Query 034117
Match_columns 103
No_of_seqs 137 out of 1183
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 09:57:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034117.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034117hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00199 high mobility group p 99.8 1E-19 2.2E-24 120.9 6.4 62 41-102 9-71 (94)
2 cd01389 MATA_HMG-box MATA_HMG- 99.7 1.7E-16 3.7E-21 101.0 5.3 48 54-102 1-48 (77)
3 cd01390 HMGB-UBF_HMG-box HMGB- 99.6 4.9E-16 1.1E-20 94.8 5.2 47 55-102 1-47 (66)
4 cd01388 SOX-TCF_HMG-box SOX-TC 99.6 7.4E-16 1.6E-20 97.1 5.3 47 55-102 2-48 (72)
5 COG5648 NHP6B Chromatin-associ 99.6 1.1E-15 2.5E-20 114.5 4.8 59 43-102 59-117 (211)
6 PF00505 HMG_box: HMG (high mo 99.6 1.8E-15 3.9E-20 93.2 4.5 47 55-102 1-47 (69)
7 smart00398 HMG high mobility g 99.6 4.6E-15 9.9E-20 90.8 5.4 48 54-102 1-48 (70)
8 cd00084 HMG-box High Mobility 99.5 8.9E-15 1.9E-19 88.6 5.2 47 55-102 1-47 (66)
9 KOG0381 HMG box-containing pro 99.5 1E-13 2.2E-18 90.8 5.6 51 51-102 17-69 (96)
10 PF09011 HMG_box_2: HMG-box do 99.5 8E-14 1.7E-18 88.0 4.7 50 52-102 1-51 (73)
11 KOG0527 HMG-box transcription 99.4 1E-13 2.2E-18 110.2 4.8 55 48-103 56-110 (331)
12 KOG0526 Nucleosome-binding fac 99.3 3.1E-12 6.7E-17 106.6 4.6 55 44-101 525-579 (615)
13 KOG0528 HMG-box transcription 98.7 5.3E-09 1.1E-13 86.5 2.0 55 48-103 319-373 (511)
14 KOG3248 Transcription factor T 98.7 2E-08 4.3E-13 80.6 3.8 48 54-102 191-238 (421)
15 KOG4715 SWI/SNF-related matrix 98.4 2.6E-07 5.7E-12 73.8 3.8 54 48-102 58-111 (410)
16 KOG2746 HMG-box transcription 97.7 1.7E-05 3.7E-10 68.0 1.9 54 48-102 175-230 (683)
17 PF04690 YABBY: YABBY protein; 97.2 0.00086 1.9E-08 49.3 5.5 49 50-99 117-165 (170)
18 PF06382 DUF1074: Protein of u 96.2 0.006 1.3E-07 45.3 3.7 39 59-102 83-121 (183)
19 PF08073 CHDNT: CHDNT (NUC034) 95.9 0.011 2.3E-07 36.2 3.2 40 59-99 13-52 (55)
20 PF14887 HMG_box_5: HMG (high 95.0 0.046 1E-06 35.8 4.1 48 54-103 3-50 (85)
21 PF06244 DUF1014: Protein of u 93.0 0.2 4.4E-06 35.0 4.3 46 54-100 71-117 (122)
22 PF04769 MAT_Alpha1: Mating-ty 92.8 0.26 5.5E-06 37.1 4.9 42 50-96 39-80 (201)
23 COG5648 NHP6B Chromatin-associ 88.0 0.22 4.7E-06 37.9 0.8 49 51-100 140-188 (211)
24 KOG3223 Uncharacterized conser 77.0 4.1 8.9E-05 31.0 3.8 46 54-100 163-209 (221)
25 PRK15117 ABC transporter perip 49.6 22 0.00048 26.4 3.3 24 78-102 66-90 (211)
26 TIGR03481 HpnM hopanoid biosyn 42.6 16 0.00034 27.0 1.5 23 79-102 63-86 (198)
27 smart00271 DnaJ DnaJ molecular 35.9 84 0.0018 17.7 3.9 37 66-102 19-60 (60)
28 PF13875 DUF4202: Domain of un 34.4 73 0.0016 23.8 3.9 36 61-100 131-166 (185)
29 PF15076 DUF4543: Domain of un 33.9 39 0.00084 21.5 2.1 25 48-72 25-49 (75)
30 PF09164 VitD-bind_III: Vitami 33.6 1.3E+02 0.0028 19.1 4.6 33 60-93 9-41 (68)
31 PF06945 DUF1289: Protein of u 30.8 26 0.00056 20.5 0.9 15 83-102 24-38 (51)
32 PF15581 Imm35: Immunity prote 29.2 45 0.00098 22.3 1.9 19 83-101 32-50 (93)
33 PF13412 HTH_24: Winged helix- 28.4 65 0.0014 17.6 2.3 21 74-95 12-32 (48)
34 PF11304 DUF3106: Protein of u 27.8 92 0.002 20.8 3.3 29 73-102 34-64 (107)
35 PF05494 Tol_Tol_Ttg2: Toluene 27.2 43 0.00093 23.5 1.6 24 78-102 36-60 (170)
36 PRK10236 hypothetical protein; 23.8 42 0.00091 26.0 1.1 18 85-102 117-134 (237)
37 PHA03102 Small T antigen; Revi 23.0 1E+02 0.0023 22.1 3.0 37 65-101 24-60 (153)
38 KOG1827 Chromatin remodeling c 21.5 4.5 9.7E-05 35.3 -5.0 41 58-99 552-592 (629)
No 1
>PTZ00199 high mobility group protein; Provisional
Probab=99.80 E-value=1e-19 Score=120.86 Aligned_cols=62 Identities=40% Similarity=0.670 Sum_probs=55.4
Q ss_pred ccccccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhhCCCcccc
Q 034117 41 QGKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 41 ~~~k~kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~-s~~eisK~lge~Wk~Ls~eER 102 (103)
.+++++++.+|||.|+||+||||+|++++|..|..+||++. ++.+|+++||++|+.||++||
T Consensus 9 ~~k~~~k~~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~eeK 71 (94)
T PTZ00199 9 LVRKNKRKKKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSEEEK 71 (94)
T ss_pred cccccCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCHHHH
Confidence 34455667789999999999999999999999999999983 389999999999999999886
No 2
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=99.65 E-value=1.7e-16 Score=101.04 Aligned_cols=48 Identities=31% Similarity=0.623 Sum_probs=45.9
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 54 ~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
.|+||+||||||+++.|..|..+||++ ++.||+++||++|+.|+++||
T Consensus 1 ~~kRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK 48 (77)
T cd01389 1 KIPRPRNAFILYRQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVK 48 (77)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHH
Confidence 489999999999999999999999999 699999999999999999986
No 3
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=99.63 E-value=4.9e-16 Score=94.81 Aligned_cols=47 Identities=49% Similarity=0.820 Sum_probs=45.5
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 55 PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
|+||+|+|++|++++|..+..+||++ ++.+|++.||++|++||++||
T Consensus 1 Pkrp~saf~~f~~~~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK 47 (66)
T cd01390 1 PKRPLSAYFLFSQEQRPKLKKENPDA-SVTEVTKILGEKWKELSEEEK 47 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 89999999999999999999999999 699999999999999999986
No 4
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=99.62 E-value=7.4e-16 Score=97.06 Aligned_cols=47 Identities=32% Similarity=0.551 Sum_probs=45.0
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 55 PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
.|||+||||+|++++|..++.+||++ ++.||+++||++|+.|+++||
T Consensus 2 iKrP~naf~~F~~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK 48 (72)
T cd01388 2 IKRPMNAFMLFSKRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEK 48 (72)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 58999999999999999999999999 599999999999999999886
No 5
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=99.59 E-value=1.1e-15 Score=114.49 Aligned_cols=59 Identities=44% Similarity=0.755 Sum_probs=54.6
Q ss_pred ccccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 43 KREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 43 ~k~kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
+...++.+|||.||||+|+||+|++++|.++..++|.+ +|.+|++.+|++|++|+++||
T Consensus 59 k~~~r~k~dpN~PKRp~sayf~y~~~~R~ei~~~~p~l-~~~e~~k~~~e~WK~Ltd~ek 117 (211)
T COG5648 59 KRLVRKKKDPNGPKRPLSAYFLYSAENRDEIRKENPKL-TFGEVGKLLSEKWKELTDEEK 117 (211)
T ss_pred HHHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHHhccHhhh
Confidence 34556678999999999999999999999999999999 599999999999999999986
No 6
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=99.58 E-value=1.8e-15 Score=93.17 Aligned_cols=47 Identities=38% Similarity=0.738 Sum_probs=43.4
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 55 PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
|+||+|||++|+++++..++.+||++ ++.+|++.||++|++|+++||
T Consensus 1 PkrP~~af~lf~~~~~~~~k~~~p~~-~~~~i~~~~~~~W~~l~~~eK 47 (69)
T PF00505_consen 1 PKRPPNAFMLFCKEKRAKLKEENPDL-SNKEISKILAQMWKNLSEEEK 47 (69)
T ss_dssp SSSS--HHHHHHHHHHHHHHHHSTTS-THHHHHHHHHHHHHCSHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHHHHhccc-ccccchhhHHHHHhcCCHHHH
Confidence 89999999999999999999999999 599999999999999999986
No 7
>smart00398 HMG high mobility group.
