Query 034117
Match_columns 103
No_of_seqs 137 out of 1183
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 16:56:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034117.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034117hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wgf_A Upstream binding factor 99.8 7.5E-21 2.6E-25 123.7 6.0 58 44-102 10-67 (90)
2 2lhj_A High mobility group pro 99.8 1.2E-20 4E-25 124.2 3.7 60 42-102 10-71 (97)
3 2co9_A Thymus high mobility gr 99.8 6E-20 2E-24 122.0 6.6 57 45-102 8-64 (102)
4 1k99_A Upstream binding factor 99.8 3.4E-20 1.2E-24 122.8 5.3 56 46-102 2-57 (99)
5 2d7l_A WD repeat and HMG-box D 99.8 8.7E-20 3E-24 117.6 6.2 52 50-102 1-53 (81)
6 1hme_A High mobility group pro 99.8 1.1E-19 3.9E-24 114.2 6.5 53 49-102 1-53 (77)
7 2eqz_A High mobility group pro 99.8 1E-19 3.5E-24 117.2 6.4 57 46-102 7-64 (86)
8 1cg7_A Protein (NON histone pr 99.8 1.6E-20 5.5E-25 122.8 1.5 58 44-102 10-67 (93)
9 2e6o_A HMG box-containing prot 99.8 1.7E-19 5.9E-24 116.4 5.4 55 47-102 10-64 (87)
10 1hry_A Human SRY; DNA, DNA-bin 99.8 2.3E-19 7.8E-24 112.6 5.0 51 51-102 1-51 (76)
11 2crj_A SWI/SNF-related matrix- 99.8 4.2E-19 1.4E-23 115.7 6.4 52 50-102 3-54 (92)
12 1aab_A High mobility group pro 99.8 3.3E-19 1.1E-23 113.8 3.2 54 49-102 2-56 (83)
13 2cs1_A PMS1 protein homolog 1; 99.7 1.7E-18 5.7E-23 112.8 6.1 52 50-102 3-54 (92)
14 1j46_A SRY, sex-determining re 99.7 2E-18 6.8E-23 110.9 6.1 51 51-102 1-51 (85)
15 1wz6_A HMG-box transcription f 99.7 1.8E-18 6.3E-23 110.1 5.6 52 50-102 3-54 (82)
16 1i11_A Transcription factor SO 99.7 5.9E-18 2E-22 107.5 6.1 50 52-102 2-51 (81)
17 3nm9_A HMG-D, high mobility gr 99.7 7.3E-18 2.5E-22 105.4 6.0 47 52-99 1-47 (73)
18 1wxl_A Single-strand recogniti 99.7 8.6E-18 2.9E-22 105.0 6.2 45 52-97 1-45 (73)
19 3f27_D Transcription factor SO 99.7 5.2E-18 1.8E-22 108.0 5.0 51 51-102 3-53 (83)
20 1ckt_A High mobility group 1 p 99.7 1.1E-17 3.6E-22 103.6 5.9 49 54-102 1-50 (71)
21 4euw_A Transcription factor SO 99.7 8.8E-18 3E-22 112.4 5.9 53 49-102 24-76 (106)
22 2gzk_A Sex-determining region 99.7 9.3E-18 3.2E-22 117.9 6.3 56 46-102 80-135 (159)
23 4a3n_A Transcription factor SO 99.7 5.3E-18 1.8E-22 104.6 4.3 49 53-102 1-49 (71)
24 1gt0_D Transcription factor SO 99.7 9.8E-18 3.4E-22 106.1 5.3 49 53-102 1-49 (80)
25 2lef_A LEF-1 HMG, protein (lym 99.7 1.8E-17 6.1E-22 106.5 5.8 49 53-102 1-49 (86)
26 3u2b_C Transcription factor SO 99.7 1.2E-17 4.1E-22 105.2 4.8 49 53-102 1-49 (79)
27 2yrq_A High mobility group pro 99.7 4.3E-17 1.5E-21 116.1 6.4 55 47-102 94-148 (173)
28 2yrq_A High mobility group pro 99.7 7.6E-17 2.6E-21 114.8 6.0 55 47-102 8-64 (173)
29 1v64_A Nucleolar transcription 99.6 1.2E-16 4.3E-21 107.3 4.1 52 46-102 8-60 (108)
30 2yuk_A Myeloid/lymphoid or mix 99.6 5.8E-18 2E-22 111.5 -2.8 52 46-102 14-67 (90)
31 2cto_A Novel protein; high mob 99.6 1.9E-16 6.6E-21 104.6 2.4 50 50-102 6-58 (93)
32 3fgh_A Transcription factor A, 99.6 5.2E-16 1.8E-20 95.3 3.1 45 53-102 1-45 (67)
33 1l8y_A Upstream binding factor 99.6 2E-15 6.8E-20 99.6 5.6 49 52-102 2-50 (91)
34 3tmm_A Transcription factor A, 99.6 9.6E-16 3.3E-20 114.8 3.3 53 49-102 36-88 (238)
35 3tq6_A Transcription factor A, 99.6 1.4E-15 4.9E-20 112.4 4.0 51 51-102 6-56 (214)
36 1v63_A Nucleolar transcription 99.5 8.2E-15 2.8E-19 97.3 5.0 50 50-102 4-53 (101)
37 2gzk_A Sex-determining region 99.5 3.7E-14 1.3E-18 99.4 5.6 50 52-102 2-51 (159)
38 3tq6_A Transcription factor A, 99.4 3.4E-15 1.2E-19 110.3 -2.4 52 46-102 106-157 (214)
39 3tmm_A Transcription factor A, 99.4 6E-15 2E-19 110.5 -1.8 52 46-102 138-189 (238)
40 3mhp_C TIC62_peptide, ferredox 31.5 14 0.00048 18.5 0.5 11 55-65 2-12 (26)
No 1
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.83 E-value=7.5e-21 Score=123.70 Aligned_cols=58 Identities=31% Similarity=0.575 Sum_probs=54.1
Q ss_pred cccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 44 k~kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
