++PN + V+ V K G +W+ ++
Sbjct: 45 DPNKPRGALTPYMCFNKEVRPAIMQQHPNAS-VTEVAKLIGAQWRQLT 91
>gi|19923236|ref|NP_003104.2| nuclear autoantigen Sp-100 isoform 2 [Homo sapiens]
gi|13878931|sp|P23497.3|SP100_HUMAN RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Lysp100b;
AltName: Full=Nuclear dot-associated Sp100 protein;
AltName: Full=Speckled 100 kDa
gi|3252911|gb|AAC39790.1| SP100-HMG nuclear autoantigen [Homo sapiens]
gi|119591334|gb|EAW70928.1| SP100 nuclear antigen, isoform CRA_b [Homo sapiens]
Length = 879
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPN PKRPP AFF+F E+R K E+P ++ V K A G W + + A
Sbjct: 765 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLA-GMWNNTAAA 813
>gi|74138677|dbj|BAE27155.1| unnamed protein product [Mus musculus]
Length = 215
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K ++P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGKHPGLS-IGDVAKKLGEMW 133
>gi|110766132|ref|XP_001120264.1| PREDICTED: FACT complex subunit Ssrp1 [Apis mellifera]
Length = 728
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+KD NKPKRPP+AF ++L R+ K ENP + AV+ + K G W+ +
Sbjct: 543 EKDTNKPKRPPTAFMMWLNSARERIKAENPGI-AVTEIAKKGGEMWREL 590
>gi|70999478|ref|XP_754458.1| nucleosome binding protein (Nhp6a) [Aspergillus fumigatus Af293]
gi|74674416|sp|Q4WY33.1|NHP6_ASPFU RecName: Full=Non-histone chromosomal protein 6
gi|66852095|gb|EAL92420.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
Af293]
gi|159127475|gb|EDP52590.1| nucleosome binding protein (Nhp6a), putative [Aspergillus fumigatus
A1163]
Length = 104
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
+ ++ + KR ++ KKDPN PKR SA+ F E R ++ENP ++ VGK G +WK
Sbjct: 6 TSTRTKTKRVERKKKDPNAPKRGLSAYMFFANENRDKVREENPGIS-FGQVGKMLGERWK 64
Query: 96 SMSPA 100
++S +
Sbjct: 65 ALSDS 69
>gi|302309760|ref|XP_002999554.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049084|emb|CAR57991.1| unnamed protein product [Candida glabrata]
Length = 93
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKR SA+ F E R + ENP+VT +G+ G +WK+++
Sbjct: 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDVT-FGQIGRLLGERWKALT 63
>gi|395732940|ref|XP_002813012.2| PREDICTED: nuclear autoantigen Sp-100-like [Pongo abelii]
Length = 263
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPN PKRPP AFF+F E+R K E+P ++ V K A G W + + A
Sbjct: 150 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLA-GMWNNTAAA 198
>gi|392300930|gb|EIW12019.1| Nhp6bp [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 162
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + KKDPN PKR SA+ F E R + ENP+VT VG+ G +WK+++
Sbjct: 78 KRTTRRKKDPNAPKRGLSAYMFFANENRDIVRSENPDVT-FGQVGRILGERWKALT 132
>gi|40352857|gb|AAH64790.1| Hmgb1 protein [Mus musculus]
Length = 215
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPP AFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|426215132|ref|XP_004001831.1| PREDICTED: high mobility group protein B4 [Ovis aries]
Length = 196
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ G+R+K+ K+DP+ P+RPPS+F +F ++ K ENP+ + V
Sbjct: 64 ALAKLDKARYQEEMMNYLGRRKKRRKRDPHAPRRPPSSFLLFCQDHYAQLKSENPSWSVV 123
Query: 84 SAVGKAAGGKW 94
V KA+G W
Sbjct: 124 Q-VAKASGKMW 133
>gi|62822330|gb|AAY14879.1| unknown [Homo sapiens]
Length = 843
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPN PKRPP AFF+F E+R K E+P ++ V K A G W + + A
Sbjct: 729 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLA-GMWNNTAAA 777
>gi|171680363|ref|XP_001905127.1| hypothetical protein [Podospora anserina S mat+]
gi|170939808|emb|CAP65034.1| unnamed protein product [Podospora anserina S mat+]
Length = 98
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+ KKDPN PKR SA+ F E R+ ++ENP V+ VGK G +WK++S
Sbjct: 18 RGKKDPNAPKRGLSAYMFFANEQRENVREENPGVS-FGQVGKILGERWKALS 68
>gi|67968790|dbj|BAE00752.1| unnamed protein product [Macaca fascicularis]
Length = 191
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP P+RPPS+F +F ++ K+ENP+ + V
Sbjct: 64 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPSWSVV 123
Query: 84 SAVGKAAGGKW 94
V KA G W
Sbjct: 124 Q-VAKATGKMW 133
>gi|119591335|gb|EAW70929.1| SP100 nuclear antigen, isoform CRA_c [Homo sapiens]
Length = 844
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPN PKRPP AFF+F E+R K E+P ++ V K A G W + + A
Sbjct: 730 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLA-GMWNNTAAA 778
>gi|401839076|gb|EJT42436.1| NHP6A-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 93
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKR SA+ F E R + ENP++T VGK G KWK+++P
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTP 64
>gi|291415754|ref|XP_002724114.1| PREDICTED: high-mobility group box 2-like [Oryctolagus cuniculus]
Length = 234
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFF+F E R K E+P ++ + K G W S
Sbjct: 115 DPNAPKRPPSAFFLFCSEHRPEIKSEHPGLS-IGDTAKKLGEMWSEQS 161
>gi|255936601|ref|XP_002559327.1| Pc13g09020 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583947|emb|CAP91971.1| Pc13g09020 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 108
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR ++ KKDPN PKR SA+ F + R ++ENP ++ VGK G KWK++S
Sbjct: 16 KRVQRRKKDPNAPKRGLSAYMFFANDNRDKVREENPGIS-FGQVGKQLGDKWKALS 70
>gi|401623234|gb|EJS41340.1| nhp6ap [Saccharomyces arboricola H-6]
Length = 93
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKR SA+ F E R + ENP++T VGK G KWK+++P
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTP 64
>gi|388857581|emb|CCF48730.1| related to NHP6B-nonhistone chromosomal protein [Ustilago hordei]
Length = 253
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
SK Q ++EK+ + DP+ PKRPPSA+ +F E R+ +K++P + +GK + WK++
Sbjct: 158 SKLQKRKEKRLR-DPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKVSEA-WKAL 215
Query: 98 S 98
+
Sbjct: 216 T 216
>gi|351710199|gb|EHB13118.1| High mobility group protein B3 [Heterocephalus glaber]
Length = 191
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KKDPN KRPPS FF+F EF K NP ++ + V K G W +++
Sbjct: 85 KKKKDPNATKRPPSGFFLFCSEFHPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
>gi|151942838|gb|EDN61184.1| nonhistone chromosomal protein [Saccharomyces cerevisiae YJM789]
gi|190407991|gb|EDV11256.1| 11 kDa nonhistone chromosomal protein [Saccharomyces cerevisiae
RM11-1a]
gi|256268928|gb|EEU04275.1| Nhp6ap [Saccharomyces cerevisiae JAY291]
gi|259150205|emb|CAY87008.1| Nhp6ap [Saccharomyces cerevisiae EC1118]
gi|349581863|dbj|GAA27020.1| K7_Nhp6ap [Saccharomyces cerevisiae Kyokai no. 7]
Length = 93
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKR SA+ F E R + ENP++T VGK G KWK+++P
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTP 64
>gi|402853838|ref|XP_003891595.1| PREDICTED: high mobility group protein B4 [Papio anubis]
Length = 191
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP P+RPPS+F +F ++ K+ENP+ + V
Sbjct: 64 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPSWSVV 123
Query: 84 SAVGKAAGGKW 94
V KA G W
Sbjct: 124 Q-VAKATGKMW 133
>gi|255087726|ref|XP_002505786.1| histone chaperone [Micromonas sp. RCC299]
gi|226521056|gb|ACO67044.1| histone chaperone [Micromonas sp. RCC299]
Length = 643
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
DPN+PKRP SAF +F +E R ++NP+ A+ VGK G +W+ + P +
Sbjct: 547 DPNEPKRPLSAFMIFSKETRGDVLEKNPDF-ALGDVGKELGRRWREIDPEL 596
>gi|109001746|ref|XP_001107984.1| PREDICTED: high mobility group protein B4-like [Macaca mulatta]
gi|67968844|dbj|BAE00779.1| unnamed protein product [Macaca fascicularis]
Length = 191
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR+K+ K+DP P+RPPS+F +F ++ K+ENP+ + V
Sbjct: 64 ALAKLDKARYQEEMMNYVGKRKKRRKRDPQAPRRPPSSFLLFCQDHYAQLKRENPSWSVV 123
Query: 84 SAVGKAAGGKW 94
V KA G W
Sbjct: 124 Q-VAKATGKMW 133
>gi|449500530|ref|XP_002187513.2| PREDICTED: high mobility group protein B2 [Taeniopygia guttata]
Length = 145
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFF+F E R K E+P ++ + K G W S
Sbjct: 40 DPNAPKRPPSAFFLFCSEHRPKIKNEHPGLS-IGDTAKKLGEMWSEQS 86
>gi|255537735|ref|XP_002509934.1| transcription factor, putative [Ricinus communis]
gi|223549833|gb|EEF51321.1| transcription factor, putative [Ricinus communis]
Length = 514
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 14 QEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTF 73
QEAL+ + K+K T + +K +++K+ DPNKPK+P S+F +F +E RK
Sbjct: 400 QEALQ-----LLKKKEKTDNMIKKTKENRQKKKQQNVDPNKPKKPASSFLIFSKEARKNL 454
Query: 74 KKENPNVTAVSAVGKAAGGKWKSMS 98
+E P V S + KWK +S
Sbjct: 455 AQERP-VINNSTLNALISVKWKELS 478
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP KPK+P SAFF+F E R + EN N V V K AG +WK+M+
Sbjct: 307 DPLKPKQPMSAFFLFSNERRASLLAENKN---VREVAKIAGEQWKNMT 351
>gi|6325309|ref|NP_015377.1| Nhp6ap [Saccharomyces cerevisiae S288c]
gi|128182|sp|P11632.1|NHP6A_YEAST RecName: Full=Non-histone chromosomal protein 6A
gi|24987379|pdb|1J5N|A Chain A, Solution Structure Of The Non-Sequence-Specific Hmgb
Protein Nhp6a In Complex With Sry Dna
gi|24987655|pdb|1LWM|A Chain A, Solution Structure Of The Sequence-Non-Specific Hmgb
Protein Nhp6a
gi|4034|emb|CAA33377.1| unnamed protein product [Saccharomyces cerevisiae]
gi|171883|gb|AAA34754.1| high mobility group non-histone protein [Saccharomyces
cerevisiae]
gi|805034|emb|CAA89171.1| Nhp6ap [Saccharomyces cerevisiae]
gi|1314122|emb|CAA94998.1| Nhp6ap [Saccharomyces cerevisiae]
gi|51013911|gb|AAT93249.1| YPR052C [Saccharomyces cerevisiae]
gi|285815583|tpg|DAA11475.1| TPA: Nhp6ap [Saccharomyces cerevisiae S288c]
gi|392296063|gb|EIW07166.1| Nhp6ap [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 93
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKR SA+ F E R + ENP++T VGK G KWK+++P
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTP 64
>gi|385302209|gb|EIF46351.1| nucleosome binding protein [Dekkera bruxellensis AWRI1499]
Length = 91
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
G++ + KKDPN PKR SA+ F E R + ENP + A +GK G KWK++
Sbjct: 2 GRKGTRKKKDPNAPKRSLSAYMFFANEQRDIVRAENPGI-AFGQIGKILGEKWKALD 57
>gi|448084218|ref|XP_004195549.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
gi|359376971|emb|CCE85354.1| Piso0_004944 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
S + KR + KKDP+ PKR SA+ F E R + ENP ++ VGK G KWK+M
Sbjct: 2 STTEKKRASRKKKDPDAPKRSLSAYMFFANENRDIVRAENPGIS-FGQVGKLLGEKWKAM 60
Query: 98 S 98
+
Sbjct: 61 T 61
>gi|338712138|ref|XP_001497140.3| PREDICTED: FACT complex subunit SSRP1 [Equus caballus]
Length = 680
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ E K KDPN PKRP SA+ ++L R+ K ++P ++ ++ + K AG WK MS
Sbjct: 532 RKKPMEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGIS-ITDLSKKAGEIWKGMS 589
>gi|334348387|ref|XP_003342057.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group protein B3
[Monodelphis domestica]
Length = 208
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KD N PK PPS FF+F EFR K NP ++ + V K G W ++S
Sbjct: 88 KDSNAPKHPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLS 135
>gi|332025514|gb|EGI65677.1| FACT complex subunit Ssrp1 [Acromyrmex echinatior]
Length = 721
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+R+ K ++D NKPKRPPSAF ++L R + K +NP + +++ + K G W+ +
Sbjct: 526 QRKSKKERDENKPKRPPSAFMLWLSSARDSIKADNPGL-SITDIAKKGGEMWREL 579
>gi|444730168|gb|ELW70558.1| High mobility group protein B3 [Tupaia chinensis]
Length = 369
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRP S FF+F EFR K NP ++ + V K G W ++S
Sbjct: 89 DPNAPKRPLSGFFLFSSEFRPKIKSTNPGIS-IGDVAKKLGDMWNNLS 135
>gi|6435676|pdb|1CG7|A Chain A, Hmg Protein Nhp6a From Saccharomyces Cerevisiae
Length = 93
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKR SA+ F E R + ENP++T VGK G KWK+++P
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDIT-FGQVGKKLGEKWKALTP 64
>gi|427784853|gb|JAA57878.1| Putative transcription factor [Rhipicephalus pulchellus]
Length = 211
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
P PKRPPS F +F + RKT KENP +T + KA GKWK+
Sbjct: 52 PPAPKRPPSGFILFAADTRKTVLKENPALTPTEVI-KAVAGKWKT 95
>gi|18653894|gb|AAL77438.1|L79988_1 nuclear autoantigen, partial [Homo sapiens]
Length = 403
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
DPN PKRPP AFF+F E+R K E+P ++ V K AG
Sbjct: 289 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 329
>gi|343427904|emb|CBQ71429.1| related to NHP6B-nonhistone chromosomal protein [Sporisorium
reilianum SRZ2]
Length = 252
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 37/56 (66%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR++K +DP+ PKRPPSA+ +F E R+ +K++P + +GK + WK+++
Sbjct: 161 KRKEKRLRDPDAPKRPPSAYLLFQNEVRQEIRKKHPGMPYSEVLGKVSEA-WKALT 215
>gi|444518919|gb|ELV12461.1| High mobility group protein B3 [Tupaia chinensis]
Length = 185
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G + GK+ K+DPN PKRPPS FF+F EF + NP ++ + V K G W
Sbjct: 77 DYGPAKGGKK----KRDPNAPKRPPSGFFLFCSEFCPKIRSNNPGIS-IGDVAKKLGEMW 131
Query: 95 KSMS 98
+ S
Sbjct: 132 NNKS 135
>gi|427794389|gb|JAA62646.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 604
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K +D NKPKRP +AF +F+ +FRK + P V+A+ K G +W+SMS
Sbjct: 250 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPE-GGVAALAKLGGERWRSMS 300
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
PKR +A+ F + +R+ KK + + GK GKW +MS
Sbjct: 181 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMS 224
>gi|291392907|ref|XP_002712835.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 208
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYCPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|409075858|gb|EKM76234.1| hypothetical protein AGABI1DRAFT_16670, partial [Agaricus
bisporus var. burnettii JB137-S8]
gi|426193694|gb|EKV43627.1| hypothetical protein AGABI2DRAFT_56560, partial [Agaricus
bisporus var. bisporus H97]
Length = 106
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K+KKDP PKR SA+ F +++R+ K ENP VGK G KWK M
Sbjct: 14 RKSKKDPKAPKRALSAYMFFSQDWRERIKTENPEA-GFGEVGKLLGAKWKEMD 65
>gi|226479042|emb|CAX73016.1| structure specific recognition protein 1 [Schistosoma japonicum]
Length = 679
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
SKRQ K+++K K DPN P RP SA+F++ E R+ K +V+ V KA G W++
Sbjct: 578 SSKRQTKKQEKPK-DPNAPTRPLSAYFLWFNENREKIAKSLSGQNSVAEVAKAGGELWRN 636
Query: 97 M 97
M
Sbjct: 637 M 637
>gi|50304233|ref|XP_452066.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636989|sp|Q6CVH3.1|NHP6_KLULA RecName: Full=Non-histone chromosomal protein 6
gi|49641198|emb|CAH02459.1| KLLA0B12056p [Kluyveromyces lactis]
Length = 93
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+ ++ KKDPN PKR SA+ F E R + ENP +T VG+ G KWK+++
Sbjct: 6 KKTQRKKKDPNAPKRALSAYMFFANENRDIVRAENPGIT-FGQVGRILGEKWKALN 60
>gi|344245608|gb|EGW01712.1| High mobility group protein B1 [Cricetulus griseus]
Length = 162
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+ K E P ++ + K G W S +
Sbjct: 35 KKKFKDPNAPKRPPSAFFLFCSEYHPKIKGERPGLS-IGDAAKKLGETWNSTA 86
>gi|157822723|ref|NP_001102933.1| high mobility group protein B4 [Rattus norvegicus]
gi|149023997|gb|EDL80494.1| rCG31445 [Rattus norvegicus]
Length = 181
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVF-LEEFRKTFKKENPNVTA 82
A AKLD ++ GKR K+ K+DP P++PPS+F +F L+ F K K+ENPN T
Sbjct: 62 AIAKLDKARYQEEMMNYVGKRRKRRKRDPLAPRKPPSSFLLFSLDHFAK-LKQENPNWTV 120
Query: 83 VSAVGKAAGGKWKSMS 98
V V KAAG W ++
Sbjct: 121 VQ-VAKAAGKMWSMIT 135
>gi|427793707|gb|JAA62305.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 529
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K +D NKPKRP +AF +F+ +FRK + P V+A+ K G +W+SMS
Sbjct: 271 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPE-GGVAALAKLGGERWRSMS 321
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
PKR +A+ F + +R+ KK + + GK GKW +MS
Sbjct: 202 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMS 245
>gi|320585897|gb|EFW98576.1| nucleosome-binding protein [Grosmannia clavigera kw1407]
Length = 94
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 42 GKREKK-AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GK EK+ +KKDPN PKR SA+ F E R+ + ENP ++ VGK G +WK+++
Sbjct: 11 GKVEKRRSKKDPNAPKRGLSAYMFFANEQRENVRDENPGIS-FGQVGKILGERWKALN 67
>gi|260803411|ref|XP_002596583.1| hypothetical protein BRAFLDRAFT_154496 [Branchiostoma floridae]
gi|229281842|gb|EEN52595.1| hypothetical protein BRAFLDRAFT_154496 [Branchiostoma floridae]
Length = 710
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
KKDPN PK+ +AF ++L R +KENP+ + + +GK AG KW+ M P+
Sbjct: 541 KKDPNAPKKAMTAFMLWLNATRSELRKENPDAS-IGEIGKIAGEKWREMGPS 591
>gi|148668459|gb|EDL00778.1| mCG116117 [Mus musculus]
Length = 244
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 43 KREKKAK-KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KRE K K KDPN PKRPPSAFF+F +R K E+P ++ + V K G W
Sbjct: 82 KRETKKKFKDPNAPKRPPSAFFLFCSGYRPKIKGEHPGLS-IGDVAKKRGEMW 133
>gi|367012149|ref|XP_003680575.1| hypothetical protein TDEL_0C04750 [Torulaspora delbrueckii]
gi|359748234|emb|CCE91364.1| hypothetical protein TDEL_0C04750 [Torulaspora delbrueckii]