Probab=99.57 E-value=4.6e-15 Score=90.77 Aligned_cols=48 Identities=42% Similarity=0.728 Sum_probs=45.9
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 54 ~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
.|+||+|+|++|++++|..+..+||++ ++.+|++.||++|+.|++++|
T Consensus 1 ~pkrp~~~y~~f~~~~r~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~ek 48 (70)
T smart00398 1 KPKRPMSAFMLFSQENRAKIKAENPDL-SNAEISKKLGERWKLLSEEEK 48 (70)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 589999999999999999999999999 599999999999999999986
No 8
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=99.55 E-value=8.9e-15 Score=88.56 Aligned_cols=47 Identities=45% Similarity=0.780 Sum_probs=45.2
Q ss_pred CCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 55 PKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 55 PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
|+||+|+||+|++++|..+..+||++ ++.+|++.||++|+.|++++|
T Consensus 1 pkrp~~af~~f~~~~~~~~~~~~~~~-~~~~i~~~~~~~W~~l~~~~k 47 (66)
T cd00084 1 PKRPLSAYFLFSQEHRAEVKAENPGL-SVGEISKILGEMWKSLSEEEK 47 (66)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 79999999999999999999999999 599999999999999999986
No 9
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=99.47 E-value=1e-13 Score=90.76 Aligned_cols=51 Identities=47% Similarity=0.806 Sum_probs=48.4
Q ss_pred CC--CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 51 DP--NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 51 dp--~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
|+ +.|+||++||++|++++|..++.+||++ ++.||++++|++|++|+++++
T Consensus 17 ~p~~~~pkrp~sa~~~f~~~~~~~~k~~~p~~-~~~~v~k~~g~~W~~l~~~~k 69 (96)
T KOG0381|consen 17 DPNAQAPKRPLSAFFLFSSEQRSKIKAENPGL-SVGEVAKALGEMWKNLAEEEK 69 (96)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHH
Confidence 66 5999999999999999999999999998 699999999999999999886
No 10
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=99.46 E-value=8e-14 Score=87.97 Aligned_cols=50 Identities=42% Similarity=0.735 Sum_probs=42.2
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHh-CCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 52 PNKPKRPPSAFFVFLEEFRKTFKKE-NPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 52 p~~PKRP~say~lF~~e~R~~ik~e-~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
|+.||||+|||+||+.+++..+..+ ++.. ++.|+++.|++.|++||++||
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~-~~~e~~k~~~~~Wk~Ls~~EK 51 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQ-SFREVMKEISERWKSLSEEEK 51 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-S-SHHHHHHHHHHHHHHS-HHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCC-CHHHHHHHHHHHHHhcCHHHH
Confidence 6899999999999999999999988 6767 599999999999999999986
No 11
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=99.44 E-value=1e-13 Score=110.16 Aligned_cols=55 Identities=31% Similarity=0.549 Sum_probs=50.7
Q ss_pred cCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCccccC
Q 034117 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVSI 103 (103)
Q Consensus 48 k~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER~ 103 (103)
.....+..||||||||+|.+.+|.+|..+||.++ +.||||.||.+|+.|+++||.