+.+++.+||+.|+||+|||||||+++|..|+.+||++ ++.||+++||++|++|+++||
T Consensus 10 k~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK 67 (90)
T 1wgf_A 10 SQEGGKGGSEKPKRPVSAMFIFSEEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKK 67 (90)
T ss_dssp CSCCCSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHH
T ss_pred CcCcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 4456678999999999999999999999999999999 699999999999999999886
No 2
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=99.81 E-value=1.2e-20 Score=124.16 Aligned_cols=60 Identities=43% Similarity=0.730 Sum_probs=55.5
Q ss_pred cccccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhhCCCcccc
Q 034117 42 GKREKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA--VSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 42 ~~k~kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s--~~eisK~lge~Wk~Ls~eER 102 (103)
++++++..+||+.|+||+||||||++++|..|+.+||++ + +.||+++||++|++|+++||
T Consensus 10 k~~~~k~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~-~~~~~eisk~lg~~Wk~ls~eeK 71 (97)
T 2lhj_A 10 VRRPRKAKKDPNAPKRALSSYMFFAKEKRVEIIAENPEI-AKDVAAIGKMIGAAWNALSDEEK 71 (97)
T ss_dssp CCCTTCTTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTS-TTCSSHHHHHHHHTSSSSCSTTT
T ss_pred ccccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CccHHHHHHHHHHHHHhCCHHHH
Confidence 345566778999999999999999999999999999999 7 99999999999999999987
No 3
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=6e-20 Score=121.97 Aligned_cols=57 Identities=33% Similarity=0.659 Sum_probs=53.2
Q ss_pred ccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 45 EKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 45 ~kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
++++.+||+.|+||+||||||++++|..|+.+||++ ++.||+++||++|++|+++||
T Consensus 8 ~kk~~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~-~~~eisk~lg~~Wk~ls~eeK 64 (102)
T 2co9_A 8 KKKKKKDPNEPQKPVSAYALFFRDTQAAIKGQNPNA-TFGEVSKIVASMWDGLGEEQK 64 (102)
T ss_dssp SCSSCCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHccCCHHHH
Confidence 345668999999999999999999999999999999 599999999999999999986
No 4
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=99.80 E-value=3.4e-20 Score=122.80 Aligned_cols=56 Identities=30% Similarity=0.515 Sum_probs=52.7
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 46 kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
+++.+||+.||||+|||||||+++|..|+.+||++ ++.||+++||++|++||++||
T Consensus 2 kkk~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~-~~~eisk~lg~~Wk~ls~eeK 57 (99)
T 1k99_A 2 KKLKKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEM-SNLDLTKILSKKYKELPEKKK 57 (99)
T ss_dssp CCCCSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTS-CSHHHHHHHHHHHHHSCSTTH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 44568999999999999999999999999999999 699999999999999999986
No 5
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=8.7e-20 Score=117.57 Aligned_cols=52 Identities=21% Similarity=0.367 Sum_probs=49.7
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCc-HHHHHHHHHHHhhCCCcccc
Q 034117 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA-VSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 50 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s-~~eisK~lge~Wk~Ls~eER 102 (103)
.++|.||||+|||||||+++|..|+.+||++ + +.||+++||++|++|+++||
T Consensus 1 ~~~~~PKRP~say~lF~~e~R~~ik~~~P~~-~~~~eisK~lge~Wk~ls~eeK 53 (81)
T 2d7l_A 1 GSSGSSGRPKTGFQMWLEENRSNILSDNPDF-SDEADIIKEGMIRFRVLSTEER 53 (81)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHHHCTTC-CSHHHHHHHHHHHHSSSCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-chhHHHHHHHHHHHHcCCHHHH
Confidence 3789999999999999999999999999999 7 99999999999999999886
No 6
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=99.79 E-value=1.1e-19 Score=114.24 Aligned_cols=53 Identities=43% Similarity=0.822 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 49 ~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