Length = 93
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKR SA+ F E R + ENP+VT VG+ G +WK+++P
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRSENPDVT-FGQVGRLLGERWKALTP 64
>gi|440631791|gb|ELR01710.1| non-histone chromosomal protein 6 [Geomyces destructans 20631-21]
Length = 101
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R +K KKDPN PKR SA+ F +E R ++ENP ++ VGK G +WK+++
Sbjct: 14 RGEKKKKDPNAPKRGLSAYMFFAQEQRDNVREENPGIS-FGQVGKVLGERWKALN 67
>gi|427793709|gb|JAA62306.1| Putative dorsal switch protein 1, partial [Rhipicephalus
pulchellus]
Length = 640
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K +D NKPKRP +AF +F+ +FRK + P V+A+ K G +W+SMS
Sbjct: 286 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPE-GGVAALAKLGGERWRSMS 336
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
PKR +A+ F + +R+ KK + + GK GKW +MS
Sbjct: 217 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMS 260
>gi|94966915|ref|NP_001035652.1| high mobility group protein B4 [Bos taurus]
gi|119370723|sp|Q32L34.1|HMGB4_BOVIN RecName: Full=High mobility group protein B4
gi|81673105|gb|AAI09791.1| High-mobility group box 4 [Bos taurus]
gi|296488916|tpg|DAA31029.1| TPA: high mobility group protein B4 [Bos taurus]
Length = 194
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 7/71 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ G+R+K+ K+DP+ P+RPPS+F +F ++ K ENP+ + V
Sbjct: 62 ALAKLDKARYQEEMMNYFGRRKKRRKRDPHAPRRPPSSFLLFCQDHYAQLKSENPSWSVV 121
Query: 84 SAVGKAAGGKW 94
V KA+G W
Sbjct: 122 Q-VAKASGKMW 131
>gi|23396868|sp|Q9N1Q6.1|SP100_GORGO RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Nuclear
dot-associated Sp100 protein; AltName: Full=Speckled 100
kDa
gi|7239185|gb|AAF43109.1|AF169947_1 SP100-HMG nuclear autoantigen, partial [Gorilla gorilla]
Length = 225
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
DPN PKRPP AFF+F E+R K E+P ++ V K AG
Sbjct: 114 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 154
>gi|444511434|gb|ELV09880.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+ K + P ++ +S + K G W
Sbjct: 43 KKKFKDPNAPKRPPSAFFLFCSEYCPEIKGDYPGLS-ISDIAKKLGEMW 90
>gi|432117313|gb|ELK37700.1| Putative high mobility group protein B3-like protein [Myotis
davidii]
Length = 147
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102
KK+PN PKRP S FF+F EFR K NP +++ V K G W ++S + S
Sbjct: 86 KKEPNVPKRPTSGFFLFCSEFRPKIKSTNPG-SSIGDVAKKLGEMWNNLSDSES 138
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMS 98
AK DP KP+ SA+ F++ R+ KK+NP V + + K +WK+MS
Sbjct: 2 AKSDPKKPQGKMSAYAFFVQTCREEHKKKNPEVPVSFAEFSKKCSERWKTMS 53
>gi|395830755|ref|XP_003788484.1| PREDICTED: high mobility group protein B1-like [Otolemur
garnettii]
Length = 135
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN P RPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 12 KKKFKDPNAPNRPPSAFFLFCSEYHPEIKGEHPGLS-IGDVAKKLGEMW 59
>gi|355563197|gb|EHH19759.1| hypothetical protein EGK_02478, partial [Macaca mulatta]
Length = 121
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 23 KVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA 82
K K T + D G + GK DPN PKRP S FF+F EF K NP ++
Sbjct: 3 KADKVHNDTERKDYGPAKGGKN-----NDPNAPKRPLSGFFLFCSEFHPKMKSTNPGIS- 56
Query: 83 VSAVGKAAGGKWKSMS 98
+ V K G WK+++
Sbjct: 57 IGDVAKKLGEMWKNLN 72
>gi|327268628|ref|XP_003219098.1| PREDICTED: high mobility group protein B2-like [Anolis
carolinensis]
Length = 209
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
K +KDPN PKRPPSAFF+F E R K ++P ++ + K G W
Sbjct: 85 KKRKDPNAPKRPPSAFFLFCSEHRPKIKSDHPGLS-IGDTAKKLGEMW 131
>gi|196119855|gb|ACG69451.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 155
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKR PSAFF+F E+R K E+P ++ + V K G W + +
Sbjct: 35 KKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTA 86
>gi|254580675|ref|XP_002496323.1| ZYRO0C15752p [Zygosaccharomyces rouxii]
gi|238939214|emb|CAR27390.1| ZYRO0C15752p [Zygosaccharomyces rouxii]
Length = 98
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKR SA+ F E R + ENP+VT VG+ G KWK+++P
Sbjct: 17 DPNAPKRALSAYMFFANENRDIVRAENPDVT-FGQVGRILGEKWKALTP 64
>gi|427780835|gb|JAA55869.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 508
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K +D NKPKRP +AF +F+ +FRK + P V+A+ K G +W+SMS
Sbjct: 250 KPARDANKPKRPGTAFMLFMGDFRKEMAGKEPE-GGVAALAKLGGERWRSMS 300
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
PKR +A+ F + +R+ KK + + GK GKW +MS
Sbjct: 181 PKRATTAYITFTQWYREEMKKSGRQIPRIGDFGKECAGKWNTMS 224
>gi|403286915|ref|XP_003934714.1| PREDICTED: high mobility group protein B1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286917|ref|XP_003934715.1| PREDICTED: high mobility group protein B1-like isoform 2 [Saimiri
boliviensis boliviensis]
gi|403286919|ref|XP_003934716.1| PREDICTED: high mobility group protein B1-like isoform 3 [Saimiri
boliviensis boliviensis]
gi|403286921|ref|XP_003934717.1| PREDICTED: high mobility group protein B1-like isoform 4 [Saimiri
boliviensis boliviensis]
Length = 206
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPP AFF+F E+R K E P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPLAFFLFCSEYRPKIKGEYPGLS-IGDVAKKLGEMW 133
>gi|361130747|gb|EHL02497.1| putative High mobility group protein 20A [Glarea lozoyensis 74030]
Length = 267
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 16/93 (17%)
Query: 19 PNDRKVGK-RKAATAKLD----------SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLE 67
P + + G+ +K++T+K D GSKR+ +R KA D N P+RPPSA+ +F
Sbjct: 100 PAEERTGEEQKSSTSKQDGKDRSGTGGPQGSKRKYRRHPKA--DENCPERPPSAYVIFSN 157
Query: 68 EFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
+ R+ K N + T ++ K G W++++PA
Sbjct: 158 KMREELKGRNLSFTEIA---KLVGENWQNLAPA 187
>gi|393215345|gb|EJD00836.1| hypothetical protein FOMMEDRAFT_51667, partial [Fomitiporia
mediterranea MF3/22]
Length = 61
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
KR +K KDPN P+RPPSA+ +F E R K NP + + K + +W M+P
Sbjct: 2 KRGEKKPKDPNAPRRPPSAYIIFQNEVRDEMKSINPGMVYHDVLNKIS-ERWSKMTP 57
>gi|440298682|gb|ELP91313.1| hypothetical protein EIN_153200 [Entamoeba invadens IP1]
Length = 185
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPNKPK+P +A+ ++L E R K++ P++ V+ V K AG WK+M
Sbjct: 96 DPNKPKKPQTAYMLYLNEHRAEIKEKFPDM-KVTEVAKKAGENWKAM 141
>gi|23396869|sp|Q9N1Q7.1|SP100_PANTR RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Nuclear
dot-associated Sp100 protein; AltName: Full=Speckled 100
kDa
gi|7239183|gb|AAF43108.1|AF169946_1 SP100-HMG nuclear autoantigen, partial [Pan troglodytes]
Length = 215
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
DPN PKRPP AFF+F E+R K E+P ++ V K AG
Sbjct: 120 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 160
>gi|299741148|ref|XP_001834261.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
gi|298404577|gb|EAU87573.2| non-histone chromosomal protein 6 [Coprinopsis cinerea
okayama7#130]
Length = 184
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
K+KKDP KPKR SA+ F +++R+ K ENP+ VGK G KWK +
Sbjct: 88 KSKKDPLKPKRALSAYMFFSQDWRERIKAENPDA-GFGEVGKLLGAKWKEL 137
>gi|148277100|ref|NP_081312.2| high mobility group protein B4 [Mus musculus]
gi|81892334|sp|Q6P8W9.1|HMGB4_MOUSE RecName: Full=High mobility group protein B4
gi|38174595|gb|AAH61030.1| High-mobility group box 4 [Mus musculus]
gi|148698295|gb|EDL30242.1| high-mobility group box 4 [Mus musculus]
Length = 181
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A A+LD +Q GKR K+ K+DP P++PPS+F +F + K+ENP+ T V
Sbjct: 62 ALAELDKARYQQEMMNYIGKRRKRRKRDPKAPRKPPSSFLLFSRDHYAMLKQENPDWTVV 121
Query: 84 SAVGKAAGGKWKSMSPA 100
V KAAG W + A
Sbjct: 122 Q-VAKAAGKMWSTTDEA 137
>gi|303289076|ref|XP_003063826.1| histone chaperone [Micromonas pusilla CCMP1545]
gi|226454894|gb|EEH52199.1| histone chaperone [Micromonas pusilla CCMP1545]
Length = 657
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRP S++ +F E R +E P ++ + +GKA G KWK M+
Sbjct: 553 DPNAPKRPLSSYMIFAGENRGKLVEETPGMS-IGEIGKALGAKWKEMT 599
>gi|332815636|ref|XP_003309551.1| PREDICTED: nuclear autoantigen Sp-100-like [Pan troglodytes]
Length = 205
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPN PKRPP AFF+F E+R K E+P ++ + V K G W + + A
Sbjct: 91 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLS-IDDVVKKLAGMWNNTAAA 139
>gi|392563521|gb|EIW56700.1| HMG-box [Trametes versicolor FP-101664 SS1]
gi|392563525|gb|EIW56704.1| HMG-box [Trametes versicolor FP-101664 SS1]
gi|392563535|gb|EIW56714.1| HMG-box [Trametes versicolor FP-101664 SS1]
Length = 116
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 23 KVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA 82
K KR+AAT K D K +GK KDP PKR SA+ F +++R+ K ENP+
Sbjct: 7 KTTKRRAAT-KQDKAPKAKGK------KDPKAPKRALSAYMFFSQDWRERIKAENPDA-G 58
Query: 83 VSAVGKAAGGKWKSMS 98
+GK G KWK +
Sbjct: 59 FGEIGKLLGAKWKELD 74
>gi|426338818|ref|XP_004033369.1| PREDICTED: nuclear autoantigen Sp-100-like [Gorilla gorilla
gorilla]
Length = 205
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
DPN PKRPP AFF+F E+R K E+P ++ V K AG
Sbjct: 91 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 131
>gi|427777853|gb|JAA54378.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 290
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
PKRPPS F +F + RKT KENP +T + KA GKWK+
Sbjct: 86 PKRPPSGFILFAADTRKTVLKENPALTPTEVI-KAVAGKWKT 126
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVT 81
P PKRPPS F +F + RKT KENP +T
Sbjct: 52 PPAPKRPPSGFILFAADTRKTVLKENPALT 81
>gi|354470970|ref|XP_003497717.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 215
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYCPKIKGEHPGLS-IGDVAKKLGELW 133
>gi|332847763|ref|XP_003315517.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan troglodytes]
gi|397485725|ref|XP_003813991.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 207
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 28 KAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVG 87
KA D K G + KKDPN PKRPPS FF+F EF K NP + + V
Sbjct: 65 KADKVHYDQEIKDYGPAKGGKKKDPNAPKRPPSGFFLFCSEFCPKSKSTNPGI-PIGDVA 123
Query: 88 KAAGGKWKSMS 98
K WK+++
Sbjct: 124 KKLSEMWKNLN 134
>gi|395856570|ref|XP_003800699.1| PREDICTED: high mobility group protein B1-like [Otolemur
garnettii]
Length = 161
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKR PSAFF+F E+R K E+P ++ + V K G W + +
Sbjct: 35 KKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTA 86
>gi|357139210|ref|XP_003571177.1| PREDICTED: high mobility group B protein 13-like [Brachypodium
distachyon]
Length = 537
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 3/50 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DP+KPK+P SA+FV+ +E R E N V +GK G +WKSM+ A
Sbjct: 325 DPSKPKQPMSAYFVYSQERRAALVAEKKN---VPEIGKITGEEWKSMTDA 371
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN+PK+P S+F +F +E RK +E P V S + KWK +S
Sbjct: 450 DPNRPKKPASSFLLFSKEARKQLVEERPGVNN-STINALISVKWKELS 496
>gi|344237192|gb|EGV93295.1| High mobility group protein B1 [Cricetulus griseus]
Length = 203
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 74 KKKFKDPNAPKRPPSAFFLFCSEYCPKIKGEHPGLS-IGDVAKKLGELW 121
>gi|296221849|ref|XP_002756934.1| PREDICTED: high mobility group protein B1-like [Callithrix jacchus]
Length = 203
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KD N PKRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 83 KKKFKDRNAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 130
>gi|270014157|gb|EFA10605.1| hypothetical protein TcasGA2_TC012866 [Tribolium castaneum]
Length = 840
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 44 REKKAKK--DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
R+K+AKK D NKPKRP +AF ++L E R K +NP + ++ + K G WK +
Sbjct: 668 RQKRAKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGI-KITEIAKKGGEMWKEL 722
>gi|444519462|gb|ELV12862.1| High mobility group protein B1 [Tupaia chinensis]
Length = 157
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDP+ PKRPPSAFF+F E+ K E+P+++ + K G W + +
Sbjct: 33 ETKKFKDPSAPKRPPSAFFLFCSEYHPQIKGEHPDIS-IRDAAKKLGEMWNNTA 85
>gi|309265997|ref|XP_003086707.1| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 433
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F + K E+P+++ + V K G W
Sbjct: 85 KKKFKDPNAPKRPPSAFFLFYSVYYPKIKGEHPDLS-IGDVAKKLGEMW 132
>gi|291410693|ref|XP_002721624.1| PREDICTED: high-mobility group box 1 [Oryctolagus cuniculus]
Length = 215
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKR PSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRTPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|109490746|ref|XP_001074778.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|392351213|ref|XP_003750876.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
Length = 211
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PK PPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKTPPSAFFLFCSEYRPKIKGEHPGLS-IGDVVKKLGEMW 133
>gi|169869341|ref|XP_001841237.1| hypothetical protein CC1G_11400 [Coprinopsis cinerea okayama7#130]
gi|116497705|gb|EAU80600.1| hypothetical protein CC1G_11400 [Coprinopsis cinerea okayama7#130]
Length = 255
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRP S++ +F E R K++NPN+T + KWK+M+
Sbjct: 73 DPNAPKRPASSYILFQNEVRNELKRQNPNLTNPELL-TLISEKWKNMT 119
>gi|91091374|ref|XP_973014.1| PREDICTED: similar to AGAP012335-PA [Tribolium castaneum]
Length = 712
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 3/56 (5%)
Query: 44 REKKAKK--DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
R+K+AKK D NKPKRP +AF ++L E R K +NP + ++ + K G WK +
Sbjct: 540 RQKRAKKSKDENKPKRPSTAFMLWLNEMRDKIKADNPGI-KITEIAKKGGEMWKEL 594
>gi|29290594|emb|CAD83017.1| bM168F16.1 (novel protein similar to high-mobility group box 1
(Hmgb1)) [Mus musculus]
gi|148699130|gb|EDL31077.1| mCG49535 [Mus musculus]
Length = 208
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKR PSAFF+F E+ K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRSPSAFFLFCSEYCHKIKGEHPGLS-IGVVAKKLGEMW 133
>gi|413923117|gb|AFW63049.1| putative phototropic-resoponsive NPH3 family protein [Zea mays]
Length = 425
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA 90
++K +KPKRP SAFFVF+ EFR+ ++ ++P +V+AV A
Sbjct: 279 KRKKVTTNSKPKRPTSAFFVFMSEFRQEYQVQHPGNKSVAAVSHLA 324
>gi|154284354|ref|XP_001542972.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|150406613|gb|EDN02154.1| nucleosome binding protein [Ajellomyces capsulatus NAm1]
gi|240273630|gb|EER37150.1| nucleosome binding protein [Ajellomyces capsulatus H143]
gi|325087527|gb|EGC40837.1| nucleosome binding protein [Ajellomyces capsulatus H88]
Length = 102
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K KKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++
Sbjct: 16 EKKKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKVLGERWKALN 67
>gi|37779034|gb|AAP20177.1| high mobility group protein [Pagrus major]
Length = 200
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F +FR K + P ++ + K G W S S
Sbjct: 85 KKRFKDPNAPKRPPSAFFLFCADFRPKVKGDYPGLS-IGDTAKKLGEMWNSSS 136
>gi|323307721|gb|EGA60984.1| Abf2p [Saccharomyces cerevisiae FostersO]
Length = 124
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
PKRP SA+F++L++ R F KENP + + + K AG KW+++ +
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNLEADI 88
>gi|7206622|gb|AAF39781.1| SP100-HMG [Homo sapiens]
Length = 181
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
DPN PKRPP AFF+F E+R K E+P ++ V K AG
Sbjct: 67 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLAG 107
>gi|239606992|gb|EEQ83979.1| nucleosome binding protein [Ajellomyces dermatitidis ER-3]
Length = 105
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R +K KKDPN PKR SA+ F E R ++ENP ++ VGK G +WK+++
Sbjct: 13 RGEKKKKDPNAPKRGLSAYMFFANEQRDNVREENPGIS-FGQVGKVLGERWKALN 66
>gi|261194046|ref|XP_002623428.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|239588442|gb|EEQ71085.1| nucleosome binding protein [Ajellomyces dermatitidis SLH14081]
gi|327354542|gb|EGE83399.1| nonhistone chromosomal protein 6A [Ajellomyces dermatitidis ATCC
18188]
Length = 101
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R +K KKDPN PKR SA+ F E R ++ENP ++ VGK G +WK+++
Sbjct: 13 RGEKKKKDPNAPKRGLSAYMFFANEQRDNVREENPGIS-FGQVGKVLGERWKALN 66
>gi|242781691|ref|XP_002479852.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|242781695|ref|XP_002479853.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|242781700|ref|XP_002479854.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218719999|gb|EED19418.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218720000|gb|EED19419.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
gi|218720001|gb|EED19420.1| nucleosome binding protein (Nhp6a), putative [Talaromyces
stipitatus ATCC 10500]
Length = 103
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
+K KKDPN PKR SA+ F E R+ + ENP + A A+G+ G WK +S A
Sbjct: 16 EKRKKDPNAPKRGLSAYMFFANENRERVRDENPGI-AFGALGRKLGELWKGLSDA 69
>gi|148226156|ref|NP_001084164.1| FACT complex subunit SSRP1 [Xenopus laevis]