T Consensus 56 ~k~~~~hIKRPMNAFMVWSq~~RRkma~qnP~mH-NSEISK~LG~~WK~Lse~EKr 110 (331)
T KOG0527|consen 56 DKTSTDRIKRPMNAFMVWSQGQRRKLAKQNPKMH-NSEISKRLGAEWKLLSEEEKR 110 (331)
T ss_pred CCCCccccCCCcchhhhhhHHHHHHHHHhCcchh-hHHHHHHHHHHHhhcCHhhhc
Confidence 3356779999999999999999999999999995 999999999999999999973
No 12
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=99.28 E-value=3.1e-12 Score=106.60 Aligned_cols=55 Identities=44% Similarity=0.765 Sum_probs=50.1
Q ss_pred cccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCccc
Q 034117 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101 (103)
Q Consensus 44 k~kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eE 101 (103)
++.++.+|||+|||++||||+|.+..|..|+.+ +. +++||++.+|++|+.|+..+
T Consensus 525 k~~kk~kdpnapkra~sa~m~w~~~~r~~ik~d--gi-~~~dv~kk~g~~wk~ms~k~ 579 (615)
T KOG0526|consen 525 KKGKKKKDPNAPKRATSAYMLWLNASRESIKED--GI-SVGDVAKKAGEKWKQMSAKE 579 (615)
T ss_pred cCcccCCCCCCCccchhHHHHHHHhhhhhHhhc--Cc-hHHHHHHHHhHHHhhhcccc
Confidence 455667899999999999999999999999987 88 69999999999999999854
No 13
>KOG0528 consensus HMG-box transcription factor SOX5 [Transcription]
Probab=98.71 E-value=5.3e-09 Score=86.52 Aligned_cols=55 Identities=27% Similarity=0.474 Sum_probs=49.5
Q ss_pred cCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCccccC
Q 034117 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVSI 103 (103)
Q Consensus 48 k~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER~ 103 (103)
....++..||||||||+|.+|.|..|...+|+++ +..|+++||-+|+.|+..|++
T Consensus 319 ~~ss~PHIKRPMNAFMVWAkDERRKILqA~PDMH-NSnISKILGSRWKaMSN~eKQ 373 (511)
T KOG0528|consen 319 RASSEPHIKRPMNAFMVWAKDERRKILQAFPDMH-NSNISKILGSRWKAMSNTEKQ 373 (511)
T ss_pred cCCCCccccCCcchhhcccchhhhhhhhcCcccc-ccchhHHhccccccccccccc
Confidence 3455678999999999999999999999999996 999999999999999988763
No 14
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=98.66 E-value=2e-08 Score=80.58 Aligned_cols=48 Identities=23% Similarity=0.479 Sum_probs=43.9
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 54 ~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
..|+|+||||+|++|.|..|.+|+.-- ...+|.++||.+|..||.||.
T Consensus 191 hiKKPLNAFmlyMKEmRa~vvaEctlK-eSAaiNqiLGrRWH~LSrEEQ 238 (421)
T KOG3248|consen 191 HIKKPLNAFMLYMKEMRAKVVAECTLK-ESAAINQILGRRWHALSREEQ 238 (421)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHhHHHhhhhHHHH
Confidence 789999999999999999999999744 588999999999999998874
No 15
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=98.40 E-value=2.6e-07 Score=73.75 Aligned_cols=54 Identities=22% Similarity=0.527 Sum_probs=49.9
Q ss_pred cCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 48 AKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 48 k~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
..+.|..|-+|+-+||.|+...|.++++.||++. .-||.++||.+|..|+++|+
T Consensus 58 ~pkpPkppekpl~pymrySrkvWd~VkA~nPe~k-LWeiGK~Ig~mW~dLpd~EK 111 (410)
T KOG4715|consen 58 RPKPPKPPEKPLMPYMRYSRKVWDQVKASNPELK-LWEIGKIIGGMWLDLPDEEK 111 (410)
T ss_pred CCCCCCCCCcccchhhHHhhhhhhhhhccCcchH-HHHHHHHHHHHHhhCcchHH
Confidence 3456778999999999999999999999999996 99999999999999999986
No 16
>KOG2746 consensus HMG-box transcription factor Capicua and related proteins [Transcription]
Probab=97.69 E-value=1.7e-05 Score=68.01 Aligned_cols=54 Identities=26% Similarity=0.535 Sum_probs=48.6
Q ss_pred cCCCCCCCCCCCchhHhHHHHHH--HHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 48 AKKDPNKPKRPPSAFFVFLEEFR--KTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 48 k~kdp~~PKRP~say~lF~~e~R--~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
-+.+.....||||+|++|++.+| ..+.+.||+. .+.-|+++|||.|-.|-++|+
T Consensus 175 nkr~k~HirrPMnaf~ifskrhr~~g~vhq~~pn~-DNrtIskiLgewWytL~~~Ek 230 (683)
T KOG2746|consen 175 NKRDKDHIRRPMNAFHIFSKRHRGEGRVHQRHPNQ-DNRTISKILGEWWYTLGPNEK 230 (683)
T ss_pred CcCcchhhhhhhHHHHHHHhhcCCccchhccCccc-cchhHHHHHhhhHhhhCchhh
Confidence 33566689999999999999999 9999999999 599999999999999988886
No 17
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=97.22 E-value=0.00086 Score=49.33 Aligned_cols=49 Identities=33% Similarity=0.527 Sum_probs=43.2
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCc
Q 034117 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99 (103)
Q Consensus 50 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~ 99 (103)
+-|.+..|-+|||..|+++.-+.|++.+|++ +..|.-...+..|...+.