++||+.|+||+||||||++++|..|+.+||++ ++.||+++||++|++||++||
T Consensus 1 kkdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK 53 (77)
T 1hme_A 1 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDK 53 (77)
T ss_dssp CCCSSCCCCCCCTTHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHHSCGGGS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 36999999999999999999999999999999 699999999999999999987
No 7
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1e-19 Score=117.16 Aligned_cols=57 Identities=37% Similarity=0.585 Sum_probs=52.0
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhhCCCcccc
Q 034117 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 46 kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~-s~~eisK~lge~Wk~Ls~eER 102 (103)
++..+||+.||||+||||||++++|..|+.+||++. ++.||+++||++|++|+++||
T Consensus 7 ~~~~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 64 (86)
T 2eqz_A 7 GMAKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEK 64 (86)
T ss_dssp SCSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHH
Confidence 345689999999999999999999999999999984 269999999999999999986
No 8
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=99.79 E-value=1.6e-20 Score=122.78 Aligned_cols=58 Identities=43% Similarity=0.799 Sum_probs=54.0
Q ss_pred cccccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 44 REKKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 44 k~kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
++++..+||+.|+||+||||||++++|..|..+||++ ++.||+++||++|++||++||
T Consensus 10 ~~~k~~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK 67 (93)
T 1cg7_A 10 RTTRKKKDPNAPKRALSAYMFFANENRDIVRSENPDI-TFGQVGKKLGEKWKALTPEEK 67 (93)
T ss_dssp CCCCCCCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTS-CHHHHTTTHHHHHHTTHHHHH
T ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 4456678999999999999999999999999999999 699999999999999999886
No 9
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=116.44 Aligned_cols=55 Identities=29% Similarity=0.555 Sum_probs=52.0
Q ss_pred ccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 47 kk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
+..+||+.|+||+||||||++++|..|+.+||++ ++.||+++||++|++|+++||
T Consensus 10 ~~~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK 64 (87)
T 2e6o_A 10 VSATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEER 64 (87)
T ss_dssp CCCCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHH
Confidence 4567999999999999999999999999999999 599999999999999999986
No 10
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=99.77 E-value=2.3e-19 Score=112.60 Aligned_cols=51 Identities=31% Similarity=0.540 Sum_probs=47.5
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 51 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
||+.|+||+||||||++++|..|+.+||++ ++.||+++||++|++|+++||
T Consensus 1 dp~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK 51 (76)
T 1hry_A 1 VQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEK 51 (76)
T ss_dssp --CCCCCCCCHHHHHHHHHHHHHHHHCSCC-SSSHHHHHHHHHHHTCCHHHH
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHhHHHhCCHHHH
Confidence 689999999999999999999999999999 599999999999999999986
No 11
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=99.77 E-value=4.2e-19 Score=115.70 Aligned_cols=52 Identities=25% Similarity=0.608 Sum_probs=50.3
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 50 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
+||+.||||+||||||++++|..|+.+||++ ++.||+++||++|++|+++||
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK 54 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDL-PFPEITKMLGAEWSKLQPAEK 54 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTC-CHHHHHHHHHHHHHTCCTTHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 6999999999999999999999999999999 599999999999999999986
No 12
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=99.75 E-value=3.3e-19 Score=113.81 Aligned_cols=54 Identities=31% Similarity=0.593 Sum_probs=50.1