gi|82175412|sp|Q9W602.1|SSRP1_XENLA RecName: Full=FACT complex subunit SSRP1; AltName: Full=DNA
unwinding factor 87 kDa subunit; Short=DUF87; AltName:
Full=Facilitates chromatin transcription complex subunit
ssrp1; AltName: Full=Structure-specific recognition
protein 1
gi|4586285|dbj|BAA76333.1| DUF87 [Xenopus laevis]
Length = 693
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDP PKRP SA+ ++L R+ K ENP + +++ + K AG WK+MS
Sbjct: 531 EAKKTKDPGAPKRPMSAYMLWLNASREKIKSENPGI-SITDLSKKAGEIWKNMS 583
>gi|159476440|ref|XP_001696319.1| high mobility group protein [Chlamydomonas reinhardtii]
gi|158282544|gb|EDP08296.1| high mobility group protein [Chlamydomonas reinhardtii]
Length = 179
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PK+P ++F F R++ K ENP + A VGK G KWK +S
Sbjct: 57 DPNAPKKPLTSFMYFSNAIRESVKSENPGI-AFGEVGKVIGEKWKGLS 103
>gi|62647362|ref|XP_575506.1| PREDICTED: high mobility group protein B1-like [Rattus norvegicus]
gi|293346835|ref|XP_001060814.2| PREDICTED: high mobility group protein B1-like isoform 1 [Rattus
norvegicus]
Length = 214
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN KRPPSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNALKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|402591482|gb|EJW85411.1| FACT complex subunit SSRP1-A [Wuchereria bancrofti]
Length = 684
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
G R +K KKDPN PK+P SA+F++ E +FKKE +VT + + AG WK +
Sbjct: 536 GSRREKKKKDPNAPKKPQSAYFIWFGENYSSFKKEGVSVTEAA---QRAGKMWKEID 589
>gi|67524855|ref|XP_660489.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|74597086|sp|Q5B995.1|NHP6_EMENI RecName: Full=Non-histone chromosomal protein 6
gi|40744280|gb|EAA63456.1| hypothetical protein AN2885.2 [Aspergillus nidulans FGSC A4]
gi|259486178|tpe|CBF83812.1| TPA: Non-histone chromosomal protein 6
[Source:UniProtKB/Swiss-Prot;Acc:Q5B995] [Aspergillus
nidulans FGSC A4]
Length = 106
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKR SA+ F + R ++ENP ++ VGK G KWKS+S
Sbjct: 21 KKDPNAPKRGLSAYMFFANDNRDKVREENPGIS-FGQVGKMLGEKWKSLS 69
>gi|195025405|ref|XP_001986052.1| GH21151 [Drosophila grimshawi]
gi|193902052|gb|EDW00919.1| GH21151 [Drosophila grimshawi]
Length = 744
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
KKD NKPKRP +AF ++L + R+ K++NP + V+ + K G WK +
Sbjct: 554 KKDSNKPKRPTTAFMLWLNDTREQIKRDNPGI-KVTEIAKKGGEMWKEL 601
>gi|42601334|gb|AAS21361.1| high mobility group protein 2 [Oikopleura dioica]
Length = 105
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+AKKDPN PKRP +AFF+F + R KK P + VS V K G WK +
Sbjct: 3 RAKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVAKKLGVMWKEV 53
>gi|224072172|ref|XP_002303636.1| high mobility group family [Populus trichocarpa]
gi|222841068|gb|EEE78615.1| high mobility group family [Populus trichocarpa]
Length = 480
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K +KDP KPK+P SAFF+F E R EN +V V K AG +WK+M+
Sbjct: 265 KKEKDPLKPKQPLSAFFLFCNERRAALLAENKSVL---EVAKIAGEEWKNMT 313
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPNKPK+P S+F +F +E RK+ E P + S + KWK ++
Sbjct: 394 DPNKPKKPASSFLLFSKETRKSLMDERPGINN-STLTAMISVKWKELN 440
>gi|313224350|emb|CBY20139.1| unnamed protein product [Oikopleura dioica]
Length = 91
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+AKKDPN PKRP +AFF+F + R KK P + VS V K G WK +
Sbjct: 3 RAKKDPNAPKRPQTAFFLFAADNRADAKKCLPEGSRVSEVAKKLGVMWKEVD 54
>gi|391638|dbj|BAA03261.1| ORF1 [Gallus gallus]
Length = 298
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ + E K KDPN PKRP SA+ ++L R+ K ++P ++ ++ + K AG WK+MS
Sbjct: 119 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGIS-ITDLSKKAGELWKAMS 176
>gi|225703820|gb|ACO07756.1| High mobility group protein B1 [Oncorhynchus mykiss]
Length = 193
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
++KK KDPN KRPPSAFF+F +FR K E+P ++ + K G W S
Sbjct: 83 QKKKRFKDPNALKRPPSAFFIFCADFRAKIKSEHPGLS-IGDTAKKLGVMWNS 134
>gi|383859589|ref|XP_003705276.1| PREDICTED: FACT complex subunit Ssrp1-like [Megachile rotundata]
Length = 740
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
++D NKPKRPP+AF ++L R+ K +NP + AV+ + K G W+ +
Sbjct: 543 ERDANKPKRPPTAFMIWLNSNREKIKADNPGI-AVTEIAKKGGEMWREL 590
>gi|403295522|ref|XP_003938690.1| PREDICTED: high mobility group protein B3-like [Saimiri boliviensis
boliviensis]
Length = 202
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN KRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 89 DPNASKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 135
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMS 98
AK DP KPK SA+ F++ R+ KK+NP V + K +WK+MS
Sbjct: 2 AKCDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 53
>gi|218117885|dbj|BAH03305.1| structure-specific recognition protein 1 [Gallus gallus]
Length = 706
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ + E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK+MS
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMS 587
>gi|57524786|ref|NP_001005796.1| FACT complex subunit SSRP1 [Gallus gallus]
gi|110283005|sp|Q04678.2|SSRP1_CHICK RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53128417|emb|CAG31300.1| hypothetical protein RCJMB04_4n20 [Gallus gallus]
Length = 706
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ + E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK+MS
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMS 587
>gi|60552474|gb|AAH91486.1| SSRP1 protein, partial [Homo sapiens]
Length = 633
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ E K KDPN PKRP SA+ ++L R+ K ++P ++ ++ + K AG WK MS
Sbjct: 532 RKKPVEVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGIS-ITDLSKKAGEIWKGMS 589
>gi|444526057|gb|ELV14266.1| High mobility group protein B1 [Tupaia chinensis]
Length = 166
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+ K E+P + + V K G W
Sbjct: 74 KKKFKDPNTPKRPPSAFFLFCSEYSPKIKGEHPGL-PIGDVTKKLGEMW 121
>gi|326920276|ref|XP_003206400.1| PREDICTED: FACT complex subunit SSRP1-like [Meleagris gallopavo]
Length = 706
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ + E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK+MS
Sbjct: 530 RKKQVESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMS 587
>gi|156843619|ref|XP_001644876.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
gi|156115528|gb|EDO17018.1| hypothetical protein Kpol_1065p34 [Vanderwaltozyma polyspora DSM
70294]
Length = 93
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR SA+ F E R K ENP+V+ VG+ G KWK+M+
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENPDVS-FGQVGRILGEKWKAMT 63
>gi|121705796|ref|XP_001271161.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
gi|119399307|gb|EAW09735.1| nucleosome binding protein (Nhp6a), putative [Aspergillus clavatus
NRRL 1]
Length = 104
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 36 SGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
+ ++ + KR ++ KKDPN PKR SA+ F + R ++ENP ++ VGK G +WK
Sbjct: 6 TSTRTKTKRVERKKKDPNAPKRGLSAYMFFANDNRDKVREENPGIS-FGQVGKMLGERWK 64
Query: 96 SMSPA 100
++S +
Sbjct: 65 ALSDS 69
>gi|26342222|dbj|BAC34773.1| unnamed protein product [Mus musculus]
Length = 215
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKR PSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|6323717|ref|NP_013788.1| Abf2p [Saccharomyces cerevisiae S288c]
gi|398988|sp|Q02486.1|ABF2_YEAST RecName: Full=ARS-binding factor 2, mitochondrial; Flags: Precursor
gi|763019|emb|CAA88797.1| Abf2p [Saccharomyces cerevisiae]
gi|2815294|emb|CAA11146.1| cisplatin-damaged DNA recognition protein CDRP1 [Saccharomyces
cerevisiae]
gi|45269826|gb|AAS56293.1| YMR072W [Saccharomyces cerevisiae]
gi|151946230|gb|EDN64461.1| ARS-binding factor [Saccharomyces cerevisiae YJM789]
gi|190408303|gb|EDV11568.1| ARS-binding factor 2, mitochondrial precursor [Saccharomyces
cerevisiae RM11-1a]
gi|207342356|gb|EDZ70142.1| YMR072Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256273496|gb|EEU08430.1| Abf2p [Saccharomyces cerevisiae JAY291]
gi|259148645|emb|CAY81890.1| Abf2p [Saccharomyces cerevisiae EC1118]
gi|285814075|tpg|DAA09970.1| TPA: Abf2p [Saccharomyces cerevisiae S288c]
gi|323303592|gb|EGA57383.1| Abf2p [Saccharomyces cerevisiae FostersB]
gi|323336275|gb|EGA77546.1| Abf2p [Saccharomyces cerevisiae Vin13]
gi|323347161|gb|EGA81436.1| Abf2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323353057|gb|EGA85357.1| Abf2p [Saccharomyces cerevisiae VL3]
gi|349580353|dbj|GAA25513.1| K7_Abf2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763798|gb|EHN05324.1| Abf2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392297232|gb|EIW08332.1| Abf2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 183
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
PKRP SA+F++L++ R F KENP + + + K AG KW+++ +
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNLEADI 88
>gi|225556517|gb|EEH04805.1| non-histone chromosomal protein 6 [Ajellomyces capsulatus G186AR]
Length = 102
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K KKDPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++
Sbjct: 16 EKKKKDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKVLGERWKALN 67
>gi|196010223|ref|XP_002114976.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
gi|190582359|gb|EDV22432.1| hypothetical protein TRIADDRAFT_64155 [Trichoplax adhaerens]
Length = 694
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
K +DPN PKRP S + ++L++ R K ENP+ T V+ V K AG WKS+
Sbjct: 547 KNARDPNLPKRPLSGYMLWLQKQRDRIKNENPSFT-VAEVAKKAGEIWKSL 596
>gi|478813|pir||S29857 nonhistone chromosomal protein HMG-1 - human
gi|184251|gb|AAA64970.1| HMG-1 [Homo sapiens]
Length = 216
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKR PSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|392879586|gb|AFM88625.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PKRPPS FF+F R ++E P ++ + + K G KW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGLS-IGDIAKKLGEKWNAM 152
>gi|387914724|gb|AFK10971.1| high mobility group box 1 [Callorhinchus milii]
Length = 226
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PKRPPS FF+F R ++E P ++ + + K G KW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGLS-IGDIAKKLGEKWNAM 152
>gi|392592827|gb|EIW82153.1| hypothetical protein CONPUDRAFT_122772 [Coniophora puteana
RWD-64-598 SS2]
Length = 341
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G R+ KRE K +KDPN PKRP SA+ +F + R +K NPN+ S + + +W +
Sbjct: 153 GDGRKRKREVK-EKDPNAPKRPASAYLLFQNQVRSKYKTANPNLPQ-SDLLQLISQQWSN 210
Query: 97 M 97
M
Sbjct: 211 M 211
>gi|353241760|emb|CCA73553.1| hypothetical protein PIIN_07506 [Piriformospora indica DSM 11827]
Length = 312
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN PKRPPSA+ ++ RK K +NP +T +G+ + W +S
Sbjct: 113 KDPNAPKRPPSAYLLYQNAIRKEIKDKNPTMTYAEVLGEIS-KMWSGLS 160
>gi|326918606|ref|XP_003205579.1| PREDICTED: high mobility group protein B2-like [Meleagris
gallopavo]
Length = 246
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFF+F E R K ++P ++ + K G W S
Sbjct: 129 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLS-IGDTAKKLGEMWSEQS 175
>gi|119584724|gb|EAW64320.1| hCG26831 [Homo sapiens]
Length = 212
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKR PSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRLPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|392876654|gb|AFM87159.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PKRPPS FF+F R ++E P ++ + + K G KW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGLS-IGDIAKKLGEKWNAM 152
>gi|449272347|gb|EMC82325.1| FACT complex subunit SSRP1 [Columba livia]
Length = 704
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P ++ ++ + K AG WK+MS
Sbjct: 535 ESKKGKDPNAPKRPMSAYMLWLNASRERIKSDHPGIS-ITDLSKKAGELWKAMS 587
>gi|392884154|gb|AFM90909.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PKRPPS FF+F R ++E P ++ + + K G KW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGLS-IGDIAKKLGEKWNAM 152
>gi|392878936|gb|AFM88300.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PKRPPS FF+F R ++E P ++ + + K G KW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGLS-IGDIAKKLGEKWNAM 152
>gi|392876858|gb|AFM87261.1| high mobility group protein [Callorhinchus milii]
gi|392878442|gb|AFM88053.1| high mobility group protein [Callorhinchus milii]
gi|392880194|gb|AFM88929.1| high mobility group protein [Callorhinchus milii]
gi|392881188|gb|AFM89426.1| high mobility group protein [Callorhinchus milii]
Length = 226
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PKRPPS FF+F R ++E P ++ + + K G KW +M
Sbjct: 107 DPNAPKRPPSGFFIFSAHLRPKIREECPGLS-IGDIAKKLGEKWNAM 152
>gi|307105669|gb|EFN53917.1| hypothetical protein CHLNCDRAFT_136125 [Chlorella variabilis]
Length = 101
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRP SA+ F + R KK +P+++ + VGKA G WK +S
Sbjct: 27 DPNAPKRPLSAYMYFASDKRVEMKKSDPSLS-LGEVGKATGAAWKELS 73
>gi|302851253|ref|XP_002957151.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
gi|300257558|gb|EFJ41805.1| hypothetical protein VOLCADRAFT_77427 [Volvox carteri f.
nagariensis]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
REKK K DPN PK+P A+ F ++ R+ K ENP ++ V+ +GK G WK +S
Sbjct: 14 REKKVK-DPNAPKKPLGAYMWFCKDMRERVKAENPGMS-VTDIGKRLGELWKEVS 66
>gi|225681708|gb|EEH19992.1| nucleosome binding protein [Paracoccidioides brasiliensis Pb03]
Length = 103
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K KKDPN PKR SA+ F E R ++ENP ++ VGK G +WK+++
Sbjct: 17 EKKKKDPNAPKRGLSAYMFFANEQRDNVREENPGIS-FGQVGKVLGERWKALN 68
>gi|211520|gb|AAA48685.1| HMG box (bp. 1499..1757), partial [Gallus gallus]
Length = 669
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ + E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK+MS
Sbjct: 493 RKKQVESKKGKDPNVPKRPMSAYMLWLNANREKIKSDHPGI-SITDLSKKAGELWKAMS 550
>gi|386783721|gb|AFJ24755.1| high mobility group-2 [Schmidtea mediterranea]
Length = 192
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
++ +++ K+ K+ KDPNKPK P +AFF F E R+T K++NP V + K G W
Sbjct: 78 ETDNRKPSKKAKREAKDPNKPKAPLTAFFFFSNEHRQTVKEKNPEFK-VGDIAKVLGKMW 136
>gi|295671102|ref|XP_002796098.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226284231|gb|EEH39797.1| nucleosome binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 103
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K KKDPN PKR SA+ F E R ++ENP ++ VGK G +WK+++
Sbjct: 17 EKKKKDPNAPKRGLSAYMFFANEQRDNVREENPGIS-FGQVGKVLGERWKALN 68
>gi|407263446|ref|XP_003084790.3| PREDICTED: uncharacterized protein LOC667284 [Mus musculus]
Length = 424
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPP AFF+F E+ K E+P ++ + V K G W
Sbjct: 95 KKKFKDPNAPKRPPLAFFLFYSEYYPKIKGEHPGLS-IGDVAKKLGEMW 142
>gi|238586980|ref|XP_002391336.1| hypothetical protein MPER_09251 [Moniliophthora perniciosa FA553]
gi|215455859|gb|EEB92266.1| hypothetical protein MPER_09251 [Moniliophthora perniciosa FA553]
Length = 269
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 7/64 (10%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D G KR K KDPN PKRP S++ ++ E R+T K+++PN++ + +W
Sbjct: 64 DEGGKR------KRTKDPNAPKRPASSYIIYQNEVRQTIKEQHPNLSPAE-IRTLISQEW 116
Query: 95 KSMS 98
MS
Sbjct: 117 AKMS 120
>gi|395847762|ref|XP_003796535.1| PREDICTED: high mobility group protein B3-like [Otolemur garnettii]
Length = 255
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Query: 23 KVGKRKAATAKLDSGSKRQGKREKKA--------KKDPNKPKRPPSAFFVFLEEFRKTFK 74
K GK K+ +++ K RE K KKDPN P RPPS F +F EF K
Sbjct: 76 KSGKEKSKFDEMEKADKVCYDREMKDYGLAKGGKKKDPNAPTRPPSGFCLFCSEFHPKIK 135
Query: 75 KENPNVTAVSAVGKAAGGKWKSMS 98
NP ++ + V K W ++S
Sbjct: 136 STNPGIS-IGDVAKKLSEMWSNLS 158
>gi|237845111|ref|XP_002371853.1| high mobility group protein [Toxoplasma gondii ME49]
gi|211969517|gb|EEB04713.1| high mobility group protein [Toxoplasma gondii ME49]
gi|221480801|gb|EEE19228.1| high mobility group protein, putative [Toxoplasma gondii GT1]
gi|221501467|gb|EEE27242.1| high mobility group protein, putative [Toxoplasma gondii VEG]
Length = 302
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 21 DRKVGKRKAATA------KLDSGS-KRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTF 73
+ GK +AA +L++ + K+ ++ KAKKDPN PKRP SAF F ++ R+
Sbjct: 187 EEHYGKHQAAACCYPWWNRLNTMAPKKTIVKKTKAKKDPNAPKRPLSAFIFFSKDKREEI 246
Query: 74 KKENPNV-TAVSAVGKAAGGKWKSMSPA 100
++NP + + ++ VGK G W +S A
Sbjct: 247 IRKNPELKSKLAEVGKMVGEAWGKLSDA 274
>gi|401402785|ref|XP_003881334.1| high mobility group protein, related [Neospora caninum Liverpool]
gi|325115746|emb|CBZ51301.1| high mobility group protein, related [Neospora caninum Liverpool]
Length = 94
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMSPA 100
KAKKDPN PKRP SAF F ++ R+ ++NP + + ++ VGK G W +S A
Sbjct: 12 KAKKDPNAPKRPLSAFIFFSKDKREEIIRKNPELKSKLAEVGKMVGEAWGKLSDA 66
>gi|425767422|gb|EKV05996.1| Non-histone chromosomal protein 6 [Penicillium digitatum PHI26]
gi|425779648|gb|EKV17689.1| Non-histone chromosomal protein 6 [Penicillium digitatum Pd1]
Length = 189
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR ++ KKDPN PKR SA+ F + R ++ENP ++ VGK G KWK++S