T Consensus 117 kPPEKRqR~psaYn~f~k~ei~rik~~~p~i-shkeaFs~aAknW~h~ph 165 (170)
T PF04690_consen 117 KPPEKRQRVPSAYNRFMKEEIQRIKAENPDI-SHKEAFSAAAKNWAHFPH 165 (170)
T ss_pred CCccccCCCchhHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHhhhhCcc
Confidence 4456666888999999999999999999999 699999999999988753
No 18
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=96.22 E-value=0.006 Score=45.31 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=34.5
Q ss_pred CchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 59 ~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
-++|+-|+.++|.. |.+| +..|+....+..|..|+++||
T Consensus 83 nnaYLNFLReFRrk----h~~L-~p~dlI~~AAraW~rLSe~eK 121 (183)
T PF06382_consen 83 NNAYLNFLREFRRK----HCGL-SPQDLIQRAARAWCRLSEAEK 121 (183)
T ss_pred chHHHHHHHHHHHH----ccCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 36799999999884 5789 599999999999999999886
No 19
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.92 E-value=0.011 Score=36.19 Aligned_cols=40 Identities=20% Similarity=0.392 Sum_probs=35.5
Q ss_pred CchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCc
Q 034117 59 PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99 (103)
Q Consensus 59 ~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~ 99 (103)
++.|=+|.+..|+.|...||++. ...|...++.+|++-++
T Consensus 13 lt~yK~Fsq~vRP~l~~~NPk~~-~sKl~~l~~AKwrEF~~ 52 (55)
T PF08073_consen 13 LTNYKAFSQHVRPLLAKANPKAP-MSKLMMLLQAKWREFQE 52 (55)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCc-HHHHHHHHHHHHHHHHh
Confidence 46788999999999999999995 99999999999987543
No 20
>PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A.
Probab=95.04 E-value=0.046 Score=35.83 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=37.4
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCccccC
Q 034117 54 KPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVSI 103 (103)
Q Consensus 54 ~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER~ 103 (103)
.|..|-++--+|.+.....+...|++. ...+ .+.+...|.+|++.+||
T Consensus 3 lPE~PKt~qe~Wqq~vi~dYla~~~~d-r~K~-~kam~~~W~~me~Kekl 50 (85)
T PF14887_consen 3 LPETPKTAQEIWQQSVIGDYLAKFRND-RKKA-LKAMEAQWSQMEKKEKL 50 (85)
T ss_dssp -S----THHHHHHHHHHHHHHHHTTST-HHHH-HHHHHHHHHTTGGGHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhHh-HHHH-HHHHHHHHHHhhhhhhh
Confidence 466788999999999999999999988 4656 45899999999998875
No 21
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=92.98 E-value=0.2 Score=35.04 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=39.7
Q ss_pred CCCCCC-chhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcc
Q 034117 54 KPKRPP-SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100 (103)
Q Consensus 54 ~PKRP~-say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~e 100 (103)
+|-|.+ -||.-|....-+.|+.+||+|. .+.+-.+|-..|..-+++
T Consensus 71 HPErR~KAAy~afeE~~Lp~lK~E~PgLr-lsQ~kq~l~K~w~KSPeN 117 (122)
T PF06244_consen 71 HPERRMKAAYKAFEERRLPELKEENPGLR-LSQYKQMLWKEWQKSPEN 117 (122)
T ss_pred CcchhHHHHHHHHHHHHhHHHHhhCCCch-HHHHHHHHHHHHhcCCCC
Confidence 455555 6899999999999999999996 999999999999887653
No 22
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=92.82 E-value=0.26 Score=37.08 Aligned_cols=42 Identities=21% Similarity=0.452 Sum_probs=33.8
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhC
Q 034117 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKS 96 (103)
Q Consensus 50 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~ 96 (103)
.....++||+|+||.|+.=+- ...|+.+ ..++|..|+..|..