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhhCCCcccc
Q 034117 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 49 ~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~-s~~eisK~lge~Wk~Ls~eER 102 (103)
++||+.||||+|||||||+++|..|+.+||++. ++.||+++||++|++|+++||
T Consensus 2 kkdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 56 (83)
T 1aab_A 2 KGDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 56 (83)
T ss_dssp CCCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHH
Confidence 379999999999999999999999999999984 259999999999999999986
No 13
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=112.81 Aligned_cols=52 Identities=25% Similarity=0.402 Sum_probs=49.9
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 50 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
.++++||||+||||+|++++|..|+.+||++ ++.||+++||++|++|+++||
T Consensus 3 ~~p~~pKrP~say~lF~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK 54 (92)
T 2cs1_A 3 SGSSGIKKPMSASALFVQDHRPQFLIENPKT-SLEDATLQIEELWKTLSEEEK 54 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCCSS-CHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHH
Confidence 5899999999999999999999999999999 599999999999999999986
No 14
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=99.74 E-value=2e-18 Score=110.89 Aligned_cols=51 Identities=31% Similarity=0.539 Sum_probs=48.8
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 51 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
.||.|+||+||||||++++|..|..+||++ ++.||+++||++|++||++||
T Consensus 1 ~p~~pKRP~~af~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK 51 (85)
T 1j46_A 1 MQDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEK 51 (85)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHTTSCHHHH
T ss_pred CcCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHH
Confidence 479999999999999999999999999999 699999999999999999986
No 15
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=99.74 E-value=1.8e-18 Score=110.10 Aligned_cols=52 Identities=21% Similarity=0.471 Sum_probs=49.8
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 50 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
.|++.|+||+||||||++++|..|+.+||++ ++.||+++||++|++|+++||
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK 54 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRL-DNRGATKILADWWAVLDPKEK 54 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSS-CTTHHHHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHH
Confidence 5889999999999999999999999999999 599999999999999999886
No 16
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.73 E-value=5.9e-18 Score=107.53 Aligned_cols=50 Identities=28% Similarity=0.522 Sum_probs=47.3
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 52 p~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
++.|+||+||||||++++|..|..+||++ ++.||+++||++|++|+++||
T Consensus 2 ~~~pkRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK 51 (81)
T 1i11_A 2 SPHIKRPMNAFMVWAKDERRKILQAFPDM-HNSNISKILGSRWKAMTNLEK 51 (81)
T ss_dssp -CCSCCSCCHHHHHHHHHHHHHHTTCSSC-CHHHHHHHHHHHHTTSCSGGG
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHhhhhhCCHHHH
Confidence 57899999999999999999999999999 599999999999999999986
No 17
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=99.72 E-value=7.3e-18 Score=105.37 Aligned_cols=47 Identities=40% Similarity=0.793 Sum_probs=45.1
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCc
Q 034117 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSP 99 (103)
Q Consensus 52 p~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~ 99 (103)
.|+||||+|||||||+++|..|+.+||++ ++.||+++||++|++|++
T Consensus 1 s~~PKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~ 47 (73)
T 3nm9_A 1 SDKPKRPLSAYALWLNSARESIKRENPGI-KVTEVAKRGGELWRAMKD 47 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHCSC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCc
Confidence 47899999999999999999999999999 699999999999999987
No 18