Sbjct: 97 KRVQRRKKDPNAPKRGLSAYMFFANDNRDKVREENPGIS-FGQVGKQLGDKWKALS 151
>gi|432104603|gb|ELK31215.1| High mobility group protein B1 [Myotis davidii]
Length = 201
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN+PKRPPSAFF+F E+ K E+P ++ + + + G W + +
Sbjct: 90 KDPNEPKRPPSAFFLFCSEYCPKIKGEHPGLS-IGDIAEKLGEMWNNTA 137
>gi|356523471|ref|XP_003530362.1| PREDICTED: high mobility group B protein 13-like isoform 1 [Glycine
max]
Length = 478
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN+PK+P S+F +F +E RKT ++E P ++ S + KWK +S
Sbjct: 392 DPNRPKKPASSFILFSKEARKTLQEERPGIS-TSTLNALVSLKWKELS 438
Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
P KPK P SA+F+F + R EN N V K +WK+M+
Sbjct: 264 PLKPKHPMSAYFLFTNDRRAALAAENKNFLEVP---KITSEEWKNMT 307
>gi|339253262|ref|XP_003371854.1| putative HMG box [Trichinella spiralis]
gi|316967828|gb|EFV52201.1| putative HMG box [Trichinella spiralis]
Length = 483
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 39 KRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KRQG R++K KKDPN+P++P SA+ +F + + T K +NPN + V K W ++
Sbjct: 212 KRQG-RKRKPKKDPNEPQKPVSAYALFFRDTQATIKGQNPNAS-FGEVSKIVATLWDGLN 269
>gi|213515010|ref|NP_001133971.1| High mobility group protein B3 [Salmo salar]
gi|209156012|gb|ACI34238.1| High mobility group protein B3 [Salmo salar]
gi|223648118|gb|ACN10817.1| High mobility group protein B3 [Salmo salar]
Length = 206
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
KKDPN PKRP S FF+F + R K ++P++ + V K G +W +++ A
Sbjct: 87 KKDPNAPKRPSSGFFIFCADHRPKIKAQHPSL-GIGDVAKKLGEQWNNLTDAT 138
>gi|356523473|ref|XP_003530363.1| PREDICTED: high mobility group B protein 13-like isoform 2 [Glycine
max]
Length = 467
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN+PK+P S+F +F +E RKT ++E P ++ S + KWK +S
Sbjct: 381 DPNRPKKPASSFILFSKEARKTLQEERPGIS-TSTLNALVSLKWKELS 427
Score = 34.3 bits (77), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
P KPK P SA+F+F + R EN N V K +WK+M+
Sbjct: 264 PLKPKHPMSAYFLFTNDRRAALAAENKNFLEVP---KITSEEWKNMT 307
>gi|444518100|gb|ELV11958.1| High mobility group protein B1 [Tupaia chinensis]
Length = 162
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
PN PKRPPSAFF+F E+R K E+P+++ + V K G W
Sbjct: 92 PNVPKRPPSAFFLFCSEYRPKIKGEHPDLS-IGDVEKKLGEVW 133
>gi|7544638|gb|AAA73079.2| unknown [Saccharomyces cerevisiae]
Length = 183
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
PKRP SA+F++L++ R F KENP + + + K AG KW+++
Sbjct: 43 PKRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEKWQNL 84
>gi|296418046|ref|XP_002838655.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634611|emb|CAZ82846.1| unnamed protein product [Tuber melanosporum]
Length = 103
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKR SA+ F E R+ + +NP + A VGK G +WK++S
Sbjct: 17 KKDPNAPKRGLSAYMFFANEQRENVRNDNPGI-AFGQVGKVLGERWKALS 65
>gi|49250826|gb|AAH74541.1| Ssrp1 protein, partial [Xenopus (Silurana) tropicalis]
Length = 629
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP+ PKRP SA+ ++L R+ K ENP ++ ++ + K AG WKSMS
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENPGIS-ITDLSKKAGEIWKSMS 583
>gi|449501868|ref|XP_004174468.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1
[Taeniopygia guttata]
Length = 705
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P ++ ++ + K AG WK+MS
Sbjct: 535 ESKKGKDPNAPKRPMSAYMLWLNANREKIKSDHPGIS-ITDLSKKAGELWKAMS 587
>gi|449270893|gb|EMC81539.1| High mobility group protein B2 [Columba livia]
Length = 207
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFF+F E R K ++P ++ + K G W S
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLS-IGDTAKKLGEMWSEQS 137
>gi|327260386|ref|XP_003215015.1| PREDICTED: FACT complex subunit SSRP1-like [Anolis carolinensis]
Length = 705
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ + E K KDPN PKRP SA+ ++L R + E+P + +V+ V K AG WK+MS
Sbjct: 530 RKRQSEGKKGKDPNAPKRPLSAYMLWLNANRDKIRSESPGM-SVTDVSKKAGELWKAMS 587
>gi|212526742|ref|XP_002143528.1| nucleosome binding protein (Nhp6a), putative [Talaromyces marneffei
ATCC 18224]
gi|212526744|ref|XP_002143529.1| nucleosome binding protein (Nhp6a), putative [Talaromyces marneffei
ATCC 18224]
gi|210072926|gb|EEA27013.1| nucleosome binding protein (Nhp6a), putative [Talaromyces marneffei
ATCC 18224]
gi|210072927|gb|EEA27014.1| nucleosome binding protein (Nhp6a), putative [Talaromyces marneffei
ATCC 18224]
Length = 103
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
+K KKDPN PKR SA+ F E R+ + ENP + A A+G+ G WK +S +
Sbjct: 16 EKRKKDPNAPKRGLSAYMFFANENRERVRDENPGI-AFGALGRKLGELWKGLSDS 69
>gi|384491850|gb|EIE83046.1| hypothetical protein RO3G_07751 [Rhizopus delemar RA 99-880]
Length = 101
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 31 TAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA 90
TAK + K+ +++KKDP+ PKR SA+ F ++ R T K+ENP + +GK
Sbjct: 9 TAKRAAKDDNDTKKARRSKKDPSAPKRGLSAYMFFSQDQRPTVKEENPKAS-FGEIGKIL 67
Query: 91 GGKWKSMS 98
G +WK++S
Sbjct: 68 GERWKALS 75
>gi|443897570|dbj|GAC74910.1| HMG box-containing protein [Pseudozyma antarctica T-34]
Length = 280
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 16 ALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKK 75
AL P+D + ++ A A K++G + +DP KPKRP SAFF FL + R + +
Sbjct: 175 ALSPDD--IKRQNAYIA----SQKKKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRAS-ES 227
Query: 76 ENPNVTAVSAVGKAAGGKWKSMSP 99
PN+T S G G +WK M+P
Sbjct: 228 VIPNITEFSKRG---GERWKQMTP 248
>gi|211929|gb|AAA48819.1| high-mobility group-2 protein [Gallus gallus]
Length = 207
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFF+F E R K ++P ++ + K G W S
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLS-IGDTAKKLGEMWSEQS 137
>gi|307180072|gb|EFN68140.1| FACT complex subunit Ssrp1 [Camponotus floridanus]
Length = 739
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+KD NKPKRPP+AF ++L R++ K +NP + V+ + K G W+ +
Sbjct: 543 EKDANKPKRPPTAFMLWLNSARESIKADNPGIN-VTEIAKKGGEMWREL 590
>gi|118488333|gb|ABK95985.1| unknown [Populus trichocarpa]
Length = 232
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP KPK P SAFF+F E R EN NV V K AG +WK+M+
Sbjct: 29 DPLKPKHPLSAFFLFSNERRAALLAENKNVL---EVAKIAGEEWKNMT 73
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPNKPK+P S+F +F +E RK+ E+P + + S + KWK +
Sbjct: 154 DPNKPKKPASSFLLFSKETRKSLVHEHPGINS-STLTAMISVKWKEL 199
>gi|169409528|gb|ACA57879.1| High mobility group protein B3 (predicted) [Callicebus moloch]
Length = 193
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPS FF+F EFR K N ++ + V K G W +++
Sbjct: 89 DPNAPKRPPSGFFLFCSEFRPKIKSTNLGIS-IGDVAKKLGEMWNNLN 135
>gi|443899697|dbj|GAC77026.1| isocitrate dehydrogenase, alpha subunit [Pseudozyma antarctica
T-34]
Length = 308
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
SK Q ++EK+ + DP+ PKRPPSA+ +F E R+ +K++P + S+V + WK +
Sbjct: 214 SKLQKRKEKRLR-DPDAPKRPPSAYLLFQNEVRQEIRKKHPGL-PYSSVLRKVSEAWKEL 271
Query: 98 S 98
+
Sbjct: 272 T 272
>gi|148684659|gb|EDL16606.1| mCG50402 [Mus musculus]
Length = 214
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F + K E+P+++ + V K G W
Sbjct: 85 KKKFKDPNAPKRPPSAFFLFYSVYYPKIKGEHPDLS-IGDVAKKLGEMW 132
>gi|380011419|ref|XP_003689803.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit Ssrp1-like
[Apis florea]
Length = 729
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
D NKPKRPP+AF ++L R+ K ENP + AV+ + K G W+ +
Sbjct: 545 DANKPKRPPTAFMMWLNSARERIKAENPGI-AVTEIAKKGGEMWREL 590
>gi|355784552|gb|EHH65403.1| hypothetical protein EGM_02155, partial [Macaca fascicularis]
Length = 116
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 23 KVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA 82
K K T + D G + GK DPN PKRP S FF+F EF K NP ++
Sbjct: 3 KADKVHNDTERKDYGPAKGGKN-----NDPNAPKRPLSGFFLFCSEFHPKMKSTNPGIS- 56
Query: 83 VSAVGKAAGGKWKSMS 98
+ V K G W +++
Sbjct: 57 IGDVAKKLGEMWNNLN 72
>gi|90076282|dbj|BAE87821.1| unnamed protein product [Macaca fascicularis]
Length = 123
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT 81
KK KDPN PKRPPSAFF+F E+R K E+P ++
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 121
>gi|443724197|gb|ELU12309.1| hypothetical protein CAPTEDRAFT_56147, partial [Capitella teleta]
Length = 196
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 24 VGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
+G+ K AT K G KR K KDPN+PKRP SA+F ++ R +K +T V
Sbjct: 1 LGRPKGATTK---GGKR------KKNKDPNRPKRPTSAYFFYVAHCRAECEKRGERITRV 51
Query: 84 SAVGKAAGGKWKSMSP 99
+ K W+ M+P
Sbjct: 52 AQWTKEISQVWREMTP 67
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 17 LKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKE 76
+ P DRK KA K ++ + + + +D N+PKRP SA+F++L FR K +
Sbjct: 65 MTPEDRKGFDAKAVVDK----ARYEEQMNRYKGRDKNRPKRPQSAYFLWLAGFRTRMKDK 120
Query: 77 NPNVTAVSAVGKAAGGKWKSMS 98
P + +AAG WK ++
Sbjct: 121 IP---VNKELLRAAGEHWKRLT 139
>gi|427787117|gb|JAA59010.1| Putative dorsal switch protein 1 [Rhipicephalus pulchellus]
Length = 208
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
KDPN PKRP SAFF F + R ++ENP+ ++V V K G +W + V
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQENPD-SSVGEVAKELGRRWNEVGDDV 141
>gi|167998110|ref|XP_001751761.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696859|gb|EDQ83196.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 356
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KKDPN+ K+P SAF ++ + R+ +ENPN T + + G KWK++S
Sbjct: 65 KKKKKDPNRLKKPKSAFLLWCKVHRQKVCEENPNAT-FAEISTILGDKWKNVS 116
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 26 KRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSA 85
K+ A K D S++ +EKK KDPNKPK+P S++ +F E RK+ + +
Sbjct: 251 KKDMALGKKDLVSEKDQAKEKKKAKDPNKPKKPLSSYLIFGMEMRKSLSNNQVGLN-FAE 309
Query: 86 VGKAAGGKWKSMS 98
KWK +S
Sbjct: 310 TNAHISQKWKELS 322
>gi|297302803|ref|XP_001082943.2| PREDICTED: high mobility group protein B1-like [Macaca mulatta]
Length = 169
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KDPN PKRPPS+FF+F E+R K E+P + V K G W
Sbjct: 50 KDPNVPKRPPSSFFLFCSEYRPKTKGEHPGL-PFDDVAKNLGETW 93
>gi|300122042|emb|CBK22616.2| unnamed protein product [Blastocystis hominis]
Length = 224
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP+KPK+P S + + E R+ KKENP + ++ + K G KWK +S
Sbjct: 22 DPDKPKKPLSGYMRYCNEQREQVKKENPEL-KLTEISKVLGEKWKELS 68
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPNKPKRP S++ +F + R+ K++NP+++ + G WK +
Sbjct: 105 DPNKPKRPLSSYIIFSNDKREEVKRKNPDMSN-KEITTLLGKMWKEL 150
>gi|405963576|gb|EKC29138.1| FACT complex subunit SSRP1 [Crassostrea gigas]
Length = 757
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PKRP SA+F++ R+ KK+ P++ +++ + K AG WK M
Sbjct: 556 DPNAPKRPQSAYFLWFNANREELKKDTPDI-SITDLSKKAGEVWKQM 601
>gi|349806433|gb|AEQ18689.1| putative ssrp1 protein [Hymenochirus curtipes]
Length = 280
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+E K KDP+ PKRP SA+ +L R+ K ENP ++ ++ + K AG WKSM+
Sbjct: 200 QESKNNKDPSAPKRPMSAYMPWLNASREKIKGENPGIS-ITDLSKKAGEIWKSMN 253
>gi|147903143|ref|NP_001079387.1| high mobility group box 2 [Xenopus laevis]
gi|80479234|gb|AAI08500.1| MGC52825 protein [Xenopus laevis]
Length = 211
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
DPN PKRPPSAFF+F E R K E P ++ + K G +W
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETPGLS-IGDTAKKLGERW 134
>gi|308238179|ref|NP_001184126.1| structure specific recognition protein 1 [Xenopus (Silurana)
tropicalis]
Length = 695
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP+ PKRP SA+ ++L R+ K ENP + +++ + K AG WKSMS
Sbjct: 537 DPSAPKRPMSAYMLWLNASREKIKSENPGI-SITDLSKKAGEIWKSMS 583
>gi|27370889|gb|AAH41262.1| MGC52825 protein [Xenopus laevis]
Length = 212
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
DPN PKRPPSAFF+F E R K E P ++ + K G +W
Sbjct: 92 DPNAPKRPPSAFFLFCSEQRPQIKSETPGLS-IGDTAKKLGERW 134
>gi|407926962|gb|EKG19868.1| High mobility group HMG1/HMG2 [Macrophomina phaseolina MS6]
Length = 106
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KKDPN PKR SA+ F + R ++ENP + VGK G +WK++S
Sbjct: 19 KKKKDPNAPKRGLSAYMFFANDMRDKVREENPGIK-FGEVGKILGERWKALS 69
>gi|444706336|gb|ELW47678.1| Leiomodin-1 [Tupaia chinensis]
Length = 823
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDP PKRPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 86 KKKFKDPKAPKRPPSAFFLFCSEYCPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|27502780|gb|AAH42502.1| Ssrp1 protein [Mus musculus]
Length = 711
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D S+R+ KK K DPN PKRP SA+ ++L R+ K ++P + +++ + K AG W
Sbjct: 528 DRKSRRKSSEAKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIW 585
Query: 95 KSMS 98
K MS
Sbjct: 586 KGMS 589
>gi|323332044|gb|EGA73455.1| Abf2p [Saccharomyces cerevisiae AWRI796]
Length = 139
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 34 LDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGK 93
L SKR R + K+ P KRP SA+F++L++ R F KENP + + + K AG K
Sbjct: 25 LLKASKRTQLRNELIKQGP---KRPTSAYFLYLQDHRSQFVKENPTLRP-AEISKIAGEK 80
Query: 94 WKSM 97
W+++
Sbjct: 81 WQNL 84
>gi|432113411|gb|ELK35821.1| FACT complex subunit SSRP1 [Myotis davidii]
Length = 709
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK+MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKAMS 589
>gi|222619008|gb|EEE55140.1| hypothetical protein OsJ_02931 [Oryza sativa Japonica Group]
Length = 157
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 67 EEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E+FRKT+K+ENP+V ++ VGKA G KW +M+
Sbjct: 85 EDFRKTYKEENPSVKSMQEVGKACGEKWNTMT 116
>gi|405977513|gb|EKC41956.1| High mobility group protein B3 [Crassostrea gigas]
Length = 202
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 39 KRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K +G R++KAK DPN+PKR SA+F FL + R+ KK +T ++ K KW M+
Sbjct: 5 KAEGSRKRKAK-DPNRPKRATSAYFFFLSKMREDSKKAGKPITKIAEFTKECSAKWAKMN 63
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 50 KDPN---KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN KPKRP SA+F FL +FR K ++ + + K AG W+++
Sbjct: 91 KDPNDAGKPKRPQSAYFCFLADFRLKMKGKDIDHKEII---KMAGEAWRNLD 139
>gi|226372550|gb|ACO51900.1| High mobility group protein B2 [Rana catesbeiana]
Length = 212
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN PKRPPSAFF+F E R K + P ++ + K G W +P
Sbjct: 92 DPNAPKRPPSAFFLFCSENRPQIKNDTPGLS-IGDTAKKLGELWSEQTP 139
>gi|116283314|gb|AAH04848.1| Ssrp1 protein [Mus musculus]
Length = 633
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D S+R+ KK K DPN PKRP SA+ ++L R+ K ++P + +++ + K AG W
Sbjct: 528 DRKSRRKSSEAKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIW 585
Query: 95 KSMS 98
K MS
Sbjct: 586 KGMS 589
>gi|444705868|gb|ELW47253.1| High mobility group protein B1 [Tupaia chinensis]
Length = 182
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+ K+ +P + + V K G W
Sbjct: 74 KKKFKDPNAPKRPPSAFFLFCPEYHPKLKEGHPGLI-IGDVAKKLGEMW 121
>gi|440804471|gb|ELR25348.1| HMG (high mobility group) box domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 205
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
K+ KKDPN PK+P SAFF F ++ R K ENP+ + +GK G +W +
Sbjct: 96 KRKKKDPNAPKKPCSAFFHFSKKMRPRIKDENPDAS-FGQLGKIIGEQWSKL 146
Score = 38.5 bits (88), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
++ +KDPN PKR +A+ +F +E R K ++P V VGK G W ++
Sbjct: 3 RRKRKDPNAPKRAMTAYMLFSQEKRTQIKTDHPTV-GFGQVGKLLGEAWAAL 53
>gi|358060355|dbj|GAA93760.1| hypothetical protein E5Q_00406 [Mixia osmundae IAM 14324]
Length = 119
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 39 KRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+ GK+EK DPN PKRP SA+ + ++ R K++NP+ + +GK G +WK +
Sbjct: 35 KKSGKKEK----DPNAPKRPLSAYMFYSQDKRTQVKEDNPDAS-FGELGKILGAQWKDLD 89
>gi|344253440|gb|EGW09544.1| High mobility group protein B1 [Cricetulus griseus]
Length = 169
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KD N PKRPPSAFF+F E+ K E+P ++ + V K G KW
Sbjct: 85 KKKFKDSNAPKRPPSAFFLFCSEYCPKIKGEHPGLS-LGDVAKKLGEKW 132
>gi|111154063|ref|NP_892035.2| FACT complex subunit SSRP1 [Mus musculus]
gi|209862973|ref|NP_001129553.1| FACT complex subunit SSRP1 [Mus musculus]
gi|110283006|sp|Q08943.2|SSRP1_MOUSE RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|74138726|dbj|BAE27178.1| unnamed protein product [Mus musculus]
gi|74144584|dbj|BAE27280.1| unnamed protein product [Mus musculus]
gi|74144625|dbj|BAE27299.1| unnamed protein product [Mus musculus]
gi|74177273|dbj|BAE34555.1| unnamed protein product [Mus musculus]
Length = 708
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D S+R+ KK K DPN PKRP SA+ ++L R+ K ++P + +++ + K AG W
Sbjct: 528 DRKSRRKSSEAKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIW 585
Query: 95 KSMS 98
K MS
Sbjct: 586 KGMS 589
>gi|444517137|gb|ELV11379.1| High mobility group protein B1 [Tupaia chinensis]
Length = 204
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
DPN PKRPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 91 DPNAPKRPPSAFFLFCSEYCPKIKGEHPGLS-IGDVAKRLGELW 133
>gi|8170740|gb|AAB19500.2| HMG1-related DNA-binding protein [Mus sp.]