T Consensus 39 ~~~~~~kr~lN~Fm~FRsyy~----~~~~~~~-Qk~~S~~l~~lW~~ 80 (201)
T PF04769_consen 39 RSPEKAKRPLNGFMAFRSYYS----PIFPPLP-QKELSGILTKLWEK 80 (201)
T ss_pred ccccccccchhHHHHHHHHHH----hhcCCcC-HHHHHHHHHHHHhC
Confidence 455678999999999987665 3457774 88999999999975
No 23
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=87.99 E-value=0.22 Score=37.90 Aligned_cols=49 Identities=16% Similarity=0.257 Sum_probs=42.5
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcc
Q 034117 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100 (103)
Q Consensus 51 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~e 100 (103)
..-+++.|..+|+-|..+.|+.+...+|.. +..+++++++..|.+|+++
T Consensus 140 ~k~~~~~~~~~~~e~~~~~r~~~~~~~~~~-~~~e~~k~~~~~w~el~~s 188 (211)
T COG5648 140 KKLPNKAPIGPFIENEPKIRPKVEGPSPDK-ALVEETKIISKAWSELDES 188 (211)
T ss_pred cccCCCCCCchhhhccHHhccccCCCCcch-hhhHHhhhhhhhhhhhChh
Confidence 344677888889999999999999889888 5889999999999999875
No 24
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.96 E-value=4.1 Score=30.98 Aligned_cols=46 Identities=26% Similarity=0.422 Sum_probs=37.6
Q ss_pred CCCCC-CchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcc
Q 034117 54 KPKRP-PSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100 (103)
Q Consensus 54 ~PKRP-~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~e 100 (103)
.|-+- .-+|.-|-..+-+.|+.+||++. .++.-.+|-.+|..-|+.
T Consensus 163 HPEkRmrAA~~afEe~~LPrLK~e~P~lr-lsQ~Kqll~Kew~KsPDN 209 (221)
T KOG3223|consen 163 HPEKRMRAAFKAFEEARLPRLKKENPGLR-LSQYKQLLKKEWQKSPDN 209 (221)
T ss_pred ChHHHHHHHHHHHHHhhchhhhhcCCCcc-HHHHHHHHHHHHhhCCCC
Confidence 44333 45688999999999999999995 999999999999877653
No 25
>PRK15117 ABC transporter periplasmic binding protein MlaC; Provisional
Probab=49.59 E-value=22 Score=26.45 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=20.0
Q ss_pred CCCCcHHHHHH-HHHHHhhCCCcccc
Q 034117 78 PNVTAVSAVGK-AAGGKWKSMSPAVS 102 (103)
Q Consensus 78 P~~~s~~eisK-~lge~Wk~Ls~eER 102 (103)
|.. ++..+++ .||..|+.++++||
T Consensus 66 p~~-Df~~~s~~vLG~~wr~as~eQr 90 (211)
T PRK15117 66 PYV-QVKYAGALVLGRYYKDATPAQR 90 (211)
T ss_pred ccC-CHHHHHHHHhhhhhhhCCHHHH
Confidence 666 5888876 78999999999986
No 26
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=42.62 E-value=16 Score=27.03 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=19.1
Q ss_pred CCCcHHHHHH-HHHHHhhCCCcccc
Q 034117 79 NVTAVSAVGK-AAGGKWKSMSPAVS 102 (103)
Q Consensus 79 ~~~s~~eisK-~lge~Wk~Ls~eER 102 (103)
.. ++..|++ .||..|+.+|++||
T Consensus 63 ~~-Df~~mar~vLG~~W~~~s~~Qr 86 (198)
T TIGR03481 63 AF-DLPAMARLTLGSSWTSLSPEQR 86 (198)
T ss_pred hC-CHHHHHHHHhhhhhhhCCHHHH
Confidence 45 5888876 78999999999986
No 27
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=35.87 E-value=84 Score=17.67 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCCc-----HHHHHHHHHHHhhCCCcccc
Q 034117 66 LEEFRKTFKKENPNVTA-----VSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 66 ~~e~R~~ik~e~P~~~s-----~~eisK~lge~Wk~Ls~eER 102 (103)
...++..++.-||+... ..+....|.+.|..|.+..+
T Consensus 19 k~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~~ 60 (60)
T smart00271 19 KKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPEK 60 (60)
T ss_pred HHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCCC
Confidence 35666666777888742 34688889999998877643
No 28
>PF13875 DUF4202: Domain of unknown function (DUF4202)
Probab=34.41 E-value=73 Score=23.81 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=28.8
Q ss_pred hhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcc
Q 034117 61 AFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPA 100 (103)
Q Consensus 61 ay~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~e 100 (103)
+.++|...+-..+...|. -.-+..+|..-|+.||+.