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=99.72 E-value=8.6e-18 Score=105.04 Aligned_cols=45 Identities=36% Similarity=0.803 Sum_probs=43.9
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCC
Q 034117 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSM 97 (103)
Q Consensus 52 p~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~L 97 (103)
||.||||+||||+|++++|..|+.+||++ ++.||+++||++|++|
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGI-KVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999 6999999999999999
No 19
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=99.72 E-value=5.2e-18 Score=107.96 Aligned_cols=51 Identities=27% Similarity=0.544 Sum_probs=45.7
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 51 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
.++.|+||+||||||++++|..|..+||++ ++.||+++||++|++|+++||
T Consensus 3 ~~~~pKrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK 53 (83)
T 3f27_D 3 FTSRIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEK 53 (83)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHH
Confidence 467899999999999999999999999999 599999999999999999986
No 20
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=99.71 E-value=1.1e-17 Score=103.56 Aligned_cols=49 Identities=29% Similarity=0.564 Sum_probs=45.7
Q ss_pred CCCCCCchhHhHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhhCCCcccc
Q 034117 54 KPKRPPSAFFVFLEEFRKTFKKENPNVT-AVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 54 ~PKRP~say~lF~~e~R~~ik~e~P~~~-s~~eisK~lge~Wk~Ls~eER 102 (103)
+||||+||||+|++++|..++.+||++. ++.||+++||++|++|+++||
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK 50 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEK 50 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTS
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHH
Confidence 5999999999999999999999999984 259999999999999999986
No 21
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=99.71 E-value=8.8e-18 Score=112.36 Aligned_cols=53 Identities=23% Similarity=0.486 Sum_probs=47.6
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 49 ~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
.++++.|+||+|||||||+++|..|+.+||++ ++.||+++||++|++|+++||
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK 76 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHL-HNAELSKTLGKLWRLLNESEK 76 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHTTCCHHHH
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence 46899999999999999999999999999999 699999999999999999986
No 22
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.71 E-value=9.3e-18 Score=117.86 Aligned_cols=56 Identities=45% Similarity=0.814 Sum_probs=52.6
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 46 kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
++..+||+.||||+|||||||+++|..|+.+||++ +++||+++||++|++|+++||
T Consensus 80 kk~~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK 135 (159)
T 2gzk_A 80 KKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDK 135 (159)
T ss_dssp GGGSCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCC-CHHHHHHHHHHHHHHSCHHHH
T ss_pred cccccccccccccccccchhhHhhHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 44568999999999999999999999999999999 699999999999999999886
No 23
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=99.71 E-value=5.3e-18 Score=104.63 Aligned_cols=49 Identities=29% Similarity=0.575 Sum_probs=43.7
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 53 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
+.||||+||||||++++|..+..+||++ ++.||+++||++|++||++||
T Consensus 1 gk~krP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK 49 (71)
T 4a3n_A 1 GSIRRPMNAFMVWAKDERKRLAQQNPDL-HNAELSKMLGKSWKALTLAEK 49 (71)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHH
Confidence 4799999999999999999999999999 599999999999999999986
No 24
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=99.71 E-value=9.8e-18 Score=106.13 Aligned_cols=49 Identities=33% Similarity=0.603 Sum_probs=46.8