Length = 708
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
D S+R+ KK K DPN PKRP SA+ ++L R+ K ++P + +++ + K AG W
Sbjct: 528 DRKSRRKSSEAKKGK-DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIW 585
Query: 95 KSMS 98
K MS
Sbjct: 586 KGMS 589
>gi|296224352|ref|XP_002758030.1| PREDICTED: high mobility group protein B1-like isoform 1
[Callithrix jacchus]
gi|390474708|ref|XP_003734829.1| PREDICTED: high mobility group protein B1-like isoform 2
[Callithrix jacchus]
Length = 215
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKR PS FF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRTPSVFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|444730108|gb|ELW70503.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPP AFF+F E+R+ K E ++ + V K G W + +
Sbjct: 12 KKKFKDPNAPKRPPLAFFLFCSEYRRKIKGEQSGLS-IGDVAKKLGEMWNNTA 63
>gi|403417262|emb|CCM03962.1| predicted protein [Fibroporia radiculosa]
Length = 253
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 8 GAARVSQEALKPND---RKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFV 64
GAA V Q + P + VG ++ + K+D+ +R R + KDPN PKRP S++ +
Sbjct: 50 GAAAVGQFVMPPGGIPAQVVGGKRKSRIKVDADGRR--IRTPRKLKDPNAPKRPASSYLI 107
Query: 65 FLEEFRKTFKKENPNV 80
F + R+ K+E+P +
Sbjct: 108 FQNDVRQKLKEEHPGI 123
>gi|397524101|ref|XP_003832048.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Pan paniscus]
Length = 130
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K K DPN PKRP S FF+F EF K NP ++ + V K G W +++
Sbjct: 20 KGGKNDPNAPKRPLSGFFLFCSEFCPKIKSTNPGIS-IGDVAKKLGEMWNNLN 71
>gi|115396468|ref|XP_001213873.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
gi|114193442|gb|EAU35142.1| nonhistone chromosomal protein 6A [Aspergillus terreus NIH2624]
Length = 101
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR SA+ F E R ++ENP +T VGK G KWK++S
Sbjct: 19 DPNAPKRGLSAYMFFANENRDKVREENPGIT-FGQVGKMLGEKWKALS 65
>gi|403254821|ref|XP_003920153.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Saimiri
boliviensis boliviensis]
Length = 826
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P ++ ++ + K AG WK MS
Sbjct: 654 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGIS-ITDLSKKAGEIWKGMS 706
>gi|444706070|gb|ELW47432.1| High mobility group protein B1 [Tupaia chinensis]
Length = 138
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K E K KDPN PKR PSAF +F E+R K E+P +T + V K G W + +
Sbjct: 8 KGETKKFKDPNAPKRLPSAFLLFCFEYRPKIKGEHPGLT-IGDVAKKLGEMWNNTA 62
>gi|149628522|ref|XP_001521757.1| PREDICTED: high mobility group protein B2-like, partial
[Ornithorhynchus anatinus]
Length = 106
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFF+F E R K E+P ++ + K G W S
Sbjct: 40 DPNAPKRPPSAFFLFCSEQRPKIKSEHPGLS-IGDTAKKLGELWSEQS 86
>gi|332017611|gb|EGI58308.1| Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A [Acromyrmex echinatior]
Length = 1249
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 25 GKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVS 84
G +++ATA + + K+ KKA +D P++P S +F+FL + R+ + +NP++T +
Sbjct: 49 GVKRSATAT--GNTPNRTKKRKKAPRDATAPRQPLSGYFLFLNDRREKVRNQNPSLT-FT 105
Query: 85 AVGKAAGGKWKSM 97
+ K +W +
Sbjct: 106 EITKLLAAEWSKL 118
>gi|224058355|ref|XP_002299486.1| high mobility group family [Populus trichocarpa]
gi|222846744|gb|EEE84291.1| high mobility group family [Populus trichocarpa]
Length = 498
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP KPK P SAFF+F E R EN NV V K AG +WK+M+
Sbjct: 295 DPLKPKHPLSAFFLFSNERRAALLAENKNVL---EVAKIAGEEWKNMT 339
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPNKPK+P S+F +F +E RK+ E+P + + S + KWK +
Sbjct: 420 DPNKPKKPASSFLLFSKETRKSLVHEHPGINS-STLTAMISVKWKEL 465
>gi|238576322|ref|XP_002387994.1| hypothetical protein MPER_13045 [Moniliophthora perniciosa FA553]
gi|215448913|gb|EEB88924.1| hypothetical protein MPER_13045 [Moniliophthora perniciosa FA553]
Length = 215
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+K KKDPN PKR SA+ F +++R K ENP+ ++ GK G KWK +
Sbjct: 117 RKPKKDPNAPKRALSAYMFFSQDWRDRIKTENPD----ASFGKLLGAKWKEL 164
>gi|444708344|gb|ELW49421.1| High mobility group protein B1 [Tupaia chinensis]
Length = 302
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F ++R KE+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRPPSAFFLFCSDYRPKI-KEHPGLS-IGDVAKKLGEMW 132
>gi|431918516|gb|ELK17735.1| 182 kDa tankyrase-1-binding protein [Pteropus alecto]
Length = 2600
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P ++ ++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKLDHPGIS-ITDLSKKAGEIWKGMS 589
>gi|444729306|gb|ELW69730.1| High mobility group protein B1 [Tupaia chinensis]
Length = 160
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPP AFF+F E+ + E+P + + V K G W
Sbjct: 35 KKKFKDPNAPKRPPLAFFLFCSEYHPKIRGEHPGLY-IGDVAKKLGEMW 82
>gi|354488105|ref|XP_003506211.1| PREDICTED: FACT complex subunit SSRP1-like isoform 1 [Cricetulus
griseus]
gi|354488107|ref|XP_003506212.1| PREDICTED: FACT complex subunit SSRP1-like isoform 2 [Cricetulus
griseus]
gi|344253527|gb|EGW09631.1| FACT complex subunit SSRP1 [Cricetulus griseus]
Length = 709
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 532 RKKSSEAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|426392256|ref|XP_004062472.1| PREDICTED: putative high mobility group protein B1-like 1-like
[Gorilla gorilla gorilla]
Length = 198
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDP+ PKRPPSAFF+F E+ K E+P ++ + V K G W
Sbjct: 73 KKKFKDPSAPKRPPSAFFLFCSEYHPKIKGEHPGLS-IGDVVKKLGEMW 120
>gi|426245460|ref|XP_004023562.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Ovis
aries]
Length = 703
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +V+ + K AG WK MS
Sbjct: 531 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLSKKAGEIWKGMS 583
>gi|296479522|tpg|DAA21637.1| TPA: structure specific recognition protein 1 [Bos taurus]
Length = 709
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +V+ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLSKKAGEIWKGMS 589
>gi|155371817|ref|NP_001094511.1| FACT complex subunit SSRP1 [Bos taurus]
gi|151554654|gb|AAI49986.1| SSRP1 protein [Bos taurus]
gi|440894802|gb|ELR47155.1| FACT complex subunit SSRP1 [Bos grunniens mutus]
Length = 709
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +V+ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLSKKAGEIWKGMS 589
>gi|348556930|ref|XP_003464273.1| PREDICTED: FACT complex subunit SSRP1-like [Cavia porcellus]
Length = 709
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|402077455|gb|EJT72804.1| non-histone chromosomal protein 6 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 101
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
++ KKDP PKR SA+ F E R+ ++ENP V+ VGK G +WK++S
Sbjct: 15 RRGKKDPLAPKRGLSAYMFFANEQRENVREENPGVS-FGQVGKILGERWKALS 66
>gi|45382755|ref|NP_990817.1| high mobility group protein B2 [Gallus gallus]
gi|123373|sp|P26584.2|HMGB2_CHICK RecName: Full=High mobility group protein B2; AltName: Full=High
mobility group protein 2; Short=HMG-2
gi|211927|gb|AAA48818.1| non-histone chromosomal protein [Gallus gallus]
Length = 207
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
DPN PKRPPSAFF+F E R K ++P ++ + K G W
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIKNDHPGLS-IGDTAKKLGEMW 133
>gi|426397135|ref|XP_004064781.1| PREDICTED: high mobility group protein B3-like [Gorilla gorilla
gorilla]
Length = 221
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 28 KAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVG 87
K D K G E KKDPN KRP S FF+F EFR K NP ++ + +
Sbjct: 85 KVDKVHYDQEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFRPKIKSTNPGIS-IGDMA 143
Query: 88 KAAGGKWKSMS 98
K G W + S
Sbjct: 144 KKLGEMWINYS 154
>gi|242064692|ref|XP_002453635.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
gi|241933466|gb|EES06611.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
Length = 488
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
RQ K+++ A DPN+PKRP S+F +F +E RK +E P + S++ KWK +S
Sbjct: 400 RQKKKQENA--DPNRPKRPASSFLLFSKEARKQLLEERPGINN-SSLNALISVKWKELS 455
>gi|223649078|gb|ACN11297.1| FACT complex subunit SSRP1 [Salmo salar]
Length = 711
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+REKK +KD N PKRP S++ ++L R+ K ENP + +++ + K AG WK +
Sbjct: 532 RREKK-QKDTNAPKRPMSSYMLWLNSSRERIKSENPGI-SITEISKKAGEMWKQI 584
>gi|23394916|gb|AAN31640.1|AF484963_1 high mobility group protein 1 [Biomphalaria glabrata]
Length = 215
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 3/48 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPNKPKRPP+A+F+FL ++R + N + + K AG +W+S+S
Sbjct: 96 DPNKPKRPPTAYFLFLADYR--IRMANKGIEHKELL-KMAGEEWRSLS 140
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 32/57 (56%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
GK KK KD NKPKR SA+F FL + RK K T ++ K A KWK++S
Sbjct: 9 GKNSKKKVKDVNKPKRATSAYFFFLAQCRKEAAKAGKAPTKIAEFTKEASEKWKALS 65
>gi|171848939|pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From
High Mobility Group Protein B3
Length = 81
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
N PKRPPS FF+F EFR K NP ++ + V K G W +++
Sbjct: 8 NAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKKLGEMWNNLN 52
>gi|410057780|ref|XP_003954279.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit SSRP1 [Pan
troglodytes]
Length = 709
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|119596659|gb|EAW76253.1| hCG2042470 [Homo sapiens]
Length = 118
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K K DPN PKRP S FF+F EF K NP ++ + V K G W +++
Sbjct: 8 KGGKNDPNAPKRPLSGFFLFCSEFCPKIKSTNPGIS-IGDVAKKLGEMWNNLN 59
>gi|444705434|gb|ELW46861.1| FACT complex subunit SSRP1 [Tupaia chinensis]
Length = 704
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 532 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 584
>gi|351712970|gb|EHB15889.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 677
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 21 DRKVGKR--KAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENP 78
D K KR KA AK G K+ E K KDP+ P++P SA+ ++L R+ K E+P
Sbjct: 512 DEKEQKRLKKAKMAKDPKGHKKT--VEVKKGKDPSVPEQPLSAYVLWLNASREMIKSEHP 569
Query: 79 NVTAVSAVGKAAGGKWKSMS 98
++ ++ + K AG WK MS
Sbjct: 570 GIS-IANLSKKAGEIWKGMS 588
>gi|414585862|tpg|DAA36433.1| TPA: HMG1 protein [Zea mays]
Length = 123
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 56 KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + FF FL EFR + +++P + V V KAAG KW+SMS
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMS 62
>gi|392558113|gb|EIW51341.1| hypothetical protein TRAVEDRAFT_80819, partial [Trametes
versicolor FP-101664 SS1]
Length = 91
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KKDP PKR SA+ F +++R+ K ENP+ +GK G KWK +
Sbjct: 15 KGKKDPKAPKRALSAYMFFSQDWRERIKAENPDA-GFGEIGKLLGAKWKELD 65
>gi|345569047|gb|EGX51916.1| hypothetical protein AOL_s00043g650 [Arthrobotrys oligospora ATCC
24927]
Length = 105
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPN PKR SA+ F E R+ + ENP + A VGK G +WK+++ A
Sbjct: 21 DPNAPKRGLSAYMFFANEQRENVRAENPGI-AFGQVGKVLGERWKALTTA 69
>gi|195627962|gb|ACG35811.1| HMG1/2-like protein [Zea mays]
Length = 123
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 56 KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + FF FL EFR + +++P + V V KAAG KW+SMS
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMS 62
>gi|1806648|gb|AAB41544.1| structure-specific recognition protein 1 [Bos taurus]
Length = 460
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +V+ + K AG WK MS
Sbjct: 288 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SVTDLSKKAGEIWKGMS 340
>gi|414585863|tpg|DAA36434.1| TPA: hypothetical protein ZEAMMB73_396569 [Zea mays]
Length = 119
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 56 KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + FF FL EFR + +++P + V V KAAG KW+SMS
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMS 62
>gi|366998295|ref|XP_003683884.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS
4417]
gi|357522179|emb|CCE61450.1| hypothetical protein TPHA_0A03740 [Tetrapisispora phaffii CBS
4417]
Length = 93
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR SA+ F E R K ENP+V+ VG+ G KWK+++
Sbjct: 17 DPNAPKRALSAYMFFANETRDIVKAENPDVS-FGQVGRILGEKWKALT 63
>gi|195123163|ref|XP_002006078.1| GI18750 [Drosophila mojavensis]
gi|193911146|gb|EDW10013.1| GI18750 [Drosophila mojavensis]
Length = 734
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
D NKPKRP +AF ++L E R+ K++NP + V+ + K G WK +
Sbjct: 557 DSNKPKRPTTAFMLWLSETREQIKRDNPGI-KVTEIAKKGGEMWKEL 602
>gi|322706965|gb|EFY98544.1| high-mobility group 20A [Metarhizium anisopliae ARSEF 23]
Length = 460
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
K + K D N P+RPPSA+ +F + R+T K N T ++ K G W+S+ P
Sbjct: 108 KYRRHPKPDENSPERPPSAYVLFSNKMRETLKDHNLTFTEIA---KLVGENWQSLRP 161
>gi|358372276|dbj|GAA88880.1| nucleosome binding protein (Nhp6a) [Aspergillus kawachii IFO
4308]
Length = 104
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKR SA+ F + R+ ++ENP ++ VGK G +WK++S
Sbjct: 20 KKDPNAPKRGLSAYMFFANDNREKVREENPGIS-FGQVGKMLGERWKALS 68
>gi|281343903|gb|EFB19487.1| hypothetical protein PANDA_011742 [Ailuropoda melanoleuca]
Length = 607
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 520 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 572
>gi|162460188|ref|NP_001105108.1| nucleosome/chromatin assembly factor D [Zea mays]
gi|4995921|emb|CAB44297.1| HMG1 protein [Zea mays]
Length = 123
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 56 KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KR + FF FL EFR + +++P + V V KAAG KW+SMS
Sbjct: 20 KRGLTPFFAFLAEFRPQYLEKHPELKGVKEVSKAAGEKWRSMS 62
>gi|449681405|ref|XP_002159252.2| PREDICTED: FACT complex subunit SSRP1-like [Hydra magnipapillata]
Length = 774
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
D N PKRP SAF +++ E R+ K +NP + A + + K G +WK+++
Sbjct: 543 DENAPKRPMSAFMLYMNEVREKIKADNPGI-AFTDIAKKGGEQWKTLT 589
>gi|344299407|ref|XP_003421377.1| PREDICTED: FACT complex subunit SSRP1 [Loxodonta africana]
Length = 709
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|297688746|ref|XP_002821837.1| PREDICTED: FACT complex subunit SSRP1 isoform 2 [Pongo abelii]
Length = 709
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|444729048|gb|ELW69479.1| High mobility group protein B1 [Tupaia chinensis]
Length = 172
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT 81
KK KDPN PKRPPSAFF+F E+R K ++P ++
Sbjct: 74 KKKSKDPNAPKRPPSAFFLFSSEYRPKIKGDHPGLS 109
>gi|296218242|ref|XP_002755324.1| PREDICTED: FACT complex subunit SSRP1 [Callithrix jacchus]
Length = 709
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|4507241|ref|NP_003137.1| FACT complex subunit SSRP1 [Homo sapiens]
gi|397512296|ref|XP_003826485.1| PREDICTED: FACT complex subunit SSRP1 [Pan paniscus]
gi|426368405|ref|XP_004051198.1| PREDICTED: FACT complex subunit SSRP1 [Gorilla gorilla gorilla]
gi|730840|sp|Q08945.1|SSRP1_HUMAN RecName: Full=FACT complex subunit SSRP1; AltName:
Full=Chromatin-specific transcription elongation factor
80 kDa subunit; AltName: Full=Facilitates chromatin
transcription complex 80 kDa subunit; Short=FACT 80 kDa
subunit; Short=FACTp80; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; Short=hSSRP1; AltName: Full=T160
gi|184242|gb|AAA58660.1| high mobility group box [Homo sapiens]
gi|13477285|gb|AAH05116.1| Structure specific recognition protein 1 [Homo sapiens]
gi|119594140|gb|EAW73734.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|119594141|gb|EAW73735.1| structure specific recognition protein 1, isoform CRA_a [Homo
sapiens]
gi|123993967|gb|ABM84585.1| structure specific recognition protein 1 [synthetic construct]
gi|123998313|gb|ABM86758.1| structure specific recognition protein 1 [synthetic construct]
gi|410226712|gb|JAA10575.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410226714|gb|JAA10576.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262712|gb|JAA19322.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410262714|gb|JAA19323.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305268|gb|JAA31234.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410305270|gb|JAA31235.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351021|gb|JAA42114.1| structure specific recognition protein 1 [Pan troglodytes]
gi|410351025|gb|JAA42116.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 709
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|410973949|ref|XP_003993410.1| PREDICTED: FACT complex subunit SSRP1 [Felis catus]
Length = 709
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|332252411|ref|XP_003275348.1| PREDICTED: FACT complex subunit SSRP1 [Nomascus leucogenys]
Length = 709
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|383872505|ref|NP_001244820.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|402893460|ref|XP_003909913.1| PREDICTED: FACT complex subunit SSRP1 [Papio anubis]
gi|355566511|gb|EHH22890.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
mulatta]
gi|355752113|gb|EHH56233.1| Facilitates chromatin transcription complex subunit SSRP1 [Macaca
fascicularis]
gi|380784229|gb|AFE63990.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|383421069|gb|AFH33748.1| FACT complex subunit SSRP1 [Macaca mulatta]
gi|384949008|gb|AFI38109.1| FACT complex subunit SSRP1 [Macaca mulatta]
Length = 709
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|417404085|gb|JAA48818.1| Putative nucleosome-binding factor spn pob3 subunit [Desmodus
rotundus]
Length = 709
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|170056683|ref|XP_001864141.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167876428|gb|EDS39811.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 372
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
+KA KDPN PKR SAFF F E R K NP V + K G KW M V
Sbjct: 223 RKAFKDPNAPKRSLSAFFWFCHEERNKVKALNPEY-GVGDIAKELGRKWSDMDAEV 277
>gi|410351023|gb|JAA42115.1| structure specific recognition protein 1 [Pan troglodytes]
Length = 712
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 540 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 592
>gi|168021929|ref|XP_001763493.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685286|gb|EDQ71682.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 483
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DP +PK P SAFF F + R +EN VT + K G +WKSMSP+
Sbjct: 259 DPLRPKHPISAFFAFSQSRRPALLEENKPVT---EIAKILGEEWKSMSPS 305
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 56 KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
K+P +AF ++ +++R+ +ENPN T + + G KWK++
Sbjct: 145 KKPKTAFLLWCKDYRQKVCEENPNAT-FAEISTILGDKWKNV 185
>gi|335281869|ref|XP_003353912.1| PREDICTED: FACT complex subunit SSRP1 [Sus scrofa]
Length = 709
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|301774634|ref|XP_002922750.1| PREDICTED: FACT complex subunit SSRP1-like [Ailuropoda melanoleuca]
Length = 709
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|12838247|dbj|BAB24141.1| unnamed protein product [Mus musculus]
Length = 181
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DP P++PPS+F +F + K+ENP+ T V V KAAG W + A
Sbjct: 89 DPKAPRKPPSSFLLFSRDHYAMLKQENPDWTVVQ-VAKAAGKMWSTTDEA 137
>gi|145233003|ref|XP_001399874.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|317026969|ref|XP_003188583.1| non-histone chromosomal protein 6 [Aspergillus niger CBS 513.88]
gi|134056796|emb|CAK37704.1| unnamed protein product [Aspergillus niger]