T Consensus 131 acLVFL~~~f~~F~~~~d----eeK~v~Il~KTw~KMS~~ 166 (185)
T PF13875_consen 131 ACLVFLEYYFEDFAAKHD----EEKIVDILRKTWRKMSER 166 (185)
T ss_pred HHHHhHHHHHHHHHhcCC----HHHHHHHHHHHHHHCCHH
Confidence 478999999999988772 445667778889999975
No 29
>PF15076 DUF4543: Domain of unknown function (DUF4543)
Probab=33.89 E-value=39 Score=21.54 Aligned_cols=25 Identities=16% Similarity=0.507 Sum_probs=18.7
Q ss_pred cCCCCCCCCCCCchhHhHHHHHHHH
Q 034117 48 AKKDPNKPKRPPSAFFVFLEEFRKT 72 (103)
Q Consensus 48 k~kdp~~PKRP~say~lF~~e~R~~ 72 (103)
....++.|--||.-||+|++.--..
T Consensus 25 r~~K~GfpdepmrE~ml~l~~Leqr 49 (75)
T PF15076_consen 25 RPRKPGFPDEPMREYMLHLQALEQR 49 (75)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHH
Confidence 3446788999999999999754433
No 30
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=33.60 E-value=1.3e+02 Score=19.08 Aligned_cols=33 Identities=6% Similarity=0.261 Sum_probs=24.9
Q ss_pred chhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 034117 60 SAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGK 93 (103)
Q Consensus 60 say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~ 93 (103)
+.|.-|-+-.+..++...|++ +..+|...+.++
T Consensus 9 ~tFtEyKKrL~e~l~~k~P~a-t~~~l~~lve~R 41 (68)
T PF09164_consen 9 NTFTEYKKRLAERLRAKLPDA-TPTELKELVEKR 41 (68)
T ss_dssp S-HHHHHHHHHHHHHHH-TTS--HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHH
Confidence 568889999999999999999 588887766543
No 31
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=30.82 E-value=26 Score=20.47 Aligned_cols=15 Identities=33% Similarity=0.621 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhCCCcccc
Q 034117 83 VSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 83 ~~eisK~lge~Wk~Ls~eER 102 (103)
..||.. |..|+++||
T Consensus 24 ~dEI~~-----W~~~s~~er 38 (51)
T PF06945_consen 24 LDEIRD-----WKSMSDDER 38 (51)
T ss_pred HHHHHH-----HhhCCHHHH
Confidence 667765 999998886
No 32
>PF15581 Imm35: Immunity protein 35
Probab=29.24 E-value=45 Score=22.29 Aligned_cols=19 Identities=5% Similarity=0.338 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhhCCCccc
Q 034117 83 VSAVGKAAGGKWKSMSPAV 101 (103)
Q Consensus 83 ~~eisK~lge~Wk~Ls~eE 101 (103)
+.-+...|.+.|+.|+++|
T Consensus 32 i~~l~~lIe~eWRGl~~~q 50 (93)
T PF15581_consen 32 IRNLESLIEHEWRGLPEEQ 50 (93)
T ss_pred HHHHHHHHHHHHcCCCHHH
Confidence 5567788999999999876
No 33
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=28.45 E-value=65 Score=17.64 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=14.9
Q ss_pred HHhCCCCCcHHHHHHHHHHHhh
Q 034117 74 KKENPNVTAVSAVGKAAGGKWK 95 (103)
Q Consensus 74 k~e~P~~~s~~eisK~lge~Wk 95 (103)
..++|.+ +..||+..+|-.+.