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 53 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
+.|+||+||||||++++|..|..+||++ ++.||+++||++|++||++||
T Consensus 1 ~~pkrP~~af~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~eeK 49 (80)
T 1gt0_D 1 DRVKRPMNAFMVWSRGQRRKMAQENPKM-HNSEISKRLGAEWKLLSETEK 49 (80)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHTTSCHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 5799999999999999999999999999 599999999999999999986
No 25
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=1.8e-17 Score=106.48 Aligned_cols=49 Identities=22% Similarity=0.476 Sum_probs=46.6
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 53 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
..|+||+||||||++++|..|..+||++ ++.||+++||++|++||++||
T Consensus 1 ~~pKRP~naf~lf~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK 49 (86)
T 2lef_A 1 MHIKKPLNAFMLYMKEMRANVVAESTLK-ESAAINQILGRRWHALSREEQ 49 (86)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHH
Confidence 3699999999999999999999999999 699999999999999999986
No 26
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=99.70 E-value=1.2e-17 Score=105.20 Aligned_cols=49 Identities=24% Similarity=0.495 Sum_probs=46.8
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 53 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
+.||||+||||||++++|..|..+||++ ++.||+++||++|++|+++||
T Consensus 1 G~iKRP~naf~lf~~~~r~~~~~~~p~~-~~~eisk~lg~~Wk~ls~~eK 49 (79)
T 3u2b_C 1 GHIKRPMNAFMVWSQIERRKIMEQSPDM-HNAEISKRLGKRWKLLKDSDK 49 (79)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHTTSTTS-CHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 5799999999999999999999999999 599999999999999999986
No 27
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=116.13 Aligned_cols=55 Identities=44% Similarity=0.809 Sum_probs=51.9
Q ss_pred ccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 47 kk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
++.+||+.|+||+|||||||+++|..|..+||++ ++.||+++||++|++|+++|+
T Consensus 94 k~~kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~-~~~ei~k~lg~~Wk~ls~~eK 148 (173)
T 2yrq_A 94 KKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGL-SIGDVAKKLGEMWNNTAADDK 148 (173)
T ss_dssp CSCCCSSSCCCCCCHHHHHHHHHHHHHHHHCSSS-CHHHHHHHHHHHHHHSCGGGH
T ss_pred ccccCCccccCcccHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 4557999999999999999999999999999999 599999999999999999986
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.6e-17 Score=114.83 Aligned_cols=55 Identities=33% Similarity=0.600 Sum_probs=51.4
Q ss_pred ccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHhhCCCcccc
Q 034117 47 KAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPN--VTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 47 kk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~--~~s~~eisK~lge~Wk~Ls~eER 102 (103)
...+||+.|+||+||||||++++|..|+.+||+ + ++.||+++||++|++|+++|+
T Consensus 8 ~~k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~-~~~eisk~lg~~Wk~ls~~eK 64 (173)
T 2yrq_A 8 MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASV-NFSEFSKKCSERWKTMSAKEK 64 (173)
T ss_dssp SSSCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCC-CHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 455799999999999999999999999999999 5 599999999999999999886
No 29
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.63 E-value=1.2e-16 Score=107.34 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=47.3
Q ss_pred cccCCCCCCC-CCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 46 KKAKKDPNKP-KRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 46 kkk~kdp~~P-KRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
.++.+|++.| |||+|||||||+++|..|+ ++ ++.||++.||++|++|+++||
T Consensus 8 ~kk~kd~~~P~KrP~say~lF~~e~r~~~k----~~-~~~eisk~lg~~Wk~Ls~~eK 60 (108)
T 1v64_A 8 QLKDKFDGRPTKPPPNSYSLYCAELMANMK----DV-PSTERMVLCSQQWKLLSQKEK 60 (108)