gi|350634700|gb|EHA23062.1| hypothetical protein ASPNIDRAFT_206990 [Aspergillus niger ATCC
1015]
Length = 103
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKR SA+ F + R+ ++ENP ++ VGK G +WK++S
Sbjct: 19 KKDPNAPKRGLSAYMFFANDNREKVREENPGIS-FGQVGKMLGERWKALS 67
>gi|444732691|gb|ELW72967.1| High mobility group protein B1 [Tupaia chinensis]
Length = 119
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 26/38 (68%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT 81
RE K KD N PKRPPSAFF+F E+R K E+P ++
Sbjct: 32 RETKKFKDSNAPKRPPSAFFLFCSEYRPKIKGEHPGLS 69
>gi|387914026|gb|AFK10622.1| high mobility group box 3 [Callorhinchus milii]
Length = 210
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
K KKDPN PKRPPS FF+F + R K +P +T + V K G W
Sbjct: 92 KKKKDPNAPKRPPSGFFLFCSDHRPKIKAGSPGLT-IGDVAKKLGELW 138
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMS 98
K AK+DP KP+ S++ F++ R+ KK+NP+V S K +WK+MS
Sbjct: 7 KMAKRDPKKPRGKMSSYAYFVQTCREEHKKKNPDVPVNFSDFSKRCSERWKTMS 60
>gi|325303836|tpg|DAA34592.1| TPA_exp: putative HMG-like protein [Amblyomma variegatum]
Length = 145
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
+K KDPN PKRP SAFF F + R ++ENP+ + V V K G +W
Sbjct: 87 RKRAKDPNAPKRPLSAFFWFCNDERPNVRQENPDAS-VGEVAKELGRRW 134
>gi|354485801|ref|XP_003505070.1| PREDICTED: high mobility group protein B1-like [Cricetulus griseus]
Length = 198
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KDPN PKR PSAFF+F E+R K E P ++ + V K G W
Sbjct: 90 KDPNAPKRRPSAFFLFCSEYRPRIKGERPGLS-IGDVAKKLGEMW 133
>gi|23396867|sp|Q9N1Q5.1|SP100_HYLLA RecName: Full=Nuclear autoantigen Sp-100; AltName: Full=Nuclear
dot-associated Sp100 protein; AltName: Full=Speckled 100
kDa
gi|7239187|gb|AAF43110.1|AF169948_1 SP100-HMG nuclear autoantigen, partial [Hylobates lar]
Length = 242
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA 90
DPN PKRPP AFF+F E+R K E+P ++ V K A
Sbjct: 139 DPNAPKRPPLAFFLFCSEYRPKIKGEHPGLSIDDVVKKLA 178
>gi|410961840|ref|XP_003987486.1| PREDICTED: LOW QUALITY PROTEIN: TOX high mobility group box family
member 4 [Felis catus]
Length = 623
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 39 KRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
K+Q +K+ KKDPN+P++P SA+ +F + + K +NPN T V K W S+
Sbjct: 211 KKQKAPKKRXKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDSL 268
>gi|344254860|gb|EGW10964.1| High mobility group protein B1 [Cricetulus griseus]
Length = 186
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KDPN PKR PSAFF+F E+R K E P ++ + V K G W
Sbjct: 78 KDPNAPKRRPSAFFLFCSEYRPRIKGERPGLS-IGDVAKKLGEMW 121
>gi|392877702|gb|AFM87683.1| high mobility group box 3 [Callorhinchus milii]
Length = 203
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
K KKDPN PKRPPS FF+F + R K +P +T + V K G W
Sbjct: 85 KKKKDPNAPKRPPSGFFLFCSDHRPKIKAGSPGLT-IGDVAKKLGELW 131
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMS 98
AK+DP KP+ S++ F++ R+ KK+NP+V S K +WK+MS
Sbjct: 2 AKRDPKKPRGKMSSYAYFVQTCREEHKKKNPDVPVNFSDFSKRCSERWKTMS 53
>gi|402591244|gb|EJW85174.1| hypothetical protein WUBG_03914 [Wuchereria bancrofti]
Length = 246
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 30 ATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKA 89
T ++ + + R+ R+K++K+DPN+P++P SA+ +F + + T K +PN + V K
Sbjct: 78 TTNQVTNRTSRRTIRKKRSKRDPNEPQKPVSAYALFFRDTQATIKGRSPNA-SFGEVSKI 136
Query: 90 AGGKWKSM 97
W S+
Sbjct: 137 VASMWDSL 144
>gi|344305949|ref|XP_003421652.1| PREDICTED: TOX high mobility group box family member 4-like
[Loxodonta africana]
Length = 619
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 39 KRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
K+Q +K+ KKDPN+P++P SA+ +F + + K +NPN T V K W S+
Sbjct: 207 KKQKAPKKRRKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDSL 264
>gi|395544035|ref|XP_003773918.1| PREDICTED: FACT complex subunit SSRP1 [Sarcophilus harrisii]
Length = 712
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|397475678|ref|XP_003809257.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
Length = 165
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP+ PKRPPS FF+F E R K NP ++ V V K G W +++
Sbjct: 66 DPSAPKRPPSGFFLFSSEIRPKIKSTNPGIS-VGDVAKKLGEMWNNLN 112
>gi|126333240|ref|XP_001376238.1| PREDICTED: FACT complex subunit SSRP1 [Monodelphis domestica]
Length = 712
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EGKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|394337181|gb|AFN27605.1| high mobility group protein 1 [Azumapecten farreri]
Length = 215
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP KPKRP +A+F+FL +FRK K N N+ + K AG +W+ ++
Sbjct: 96 DPTKPKRPQTAYFLFLGDFRKKMK--NSNIGHKDII-KQAGAEWRQLT 140
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 35 DSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
DS +KR K+ KD N+PKR SA+F FL R K NV+ ++ K A +W
Sbjct: 7 DSPTKR-----KRKPKDANRPKRATSAYFFFLAHCRAEAKTTGRNVSKIADFTKEASAQW 61
Query: 95 KSMS 98
+SM+
Sbjct: 62 RSMT 65
>gi|345783817|ref|XP_859953.2| PREDICTED: FACT complex subunit SSRP1 isoform 4 [Canis lupus
familiaris]
Length = 711
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 539 EVKKGKDPNAPKRPMSAYMLWLNASREKIKADHPGI-SITDLSKKAGEIWKGMS 591
>gi|20138433|sp|Q9UGV6.1|HMGLX_HUMAN RecName: Full=Putative high mobility group protein 1-like 10;
Short=HMG-1L10
Length = 211
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKR PSAFF+F +R K E+P ++ + V K G W
Sbjct: 86 KKKFKDPNAPKRTPSAFFLFCSAYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|50548527|ref|XP_501733.1| YALI0C11671p [Yarrowia lipolytica]
gi|74635076|sp|Q6CC79.1|NHP6_YARLI RecName: Full=Non-histone chromosomal protein 6
gi|49647600|emb|CAG82043.1| YALI0C11671p [Yarrowia lipolytica CLIB122]
Length = 103
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVSI 103
DPN PKR SA+ F + R + +NP + A VGKA G KWK+++ A +
Sbjct: 21 DPNAPKRALSAYMFFANDNRDAIRADNPGI-AFGQVGKALGEKWKTLTDAEKV 72
>gi|320580355|gb|EFW94578.1| high-mobility group non-histone chromosomal protein, putative
[Ogataea parapolymorpha DL-1]
Length = 91
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
DPN PKR SA+ F E R + ENP + A +GK G KWK++ A
Sbjct: 15 DPNAPKRSLSAYMFFANEQRDIVRAENPGI-AFGQIGKLLGEKWKALDEA 63
>gi|354476918|ref|XP_003500670.1| PREDICTED: high mobility group protein B4-like [Cricetulus griseus]
Length = 180
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Query: 30 ATAKLDSGSKRQ------GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV 83
A AKLD ++ GKR K+ K+DP+ P++PPS+F +F + K +NPN + V
Sbjct: 62 ALAKLDKARYQEEMMNYMGKRRKRRKRDPHAPRQPPSSFLLFSLDHYAQLKHDNPNWSVV 121
Query: 84 SAVGKAAGGKWKSMSPAV 101
V KA G W SM+ V
Sbjct: 122 Q-VAKATGKMW-SMTSNV 137
>gi|344300446|gb|EGW30767.1| Non-histone chromosomal protein 6 [Spathaspora passalidarum NRRL
Y-27907]
Length = 93
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDP+ PKR SA+ F E R + ENP ++ VGK G KWK+++
Sbjct: 14 KKDPDAPKRSLSAYMFFANENRDIVRAENPGIS-FGQVGKLLGEKWKALT 62
>gi|395326844|gb|EJF59249.1| hypothetical protein DICSQDRAFT_109066 [Dichomitus squalens
LYAD-421 SS1]
Length = 117
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KKDP PKR SA+ F +++R+ K ENP+ +GK G KWK +
Sbjct: 24 KGKKDPKAPKRALSAYMFFSQDWRERIKAENPD-AGFGEIGKLLGAKWKELD 74
>gi|351708060|gb|EHB10979.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 241
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
K E K KDPN PKR PSAFF+F E+ K E P ++ + V K G W
Sbjct: 82 KEETKKFKDPNAPKRLPSAFFLFCSEYHPKIKGEYPGLS-IGDVAKKLGEIW 132
>gi|388857490|emb|CCF48846.1| uncharacterized protein [Ustilago hordei]
Length = 292
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 16 ALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKK 75
AL P+D + ++ A A K++G + +DP KPKRP SAFF FL + R +
Sbjct: 187 ALSPDD--IKRQNAYIA----SQKKKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRAR-ET 239
Query: 76 ENPNVTAVSAVGKAAGGKWKSMSP 99
PN+T S G G +WK M+P
Sbjct: 240 VIPNITEFSKRG---GERWKQMAP 260
>gi|195977121|gb|ACG63669.1| high-mobility group box 1 (predicted) [Otolemur garnettii]
Length = 227
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF+F E+R K E+ T V K G W
Sbjct: 87 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHHLSTG--DVAKKLGEMW 133
>gi|301097589|ref|XP_002897889.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262106637|gb|EEY64689.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 210
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
KKDPN PKR SA+F F + R+ + ENPN ++ + KW+++
Sbjct: 111 KKDPNAPKRALSAYFFFCNDIRQEVRDENPN-KKITEIATLLAEKWRAL 158
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ + KKD N PKR SAF F + R T KKE P++ + + G +WK +S
Sbjct: 18 RKPRKKKDKNAPKRALSAFMFFSNDIRDTVKKEMPDLQFLE-ISSEIGRRWKQIS 71
>gi|340383933|ref|XP_003390470.1| PREDICTED: FACT complex subunit SSRP1-like, partial [Amphimedon
queenslandica]
Length = 410
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PK+P S++ ++L+E R + KK++P ++ ++ + K AG WK +
Sbjct: 277 DPNCPKKPLSSYMLWLQEMRPSLKKKHPELS-ITEMSKKAGQLWKEL 322
>gi|444730527|gb|ELW70909.1| High mobility group protein B1 [Tupaia chinensis]
Length = 238
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPP AFF+F E+R + E+P ++ + K G W
Sbjct: 86 KKKFKDPNAPKRPPLAFFLFCSEYRPKIEGEHPGLS-IGDTAKKLGELW 133
>gi|444727982|gb|ELW68448.1| High mobility group protein B1 [Tupaia chinensis]
Length = 165
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
DPN PKRPPSAF +F E+R K E+P ++ + V K G W
Sbjct: 79 DPNAPKRPPSAFSLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 121
>gi|444730059|gb|ELW70455.1| High mobility group protein B1 [Tupaia chinensis]
gi|444730060|gb|ELW70456.1| High mobility group protein B1 [Tupaia chinensis]
Length = 177
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPP AFF F E+ K E+P ++ + V K G W
Sbjct: 53 KKKFKDPNAPKRPPLAFFFFCSEYCPKIKGEHPGLS-IGDVAKKLGEMW 100
>gi|402086642|gb|EJT81540.1| hypothetical protein GGTG_01518 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 481
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 10/92 (10%)
Query: 13 SQEALKPNDRKVGKRKAATAKLDS----GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEE 68
+Q +L+ R +R A T + D+ +KR+ +R KA D N P+RPPSA+ +F +
Sbjct: 77 TQHSLEEQQRHDAQR-AETPRADATAGVATKRKYRRHPKA--DENAPERPPSAYVLFSNK 133
Query: 69 FRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
R K ++ T ++ K G W++++P+
Sbjct: 134 MRDDLKDQHLTFTEIA---KLVGEHWQALAPS 162
>gi|444729825|gb|ELW70228.1| High mobility group protein B1 [Tupaia chinensis]
Length = 141
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDP+ PKRPPSAFF+F E+R K E P + V K G W + +
Sbjct: 24 KKKFKDPSAPKRPPSAFFLFCSEYRPEIKGERPG-RFIGDVAKRLGEMWNNTA 75
>gi|348566777|ref|XP_003469178.1| PREDICTED: high mobility group protein B2-like [Cavia porcellus]
Length = 211
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
PN PKRPPSAFF+F E R K E+P ++ + K G W S
Sbjct: 93 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSEQS 138
>gi|45187563|ref|NP_983786.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|74694642|sp|Q75B82.1|NHP6_ASHGO RecName: Full=Non-histone chromosomal protein 6
gi|44982301|gb|AAS51610.1| ADL310Wp [Ashbya gossypii ATCC 10895]
gi|374106998|gb|AEY95906.1| FADL310Wp [Ashbya gossypii FDAG1]
Length = 94
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR SA+ F E R + ENP ++ VG+ G KWK++S
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPGIS-FGQVGRVLGEKWKALS 63
>gi|444513275|gb|ELV10301.1| High mobility group protein B1 [Tupaia chinensis]
Length = 161
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRP AFF+F E+R K E+P ++ + V K G W
Sbjct: 85 KKKFKDPNAPKRPLLAFFLFCSEYRPQIKGEHPGLS-IGDVAKKLGEMW 132
>gi|363755760|ref|XP_003648095.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892131|gb|AET41278.1| hypothetical protein Ecym_7459 [Eremothecium cymbalariae
DBVPG#7215]
Length = 94
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR SA+ F E R + ENP ++ VG+ G KWK++S
Sbjct: 17 DPNAPKRAMSAYMFFANENRDIVRAENPGIS-FGQVGRVLGEKWKALS 63
>gi|410256408|gb|JAA16171.1| high mobility group box 3 [Pan troglodytes]
Length = 213
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP+ PKRPPS FF+F E R K NP ++ V V K G W +++
Sbjct: 89 DPSAPKRPPSGFFLFSSEIRPKIKSTNPGIS-VGDVAKKLGEMWNNLN 135
>gi|403267260|ref|XP_003925762.1| PREDICTED: uncharacterized protein LOC101050525 [Saimiri
boliviensis boliviensis]
Length = 645
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP+ PKRPPS FF+F EFR K NP ++ + V K G + ++S
Sbjct: 242 DPDAPKRPPSGFFLFCSEFRPKIKSTNPGIS-IGDVAKRLGERRNNLS 288
Score = 34.3 bits (77), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNV-TAVSAVGKAAGGKWKSMS 98
+ A+ DP KPK SA+ F++ R+ KK+NP V + K +WK+MS
Sbjct: 156 RMARGDPKKPKGKVSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 209
>gi|395858039|ref|XP_003801382.1| PREDICTED: FACT complex subunit SSRP1 [Otolemur garnettii]
Length = 710
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
E K +DPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 537 EVKKGRDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|255637700|gb|ACU19173.1| unknown [Glycine max]
Length = 478
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN+PK+P S+F + +E RKT ++E P ++ S + KWK +S
Sbjct: 392 DPNRPKKPASSFILLSKEARKTLQEERPGIS-TSTLNALVSLKWKELS 438
>gi|71662243|ref|XP_818131.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70883364|gb|EAN96280.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 33/49 (67%), Gaps = 5/49 (10%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KD N PKR SA+F F+ +FR K++P+++ V+ KAAG WK++S
Sbjct: 200 KDENAPKRSMSAYFFFVSDFR----KKHPDLS-VTETSKAAGAAWKALS 243
>gi|157129203|ref|XP_001655323.1| high mobility group B1, putative [Aedes aegypti]
gi|108872320|gb|EAT36545.1| AAEL011380-PA [Aedes aegypti]
Length = 278
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
+KA KDPN PKR SAFF F + R K NP V + K G KW M V
Sbjct: 123 RKAFKDPNAPKRSLSAFFWFCHDERNKVKALNPEY-GVGDIAKELGRKWSDMDAEV 177
>gi|351702997|gb|EHB05916.1| High mobility group protein B1 [Heterocephalus glaber]
Length = 204
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKR PS FF+F E+R K E+P ++ V K G W
Sbjct: 86 KKKFKDPNAPKRAPSTFFLFCSEYRPKIKGEHPGLS-TGDVAKKLGEMW 133
>gi|444716453|gb|ELW57303.1| High mobility group protein B1 [Tupaia chinensis]
Length = 213
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K E K KDPN PKRPPSAFF+F E+R +E+P ++ + V K W +++
Sbjct: 70 KGETKKFKDPNAPKRPPSAFFLFCSEYRPKI-REHPGLS-IGDVAKKLEEMWNNIA 123
>gi|992639|gb|AAB08831.1| high mobility group protein-2 (HMG-2) [Ambystoma mexicanum]
Length = 216
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVSI 103
DPN PKR PSAFF+F E R K + P ++ + K G KW +P I
Sbjct: 92 DPNAPKRLPSAFFLFCSEHRLKIKADCPGLS-IGDTAKKLGEKWSEQTPKDKI 143
>gi|403307003|ref|XP_003944004.1| PREDICTED: putative high mobility group protein B3-like
protein-like [Saimiri boliviensis boliviensis]
Length = 94
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
K DPN PKRPPS F+F EF K NP ++ + V K G W
Sbjct: 48 KDDPNAPKRPPSGLFLFCLEFCPKIKSTNPGIS-IGYVAKKLGEMW 92
>gi|290986470|ref|XP_002675947.1| predicted protein [Naegleria gruberi]
gi|284089546|gb|EFC43203.1| predicted protein [Naegleria gruberi]
Length = 215
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
D N PKRP S++ +F + +RK+ ENP + V+ V K G KW M+ A
Sbjct: 116 DENAPKRPLSSYMLFSQTYRKSLVAENPTLK-VTEVAKLVGEKWGKMNDA 164
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKE--NPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PKRP + FF+F +E R+ K + S V K G +W ++
Sbjct: 9 KKDPNAPKRPKTGFFLFCDERREKVKATLGEGEKKSASEVSKLLGEEWGKLT 60
>gi|146412508|ref|XP_001482225.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
gi|146392989|gb|EDK41147.1| hypothetical protein PGUG_05245 [Meyerozyma guilliermondii ATCC
6260]
Length = 90
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP+ PKR SA+ F E R + ENP + A VGK G KWK+M+
Sbjct: 13 DPDAPKRSLSAYMFFANENRDIIRAENPGI-AFGQVGKLLGEKWKAMN 59
>gi|392574245|gb|EIW67382.1| hypothetical protein TREMEDRAFT_74569 [Tremella mesenterica DSM
1558]
Length = 351
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+DPN PKRPPSA+ +F E R +K NP + +G + KWK +S
Sbjct: 130 RDPNAPKRPPSAYIMFQNEVRDQMRKTNPEIAYKEVLGMIS-QKWKDLS 177
>gi|402875874|ref|XP_003901718.1| PREDICTED: high mobility group protein B2-like, partial [Papio
anubis]
Length = 248
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
PN PKRPPSAFF+F E R K E+P ++ + K G W S
Sbjct: 127 PNAPKRPPSAFFLFCSEHRPKIKSEHPGLS-IGDTAKKLGEMWSQQS 172
>gi|238880006|gb|EEQ43644.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 223
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 8 GAARVSQEALKPNDRKVGKRKAATAKLDSGS-----KRQGKREKKAKKDPNKPKRPPSAF 62
G+ VS E LK V + A L SG+ + K+++K +KDPN PK+P + F
Sbjct: 39 GSDHVSAEQLKA----VSEALNTVATLSSGNGAKIEATESKKKRKQEKDPNAPKKPLTMF 94
Query: 63 FVFLEEFRKTF-----KKENPNVTAVSAVGKAAGGKWKSMSPA 100
F F + RK KK+ P+++A+ + +W S+S A
Sbjct: 95 FQFSYDLRKKIGIERKKKDLPSLSAID-MNSMIKDRWDSISEA 136
>gi|50421411|ref|XP_459256.1| DEHA2D17710p [Debaryomyces hansenii CBS767]
gi|74631679|sp|Q6BRB4.1|NHP6_DEBHA RecName: Full=Non-histone chromosomal protein 6
gi|49654923|emb|CAG87430.1| DEHA2D17710p [Debaryomyces hansenii CBS767]
Length = 92
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVSI 103
DP+ PKR SA+ F E R + ENP ++ VGK G KWK+++P I
Sbjct: 15 DPDAPKRSLSAYMFFANENRDIVRAENPGIS-FGQVGKLLGEKWKALTPEDKI 66
>gi|68487936|ref|XP_712185.1| potential HMG-like DNA binding protein Hmo1p [Candida albicans
SC5314]
gi|68488933|ref|XP_711711.1| potential HMG-like DNA binding protein Hmo1p [Candida albicans
SC5314]
gi|46433032|gb|EAK92489.1| potential HMG-like DNA binding protein Hmo1p [Candida albicans
SC5314]
gi|46433556|gb|EAK92992.1| potential HMG-like DNA binding protein Hmo1p [Candida albicans
SC5314]
Length = 223
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
Query: 8 GAARVSQEALKPNDRKVGKRKAATAKLDSGS-----KRQGKREKKAKKDPNKPKRPPSAF 62
G+ VS E LK V + A L SG+ + K+++K +KDPN PK+P + F
Sbjct: 39 GSDHVSAEQLKA----VSEALNTVATLSSGNGAKIEATESKKKRKQEKDPNAPKKPLTMF 94
Query: 63 FVFLEEFRKTF-----KKENPNVTAVSAVGKAAGGKWKSMSPA 100
F F + RK KK+ P+++A+ + +W S+S A
Sbjct: 95 FQFSYDLRKKIGIERKKKDLPSLSAID-MNSMIKDRWDSISEA 136
>gi|328350132|emb|CCA36532.1| Hepatocyte growth factor-regulated tyrosine kinase substrate
[Komagataella pastoris CBS 7435]
Length = 725
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
KKDPN PKR SA+ F E R + ENP + +GK G KWK++
Sbjct: 643 KKDPNAPKRSLSAYMFFANEQRDIVRSENPGIQ-FGEIGKLLGEKWKAL 690
>gi|194068385|dbj|BAG55013.1| high mobility group 1 protein [Saccostrea kegaki]
Length = 201
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+G R++KAK DPNKPKR SA+F FL + R+ K +T ++ K + KW M+
Sbjct: 6 EGGRKRKAK-DPNKPKRSTSAYFYFLGKMREDAKSSGKPITKIAEFTKESSAKWAKMT 62
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 50 KDPN---KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDP+ KPKRP SA+F FL +FR+ K +N + + K AG W+++
Sbjct: 90 KDPSEAGKPKRPQSAYFCFLADFREKMKGKNIDHKEII---KMAGEAWRNLD 138
>gi|126274287|ref|XP_001387507.1| Nonhistone chromosomal protein 6A [Scheffersomyces stipitis CBS
6054]
gi|126213377|gb|EAZ63484.1| Nonhistone chromosomal protein 6A, partial [Scheffersomyces
stipitis CBS 6054]
Length = 85
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDP+ PKR SA+ F E R + ENP ++ VGK G KWK+++
Sbjct: 12 KKDPDAPKRSLSAYMFFANENRDIVRAENPGIS-FGQVGKLLGEKWKALT 60
>gi|452839855|gb|EME41794.1| hypothetical protein DOTSEDRAFT_74007 [Dothistroma septosporum
NZE10]
Length = 108
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K KKDPN PKR SA+ F E R + +NP + VGK G KWK +S