T Consensus 12 l~~~~~~-t~~ela~~~~is~~ 32 (48)
T PF13412_consen 12 LRENPRI-TQKELAEKLGISRS 32 (48)
T ss_dssp HHHCTTS--HHHHHHHHTS-HH
T ss_pred HHHcCCC-CHHHHHHHhCCCHH
Confidence 4568999 69999998875443
No 34
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=27.83 E-value=92 Score=20.81 Aligned_cols=29 Identities=14% Similarity=0.382 Sum_probs=14.9
Q ss_pred HHHhCCCCCcHHHHHHHHH--HHhhCCCcccc
Q 034117 73 FKKENPNVTAVSAVGKAAG--GKWKSMSPAVS 102 (103)
Q Consensus 73 ik~e~P~~~s~~eisK~lg--e~Wk~Ls~eER 102 (103)
+...++.+ +..+-.+... ..|.+||+++|
T Consensus 34 ~a~r~~~m-speqq~r~~~rm~~W~~LspeqR 64 (107)
T PF11304_consen 34 IAERWPSM-SPEQQQRLRERMRRWAALSPEQR 64 (107)
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHHHhCCHHHH
Confidence 44455566 3444333332 36777766664
No 35
>PF05494 Tol_Tol_Ttg2: Toluene tolerance, Ttg2 ; InterPro: IPR008869 Toluene tolerance is mediated by increased cell membrane rigidity resulting from changes in fatty acid and phospholipid compositions, exclusion of toluene from the cell membrane, and removal of intracellular toluene by degradation []. Many proteins are involved in these processes. This family is a transporter which shows similarity to ABC transporters [].; PDB: 2QGU_A.
Probab=27.23 E-value=43 Score=23.52 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=17.0
Q ss_pred CCCCcHHHHHH-HHHHHhhCCCcccc
Q 034117 78 PNVTAVSAVGK-AAGGKWKSMSPAVS 102 (103)
Q Consensus 78 P~~~s~~eisK-~lge~Wk~Ls~eER 102 (103)
|.. .+..|++ .||..|+.|+++|+
T Consensus 36 ~~~-D~~~~ar~~LG~~w~~~s~~q~ 60 (170)
T PF05494_consen 36 PYF-DFERMARRVLGRYWRKASPAQR 60 (170)
T ss_dssp GGB--HHHHHHHHHGGGTTTS-HHHH
T ss_pred HhC-CHHHHHHHHHHHhHhhCCHHHH
Confidence 455 5777774 57889999999886
No 36
>PRK10236 hypothetical protein; Provisional
Probab=23.76 E-value=42 Score=26.05 Aligned_cols=18 Identities=17% Similarity=0.320 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhCCCcccc
Q 034117 85 AVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 85 eisK~lge~Wk~Ls~eER 102 (103)
-+.+.+...|..||++|+
T Consensus 117 il~kll~~a~~kms~eE~ 134 (237)
T PRK10236 117 LLEQFLRNTWKKMDEEHK 134 (237)
T ss_pred HHHHHHHHHHHHCCHHHH
Confidence 467899999999999986
No 37
>PHA03102 Small T antigen; Reviewed
Probab=22.99 E-value=1e+02 Score=22.11 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCccc
Q 034117 65 FLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAV 101 (103)
Q Consensus 65 F~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eE 101 (103)
-.+.+|..++.-||+.....+..+.|.+.|..|++..
T Consensus 24 IKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~ 60 (153)
T PHA03102 24 MRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESV 60 (153)
T ss_pred HHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHH
Confidence 3456777778889987445678889999998887654
No 38
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=21.46 E-value=4.5 Score=35.34 Aligned_cols=41 Identities=24% Similarity=0.420 Sum_probs=37.4
Q ss_pred CCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCc
Q 034117 58 PPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99 (103)
Q Consensus 58 P~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~ 99 (103)
-..+|++|..+.+..+-.++|+. .+++++.+.|..|..|+.
T Consensus 552 ~~~~~~~~s~~~~~~~~~~np~v-~~~~~~~~vg~~~~~lp~ 592 (629)
T KOG1827|consen 552 SPEPYILDSIENRTIIWFENPTV-GFGEVSIIVGNDWDKLPN 592 (629)
T ss_pred CCccccccccccCceeeeeCCCc-ccceeEEeecCCcccCcc
Confidence 34789999999999999999999 599999999999999984
Done!