T ss_dssp CSSCCTTTSCCCCCSSHHHHHHHHHHHHCT----TS-CHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCCCCCCCCCCCCHHHHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhCCHHHH
Confidence 3456799999 9999999999999999887 78 599999999999999999986
No 30
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.63 E-value=5.8e-18 Score=111.51 Aligned_cols=52 Identities=17% Similarity=0.195 Sum_probs=47.7
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhhCCCcccc
Q 034117 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTA--VSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 46 kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s--~~eisK~lge~Wk~Ls~eER 102 (103)
.+..+|||+||||+|||||||+++|..|+.+||++ + +.||+ ++|++|+++||
T Consensus 14 ~k~~kDpnaPKRp~sAf~lf~~e~R~kik~enP~~-s~~~~eIs----e~Wk~ls~eeK 67 (90)
T 2yuk_A 14 LKWEKEEALGEMATVAPVLYTNINFPNLKEEFPDW-TTRVKQIA----KLWRKASSQER 67 (90)
T ss_dssp HHHHHHHHHGGGCSSSHHHHHHHHCTTHHHHCCSH-HHHHHHHH----HHHHHSCHHHH
T ss_pred hhccCCCCCCCCCccHHHHHHHHhHHHHHHHCcCc-cchHHHHH----HHHHcCCHHHH
Confidence 34456999999999999999999999999999999 8 89998 99999999886
No 31
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.9e-16 Score=104.56 Aligned_cols=50 Identities=16% Similarity=0.359 Sum_probs=47.0
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHH---HHHhhCCCcccc
Q 034117 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAA---GGKWKSMSPAVS 102 (103)
Q Consensus 50 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~l---ge~Wk~Ls~eER 102 (103)
.++|.||||+||||||++++|.+|+.+ ++ ++.||+++| |++|++|+++||
T Consensus 6 ~~~~~PKRP~sAf~lF~~e~R~~ik~e--~~-~~~eisK~l~~cGe~Wk~ls~eEK 58 (93)
T 2cto_A 6 SGMPNRKASRNAYYFFVQEKIPELRRR--GL-PVARVADAIPYCSSDWALLREEEK 58 (93)
T ss_dssp CCCCCCCSSCCHHHHHHHTTHHHHHHH--TC-CCSSHHHHTGGGHHHHHHSCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHHHHcCCHHHH
Confidence 588999999999999999999999988 78 599999999 999999999886
No 32
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=99.59 E-value=5.2e-16 Score=95.31 Aligned_cols=45 Identities=31% Similarity=0.458 Sum_probs=41.0
Q ss_pred CCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 53 NKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 53 ~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
|.||||+||||+|++++|..++.+| ++||++.||++|++||++||
T Consensus 1 g~PKrP~say~~F~~~~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK 45 (67)
T 3fgh_A 1 GKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEK 45 (67)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSS-----HHHHHHHHHHHHHTCCHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHhhCCHHHH
Confidence 6899999999999999999997554 46999999999999999986
No 33
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=99.58 E-value=2e-15 Score=99.60 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=46.3
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 52 p~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
.|.|+||+|||+||++++|..++.+||+ . +.||++.||++|++|+++|+
T Consensus 2 ~~kPKrP~SAy~lf~~~~r~~~k~~~p~-~-~~evsK~lGe~Wk~ls~~eK 50 (91)
T 1l8y_A 2 GKLPESPKRAEEIWQQSVIGDYLARFKN-D-RVKALKAMEMTWNNMEKKEK 50 (91)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHTTS-T-HHHHHHHHHHHHHTTGGGHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHhcCCHHHH
Confidence 3789999999999999999999999998 4 99999999999999999886
No 34
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.56 E-value=9.6e-16 Score=114.84 Aligned_cols=53 Identities=21% Similarity=0.444 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 49 KKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 49 ~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
..||+.||||+|||||||+++|..|+.+||++ ++.||+++||++|++|+++|+
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK 88 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKK 88 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTS-CHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 46899999999999999999999999999999 599999999999999999886
No 35