Sbjct: 22 KKKKDPNMPKRGLSAYMFFANEQRDKVRDDNPGIK-FGEVGKQLGEKWKGLS 72
>gi|345319487|ref|XP_001520125.2| PREDICTED: TOX high mobility group box family member 3-like
[Ornithorhynchus anatinus]
Length = 780
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 5/96 (5%)
Query: 2 KGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSA 61
K A ++ +++E ++R +G+++AA DSG K + +KK KKDPN+P++P SA
Sbjct: 414 KSATPSPSSSINEEDADESNRAIGEKRAAP---DSGKKPK-TPKKKKKKDPNEPQKPVSA 469
Query: 62 FFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+ +F + + K +NPN T V K W S+
Sbjct: 470 YALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDSL 504
>gi|444713636|gb|ELW54532.1| High mobility group protein B1 [Tupaia chinensis]
Length = 148
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPS FF+F E+R +E+P + + V K G W + +
Sbjct: 24 KKKFKDPNGPKRPPSVFFLFCSEYRPKI-REHPGLL-IGDVAKKLGEMWNNTA 74
>gi|340520749|gb|EGR50985.1| predicted protein [Trichoderma reesei QM6a]
Length = 83
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+DPN PKR SA+ F E R+ ++ENP ++ VGK G +WK+++
Sbjct: 2 QDPNAPKRGLSAYMFFANEQRENVREENPGIS-FGQVGKLLGERWKALN 49
>gi|72051831|ref|XP_792040.1| PREDICTED: high mobility group protein 1 homolog
[Strongylocentrotus purpuratus]
gi|115767180|ref|XP_001176807.1| PREDICTED: high mobility group protein 1 homolog
[Strongylocentrotus purpuratus]
Length = 204
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100
++AKKDP+ PKR SAFF+F + R K+E+ + + V + +A WK+++PA
Sbjct: 89 RRAKKDPDAPKRNLSAFFLFSRDERGAIKQEHKDWS-VGKIAQALAAIWKTITPA 142
>gi|332375054|gb|AEE62668.1| unknown [Dendroctonus ponderosae]
Length = 306
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G K++GK+ K+ K DPN PKR SAFF F + R K +NP V + K G +W
Sbjct: 193 GEKQRGKKRKQIK-DPNAPKRSLSAFFWFSNDERGKVKAQNPEY-GVGDIAKELGRRWAD 250
Query: 97 MSPAV 101
P V
Sbjct: 251 ADPEV 255
>gi|339521847|gb|AEJ84088.1| TOX high mobility group box family member 4 [Capra hircus]
Length = 619
Score = 44.3 bits (103), Expect = 0.010, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 31 TAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA 90
T +++G K++ + +K KKDPN+P++P SA+ +F + + K +NPN T V K
Sbjct: 200 TVVVEAGKKQKAPKRRK-KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT-FGEVSKIV 257
Query: 91 GGKWKSM 97
W S+
Sbjct: 258 ASMWDSL 264
>gi|219116576|ref|XP_002179083.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409850|gb|EEC49781.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 75
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN PK+ ++FF FL E R K+ENP+++ +GK AG ++++S
Sbjct: 1 KDPNAPKKAMTSFFYFLNEMRPKIKQENPDMS-FGELGKKAGELFRALS 48
>gi|157832121|pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
gi|157832122|pdb|1NHN|A Chain A, The Structure Of The Hmg Box And Its Interaction With
Dna
Length = 81
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
N PKRPPSAFF+F E+R K E+P ++ + V K G W + +
Sbjct: 3 NAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTA 47
>gi|402220154|gb|EJU00226.1| Non-histone chromosomal protein 6 [Dacryopinax sp. DJM-731 SS1]
Length = 97
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
R++ +KKD + PKR SA+ +F E+R K ENP+ + VG+ G KWK +
Sbjct: 13 RKRGSKKDKDAPKRGLSAYLIFSNEWRDRVKAENPDAS-FGDVGRLLGAKWKEL 65
>gi|119588737|gb|EAW68331.1| hCG1991922, isoform CRA_a [Homo sapiens]
gi|119588738|gb|EAW68332.1| hCG1991922, isoform CRA_a [Homo sapiens]
Length = 188
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF++ E+ K E P ++ V K G W
Sbjct: 35 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLS-FGDVAKKLGEMW 82
>gi|344241535|gb|EGV97638.1| High mobility group protein B1 [Cricetulus griseus]
gi|344241536|gb|EGV97639.1| High mobility group protein B1 [Cricetulus griseus]
Length = 154
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN PKRPP AFF+F E+ ++ NP ++ + V K G W + +
Sbjct: 38 KDPNAPKRPPLAFFLFCCEYHPKNQRRNPGLS-IGDVAKKLGEMWNNTA 85
>gi|386783903|gb|AFJ24846.1| high mobility group-1 [Schmidtea mediterranea]
Length = 192
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 34 LDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGK 93
+D+ G + K+ KDPNKPK +AFF F +E RK K+ENP V V K G
Sbjct: 72 MDNYQPPAGTKNKRKIKDPNKPKGAWTAFFFFSDEHRKKIKEENPEYK-VGDVAKVLGKM 130
Query: 94 WKSM 97
W++
Sbjct: 131 WEAC 134
>gi|348680492|gb|EGZ20308.1| hypothetical protein PHYSODRAFT_285400 [Phytophthora sojae]
Length = 211
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 11/99 (11%)
Query: 6 GKGAARVSQEALKPNDRKVG--KRKAATAKLD-----SGSKRQGKREKKAKKDPNKPKRP 58
G+ ++S E +P D KR+ K D S +G R+KK DPN PKR
Sbjct: 60 GRRWKKISDEERRPYDELAAADKRRYQEEKEDYVPDPSFETTKGSRKKK---DPNAPKRA 116
Query: 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
SA+F F + R+ + ENPN ++ + +W+++
Sbjct: 117 LSAYFFFCNDIRQEVRDENPN-KKITEIATLLAERWRAL 154
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
R+ + KKD N PKR SAF F + R+T KKE P + A + G +WK +S
Sbjct: 14 RKPRKKKDKNAPKRALSAFMFFSNDIRETVKKEMPEL-AFLQISSEIGRRWKKIS 67
>gi|393236123|gb|EJD43674.1| hypothetical protein AURDEDRAFT_114700 [Auricularia delicata
TFB-10046 SS5]
Length = 125
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
PKR SA+ F++++R+ K+ENP+ A +GK G KWK MS
Sbjct: 28 PKRALSAYMFFVKDWRERIKEENPDA-AFGEIGKLMGAKWKEMS 70
>gi|242006908|ref|XP_002424284.1| predicted protein [Pediculus humanus corporis]
gi|212507684|gb|EEB11546.1| predicted protein [Pediculus humanus corporis]
Length = 768
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
N PKRPPSA+F+++ E R K+E PN+ ++ + K AG W+ +
Sbjct: 542 NAPKRPPSAYFIWMNENRDKLKEEYPNL-QMTELAKKAGEVWREL 585
>gi|71416266|ref|XP_810170.1| high mobility group protein [Trypanosoma cruzi strain CL Brener]
gi|70874664|gb|EAN88319.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KD N PKR SA+F F+ +FR K++P+++ V+ KAAG WK +S
Sbjct: 200 KDENAPKRSMSAYFFFVSDFR----KKHPDLS-VTETSKAAGAAWKELS 243
>gi|409043132|gb|EKM52615.1| hypothetical protein PHACADRAFT_164552 [Phanerochaete carnosa
HHB-10118-sp]
Length = 115
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+K KKD N PKR SA+ F +++R+ K ENP+ + +GK G KWK +
Sbjct: 21 RKTKKDKNAPKRALSAYMFFSQDWRERVKAENPDAS-FGELGKLLGTKWKELD 72
>gi|344245465|gb|EGW01569.1| hypothetical protein I79_003161 [Cricetulus griseus]
Length = 163
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
KK KDPN PKRPPSA F+F E+R K E+P ++ + V K G W +
Sbjct: 11 KKKFKDPNAPKRPPSA-FLFCSEYRPKIKGEHPGLS-IGDVAKKLGELWHT 59
>gi|444727550|gb|ELW68036.1| High mobility group protein B1 [Tupaia chinensis]
Length = 149
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
K+P+ PKRPPSAFF+F E+R K E+P ++ + K G W
Sbjct: 89 KNPSAPKRPPSAFFLFCSEYRPKIKGEHPGLS-IDDAAKKLGEMW 132
>gi|15237042|ref|NP_192846.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
gi|75266789|sp|Q9T012.1|HMG13_ARATH RecName: Full=High mobility group B protein 13; AltName:
Full=Nucleosome/chromatin assembly factor group D 13
gi|4850287|emb|CAB43043.1| 98b like protein [Arabidopsis thaliana]
gi|7267807|emb|CAB81209.1| 98b like protein [Arabidopsis thaliana]
gi|22136604|gb|AAM91621.1| putative 98b protein [Arabidopsis thaliana]
gi|332657570|gb|AEE82970.1| HMG (high mobility group) box protein [Arabidopsis thaliana]
Length = 446
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 14 QEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKK-DPNKPKRPPSAFFVFLEEFRKT 72
QEAL+ + K+K T + +K K +KK + DPNKPK+P S++F+F ++ RK+
Sbjct: 335 QEALQ-----LLKKKEKTDNIIKKTKETAKNKKKNENVDPNKPKKPTSSYFLFCKDARKS 389
Query: 73 FKKENPNVTAVSAVGKAAGGKWKSM 97
+E+P + S V KW +
Sbjct: 390 VLEEHPGINN-STVTAHISLKWMEL 413
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP KPK+P SA+ ++ E R K EN +V V K AG +WK++S
Sbjct: 242 DPLKPKQPISAYLIYANERRAALKGENKSVI---EVAKMAGEEWKNLS 286
>gi|449685055|ref|XP_002156373.2| PREDICTED: high mobility group protein homolog TDP-1-like, partial
[Hydra magnipapillata]
Length = 218
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+KK KDPNKPKR +A+F FL +FR+ K + + AG KW+SM+
Sbjct: 96 DKKMGKDPNKPKRCQTAYFFFLHDFREQMK--GKALLEGEKIPALAGEKWRSMT 147
>gi|256089447|ref|XP_002580821.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
gi|40365359|gb|AAR85353.1| high mobility group B1 protein [Schistosoma mansoni]
gi|66275796|gb|AAY44045.1| high mobility group B1 [Schistosoma mansoni]
gi|360043524|emb|CCD78937.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
Length = 176
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
R KK K+DP+ PK+ SAFF+F + R K ENP+ VS + K G +W+
Sbjct: 85 RSKKRKRDPDAPKKALSAFFLFCNDERPKVKSENPDWK-VSEIAKELGKRWEHC 137
>gi|343425092|emb|CBQ68629.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 290
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 16 ALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKK 75
AL P D + ++ A A K++G + +DP KPKRP SAFF FL + R + +
Sbjct: 185 ALSPED--IKRQNAYIA----SQKKKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRAS-EA 237
Query: 76 ENPNVTAVSAVGKAAGGKWKSMS 98
PN+T S G G +WK MS
Sbjct: 238 VIPNITEFSKRG---GERWKQMS 257
>gi|395857418|ref|XP_003801091.1| PREDICTED: high mobility group protein B1-like [Otolemur garnettii]
Length = 197
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 40 RQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
R+G+ +KK K DPN PKRP SAFF+F E+ K E+P ++ + V K G W
Sbjct: 123 RKGETKKKFK-DPNAPKRPLSAFFLFCSEYCPKSKGEHPGLS-IGEVAKKLGVMW 175
>gi|428163656|gb|EKX32716.1| FACT complex subunit ssrp1 [Guillardia theta CCMP2712]
Length = 746
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+ KKDPN PKRP SA+ +F + R+ KENP++ GK + WK++S
Sbjct: 544 RQKKDPNAPKRPKSAWLLFCDAKREDIVKENPDIKFTEVNGKIS-EIWKNLS 594
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR +A+ ++ +E R+ +K NP++ + AV + G KWK +
Sbjct: 650 DPNAPKRGQNAYMLWSQEAREKMRKANPDL-PMKAVMQQLGEKWKEID 696
>gi|27466905|gb|AAO12859.1| high mobility group protein [Branchiostoma belcheri tsingtauense]
Length = 164
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+G R K+ KKDPN PKR SAFF++ + R + +P+ V + K G +WK +S
Sbjct: 84 EGGRRKRKKKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGDIAKILGKQWKEIS 140
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV-SAVGKAAGGKWKSMS 98
KD NKPK SA+ F++E R+ +K+ PN V + + +WK+M+
Sbjct: 3 KDKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMN 52
>gi|351707228|gb|EHB10147.1| FACT complex subunit SSRP1 [Heterocephalus glaber]
Length = 709
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
E K KDPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK M
Sbjct: 537 EAKKGKDPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGM 588
>gi|344235657|gb|EGV91760.1| hypothetical protein I79_006916 [Cricetulus griseus]
Length = 139
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 4/54 (7%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFR-KTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN PKRPPSAFF+F E+R KT K +P ++ + V K G W + +
Sbjct: 12 KKKFKDPNAPKRPPSAFFLFCSEYRPKT--KGHPGLS-IGDVAKKLGETWSNTA 62
>gi|256090348|ref|XP_002581158.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
gi|350646061|emb|CCD59339.1| SWI/SNF-related chromatin binding protein [Schistosoma mansoni]
Length = 293
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDP+ PKR SAFF F + FR + E+P+ VS + K G +W+ S
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPD-WKVSDIAKELGRRWEECS 141
>gi|46394418|gb|AAS91553.1| AmphiHMG1/2 [Branchiostoma belcheri tsingtauense]
Length = 222
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+G R K+ KKDPN PKR SAFF++ + R + +P+ V + K G +WK +S
Sbjct: 84 EGGRRKRKKKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGDIAKILGKQWKEIS 140
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV-SAVGKAAGGKWKSMS 98
KD NKPK SA+ F++E R+ +K+ PN V + + +WK+M+
Sbjct: 3 KDKNKPKGKMSAYACFVQECRREHEKKYPNKQVVFTEFSQKCASRWKTMN 52
>gi|45935025|gb|AAS79547.1| At4g11080 [Arabidopsis thaliana]
gi|46367464|emb|CAG25858.1| hypothetical protein [Arabidopsis thaliana]
Length = 450
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 14 QEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKK-DPNKPKRPPSAFFVFLEEFRKT 72
QEAL+ + K+K T + +K K +KK + DPNKPK+P S++F+F ++ RK+
Sbjct: 339 QEALQ-----LLKKKEKTDNIIKKTKETAKNKKKNENVDPNKPKKPTSSYFLFCKDARKS 393
Query: 73 FKKENPNVTAVSAVGKAAGGKWKSM 97
+E+P + S V KW +
Sbjct: 394 VLEEHPGINN-STVTAHITLKWMEL 417
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP KPK+P SA+ ++ E R K EN +V V K G +WK++S
Sbjct: 246 DPLKPKQPISAYLIYANERRAALKGENKSVI---EVAKITGEEWKNLS 290
>gi|71019847|ref|XP_760154.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
gi|46099871|gb|EAK85104.1| hypothetical protein UM04007.1 [Ustilago maydis 521]
Length = 286
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 16 ALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKK 75
AL P D + ++ A A K++G + +DP KPKRP SAFF FL + R + +
Sbjct: 181 ALSPED--IKRQNAYIA----SQKKKGIKGTAFLRDPAKPKRPNSAFFEFLNDLRAS-EA 233
Query: 76 ENPNVTAVSAVGKAAGGKWKSMS 98
PN+T S G G +WK MS
Sbjct: 234 VIPNITEFSKRG---GERWKQMS 253
>gi|444732551|gb|ELW72841.1| High mobility group protein B3 [Tupaia chinensis]
Length = 437
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGG 92
DPN PKR PS FF+F EFR K NP ++ + V K GG
Sbjct: 38 DPNAPKRSPSGFFLFCSEFRPKIKPTNPGIS-MRDVAKKLGG 78
>gi|358255365|dbj|GAA57072.1| high mobility group protein B1, partial [Clonorchis sinensis]
Length = 778
Score = 43.5 bits (101), Expect = 0.014, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
+ +K KKDPN PK+ SAFF+F + R K ++P+ VS + K G +W++
Sbjct: 625 KSRKRKKDPNAPKKALSAFFLFCNDERPKVKADHPD-WKVSEIAKELGKRWET 676
>gi|397502952|ref|XP_003822100.1| PREDICTED: high mobility group protein B3-like [Pan paniscus]
gi|410056873|ref|XP_003317692.2| PREDICTED: high mobility group protein B3-like [Pan troglodytes]
Length = 221
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 28 KAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVG 87
K D K G E KKDPN KRP S FF+F EF K NP ++ + +
Sbjct: 85 KVDKVHYDQEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGIS-IGDMA 143
Query: 88 KAAGGKWKSMS 98
K G W + S
Sbjct: 144 KKLGEMWINYS 154
>gi|195448286|ref|XP_002071591.1| GK25058 [Drosophila willistoni]
gi|194167676|gb|EDW82577.1| GK25058 [Drosophila willistoni]
Length = 406
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
+K KDPN PKR SAFF F + R K NP V + K G KW + P V
Sbjct: 270 RKQMKDPNAPKRSLSAFFWFCNDERNKVKALNPEY-GVGDIAKELGRKWSDVDPEV 324
>gi|255074119|ref|XP_002500734.1| high-mobility protein [Micromonas sp. RCC299]
gi|226515997|gb|ACO61992.1| high-mobility protein [Micromonas sp. RCC299]
Length = 153
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PK+P SA+ +F +E R ENP ++ ++ V K G +WK++
Sbjct: 74 DPNAPKKPLSAYIIFTKERRSAVVAENPGLS-LTEVTKELGARWKAI 119
>gi|195025112|ref|XP_001986001.1| GH21124 [Drosophila grimshawi]
gi|193902001|gb|EDW00868.1| GH21124 [Drosophila grimshawi]
Length = 111
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+KPKRP SA+ ++L R++ KKENP + V+ V K G W++M
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKKENPGIK-VTEVAKRGGELWRAM 46
>gi|441639466|ref|XP_004090212.1| PREDICTED: high mobility group protein B3-like [Nomascus
leucogenys]
Length = 131
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN P+RP S FF+F EF K NP ++ + V K G W +++
Sbjct: 27 DPNAPQRPLSGFFLFCSEFCPEIKSTNPGIS-IGDVAKKLGEMWNNLN 73
>gi|444724258|gb|ELW64868.1| High mobility group protein B1 [Tupaia chinensis]
Length = 140
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK K PN KRPPSAFF+F E+R K E+P ++ + V K G W + +
Sbjct: 24 KKKFKGPNAAKRPPSAFFLFCSEYRPKIKGEHPGLS-IGGVAKKLGEVWNNTA 75
>gi|406866133|gb|EKD19173.1| HMG box protein [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 525
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 20 NDRKVGKRKAATAKLDSGSKRQG-------KREKKAKKDPNKPKRPPSAFFVFLEEFRKT 72
+DR V ++K K++ G + G K + K D N P+RPPSA+ +F + R+
Sbjct: 77 DDRNVEEQKTPGVKVEGGKEANGCAPGVKRKYRRHPKPDDNAPERPPSAYVIFSNKMRED 136
Query: 73 FKKENPNVTAVSAVGKAAGGKWKSMSPA 100
K N + T ++ K G W+++SP+
Sbjct: 137 LKGRNLSFTEIA---KLVGENWQNLSPS 161
>gi|444510699|gb|ELV09703.1| High mobility group protein B2 [Tupaia chinensis]
Length = 233
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 24/47 (51%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
PN PKRPPSAFF+F E K E+P ++ K G W S
Sbjct: 92 PNVPKRPPSAFFLFCSEHHPKIKSEHPGLSIGDTEKKKLGEMWSEQS 138
>gi|290998589|ref|XP_002681863.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
gi|284095488|gb|EFC49119.1| hypothetical protein NAEGRDRAFT_82958 [Naegleria gruberi]
Length = 219
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KKDPN PK+P + +F+F +E R+ K + + S V K G W S+S
Sbjct: 9 KKDPNAPKKPKTGYFLFCDEHREAAKAKTGEKKSASEVSKVLGEMWNSLS 58
>gi|260806967|ref|XP_002598355.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
gi|229283627|gb|EEN54367.1| hypothetical protein BRAFLDRAFT_57556 [Branchiostoma floridae]
Length = 223
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+G R K+ KKDPN PKR SAFF++ + R + +P+ V + K G +WK +S
Sbjct: 85 EGGRRKRKKKDPNAPKRAMSAFFMYCADARPKVRAAHPDFQ-VGEIAKILGRQWKEIS 141
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV-SAVGKAAGGKWKSMS 98
KD NKPK SA+ F++E RK +K+ P+ V + K +WK+M+
Sbjct: 4 KDKNKPKGKMSAYACFVQECRKEHEKKYPDKQVVFTEFSKKCAERWKTMN 53
>gi|75218951|sp|O04235.1|SSRP1_VICFA RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein 1
gi|2104679|emb|CAA66480.1| transcription factor [Vicia faba var. minor]
Length = 642
Score = 43.5 bits (101), Expect = 0.015, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR S F F + R+ KK NP ++ + VG+ G KWK++S
Sbjct: 554 DPNAPKRALSGFMFFSQMERENLKKTNPGIS-FTDVGRVLGEKWKNLS 600
>gi|356513291|ref|XP_003525347.1| PREDICTED: high mobility group B protein 13-like [Glycine max]
Length = 473
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN+PK+P S+F +F +E +KT +E P + S + KWK +S
Sbjct: 387 DPNRPKKPASSFILFSKEAKKTLHEERPGIN-TSTLNALVSLKWKELS 433
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DP KPK P SA+F+F + R EN N V K +WK+M+
Sbjct: 261 DPLKPKHPMSAYFLFTNDRRAALVAENKNFL---EVPKITAEEWKNMT 305
>gi|345807806|ref|XP_003435667.1| PREDICTED: high mobility group protein B1-like [Canis lupus
familiaris]
Length = 135
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KK KDPN KRPPS FF+F E+R K E P ++ + V K G W + +
Sbjct: 12 KKKFKDPNALKRPPSFFFLFCSEYRPKIKGEYPGLS-IGDVAKNLGEMWNNTA 63
>gi|340992807|gb|EGS23362.1| hypothetical protein CTHT_0010300 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 104
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR SA+ F E R ++ENP ++ VGK G +WK+++
Sbjct: 21 DPNAPKRGLSAYMFFANEQRDNVREENPGIS-FGQVGKILGERWKALT 67
>gi|67470045|ref|XP_650993.1| HMG box protein [Entamoeba histolytica HM-1:IMSS]
gi|56467670|gb|EAL45607.1| HMG box protein [Entamoeba histolytica HM-1:IMSS]
gi|449703510|gb|EMD43949.1| HMG (high mobility group) box domain containing protein, putative
[Entamoeba histolytica KU27]
Length = 384
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
KKD NKPK+P +A+ +F E +KK+ P++ +S +GK G +WK +
Sbjct: 101 KKDENKPKKPKNAYLLFSSEKYPQYKKQFPDL-KISEIGKKIGVEWKEL 148
>gi|147777965|emb|CAN70902.1| hypothetical protein VITISV_028213 [Vitis vinifera]
Length = 532
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
A DPNKPK+P S+F +F +E R++F +E P + S + KWK +
Sbjct: 445 ANSDPNKPKKPASSFLLFSKEARRSFLQERPGINN-STLNALISVKWKEL 493
Score = 35.8 bits (81), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 57 RPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
P SAFF+F +E R EB NV + K AG +WK+M+
Sbjct: 298 HPVSAFFLFSKERRAALLXEBKNVL---EIAKIAGEEWKNMT 336