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.56 E-value=1.4e-15 Score=112.36 Aligned_cols=51 Identities=22% Similarity=0.472 Sum_probs=48.7
Q ss_pred CCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 51 DPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 51 dp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
+|+.|+||+|||||||+++|..|+.+||++ ++.||+++||++|++|+++|+
T Consensus 6 ~p~~PKrP~say~lF~~~~r~~~k~~~P~~-~~~eisk~lge~Wk~Ls~~EK 56 (214)
T 3tq6_A 6 LASCPKKPVSSYLRFSKEQLPIFKAQNPDA-KTTELIRRIAQRWRELPDSKK 56 (214)
T ss_dssp HHHSCCCCCCHHHHHHHHHHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHccCHHhh
Confidence 578999999999999999999999999999 699999999999999999886
No 36
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=99.52 E-value=8.2e-15 Score=97.27 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=42.8
Q ss_pred CCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 50 KDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 50 kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
...++||||+|||||||++++. ..+++++ ++.||++.||++|++|+++||
T Consensus 4 ~~~~~PKrP~say~lF~~e~~~--~p~~~~~-~~~eisK~lge~Wk~ls~~eK 53 (101)
T 1v63_A 4 GSSGPKKPPMNGYQKFSQELLS--NGELNHL-PLKERMVEIGSRWQRISQSQK 53 (101)
T ss_dssp CCCSSCCCCSSSHHHHHHHHHH--HCTTTTS-CHHHHHHHHHHHHTTSCHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHh--CCCCCCC-CHHHHHHHHHHHHHhCCHHHH
Confidence 3567899999999999999975 3345667 599999999999999999986
No 37
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=99.48 E-value=3.7e-14 Score=99.39 Aligned_cols=50 Identities=32% Similarity=0.570 Sum_probs=47.8
Q ss_pred CCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 52 PNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 52 p~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
++.|+||+++||+|+++.|..|..+||++ ++.||+++||++|++|+++|+
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~-~~~eisk~lg~~Wk~ls~~eK 51 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRM-RNSEISKQLGYQWKMLTEAEK 51 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHhhHHHh
Confidence 67999999999999999999999999999 599999999999999999886
No 38
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=99.43 E-value=3.4e-15 Score=110.31 Aligned_cols=52 Identities=31% Similarity=0.385 Sum_probs=45.4
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 46 kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
++..+|||.|+||+||||+||+++|..|..+| +.||++.||++|++|+++||
T Consensus 106 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK 157 (214)
T 3tq6_A 106 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEK 157 (214)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSSCSS-----HHHHHHHHHHHHHTCCHHHH
T ss_pred hhhhccccCcccccchhhhhHHHHHHhhccCC-----HHHHHHHHHHHHHcCCHHHH
Confidence 44567999999999999999999999886433 56999999999999999886
No 39
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=99.42 E-value=6e-15 Score=110.52 Aligned_cols=52 Identities=31% Similarity=0.385 Sum_probs=45.6
Q ss_pred cccCCCCCCCCCCCchhHhHHHHHHHHHHHhCCCCCcHHHHHHHHHHHhhCCCcccc
Q 034117 46 KKAKKDPNKPKRPPSAFFVFLEEFRKTFKKENPNVTAVSAVGKAAGGKWKSMSPAVS 102 (103)
Q Consensus 46 kkk~kdp~~PKRP~say~lF~~e~R~~ik~e~P~~~s~~eisK~lge~Wk~Ls~eER 102 (103)
++..+|++.||||+|||||||+++|..|+.+| ..||++.||++|++|+++||
T Consensus 138 kk~~kdp~~PKrP~say~lF~~e~r~~~k~~~-----p~ei~k~lg~~Wk~ls~~eK 189 (238)
T 3tmm_A 138 KKELTLLGKPKRPRSAYNVYVAERFQEAKGDS-----PQEKLKTVKENWKNLSDSEK 189 (238)
T ss_dssp HHHHHHTTCCCCCCCHHHHHHHHHTTTSCCSS-----HHHHHHHHHHHHHTCCTTTT
T ss_pred hhhhcccCCCCCCCcHHHHHHHHHHHHHhccC-----HHHHHHHHHHHHHhCCHHHH
Confidence 34567999999999999999999999886443 56999999999999999986
No 40
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=31.48 E-value=14 Score=18.46 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=8.5
Q ss_pred CCCCCchhHhH
Q 034117 55 PKRPPSAFFVF 65 (103)
Q Consensus 55 PKRP~say~lF 65 (103)
..||+++|..|
T Consensus 2 ~~rPlSpy~~Y 12 (26)
T 3mhp_C 2 TEQPLSPYTAY 12 (26)
T ss_dssp CCCCSSTTTTB
T ss_pred CccccCccccc
Confidence 35889998876
Done!