>gi|410044942|ref|XP_001169551.3| PREDICTED: high mobility group protein B1-like [Pan troglodytes]
Length = 269
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KDPN PKRPPSAFF++ E+ K E P ++ + K G W
Sbjct: 113 KKKFKDPNAPKRPPSAFFLYFSEYGPKIKGERPGLS-IGDAAKKLGEMW 160
>gi|255074117|ref|XP_002500733.1| hypothetical protein MICPUN_57400 [Micromonas sp. RCC299]
gi|226515996|gb|ACO61991.1| hypothetical protein MICPUN_57400 [Micromonas sp. RCC299]
Length = 646
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DPN PK+P SA+ +F +E R ENP ++ ++ V K G +WK++
Sbjct: 567 DPNAPKKPLSAYIIFTKERRSAVVAENPGLS-LTEVTKELGARWKAI 612
>gi|97976795|tpe|CAJ29302.1| TPA: putative high mobility group B3 protein [Schistosoma mansoni]
Length = 246
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDP+ PKR SAFF F + FR + E+P+ VS + K G +W+ S
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPD-WKVSDIAKELGRRWEECS 141
>gi|432867565|ref|XP_004071245.1| PREDICTED: nucleolar transcription factor 1-like [Oryzias latipes]
Length = 740
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
KAK +P KPKRP SA F+F EE R+ ++E P+++ S V + W +
Sbjct: 392 KAKANPEKPKRPISAMFIFAEEKRQKLQQERPDLSD-SEVTRCLARMWNDL 441
>gi|393907169|gb|EJD74538.1| hypothetical protein LOAG_18151 [Loa loa]
Length = 317
Score = 43.5 bits (101), Expect = 0.017, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 30 ATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKA 89
+T ++ + R+ R+K++KKDPN+P++P SA+ +F + + K +PN + V K
Sbjct: 85 STDQMTNRISRRTIRKKRSKKDPNEPQKPVSAYALFFRDTQAAIKGRSPNAS-FGEVSKI 143
Query: 90 AGGKWKSM 97
W ++
Sbjct: 144 VASMWDTL 151
>gi|119623033|gb|EAX02628.1| hCG1644442 [Homo sapiens]
Length = 201
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 28 KAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVG 87
K D K G E KKDPN KRP S FF+F EF K NP ++ + +
Sbjct: 65 KVDKVHYDQEMKDNGPVEGGKKKDPNALKRPLSGFFLFCSEFHPKIKSTNPGIS-IGDMA 123
Query: 88 KAAGGKWKSMS 98
K G W + S
Sbjct: 124 KKLGEMWINYS 134
>gi|336274626|ref|XP_003352067.1| hypothetical protein SMAC_00615 [Sordaria macrospora k-hell]
gi|380096352|emb|CCC06400.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 595
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 38 SKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+KR+ +R KA D N P+RPPSA+ +F + R+ K N + T ++ K G W+++
Sbjct: 105 TKRKYRRHPKA--DENAPERPPSAYVLFSNKMREDLKGRNLSFTEIA---KLVGENWQNL 159
Query: 98 SPA 100
+PA
Sbjct: 160 TPA 162
>gi|56756178|gb|AAW26264.1| SJCHGC08557 protein [Schistosoma japonicum]
Length = 177
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDP+ PKR SAFF F + FR + E+P+ VS + K G +W+ S
Sbjct: 94 KDPSMPKRSWSAFFFFCDAFRSKIRSEHPD-WKVSDIAKELGRRWEECS 141
>gi|56757397|gb|AAW26868.1| unknown [Schistosoma japonicum]
Length = 252
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
R KK K+DP+ PK+ SAFF+F + R K ENP+ VS V K G +W+
Sbjct: 95 RSKKRKRDPDAPKKGLSAFFLFCNDERPKVKSENPD-WKVSEVAKELGRRWEH 146
>gi|395753165|ref|XP_003779555.1| PREDICTED: high mobility group protein B1-like [Pongo abelii]
Length = 215
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
KK KD N PKR PSAFF+F E+R K E+P ++ + V K G W
Sbjct: 86 KKKFKDLNAPKRTPSAFFLFCSEYRPKIKGEHPGLS-IGDVAKKLGEMW 133
>gi|328876155|gb|EGG24518.1| high mobility group box-containing protein [Dictyostelium
fasciculatum]
Length = 349
Score = 43.1 bits (100), Expect = 0.018, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99
DPN P+R S F F +E R T K ENP +G G KW++++P
Sbjct: 259 DPNAPRRYLSPFIFFSKEHRPTIKIENPTAN-FGEIGALLGKKWETVTP 306
>gi|325303032|tpg|DAA34552.1| TPA_inf: high mobility group protein C [Amblyomma variegatum]
Length = 212
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWK 95
P PKRPPS F +F + RK KENP +T + K GKWK
Sbjct: 25 PPAPKRPPSGFILFAADARKAVLKENPALTPTEVI-KTVAGKWK 67
>gi|203465|gb|AAA40927.1| HMG box (bp. 1168..1428), partial [Rattus norvegicus]
Length = 561
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 395 DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 441
>gi|346327301|gb|EGX96897.1| High mobility group, superfamily [Cordyceps militaris CM01]
Length = 513
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 8 GAARVSQEALKPNDRKVGKRKAATAKLDSG-SKRQGKREKKAKKDPNKPKRPPSAFFVFL 66
GA Q+ L+ R+ R A ++ SG +KR+ +R K+ D N P+RPPSA+ +F
Sbjct: 76 GAEDARQQQLR---RECATRSEAGSEPTSGVTKRKYRRHPKS--DENAPERPPSAYVLFS 130
Query: 67 EEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+ R+ K N + T ++ K G W+++
Sbjct: 131 NKMREDLKSHNLSFTEIA---KLVGENWQNL 158
>gi|167388437|ref|XP_001738566.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165898168|gb|EDR25112.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 395
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
KKD NKPK+P +A+ +F E +KK+ P++ +S +GK G +WK +
Sbjct: 102 KKDENKPKKPKNAYLLFSSEKYPQYKKQFPDLK-ISEIGKKIGVEWKEL 149
>gi|551090|gb|AAA50238.1| DNA-binding protein [Drosophila melanogaster]
Length = 393
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 32 AKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAG 91
A D G KR K KDPN PKR SAFF F + R K NP V + K G
Sbjct: 254 ALWDRGKKR------KQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEF-GVGDIAKELG 306
Query: 92 GKWKSMSPAV 101
KW + P V
Sbjct: 307 RKWSDVDPEV 316
>gi|29825377|gb|AAO92280.1| putative HMG-like protein [Dermacentor variabilis]
Length = 208
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
KDPN PKRP SAFF F + R ++E+P+ + V V K G +W + V
Sbjct: 91 KDPNAPKRPLSAFFWFCNDERPNVRQESPDAS-VGEVAKELGRRWNEVGDDV 141
>gi|241952671|ref|XP_002419057.1| HMG-like DNA binding protein, putative; high mobility group
protein, putative; non-histone DNA-binding protein,
putative [Candida dubliniensis CD36]
gi|223642397|emb|CAX42640.1| HMG-like DNA binding protein, putative [Candida dubliniensis CD36]
Length = 312
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+ +DP+ PKRP +A+ +F E ++ K+++PN + +S K+ WKS+S
Sbjct: 139 KQKARDPDLPKRPTNAYLIFCEMEKERIKQDDPNASDLS---KSMTEAWKSLS 188
>gi|2565048|gb|AAB91435.1| CAGF9, partial [Homo sapiens]
Length = 331
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
KK KKDPN+P++P SA+ +F + + K +NPN T V K W S+
Sbjct: 1 KKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDSL 51
>gi|270005614|gb|EFA02062.1| hypothetical protein TcasGA2_TC007692 [Tribolium castaneum]
Length = 557
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G K++GK+ K+ K DPN PKR SAFF F + R K +NP V + K G +W
Sbjct: 433 GEKQRGKKRKQVK-DPNAPKRSLSAFFWFSNDERAKVKSQNPEF-GVGDIAKELGRRWAD 490
Query: 97 MSPAV 101
P +
Sbjct: 491 AEPEM 495
>gi|54020668|ref|NP_112383.1| FACT complex subunit SSRP1 [Rattus norvegicus]
gi|83305804|sp|Q04931.2|SSRP1_RAT RecName: Full=FACT complex subunit SSRP1; AltName: Full=Facilitates
chromatin transcription complex subunit SSRP1; AltName:
Full=Recombination signal sequence recognition protein
1; AltName: Full=Structure-specific recognition protein
1; AltName: Full=T160
gi|53734496|gb|AAH83588.1| Structure specific recognition protein 1 [Rattus norvegicus]
gi|149022436|gb|EDL79330.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
gi|149022437|gb|EDL79331.1| structure specific recognition protein 1, isoform CRA_a [Rattus
norvegicus]
Length = 709
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRP SA+ ++L R+ K ++P + +++ + K AG WK MS
Sbjct: 543 DPNAPKRPMSAYMLWLNASREKIKSDHPGI-SITDLSKKAGEIWKGMS 589
>gi|395526464|ref|XP_003765383.1| PREDICTED: high mobility group protein B4 [Sarcophilus harrisii]
Length = 207
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKW 94
DP PKRPPS+FF+F E K +NP+ + V V K G W
Sbjct: 92 DPKAPKRPPSSFFLFSREHYTKIKSDNPHWSVVQ-VAKLLGEMW 134
>gi|226530710|ref|NP_001144208.1| hypothetical protein [Zea mays]
gi|195638446|gb|ACG38691.1| hypothetical protein [Zea mays]
gi|413936487|gb|AFW71038.1| hypothetical protein ZEAMMB73_874920 [Zea mays]
Length = 487
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN+PKRP S+F +F +E RK +E P + S + KWK +S
Sbjct: 408 DPNRPKRPASSFLLFSKEERKQLIEERPGINN-STLNALITVKWKELS 454
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 56 KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
K+P SA+FV+ +E R T E N V +GK G +WK+M+
Sbjct: 288 KQPMSAYFVYSQERRATLVAEKKN---VPEIGKITGEEWKNMT 327
>gi|189236107|ref|XP_973934.2| PREDICTED: similar to High mobility group protein DSP1 (Protein
dorsal switch 1) [Tribolium castaneum]
Length = 505
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 37 GSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96
G K++GK+ K+ K DPN PKR SAFF F + R K +NP V + K G +W
Sbjct: 381 GEKQRGKKRKQVK-DPNAPKRSLSAFFWFSNDERAKVKSQNPEF-GVGDIAKELGRRWAD 438
Query: 97 MSPAV 101
P +
Sbjct: 439 AEPEM 443
>gi|442755991|gb|JAA70155.1| Putative dorsal switch protein 1 [Ixodes ricinus]
Length = 207
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+K KDPN PKRP SAFF F + R ++E+P+ + V V K G +W +
Sbjct: 87 RKRTKDPNAPKRPLSAFFWFCNDERPNVRQESPDAS-VGEVAKELGRRWNDV 137
>gi|324514253|gb|ADY45807.1| FACT complex subunit SSRP1 [Ascaris suum]
Length = 91
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN PKR SAFF +++E R KK P + V+ V KAAG +W +S
Sbjct: 15 KDPNAPKRAMSAFFFWMQENRDRLKK--PGM-GVADVAKAAGAEWAKLS 60
>gi|156369656|ref|XP_001628091.1| predicted protein [Nematostella vectensis]
gi|156215058|gb|EDO36028.1| predicted protein [Nematostella vectensis]
Length = 180
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPNKPKR SA+F F+ R KK+NPN + A+ K G W M+
Sbjct: 89 DPNKPKRCLSAYFHFINLKRDDVKKDNPNASG-GALSKVLGEMWSKMT 135
>gi|407404609|gb|EKF29994.1| high mobility group protein, putative [Trypanosoma cruzi
marinkellei]
Length = 361
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%), Gaps = 5/49 (10%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KD N PKR SA+F F +FR K++P+++ V+ KAAG WK +S
Sbjct: 291 KDENAPKRSMSAYFFFASDFR----KKHPDLS-VTETSKAAGAAWKELS 334
>gi|195381989|ref|XP_002049715.1| GJ21748 [Drosophila virilis]
gi|194144512|gb|EDW60908.1| GJ21748 [Drosophila virilis]
Length = 112
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+KPKRP SA+ ++L R++ K+ENP + V+ V K G W++M
Sbjct: 3 DKPKRPLSAYMLWLNSARESIKRENPGIK-VTEVAKRGGELWRAM 46
>gi|149236976|ref|XP_001524365.1| hypothetical protein LELG_04337 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451900|gb|EDK46156.1| hypothetical protein LELG_04337 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 93
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
DP+ PKR SA+ F E R + ENP +T VGK G KWK++
Sbjct: 16 DPDAPKRSLSAYMFFANENRDIVRAENPGIT-FGQVGKLLGEKWKAL 61
>gi|392883890|gb|AFM90777.1| high mobility group protein [Callorhinchus milii]
Length = 213
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
N P+RPPSAFF+F + R + ENP ++ + V K G W ++
Sbjct: 92 NAPRRPPSAFFIFCSDHRPRIRGENPGIS-IGDVAKKMGELWSGLT 136
>gi|241122588|ref|XP_002403591.1| DNA-binding protein, putative [Ixodes scapularis]
gi|215493481|gb|EEC03122.1| DNA-binding protein, putative [Ixodes scapularis]
Length = 207
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+K KDPN PKRP SAFF F + R ++E+P+ + V V K G +W +
Sbjct: 87 RKRTKDPNAPKRPLSAFFWFCNDERPNVRQESPDAS-VGEVAKELGRRWNDV 137
>gi|29841393|gb|AAP06425.1| SJCHGC00614 protein [Schistosoma japonicum]
gi|66275794|gb|AAY44044.1| high mobility group B1 [Schistosoma japonicum]
gi|226472340|emb|CAX77206.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472342|emb|CAX77207.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472344|emb|CAX77208.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472346|emb|CAX77209.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472348|emb|CAX77210.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472350|emb|CAX77211.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472352|emb|CAX77212.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472354|emb|CAX77213.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472356|emb|CAX77214.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472358|emb|CAX77215.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472360|emb|CAX77216.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472362|emb|CAX77217.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472364|emb|CAX77218.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472366|emb|CAX77219.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472368|emb|CAX77220.1| High mobility group protein DSP1 [Schistosoma japonicum]
gi|226472370|emb|CAX77221.1| High mobility group protein DSP1 [Schistosoma japonicum]
Length = 176
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
R KK K+DP+ PK+ SAFF+F + R K ENP+ VS V K G +W+
Sbjct: 85 RSKKRKRDPDAPKKGLSAFFLFCNDERPKVKSENPDWK-VSEVAKELGRRWEHC 137
>gi|443726517|gb|ELU13637.1| hypothetical protein CAPTEDRAFT_158220 [Capitella teleta]
Length = 198
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+G ++K KDPN PKR SAFF F R + KK PN ++V V K G +W+ ++
Sbjct: 81 KGAVKRKRTKDPNAPKRALSAFFFFCHHERPSVKKTMPN-SSVGEVAKELGKRWEGVT 137
>gi|313225328|emb|CBY06802.1| unnamed protein product [Oikopleura dioica]
Length = 448
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 27/35 (77%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVS 84
KD +PKRPPSA+F+FL++FR +K ++ N TA S
Sbjct: 148 KDQWRPKRPPSAYFLFLKDFRANWKIDSANDTAES 182
>gi|195393910|ref|XP_002055595.1| GJ19445 [Drosophila virilis]
gi|194150105|gb|EDW65796.1| GJ19445 [Drosophila virilis]
Length = 403
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
+K KDPN PKR SAFF F + R K NP V + K G KW + P V
Sbjct: 269 RKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEY-GVGDIAKELGRKWSDVDPEV 323
>gi|407850184|gb|EKG04681.1| high mobility group protein, putative [Trypanosoma cruzi]
Length = 270
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 5/49 (10%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KD N PKR SA+F F+ +FR K++P+++ V+ KAAG WK +S
Sbjct: 200 KDENAPKRSMSAYFFFVGDFR----KKHPDLS-VTETSKAAGAAWKELS 243
>gi|412986109|emb|CCO17309.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 725
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
+KK KKDP+ PK SA+ F E+ R K+NPN+ A + + G +WK++S
Sbjct: 557 QKKRKKDPSAPKGAKSAYICFCEKERANIAKDNPNL-AATEIMTELGKRWKALS 609
>gi|344243983|gb|EGW00087.1| High mobility group protein B4 [Cricetulus griseus]
Length = 106
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
GKR K+ K+DP+ P++PPS+F +F + K +NPN + V V KA G W SM+ V
Sbjct: 6 GKRRKRRKRDPHAPRQPPSSFLLFSLDHYAQLKHDNPNWSVVQ-VAKATGKMW-SMTSNV 63
>gi|412992276|emb|CCO19989.1| nucleosome binding protein [Bathycoccus prasinos]
Length = 94
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR SA+F F+ + R K NP++ V+ VGK G W++MS
Sbjct: 20 DPNAPKRNLSAYFFFMNDQRAKVVKANPDMK-VTEVGKKLGELWRAMS 66
>gi|291395415|ref|XP_002714100.1| PREDICTED: high-mobility group box 2 [Oryctolagus cuniculus]
Length = 210
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKRPPSAFF+F E R + E+ ++ + K G W S
Sbjct: 91 DPNAPKRPPSAFFLFCSEHRPKIRSEHSGLS-IGDTAKKLGEMWSEQS 137
>gi|323508364|emb|CBQ68235.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 979
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 27 RKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAV 86
++AA ++++ ++ Q +R K+ ++ KPKRP SA+ +F+ R + +NP++
Sbjct: 340 QRAAQRRMNAAARLQKRRLKRKEQSSGKPKRPLSAYLLFVNSVRPARQAQNPDMPLTELT 399
Query: 87 GKAAGGKWKSMSPA 100
+ A +W+ ++PA
Sbjct: 400 AEMA-AEWRELAPA 412
>gi|198469582|ref|XP_001355062.2| GA11488 [Drosophila pseudoobscura pseudoobscura]
gi|198146939|gb|EAL32118.2| GA11488 [Drosophila pseudoobscura pseudoobscura]
Length = 393
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
+K KDPN PKR SAFF F + R K NP V + K G KW + P V
Sbjct: 261 RKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEY-GVGDIAKELGRKWSDVDPEV 315
>gi|195167323|ref|XP_002024483.1| GL15829 [Drosophila persimilis]
gi|194107881|gb|EDW29924.1| GL15829 [Drosophila persimilis]
Length = 173
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
+K KDPN PKR SAFF F + R K NP V + K G KW + P V
Sbjct: 41 RKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEY-GVGDIAKELGRKWSDVDPEV 95
>gi|297283989|ref|XP_001084652.2| PREDICTED: TOX high mobility group box family member 3 isoform 1
[Macaca mulatta]
Length = 744
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 2 KGAKGKGAARVSQEALKPNDRKVGKRKAATAKLDSGSKRQGKREKKAKKDPNKPKRPPSA 61
K A ++ +++E +R +G+++AA DSG K + +KK KKDPN+P++P SA
Sbjct: 358 KSATPSPSSSINEEDADEANRAIGEKRAAP---DSGKKPK-TPKKKKKKDPNEPQKPVSA 413
Query: 62 FFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97
+ +F + + K +NPN T V K W S+
Sbjct: 414 YALFFRDTQAAIKGQNPNAT-FGEVSKIVASMWDSL 448
>gi|156382433|ref|XP_001632558.1| predicted protein [Nematostella vectensis]
gi|156219615|gb|EDO40495.1| predicted protein [Nematostella vectensis]
Length = 287
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 7/71 (9%)
Query: 36 SGSKRQGKREKKAK----KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAV---SAVGK 88
+ S ++GK AK KDPN PK+P +AFF+F ++ R ++++ + TAV + K
Sbjct: 91 TSSHKKGKSRSSAKQDKEKDPNAPKKPANAFFMFCQQQRTVMQEDHKDATAVMGHHELTK 150
Query: 89 AAGGKWKSMSP 99
+ +W ++ P
Sbjct: 151 SLAKEWNNLLP 161
>gi|345320167|ref|XP_001521836.2| PREDICTED: FACT complex subunit SSRP1-like, partial
[Ornithorhynchus anatinus]
Length = 295
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
KDPN PKRP SA+ ++L R+ K ++P ++ ++ + K AG WK M+
Sbjct: 122 KDPNAPKRPMSAYMLWLNASREKIKADHPGIS-ITDLSKKAGEIWKGMT 169
>gi|170575732|ref|XP_001893362.1| high mobility group protein [Brugia malayi]
gi|312082913|ref|XP_003143642.1| high mobility group protein [Loa loa]
gi|158600692|gb|EDP37804.1| high mobility group protein [Brugia malayi]
gi|393906921|gb|EJD74451.1| high mobility group protein, variant [Loa loa]
Length = 90
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMS 98
DPN PKR SAFF+++ E R KK P ++ V V KAAG +W +M+
Sbjct: 19 DPNAPKRAMSAFFIWMNENRDRIKK--PGMS-VGDVAKAAGIEWAAMT 63
>gi|194770156|ref|XP_001967163.1| GF19115 [Drosophila ananassae]
gi|190619283|gb|EDV34807.1| GF19115 [Drosophila ananassae]
Length = 387
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
+K KDPN PKR SAFF F + R K NP V + K G KW + P V
Sbjct: 256 RKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEF-GVGDIAKELGRKWSDVDPEV 310
>gi|260166759|gb|ACX32991.1| RE09522p [Drosophila melanogaster]
Length = 411
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
+K KDPN PKR SAFF F + R K NP V + K G KW + P V
Sbjct: 280 RKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEF-GVGDIAKELGRKWSDVDPEV 334
>gi|195134440|ref|XP_002011645.1| GI10980 [Drosophila mojavensis]
gi|193906768|gb|EDW05635.1| GI10980 [Drosophila mojavensis]
Length = 402
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101
+K KDPN PKR SAFF F + R K NP V + K G KW + P V
Sbjct: 266 RKQIKDPNAPKRSLSAFFWFCNDERNKVKALNPEY-GVGDIAKELGRKWSDVDPEV 320
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.308 0.125 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,547,897,245
Number of Sequences: 23463169
Number of extensions: 54313232
Number of successful extensions: 386298
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2057
Number of HSP's successfully gapped in prelim test: 1116
Number of HSP's that attempted gapping in prelim test: 381771
Number of HSP's gapped (non-prelim): 4838
length of query: 103
length of database: 8,064,228,071
effective HSP length: 72
effective length of query: 31
effective length of database: 6,374,879,903
effective search space: 197621276993
effective search space used: 197621276993
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 69 (31.2 bits)